BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] (910 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 1853 bits (4800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 910/910 (100%), Positives = 910/910 (100%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM Sbjct: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 Query: 901 EIVDEAESTE 910 EIVDEAESTE Sbjct: 901 EIVDEAESTE 910 >gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 909 Score = 1642 bits (4251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 793/907 (87%), Positives = 857/907 (94%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTEHI+ +DEE EKGITSVSI +EMQNSYLTYAINVILGRAIPDLRDGLK VHRRILFGM Sbjct: 1 MTEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS+ Sbjct: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHNLGEV++GC+A+IDNPDIDLD +M+II GPDFPTGA+ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 YATGRGSIVIRGV+HIEKT GDRE+I+VTEIPYQVNK+AMLEKIAELVREKRIVDI+DLR Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI ILK Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIEILKN 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEVV RRTKYLLNKARDRAHVLVGLAIAV+NLDEVVRIIRFSPNPE+ARRELMQR Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +WNA DIKDLIDLIDDSSYTI SDG MYLSEVQTRAILELRLARLTGLGRDDIR+ELNSL Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+CL+ILSSRSRLL IIKQEL +KDELDTPRRT IV+GLLDMEDEDCIVREDMVV Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTPRRTEIVDGLLDMEDEDCIVREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GYVKRVPLS+YRAQRRGGKGRSGVV R+EDFVTDLFIV+THT VLFFSSLGFVYK Sbjct: 541 TVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIGSPQ+RGKALINILSL QGERITTIMP PEDESS ++LYVVFATK GNVRRN Sbjct: 601 EKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF+Q+NRSGKIAMKLD DEILSVETC + ND+LLTTKLGQC+RF I+ +RVF+GRN Sbjct: 661 KLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDVRVFSGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 SVGVRGI LA+ DQVISMAIVLHADADYDER+CYMK+M++ RRLI+ D +E LKNDSS Sbjct: 721 SVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEGGVLKNDSS 780 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EG ISEERC+ELK KEQFILTVSEKGFGKRTSSYDFRIS+R GKGI ATD SK++EIG Sbjct: 781 IEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGP 840 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L++ FPVND DQIILVSDKGTLIRVPVN+IRIASR+TKGVVIFSTAKDERVVSVERI ES Sbjct: 841 LISAFPVNDKDQIILVSDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISES 900 Query: 901 EIVDEAE 907 +I+D +E Sbjct: 901 DIIDVSE 907 >gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] Length = 934 Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust. Identities = 641/907 (70%), Positives = 758/907 (83%), Gaps = 1/907 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQK AH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L +M+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSIV+RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSIVMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F N+VALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I DGT LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K+EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+++THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTIMP PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT+ +D+LLTT LGQC+RF +S +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISLA GD +ISM IV H DA+ ER Y+K +++RR +G+ EEI + + Sbjct: 721 NSIGVRGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV D++QI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVEDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEA 906 E D+A Sbjct: 901 PEGDDDA 907 >gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419] gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419] Length = 931 Score = 1321 bits (3418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/909 (69%), Positives = 757/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D C+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL SV+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS+KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 >gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021] gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021] Length = 931 Score = 1318 bits (3410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 633/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 >gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] Length = 931 Score = 1316 bits (3406), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 >gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] Length = 927 Score = 1315 bits (3404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/908 (69%), Positives = 756/908 (83%), Gaps = 1/908 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A+ID+P I+L LM+I+ GPDFPTGA+ILGR GI+ A Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALILGRAGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FVAFREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI++ L+ILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT+ +D++LTT +GQC+RFP+S +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAI+ H +A+ ER Y+K +A+RR +G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G +S ER +ELK +EQF+LT+SE+GFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 ANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV NDQI+LVSD G LIRVPV+ IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVEHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SEIVDEAE 907 + DE E Sbjct: 901 PDGEDEIE 908 >gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] Length = 931 Score = 1315 bits (3402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+IDNP I+L LM+II GPDFPTGA+ILGR+GI+ A Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RG +HIE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ LI LIDD + I D T LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R++ I+K EL +V+DE TPRRT I EG DM+DED I +EDMVV Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RGKALIN+L L GERITTIMP PEDE++W NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISL GD++ISMAIV H +A+ ER Y+K +A+RR ++G+ EEI + + Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK EIG Sbjct: 781 TNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FP+ NDQI+LVSD G LIRVPV IR+ASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900 Query: 900 SEIVDEAES 908 + +E E+ Sbjct: 901 PDGDEEIEA 909 >gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42] Length = 941 Score = 1309 bits (3388), Expect = 0.0, Method: Compositional matrix adjust. Identities = 634/902 (70%), Positives = 753/902 (83%), Gaps = 1/902 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+I++P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLR Sbjct: 241 YETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI++ LDILSSR R+ I+K EL +V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L +GD++ISM IV H DA+ ER Y+K +A+RR I D E+I + + Sbjct: 721 NSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI E Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900 Query: 900 SE 901 E Sbjct: 901 PE 902 >gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 941 Score = 1308 bits (3384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 632/898 (70%), Positives = 751/898 (83%), Gaps = 1/898 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGKYHPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+I++P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGISLA GD++ISM IV H +A+ ER Y+K + RRL +G+ EEI + + Sbjct: 721 NSIGVRGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER +ELK EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898 >gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] Length = 930 Score = 1302 bits (3369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/894 (69%), Positives = 751/894 (84%), Gaps = 1/894 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCA Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R++G+VMGK+HPHGNAAIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL Sbjct: 76 RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A+IDNP I+L LM+II GPDFPTGA+I+GR+GI++AY TGRGS+++RG + Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIMGRSGIRSAYETGRGSVIMRGRAT 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDREQI++TE+PYQVNKA M+EK+AELV+EKRI I+DLRDESDRQGYRVV+ELK Sbjct: 256 IEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILNQ+YRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKY Sbjct: 316 RDANAEVILNQIYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKY 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLAI+VAN+DEV+R+IR +P+P +AR ELM R W A D++ LI LID Sbjct: 376 LLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRLID 435 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I DGT LSE Q RAILELRLARLT LGRD+I +ELN +G EI E L+ILSSR Sbjct: 436 DPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSSRL 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K EL++++DE TPRR+ IVEG DM+DED I REDMVVTVSHLGY+KRVPL+ Sbjct: 496 RIMQIVKDELIAIRDEFGTPRRSEIVEGGPDMDDEDLISREDMVVTVSHLGYIKRVPLTT 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFV LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++G Sbjct: 556 YRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKG 615 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L GERITTIMP PEDE++W L V+F+T G VRRNKL DF+Q+NR+GKIA Sbjct: 616 KALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIA 675 Query: 676 MKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL+ DEILSVETCT ++D+LLTT LGQC+RFP+ +RVFAGRNSVGVRGI++A GD+ Sbjct: 676 MKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMADGDR 735 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +ISM IV H +A+ ER Y+K + +RR D E+I + + + EG +SEER QELK Sbjct: 736 IISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVAEEGELSEERYQELK 795 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +E+F+LTVSEKG+GKR+SSYDFR S R GKGIRATD SK EIG LVA FPV++ DQI+ Sbjct: 796 AREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIM 855 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 LVSD G LIRVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E +EAE+ Sbjct: 856 LVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDEEAEN 909 >gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4] gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4] Length = 930 Score = 1301 bits (3367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/893 (69%), Positives = 747/893 (83%), Gaps = 1/893 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILFGM ++G++WNKKYVKCA Sbjct: 15 IEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMSELGIDWNKKYVKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R++G+VMGK+HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL Sbjct: 75 RVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QKAAH LLDDL KDTVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 135 QKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A+I+NP IDL LM+II GPDFPTGA+ILGR+GI++AY TGRGS+++RGV+ Sbjct: 195 VEVINGCIALIENPAIDLPELMQIIPGPDFPTGALILGRSGIRSAYETGRGSVIMRGVAR 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI I+DLRDESDRQGYRVV+ELK Sbjct: 255 IEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVELK 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ADVILNQLYRYT LQS F NMVALNG KPE+ TL+ +L+AFV+FREEV+ RRTKY Sbjct: 315 RDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVISRRTKY 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P+TAR +LM+R W A+D++ LI LID Sbjct: 375 LLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMERRWPAADVESLIRLID 434 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I D T LSE Q RAILELRLARLT LGRD+I ELN +G EI + LDILSSR+ Sbjct: 435 DPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKIGAEISDYLDILSSRT 494 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I+ EL++V+DE TPRR++I+EG DM+DED I REDMVVTVSHLGY+KRVPL Sbjct: 495 RIQTIVVDELVAVRDEFGTPRRSQIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLVT 554 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RG Sbjct: 555 YRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSRG 614 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L GERITTIMP PEDE+SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 615 KALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 674 Query: 676 MKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL+ DEILSVETCT ++D+LLTT LGQ +RFP+ +RVFAGRNS+GVRGISL D+ Sbjct: 675 MKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGRNSIGVRGISLQPNDR 734 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +ISM I+ H DA+ +R Y+K + +RR D ++I + + G++SEER QELK Sbjct: 735 IISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEVGEIGDLSEERYQELK 794 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +EQF+LT+SE+G GKR+SSYDFR S R GKGIRATD SK EIG LVA FPV D DQI+ Sbjct: 795 AREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIM 854 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 LVSD G LIRVPV+ IRIASRATKGV IF+TAKDE+VVSVERI E E ++ E Sbjct: 855 LVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINEPEGEEDGE 907 >gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] Length = 906 Score = 1301 bits (3367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/885 (70%), Positives = 747/885 (84%), Gaps = 1/885 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL+KAAH LLD Sbjct: 61 FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGCVA Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NP I+L +M+II GPDFPTGA+I+GR+GI++AY TGRGS+++RGV+ IE GDRE Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QI++TE+PYQVNKA+M+EK+AELV+EKRI I+DLRDESDRQGYRVVIELKR A+A+VIL Sbjct: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKYLL KARDRA Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAI+VAN+DEV+R+IR +P+P +AR +LM R W A D++ LI LIDD + I D Sbjct: 361 HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRLARLT LGRD+I +ELN +G EI E LDILSSR R+ I+K E Sbjct: 421 GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L+S++DE TPRR++IVEG DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGK Sbjct: 481 LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ RDEDFV LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++GKALIN+L L Sbjct: 541 GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DE 683 GERITTIMP PEDE++W L V+F+T G VRRNKL DF+Q+NR+GKIAMKLD DE Sbjct: 601 EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ILSVETCT +D+LLTT LGQC+RFP+ +RVFAGRNSVGVRGI++A+GD++ISM IV H Sbjct: 661 ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH 720 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +A+ ER Y+K + +RR D E+I + + + EG +SEER QELK +E+F+LTV Sbjct: 721 VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV 780 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 S KGFGKR+SSYDFR S R GKGIRATD +K NEIG LVA FPV + DQI+LVSD G LI Sbjct: 781 SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI 840 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 RVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E DEAE+ Sbjct: 841 RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAEN 885 >gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512] Length = 919 Score = 1299 bits (3361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/876 (71%), Positives = 742/876 (84%), Gaps = 1/876 (0%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM Sbjct: 2 EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L Sbjct: 62 GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 LDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +A+I++P I+L LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GD Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 REQI++TEIPYQVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+V Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 ILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+ Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 D T LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 EL +V+DE TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR- 681 L GERITTI+P PEDE+SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL+ Sbjct: 602 PLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 H DA+ +R Y+K +A+RR D E+I + + + EG +S+ER +ELK +EQF+L Sbjct: 722 GHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 TVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 877 >gi|190891755|ref|YP_001978297.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652] gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652] Length = 919 Score = 1298 bits (3360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 624/876 (71%), Positives = 741/876 (84%), Gaps = 1/876 (0%) Query: 23 DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82 +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM Sbjct: 2 EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61 Query: 83 GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142 GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L Sbjct: 62 GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 LDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262 +A+I++P I+L LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GD Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 REQI++TEIPYQVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+V Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 ILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+ Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502 D T LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 EL +V+DE TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR- 681 L GERITTI+P PEDE SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL+ Sbjct: 602 PLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 H DA+ ER Y+K +A+RR D E+I + + + EG +S+ER +ELK +EQF+L Sbjct: 722 GHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 TVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 877 >gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] Length = 945 Score = 1298 bits (3358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 627/898 (69%), Positives = 749/898 (83%), Gaps = 1/898 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGCVA+ID+P I+L LM+II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K EL++V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT+++D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L D++ISM IV H DA+ ER Y+K + +RR D E+I + + Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + EG +S+ER EL+ +EQF+LTVS+KGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 TEEGQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898 >gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 945 Score = 1295 bits (3350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 625/898 (69%), Positives = 746/898 (83%), Gaps = 1/898 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM Sbjct: 1 MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV Sbjct: 61 SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG G Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A+ID+P I+L L++II GPDFPTGA ILGR GI++A Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKILGRAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D++ LI LIDD + I D T LSE Q RAILELRLARLT LGRD+I +ELN + Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EIK+ LDILSSR R+ I+K ELL+V+DE TPRRT IV+G L+M+DED I REDMVV Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RD DFV+ LF+V+THT VLFFSS G VYK Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+SW+NL V+F+T G VRRN Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKL+ DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI+L D++ISM IV H DA+ ER Y+K + +RR D E+I + + Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 EG +S++R EL+ +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK EIG Sbjct: 781 IEEGQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVA FP++D DQI+LVSD G LIRVPV IRIASRATKGV IFSTAKDE+VVSVERI Sbjct: 841 ELVAAFPIDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERI 898 >gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42] Length = 908 Score = 1283 bits (3321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 619/869 (71%), Positives = 735/869 (84%), Gaps = 1/869 (0%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAI Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDF Sbjct: 61 YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 R NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC+A+I++P I+L Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GDREQI++TEIPY Sbjct: 181 PELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT L Sbjct: 241 QVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIA Sbjct: 301 QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 VAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I D T LSE Q Sbjct: 361 VANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQ 420 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K EL +V+DE Sbjct: 421 ARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDEFG 480 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RD Sbjct: 481 TPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRD 540 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 EDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L GERITTI Sbjct: 541 EDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI 600 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQ 692 +P PEDE+SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL+ DEILSVETCT Sbjct: 601 LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTD 660 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+ ER Sbjct: 661 RDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERA 720 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 Y+K +A+RR I D E+I + + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+ Sbjct: 721 AYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRS 780 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 SSYDFRIS R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G LIRVPV IRI Sbjct: 781 SSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI 840 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901 ASRATKGV IFSTAKDE+VVSVERI E E Sbjct: 841 ASRATKGVTIFSTAKDEKVVSVERISEPE 869 >gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] Length = 935 Score = 1228 bits (3177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/888 (66%), Positives = 724/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R L++GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K + +L D+ KDTVDF+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LMEII GPDFPTG +ILGR+GI +AY TGRGS+V+RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIILGRSGINSAYTTGRGSVVMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ L+ +L+AFV FREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVVFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A+D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAADVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +TI D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMTIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DAD ER Y+K A+RR D ++I + + E ++EER QEL Sbjct: 744 VISMAILHHVDADAAERSAYLKRSIAERRAQGADDADDIVVVGEEVGNETELNEERYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +EQ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI E++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISETD 911 >gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 933 Score = 1227 bits (3175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 598/899 (66%), Positives = 725/899 (80%), Gaps = 4/899 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G WN+KYVK Sbjct: 16 GIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAAHESGYHWNRKYVKS 75 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R Sbjct: 76 ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTEAR 135 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH LL+D+ KDTVDF+ YD S EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 136 LTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGRV 255 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE+ DRE I++TE+PYQVNK++M+EK+AELVR+KRI I+D+RDESDRQGYRVVIEL Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ADVILNQLYR+T LQ+ F NMVALNG KPE L +LKAFVAFREEV+ RRTK Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLKAFVAFREEVITRRTK 375 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LI Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLI 435 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN++G EI + LDILSSR Sbjct: 436 DDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSSR 495 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMVVTVSH GY+KRVPLS Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGSDMEDEDLIQREDMVVTVSHSGYIKRVPLS 555 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALIN+L L QGERITTIMP PEDE+SW LYV+FAT G VRRN LSDF+Q+NR+GKI Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDLSDFVQVNRNGKI 675 Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMKL+ DEIL VETCT ++D+LLT GQC+RF + +RVF RNSVGVRGI++A+ D Sbjct: 676 AMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETD 735 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT--SLKNDS-SVEGNISEERC 790 ++ISM+++ H DA ER Y+K +A+RRL + E +L N+ E +S+ R Sbjct: 736 RIISMSVIEHVDASPAERAAYLKRAAAERRLATETAGEEEEIALTNEEIGEETELSDSRY 795 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +ELK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK EIG LVA FPV ++ Sbjct: 796 EELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGND 855 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E + +E+E T Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQADEESEET 914 >gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19] gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10] gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94] gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1] gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1] gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether] gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1] gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19] gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28] Length = 934 Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 931 Score = 1226 bits (3173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 596/899 (66%), Positives = 723/899 (80%), Gaps = 4/899 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ + G WN+KYVK Sbjct: 16 GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R Sbjct: 76 ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH LL+D+ KDTVDF+ YD S EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 136 LTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG Sbjct: 196 LGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKV 255 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE+ DRE I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+RDESDRQGYRVVIEL Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ADVILNQLYR+T LQ+ F NMVALNG KPE TL +LKAFV+FREEV+ RRTK Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTK 375 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LI Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLI 435 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I +DGT LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR Sbjct: 436 DDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSR 495 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMVVTVSH GY+KRVPLS Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 555 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALIN+L L QGERITTIMP PEDE+SW L V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 675 Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMKL+ DEIL VETCT +D+LLT GQC+RF + +RVF RNSVGVRGI++A+ D Sbjct: 676 AMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETD 735 Query: 734 QVISMAIVLHADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 ++ISM+++ + DA ER Y+K +G+ EEI + E +S+ER Sbjct: 736 RIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERY 795 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + LK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK EIG LVA FPV ++ Sbjct: 796 EFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGND 855 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E + +E+E T Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 914 >gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 934 Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] Length = 922 Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP IDL LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] Length = 934 Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1] Length = 934 Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840] gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840] Length = 934 Score = 1224 bits (3168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TG GS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGHGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVIGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 922 Score = 1224 bits (3166), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941] gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308] gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457] gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1] gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941] gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA gyrase C-terminal repeat, beta-propeller [Brucella melitensis biovar Abortus 2308] gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457] gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90] Length = 922 Score = 1223 bits (3165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915] gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915] Length = 922 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 934 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1] gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1] Length = 934 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEI YQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M] gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 922 Score = 1222 bits (3163), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99] Length = 922 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68] gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] Length = 922 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 723/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D D+ILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13] gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653] gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653] Length = 934 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+ A E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDAD 911 >gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365] gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365] gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 922 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ STHT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33] Length = 934 Score = 1222 bits (3161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD K +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94] Length = 934 Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 24 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 84 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNI HNL Sbjct: 144 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 204 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 264 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 324 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 384 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 443 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 444 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 503 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 504 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 563 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 564 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 623 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 624 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 683 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 684 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 743 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 744 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 803 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 804 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 863 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 864 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 911 >gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1] gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1] Length = 929 Score = 1221 bits (3160), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/893 (66%), Positives = 719/893 (80%), Gaps = 2/893 (0%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G WN+K Sbjct: 10 DEPDDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASYESGYHWNRK 69 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 YVK AR +VMGKYHPHG+A+IYDAL RMAQDWS+R+ LI+GQGNFGS+DGDPPAA RY Sbjct: 70 YVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSIDGDPPAAMRY 129 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K AH LL+D+ KDTVDF+ YDG+ EP +L AR+PN+LVNG GGIAVGMATNI Sbjct: 130 TEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGGIAVGMATNI 189 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVV+GCVA+IDNP + L L+EII GPDFPTG +ILGR+GI +AYATGRGS+V+ Sbjct: 190 PPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIILGRSGIHSAYATGRGSVVM 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE+ +RE I++TE+PYQVNKA M+EK+AELVREKRI I+D+RDESDRQGYRV Sbjct: 250 RGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIRDESDRQGYRV 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+VILNQLYR+T LQ+ F NMVALNG KPE L+ +L+AFVAFREEVV Sbjct: 310 VIELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLLDMLRAFVAFREEVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKYLL K R+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ L Sbjct: 370 RRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMERRWPAQDVESL 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I LI D + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI++ LDI Sbjct: 430 ILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIQDYLDI 489 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LSSR+R+ GI+K EL++V+DE TPRRT I EG DMEDED I REDMVVTV+H GY+KR Sbjct: 490 LSSRARVQGIVKDELIAVRDEFGTPRRTEITEGGADMEDEDLIPREDMVVTVTHKGYIKR 549 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPLS+YRAQ RGGKGRSG+ +DEDFVT LF+ +THT +LFFSS G VYKEKVWRLP+G+ Sbjct: 550 VPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYKEKVWRLPVGT 609 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 PQ+ GK L N+L L +GERIT+IMP PEDE SW L V+FAT G VRRNKLSDF Q+NR Sbjct: 610 PQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRNKLSDFTQVNR 669 Query: 671 SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GKIAMKLD DEIL+V TCT+++D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+L Sbjct: 670 NGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSIGVRGINL 729 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI-SEE 788 GD+VISMAIV H DA ER Y+K +A+RRL +G EE +L N+ E + S E Sbjct: 730 PDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEEVGEETVLSPE 789 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R +ELK +EQF+LTVSE G+GKR+SSYDFR+ R GKGIRATDVSK EIG+L+A FPV Sbjct: 790 RYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVA 849 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 DQI+LVS+ G +IRVPV IRIASRATKGV IF+TA ERVVSV+RI E + Sbjct: 850 PEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSVDRISEPQ 902 >gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330] gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330] gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 922 Score = 1221 bits (3159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 922 Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD K +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] Length = 945 Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/887 (66%), Positives = 714/887 (80%), Gaps = 4/887 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M + G WN+KYVK Sbjct: 14 GIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMHEGGYHWNRKYVKS 73 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +RI G+VMGKYHPHG+ +IYDA+ RMAQ WS+ +LI+GQGNFGS+DGDPPAA RYTE R Sbjct: 74 SRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSIDGDPPAAMRYTESR 133 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH +++D+ KDTVDF+ YD S +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 134 LAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGGIAVGMATNIPPHN 193 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A++DNP IDL LM+II GPDFPT +ILG+ GI+ A+ TGRGS+++RG Sbjct: 194 LVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIILGQAGIRQAFETGRGSVIMRGKV 253 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+E DRE I++TE+PYQVNK++M+EK+AELVR+KRI I+DLRDESDRQGYRVVIEL Sbjct: 254 HVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLRDESDRQGYRVVIEL 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ADVI+NQLYRYT LQS F VNMVALNG KPE LI +LKAFV+FRE+V+ RRTK Sbjct: 314 KRDANADVIINQLYRYTPLQSSFGVNMVALNGGKPELMNLIDMLKAFVSFREDVITRRTK 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM R W A D++ LI LI Sbjct: 374 YLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTRRWPAMDVEVLIRLI 433 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I DGT LSE Q RAILELRLARLT LGRD+I +EL +G EIK+ L+IL SR Sbjct: 434 DDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKIGEEIKDFLEILGSR 493 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ I+K EL++V+DE PRRT I EG DM+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 494 IRVQQIVKDELIAVRDEFGVPRRTVIAEGGPDMDDEDLIAREDMVVTVSHAGYIKRVPLA 553 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+P +R Sbjct: 554 TYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPTSR 613 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALIN+L L +GERIT+IMP PEDE+S L V+F+TK G VRRNKLSDF+Q+NR+GKI Sbjct: 614 GKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRNKLSDFVQVNRNGKI 673 Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMKLDS DEIL+VETC + +D+LLTT LGQC+RF + +RVFAGRNSVGVRGI+L +GD Sbjct: 674 AMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGRNSVGVRGINLGQGD 733 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI---SGDTEEITSLKNDSSVEGNISEERC 790 +ISM IV H DA+ ER Y+K A+RR GD EE+ + D+ +G +S+ER Sbjct: 734 TIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGELSDERY 793 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ELK +EQFILTVSEKG+GKR+SSY+FRIS R GKGIRATD SK EIG L+A FPV Sbjct: 794 AELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTGEIGPLIAAFPVEPG 853 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQI++VSD G +IRVPV IR+ASRATKGV IF+TAKDERVVSV+RI Sbjct: 854 DQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSVDRI 900 >gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] Length = 922 Score = 1220 bits (3156), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+ A E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDAD 899 >gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94] Length = 922 Score = 1219 bits (3155), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/888 (66%), Positives = 722/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNI HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DA ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445] gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445] Length = 922 Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/888 (66%), Positives = 721/888 (81%), Gaps = 2/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LL D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K+E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE W NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H D ER Y+K A+RR D ++I + D E +SE+R QEL Sbjct: 732 VISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDAD 899 >gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188] gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188] Length = 923 Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/897 (65%), Positives = 723/897 (80%), Gaps = 3/897 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEVMGKYHPHG+A+IYDAL RMAQD+S+R L++GQGNFGS+DGDPPAA RYTECRL Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K +L D+ KDTVDF+ NYDG QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+I+NP I L+ ++EII GPDFPTG +ILGR GI +AY TGRGS+++RG + Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIILGRAGINSAYTTGRGSVIMRGRAT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELK Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ L+ +L+AFVAFREEVV RRTK+ Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVAFREEVVTRRTKF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LID Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I D T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDILSSR Sbjct: 432 DPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSSRL 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K E+++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ Sbjct: 492 RVMTIVKDEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG Sbjct: 552 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIA Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671 Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL D DEILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+ Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQEL 793 VISMAI+ H DAD R Y+K A+RR D ++I + D + ++EE QEL Sbjct: 732 VISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQEL 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +E+ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV +DQI Sbjct: 792 KAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQI 851 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LVSD G LIRVPV+ IRIA R+TKGV IF+TA E+VVSVERI E++ DE +E Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISEAD-SDEENGSE 907 >gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] Length = 933 Score = 1218 bits (3151), Expect = 0.0, Method: Compositional matrix adjust. Identities = 594/897 (66%), Positives = 723/897 (80%), Gaps = 4/897 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ + G WN+KYVK Sbjct: 16 GIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKS 75 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE R Sbjct: 76 ARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESR 135 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K AH LL+D+ K+TVDF+ YD S EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 136 LTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHN 195 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +AYATGRGSIV+RG Sbjct: 196 LSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYATGRGSIVMRGKV 255 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE+ DRE I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+RDESDRQGYRVVIEL Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ADVILNQLYR+T LQ+ F NMVALNG KPE L +L+AFV+FREEV+ RRTK Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLRAFVSFREEVITRRTK 375 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 +LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W + D++ LI LI Sbjct: 376 FLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLI 435 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN++G EI + LDILSSR Sbjct: 436 DDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSSR 495 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +R+ I+K EL +V+DE TPRRT + +G DMEDED I REDMVVTVSH GY+KRVPLS Sbjct: 496 ARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 555 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YRAQRRGGKGRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R Sbjct: 556 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSR 615 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALIN+L L QGERITTIMP PEDE+SW L V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 616 GKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKI 675 Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMKL+ DEIL VETCT +D+LLT GQC+RF + +RVF RNSVGVRGI++A D Sbjct: 676 AMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQSRNSVGVRGITMAATD 735 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRL--ISGDTEEITSLKNDS-SVEGNISEERC 790 ++ISM+++ H DA ER Y+K +++RRL + EE +L N+ E +S+ R Sbjct: 736 RIISMSVIEHVDASPAERAAYLKRAASERRLAAETAGEEEEIALTNEEIGEETELSDSRY 795 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +ELK EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK EIG LVA FPV ++ Sbjct: 796 EELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGND 855 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E + +E E Sbjct: 856 DQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEEIE 912 >gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 906 Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/889 (66%), Positives = 716/889 (80%), Gaps = 4/889 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ + G WN+KYVK AR +VMGK Sbjct: 1 MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+ Sbjct: 61 YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ YD S EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG +IE+ DRE Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGNDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TE+PYQVNKA+M+EK+AELVR+KRI I+D+RDESDRQGYRVVIELKR A ADVIL Sbjct: 241 SIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F NMVALNG KPE TL +LKAFV+FREEV+ RRTK+LL KARDRA Sbjct: 301 NQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD + I +D Sbjct: 361 HVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRINAD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR+R+ I+K E Sbjct: 421 GTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVKDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +V+DE TPRRT + +G DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGK Sbjct: 481 LAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RGKALIN+L L Sbjct: 541 GRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DE 683 QGERITTIMP PEDE+SW L V+FAT G VRRNKLSDF+Q+NR+GKIAMKL+ DE Sbjct: 601 EQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 IL VETCT +D+LLT GQC+RF + +RVF RNSVGVRGI++A+ D++ISM+++ + Sbjct: 661 ILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEN 720 Query: 744 ADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 DA ER Y+K +G+ EEI + E +S+ER + LK EQ++ Sbjct: 721 VDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYV 780 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK EIG LVA FPV ++DQI+LVSD G Sbjct: 781 LTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLVSDGG 840 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 T+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E + +E+E T Sbjct: 841 TVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 889 >gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M] Length = 902 Score = 1216 bits (3145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 589/883 (66%), Positives = 719/883 (81%), Gaps = 2/883 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A + GEVMGK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A+IYDAL RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL+K LL Sbjct: 61 YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV+F+ NYDG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP I+L LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE GDRE Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TEIPYQVNKA+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELKR A ADV+L Sbjct: 241 AIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRA Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD +T+ D Sbjct: 361 HVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNED 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 T LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E Sbjct: 421 NTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 +++V+DE TPRRT I G +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGK Sbjct: 481 MIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RGKALIN+L L Sbjct: 541 GRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683 QGERITTIMP PEDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL D DE Sbjct: 601 QQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDE 660 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ILSV+TCT+ +D+LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H Sbjct: 661 ILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHH 720 Query: 744 ADADYDERICYMKHMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 DA ER Y+K A+RR D ++I + D E +SE+R QELK +E+ +LT Sbjct: 721 VDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLT 780 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 VSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV +DQI+LVSD G L Sbjct: 781 VSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQL 840 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 IRVPV+ IRIA R+TKGV IF+TA E+VVSVERI +++ +E Sbjct: 841 IRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 883 >gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup] gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup] Length = 927 Score = 1206 bits (3119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 590/890 (66%), Positives = 712/890 (80%), Gaps = 3/890 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 15 GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKS 74 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSVDGDPPAA RYTECR Sbjct: 75 AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILG +G++ AY TGRGSI++R Sbjct: 195 LGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGLSGVRAAYETGRGSIIMRAKV 254 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLRDESDR GYRVVIEL Sbjct: 255 EIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK Sbjct: 315 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+ LI LI Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKLI 434 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR Sbjct: 435 DDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILASR 494 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ I+K EL ++++E TPRRT G +ME ED I EDMVVTVSH GY+KRVPL+ Sbjct: 495 VRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPLN 554 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+R Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQSR 614 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRNGKI 674 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRNSVGVRGI+LAKGD+ Sbjct: 675 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRNSVGVRGINLAKGDK 734 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSL-KNDSSVEGNISEERCQ 791 VISM I+ H +A ER Y+K + +RR D E+I +L + D E +++ER Sbjct: 735 VISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGAETELTDERYA 794 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK EIG LVA FPV D Sbjct: 795 ELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQD 854 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 QI+LVSD G LIRVPV IR A R+TKGV IF+TAK ERVVSVERI E E Sbjct: 855 QIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERISEPE 904 >gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] Length = 916 Score = 1204 bits (3116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 593/899 (65%), Positives = 718/899 (79%), Gaps = 5/899 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 4 GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKS 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSVDGDPPAA RYTECR Sbjct: 64 AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 124 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILGR+G+++AY TGRGSI++R Sbjct: 184 LSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAKV 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLRDESDR GYRVVIEL Sbjct: 244 DIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK Sbjct: 304 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRTK 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+ LI LI Sbjct: 364 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKLI 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I DGT LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR Sbjct: 424 DDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILASR 483 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ I+K EL ++++E TPRRT G +ME ED I EDMVVTVSH GY+KRVPL+ Sbjct: 484 VRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPLN 543 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+R Sbjct: 544 TYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQSR 603 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ALIN+L L QGERITTIMP PEDE+SW+ L ++FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 604 GRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGKI 663 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRNSVGVRGI+LAKGD+ Sbjct: 664 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGDK 723 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSL-KNDSSVEGNISEERCQ 791 VISM I+ H +A ER Y+K + +RR D E+I SL + D E ++++ER Sbjct: 724 VISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERYA 783 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK EIG LVA FPV D Sbjct: 784 ELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQD 843 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 QI+LVSD G LIRVPV IR A R+TKGV IF+TA+ ERVVSVERI E E D+ S E Sbjct: 844 QIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPE--DDTRSLE 900 >gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1] gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1] Length = 931 Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 588/888 (66%), Positives = 713/888 (80%), Gaps = 1/888 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 15 GIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKPYRKS 74 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSVDGDPPAA RYTECR Sbjct: 75 AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+D C+A+IDNPDI LD ++EII GPDFPTG +ILG +G+++AY TGRGSI++R Sbjct: 195 LGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGVRSAYETGRGSIIMRAKV 254 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+T R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLRDESDR GYRVVIEL Sbjct: 255 DIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK Sbjct: 315 KRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A+D+ LI LI Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMERRWPAADVAPLIKLI 434 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I +D T LSE Q RAILELRL RLT LGRD+I +ELN +G++I + L IL+SR Sbjct: 435 DDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILASR 494 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 SR++ IIK EL +++ TPRRT G +M+ ED I EDMVVTVSH GY+KRVPLS Sbjct: 495 SRIMSIIKDELNVLREAFATPRRTVFGFGSAEMDCEDLIAPEDMVVTVSHSGYIKRVPLS 554 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G VYKEKVWRLP+G+PQ+R Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYKEKVWRLPLGTPQSR 614 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ALIN+L L QGERITTIMP PEDE+ W+ L V+FAT G VRRNKLSDF+QINR+GKI Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVRRNKLSDFVQINRNGKI 674 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVFAGRNSVGVRGI+LA D+ Sbjct: 675 AMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAGRNSVGVRGINLANDDK 734 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGNISEERCQEL 793 VISM I+ H +A ER Y+K + +RR D E++ +L + D +V+ ++E R EL Sbjct: 735 VISMTILEHVEATSVERSAYIKRVINERRAAGSDAEDLVTLDEEDEAVDTELTEGRYLEL 794 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK EIG LVA FPV DQI Sbjct: 795 HAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQI 854 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV IRIA R+TKGV IF+TA+ E+VVSVERI ESE Sbjct: 855 MLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISESE 902 Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 127/277 (45%), Gaps = 33/277 (11%) Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-----DCIVREDMVVT 541 LD++ + +R G +++ LS D + R +I L D EDE C R D+V+T Sbjct: 645 ALDVMFATTR--GTVRRNKLS--DFVQINRNGKIAMKL-DEEDEILSVETCTERHDVVLT 699 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 + G R P+ + R GR+ V +R + D ++S ++L V + Sbjct: 700 TAK-GQCIRFPV----VEVRVFAGRNSVGVRGINLANDDKVISM--TILEHVEATSVERS 752 Query: 602 KVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLY-----VVFATKHG 655 + I +A G ++++L++ E + T + E + L+ ++ ++ G Sbjct: 753 AYIKRVINERRAAGSDAEDLVTLDEEDEAVDTEL----TEGRYLELHAREQMLLTVSEFG 808 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPI 710 +R+ +F R GK D ++++ ++ I+L + GQ +R P+ Sbjct: 809 YGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRVPV 868 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 IR+ AGR++ GV + A+G++V+S+ + ++ D Sbjct: 869 EGIRI-AGRSTKGVTIFNTAEGEKVVSVERISESEDD 904 >gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C] Length = 922 Score = 1197 bits (3096), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/902 (64%), Positives = 720/902 (79%), Gaps = 1/902 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+ID+P+I LD ++EII GPDFPTG +ILGR+G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I E L ILSSR R++GI+K EL ++++E TPRRT G +M +ED IV EDMVV Sbjct: 481 GVDITEYLHILSSRLRIMGIVKDELSTLREEFVTPRRTVFGFGNAEMNNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+ W+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +R+F GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR DTE++ + +N+ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENED 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SE 901 E Sbjct: 901 PE 902 Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 120/273 (43%), Gaps = 21/273 (7%) Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED----EDCIVREDMVVTVS 543 LD++ + +R G +++ LS D + R +I L D ++ E C R+D+V+T + Sbjct: 646 LDVMFATTR--GTVRRNKLS--DFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTA 701 Query: 544 HLGYVKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + G R P + V R G G+ M D D V + I+ H ++ + Sbjct: 702 N-GQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMTILE-HVEATSVERSAYIKRAI 759 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 R G+ + I+ N+ T + E + ++ ++ G +R+ Sbjct: 760 NERRSAGADTED----VVIVDENEDGDETELTDERYAELAAREQMLLTVSEFGYGKRSSS 815 Query: 663 SDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +F R GK D ++++ ++ I+L + GQ +R PI IR+ A Sbjct: 816 YEFRISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRI-A 874 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 GR++ GV + AKG++V+S+ + + D ++ Sbjct: 875 GRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 907 >gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 922 Score = 1193 bits (3086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/902 (64%), Positives = 722/902 (80%), Gaps = 1/902 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP+I LD ++EII GPDFPTG +ILGR+G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L ILSSR R++GI+K EL ++++E TPRRT G +M++ED IV EDMVV Sbjct: 481 GVDITDYLHILSSRLRIMGIVKNELSTLREEFVTPRRTVFGFGNAEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVF GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR DTE++ + +++ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDED 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVS+ G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SE 901 E Sbjct: 901 PE 902 Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 ++ I+L + GQ +R PI IR+ AGR++ GV + AKG++V+S+ + + D ++ Sbjct: 851 QDQIMLVSNGGQLIRVPIEGIRI-AGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 907 >gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2] gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2] Length = 889 Score = 1193 bits (3086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 579/870 (66%), Positives = 706/870 (81%), Gaps = 2/870 (0%) Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 + RA+PD+RDGLKPVHRRIL M +M + +N+ Y K A + GEVMGKYHPHG+A+IY AL Sbjct: 1 MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 RMAQD+S+R LI+GQGNFGS+DGDPPAA RYTECRL+K LL D+ KDTV+F+ NY Sbjct: 61 VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 DG QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L LM Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277 E+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE GDRE I++TEIPYQVNK Sbjct: 181 ELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNK 240 Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337 A+M+EK+AELVR+KRI I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F Sbjct: 241 ASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSF 300 Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397 NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+ Sbjct: 301 GCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360 Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457 DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD +T+ D T LSE Q RAI Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420 Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 L+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE TPRR Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRR 480 Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 T I G +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+ ++EDFV Sbjct: 481 TEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFV 540 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 T LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP P Sbjct: 541 TRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLP 600 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDI 696 EDE SW NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL D DEILSV+TCT+ +D+ Sbjct: 601 EDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDV 660 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 LLT GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA ER Y+K Sbjct: 661 LLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLK 720 Query: 757 HMSAQRRLISG-DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 A+RR D ++I + D E +SE+R QELK +E+ +LTVSE G+GKR+SSY Sbjct: 721 RSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSY 780 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +F IS R GKGIRATD SK +EIG LVA+FPV +DQI+LVSD G LIRVPV+ IRIA R Sbjct: 781 EFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGR 840 Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +TKGV IF+TA E+VVSVERI +++ +E Sbjct: 841 STKGVTIFNTADGEKVVSVERISDADSDEE 870 >gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583] gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis] gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583] Length = 928 Score = 1191 bits (3080), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/903 (64%), Positives = 718/903 (79%), Gaps = 8/903 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 + EH +S+ GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 7 LPEHDVST------GIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ KDTVDF+ NYDG EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGCVA+IDNP+I +D ++ II GPDFPTG +ILG +G+++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR + +P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W AS++ LI LIDD + I D T LSE Q RAILELRL RLT LGR++I +ELN++ Sbjct: 421 RWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G +I + L IL+SRSR++ I+K EL ++++ TPRRT G +M+ ED IV EDMVV Sbjct: 481 GEDIADYLGILASRSRIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +D+DFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW L ++FAT G VRRN Sbjct: 601 EKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++L T GQC+RFP++ IRVF+GR Sbjct: 661 KLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 NS+GVRGI++ +GD+VISM I+ H +A ER Y+K +RR+ D E+I ++ D Sbjct: 721 NSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDG 780 Query: 780 -SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +++ER EL EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD+SK EI Sbjct: 781 EETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV + DQI+LVSD G LIRVPVN IRIA R+TKGV +F+TAK E+VVSVERI Sbjct: 841 GKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERIS 900 Query: 899 ESE 901 ESE Sbjct: 901 ESE 903 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 123/275 (44%), Gaps = 24/275 (8%) Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE----DCIVREDMVVTVS 543 LDI+ + +R G +++ LS D + R +I L + DE + D VV ++ Sbjct: 646 LDIMFATTR--GTVRRNKLS--DFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLIT 701 Query: 544 HLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 G R P++ R R G G+ M + D V + I+ H ++ + Sbjct: 702 ANGQCIRFPVTDIRVFSGRNSMGVRGINMVEGDKVISMTILE-HVEATSVERSAYIKRAI 760 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRN 660 R GS +IL++++ T + E E S + ++ ++ G +R+ Sbjct: 761 NERRVAGSDDE------DILTVDEDGEETEVELTDERYAELSAHEQMLLTVSEFGYGKRS 814 Query: 661 KLSDFIQINRSGK--IAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715 DF R GK A L EI ++ + + I+L + GQ +R P++ IR+ Sbjct: 815 SSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRI 874 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 AGR++ GV + AKG++V+S+ + ++ D ++ Sbjct: 875 -AGRSTKGVTVFNTAKGEKVVSVERISESENDTNQ 908 >gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] Length = 923 Score = 1185 bits (3066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 577/903 (63%), Positives = 718/903 (79%), Gaps = 2/903 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+T+DF+ NYDG +EPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLY YT LQ+ F N+VALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAH+LVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ L+ LIDD + I + T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + L IL+SR R++GI+K EL ++++E PRRT G ++M++ED IV EDMVV Sbjct: 481 GVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPL+ YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+Q+NR+GKIAMKLD D ILSVETCT+ +D++LTT GQC+RFP+ +RVFAGR Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KND 778 NSVGVRGI++ GD+VISM I+ H +A ER Y+K +RR D E++ + +N Sbjct: 721 NSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDENG 780 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EI Sbjct: 781 EGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G LVA FPV DQI+LVSD G LIR+P+ IRIA R+TKGV IF+TAK E+VVSVERI Sbjct: 841 GKLVAAFPVKAQDQIMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900 Query: 899 ESE 901 + E Sbjct: 901 DPE 903 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 124/278 (44%), Gaps = 30/278 (10%) Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-----EGLLDMEDEDCIVREDMVVTV 542 LD++ + +R G +++ LS D + R +I EG + E C R+D+V+T Sbjct: 646 LDVMFATTR--GTVRRNKLS--DFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTT 701 Query: 543 SHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ G R P+ R R G G+ M D D V + I+ H ++ + Sbjct: 702 AN-GQCIRFPVIDVRVFAGRNSVGVRGINMVDGDKVISMTILE-HVEATSVERSAYIKR- 758 Query: 602 KVWRLPIGSPQARGKALINILSLNQ-GERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 I +A G +++ +++ GE T + + E + L V ++ G Sbjct: 759 -----AINERRAAGADAEDVVIVDENGEGTETELTDERYAELAAREQMLLTV--SEFGYG 811 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISA 712 +R+ +F R GK D ++++ ++ I+L + GQ +R PI Sbjct: 812 KRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQIMLVSDGGQLIRIPIEG 871 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 IR+ AGR++ GV + AKG++V+S+ + + D ++ Sbjct: 872 IRI-AGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQ 908 >gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3] Length = 922 Score = 1184 bits (3064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/902 (64%), Positives = 721/902 (79%), Gaps = 1/902 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ S+ + GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSV Sbjct: 61 NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTECRL+K A LL D+ K+TVDF+ NYDG +EP+VL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI I+DLR Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+A Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLMER 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A+D+ LI LIDD + I D T LSE Q RAILELRL RLT LGRD+I +ELN + Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G++I + LD+L+SR R++GI+K EL +++ E TPRRT G +M++ED IV EDMVV Sbjct: 481 GVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTPRRTIFGFGNAEMDNEDLIVPEDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KRVPLS YRAQRRGGKGRSG+ +DEDFVT LF+ +THTSVLFFSS G VYK Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLFFSSRGIVYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLPIG+PQ+RG+AL+N+L L + ER+TTIMP PEDE+SW+ L V+FAT G VRRN Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFATTRGTVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDFIQ+NR+GKIAMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +RVF GRN Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMGRN 720 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDS 779 SVGVRGI++ GD+VISM I+ H +A ER Y+K +RR+ D + + +++ Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEE 780 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +E +++ER EL +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K EIG Sbjct: 781 EIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIG 840 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA FPV DQI+LVSD G LIRVP+ IRIA R+TKGV IF+TAK E+VVSVERI + Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900 Query: 900 SE 901 E Sbjct: 901 PE 902 >gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1] Length = 927 Score = 1182 bits (3059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 585/904 (64%), Positives = 713/904 (78%), Gaps = 10/904 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 15 GIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKS 74 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGS+DGDPPAA RYTECR Sbjct: 75 AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECR 134 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L+K + LL D+ KDTVDF+ NYDG +EP+VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 135 LEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDGC+A+ID+P I LD +++II GPDFPTG +ILG +GI++AY TGRGSI++R Sbjct: 195 LGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSAYETGRGSIIMRAKV 254 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI ++DLRDESDR GYRVVIEL Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVIEL 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ADV+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ IL+AFV+FREEVV RRTK Sbjct: 315 KREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRAFVSFREEVVSRRTK 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL +AR+RAHVLVGLAIAVAN+DE++ +IR + +P+ AR +LM+R W A DI LI LI Sbjct: 375 YLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAVDIAPLIKLI 434 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I D T +LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+SR Sbjct: 435 DDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILASR 494 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 SR++GI+K EL ++++ TPRRT G DM+ ED I E+MVVTVSH GY+KRVPL+ Sbjct: 495 SRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEMVVTVSHSGYIKRVPLN 554 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+R Sbjct: 555 TYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSR 614 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ALIN+L L QGERITTIMP P+DE W L V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 615 GRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRNKLSDFVQVNRNGKI 674 Query: 675 AMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMK + DEILSVETCT+ +D++LTT GQC+RFP+S +RVF GR+S+GVRGI++ D Sbjct: 675 AMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGRHSMGVRGINMGDSD 734 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE---ERC 790 +VISM I+ H +A ER Y+K + ++RR D E+I + D E ++E ER Sbjct: 735 KVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDI--VIGDEESEATVTELTDERY 792 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 EL EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD SK EIG LVA FPV Sbjct: 793 MELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEIGKLVAAFPVEAQ 852 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI----VDEA 906 DQI+LVSDKG LIRVPVN IRIA R+TKGV IF+TAK E+VVSVERI E E+ DE Sbjct: 853 DQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERISEPEVNASEPDEE 912 Query: 907 ESTE 910 ES + Sbjct: 913 ESEQ 916 >gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse] gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse] Length = 925 Score = 1182 bits (3058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 578/888 (65%), Positives = 709/888 (79%), Gaps = 1/888 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL M +MG+ +NK Y K Sbjct: 15 GIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLAFNKPYRKS 74 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR LI+GQGNFGSVDGDPPAA RYTECR Sbjct: 75 AGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECR 134 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L+K + LL D+ KDTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 135 LEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD C+A+ID+P+I LD ++EII GPDFPTG +ILG +GI++AY TGRGSI++R Sbjct: 195 LGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIILGHSGIRSAYETGRGSIIMRAKV 254 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ R+ I+V+EIPYQVNKA M+EK+AELVR+KRI I+DLRDESDR GYRVVIEL Sbjct: 255 DIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+V+LNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK Sbjct: 315 KKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREEVVSRRTK 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAHVLVGLA+AVAN+DE++ +IR + +P+ AR +LM+R W A+D+ LI LI Sbjct: 375 YLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLMERRWLAADVASLIKLI 434 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + I D T LSE Q RAILELRL RLT LGRD+I +ELN +G++I + L IL+SR Sbjct: 435 DDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLHILASR 494 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 SR++ I+K EL +++ TPRRT G +M+ ED I EDMVVTVSH GY+KRVPL+ Sbjct: 495 SRIMSIVKDELNVLREAFATPRRTIFGFGSAEMDCEDLIAPEDMVVTVSHSGYIKRVPLN 554 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G VYKEKVWRLPIG+PQ+R Sbjct: 555 TYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVLFFSTRGIVYKEKVWRLPIGTPQSR 614 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 615 GRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKLSDFVQVNRNGKI 674 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD DEILSVETCT+ +D++LTT GQC+RFP+ +R+FAGRNSVGVRGI+L GD+ Sbjct: 675 AMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRNSVGVRGINLTNGDK 734 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGNISEERCQEL 793 VISM ++ H +A ER Y+K + +RR D E+I L +ND E +++ER EL Sbjct: 735 VISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDVGTETELTDERYAEL 794 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +EQ +LT+SE G+GKR+SSY+FRIS R GKGIRATD SK EIG LVA FPV DQI Sbjct: 795 NAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQI 854 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +LVSD G LIRVPV+ IRI R+TKGV IF+TA+ ++VVSVERI ESE Sbjct: 855 MLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISESE 902 >gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1] gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1] Length = 912 Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/897 (63%), Positives = 717/897 (79%), Gaps = 8/897 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 17 IRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL Sbjct: 77 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 QKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +A+++NP + L+ L+EII GPDFPTG +ILGR+GI++AY TGRGS+V+RG Sbjct: 197 GEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRSAYETGRGSVVMRGKVE 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ RE ++V+EIPYQVNKA M+EKIAELVREKRI I+D+RDESDR G RVVIELK Sbjct: 257 VEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDIRDESDRLGMRVVIELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ADVILNQLYR+++LQ+ F NMVALNG +PE+ L +LKAF+AFREEV+ RRT++ Sbjct: 317 KDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLKAFIAFREEVIGRRTRF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LMQR+W A D+ LI LID Sbjct: 377 LLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQRNWPAMDVAPLILLID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ DGT LSE Q RAIL+LRL RLT LGRD+I +ELN LG EI + L+IL SR Sbjct: 437 DPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNKLGEEIADYLEILRSRP 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ II++ELL +++E TPR+T IVEG D+EDED I REDMVVTVSH GY+KRVPL+ Sbjct: 497 RIQQIIREELLEIRNEFATPRKTEIVEGGADLEDEDLIQREDMVVTVSHTGYIKRVPLAT 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G VYK KVWRLP+G P +RG Sbjct: 557 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKMKVWRLPLGGPTSRG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N+L L GE+I++IMP PE+E SW +L V+FAT G VRRNKLSDF Q+NR+GKIA Sbjct: 617 KALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRRNKLSDFTQVNRNGKIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D I+ V TCT+ +D+LLTT GQC+RFP++ +RVFAGRNSVGVRGI+LA+ D + Sbjct: 677 MKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGRNSVGVRGINLAEDDHL 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQEL 793 ISM+I+ H +AD +ER+ Y+K +RRL+ G+TE+ + ++ EG++S ER E+ Sbjct: 737 ISMSILRHFEADAEERVTYLK----RRRLMRGETEDAGVEDEAEEAGAEGHLSLERYAEM 792 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQ ILTVSE G+GKRTSS+++R++ R GKGI A V++ N G LVA FPV D+DQI Sbjct: 793 SAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRN--GPLVAAFPVEDSDQI 850 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LV+D G LIR PV+ IR+A RAT+GV++F+TA+DE+VV+VER+ E E D +E Sbjct: 851 MLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERVSEDEDGDTGAESE 907 >gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] Length = 947 Score = 1172 bits (3031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 578/912 (63%), Positives = 711/912 (77%), Gaps = 3/912 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E I++ E GI S+SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MAEDDITTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MG+ +N+ Y K A + GEVMGKYHPHG+++IYDAL RMAQDWSLR LIEGQGNFGS+ Sbjct: 61 HGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE RL K + LL D+ K+TV+F+ NYDG QEPVVL AR+PN+LVNG G Sbjct: 121 DGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE+VDGCVA+IDNP I L+ LM I GPDFPTGA++LGR GI +A Sbjct: 181 GIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y+TGRGSI++RG +H+E DRE IV+TE+P+QVNK+ M+EK+A+LVR+KRI I+D+R Sbjct: 241 YSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR GYRVV+ELKR AS+DVILNQLYR+T LQ+ F NMVALNG +PE+ TL +L A Sbjct: 301 DESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F++FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R Sbjct: 361 FISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W A D+ LI LIDD + I +GT LSE Q RAIL+LRL RLT LGRD+I +ELN + Sbjct: 421 AWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKI 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 G EI+E L+ILSSR R+ IIK+EL++V+DE TPRRT + EG DM+DED I REDMVV Sbjct: 481 GEEIREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEGAADMDDEDLIPREDMVV 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVY 599 TVSH GY+KRVPL+ YR+QRRGGKGR+G+ ++ DED VT LF+ +THT VLFFSS G VY Sbjct: 541 TVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ SPQ+RGKALIN+L L +GERIT+I+P P D + L V+FAT G VRR Sbjct: 601 KEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRR 660 Query: 660 NKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 NKLSDF Q+NR+GKIAMKLD DEIL+V TC++++D+LLT GQC+RF + +RVFAG Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RNSVGVRGISL +GD+VISMAI+ H DA ER Y+K A GD +++ + Sbjct: 721 RNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEE 780 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + I +ER L E+ ILTVSE G+GKR+SSY+FR+ R GKGIRATD S+ +EI Sbjct: 781 GAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEI 840 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L+A FPV DQI+LV+D+G LIRVPV IR A RAT+GV IF TA ERVVSVERI Sbjct: 841 GQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIP 900 Query: 899 ESEIVDEAESTE 910 + + DEA E Sbjct: 901 D-QGADEAGEAE 911 >gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] Length = 950 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/881 (64%), Positives = 699/881 (79%), Gaps = 6/881 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ + Y K A + Sbjct: 27 VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEVMGKYHPHG++AIYDAL RMAQDWSLR LIEGQGN+GS+DGDPPAA RYTECRL+K Sbjct: 87 GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL D+ K+TVDF+ NYDG QEPVVL A +PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGCVA+IDNP I L +MEII GPDFPTGA++LG+ GI++AY+TGRGS+++RG H E Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILLGKAGIQSAYSTGRGSLLMRGKVHTET 266 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 GDRE I+VTE+PYQVNKA M+EK+AELVR+KRI I+D+RDESDR+GYRVV+ELKR A Sbjct: 267 IRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRDA 326 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 SADVILNQLYR+T LQ+ F NMVALNG KPE+ TL+ +L AFVAFRE+VV RRTKYLL Sbjct: 327 SADVILNQLYRFTPLQTSFGANMVALNGGKPEQLTLMDMLSAFVAFREDVVNRRTKYLLR 386 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R W+A D+ L+ LIDD Sbjct: 387 KARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDDPR 446 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + I GT LSE Q RAIL+LRL RLT LGRD+I +EL +G EIK+ L+ILSSR+R++ Sbjct: 447 HRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTRVM 506 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK EL +++DE TPRRT + EG D+EDED I REDMVVTVSH GY+KRVPLSVYR+ Sbjct: 507 QIIKDELTAIRDEFATPRRTELSEGAADLEDEDLIPREDMVVTVSHGGYIKRVPLSVYRS 566 Query: 559 QRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKGRSG+ ++ DED VT LF+ +THT VLFFSS G VYKEKVWRLP+ +PQ RGKA Sbjct: 567 QRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLTTPQGRGKA 626 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L+N+L L + ERIT+I+P P +E + V+FAT G VRRNKLSDF +NR+GKIAMK Sbjct: 627 LVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMK 686 Query: 678 L-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +D IL V TC++++D+LLT GQC+RFP + +RVFAGRNSVGVRGISL K + V+ Sbjct: 687 LDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVV 746 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SMAI+ H DA +ER Y+K RR + GDT + ++ + I +ER EL + Sbjct: 747 SMAILRHVDASAEERATYLK----MRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAR 802 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ILTVSE G+GKR+SSY+FR S R GKGIRATD ++++++GALVA FPV + DQ++LV Sbjct: 803 EEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLV 862 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +D+G +IRVPV+ I + RAT GV IF TA ERVVSVERI Sbjct: 863 TDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSVERI 903 >gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] Length = 940 Score = 1149 bits (2973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 553/883 (62%), Positives = 693/883 (78%), Gaps = 7/883 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 21 IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL Sbjct: 81 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 141 EKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +A+++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY TGRGS+ +R Sbjct: 201 GEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYETGRGSVPMRAKVD 260 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ DR ++VTEIPYQVNK+ M+EKIAE+VR+KR+ I+D+RDESDR G RVVIELK Sbjct: 261 TEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDESDRSGMRVVIELK 320 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+LNQLYR++ LQ+ F NMVALNG KPE+ L +LKAFVAFREEV+ RRT+Y Sbjct: 321 RDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVAFREEVIQRRTRY 380 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL K RDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W A D++DLI LID Sbjct: 381 LLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWPARDVEDLIRLID 440 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT +GRD+I ELN +G EI + LDIL SR+ Sbjct: 441 DPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLDILRSRA 500 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I++ E+L +++E TPRRT I+EG D ++ED I REDMVVTVSH GY+KRVPL+ Sbjct: 501 RIQEIVRNEMLEIREEFATPRRTEIIEGGADFDEEDLIQREDMVVTVSHGGYIKRVPLAT 560 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KVWRLP+G P +RG Sbjct: 561 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPTSRG 620 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N+L L QGE+IT+I+P PEDE +W NL V+FAT G VRRNKLSDF+ INR+GKIA Sbjct: 621 KALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLSDFVNINRNGKIA 680 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D I+ V+TC++ +DI+LTT GQC+RFP + +RVFAGRNSVGVRGI LA GD++ Sbjct: 681 MKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVGVRGIRLADGDRI 740 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-DSSVEGNISEERCQELK 794 ISM I+ H D D +ER Y+K A R G+ +E + + D V G +S+ER E+ Sbjct: 741 ISMQILHHIDVDAEERAAYLKLSRAMR----GEADENGAAADEDGVVAGELSQERYAEMS 796 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 EQ ILT+SE G+GKRTSS+++R++ R GKGI A V+ N G L+A FPV D+DQI+ Sbjct: 797 AAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRN--GGLIASFPVEDSDQIM 854 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV+D G LIR PV IRIA RAT+GV+IF TA+DE+VV+VE I Sbjct: 855 LVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGI 897 >gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060] gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060] Length = 911 Score = 1146 bits (2964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/886 (62%), Positives = 695/886 (78%), Gaps = 6/886 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G ++KYVK A Sbjct: 19 IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPDRKYVKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG+YHPHG+ +IYDAL RMAQD+++R++L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 79 RIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDGDPPAAMRYTESRL 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL+D+ K+TVDF PNYD S EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 139 AKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGCVA+ID+P + ++AL EII GPDFPTG +ILGR G + AY TGRGS+V+R SH Sbjct: 199 GEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLILGRAGTRAAYMTGRGSVVMRAKSH 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ +RE +V TEIPYQVNKA+++EKIA+LVREKRI +ADLRDESDR G R+V+ELK Sbjct: 259 VEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDESDRDGMRIVVELK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +++AF+ FREEVV RRTK+ Sbjct: 319 RDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFIDFREEVVSRRTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR LM R W A+DI LI L+D Sbjct: 379 LLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDWPAADIAPLIALVD 438 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT LGRD++ +EL L EI + LDIL SR+ Sbjct: 439 DPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILRSRA 498 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+LGI+K EL V+ E TPR+T I + ++EDED I REDMVVTVSH GY+KRVPLS Sbjct: 499 RILGIVKAELAEVRAEYATPRKTEIQDWDSNVEDEDLIQREDMVVTVSHAGYIKRVPLST 558 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YKEKVWRLP+ +P ARG Sbjct: 559 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPLAAPNARG 618 Query: 616 KALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KAL+NIL L+Q GERITTIMP PEDE+SW L V+FAT GNVRRNKLSDF+Q+NR+GKI Sbjct: 619 KALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGKI 678 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD D I+ VE CT+ +D+LLTT GQC+RFP++ +RVF GR+S GVRGI+L K D+ Sbjct: 679 AMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGKDDR 738 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQ 791 VISM I+ H +A +ER Y++ +A RR + T+ + D ++ ++ +ER Sbjct: 739 VISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPEADGEETTASIDLGQERYI 798 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+ N G LVA FPV +D Sbjct: 799 DMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARN--GHLVASFPVEPSD 856 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 QI+LV++ G LIRVPV++IRI RA++GV +F+TAKDERVVSVE I Sbjct: 857 QIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 902 Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++ + G +R DF NR+GK K++E +V V + D ++L + Sbjct: 652 VMFATASGNVRRNKLSDFVQVNRNGK-----IAMKLDEGDHIVHVEICTEADDVLLTTAA 706 Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 G IR PV ++R+ R + GV + KD+RV+S+ +R E E Sbjct: 707 GQCIRFPVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPE 753 >gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] Length = 913 Score = 1143 bits (2956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/904 (62%), Positives = 696/904 (76%), Gaps = 12/904 (1%) Query: 8 SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD E+ K GI VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 2 SDSEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYA 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MHENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD AA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ II GPDFPTG +ILGR GI++ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIRS 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGSIV+RG I+ DRE IV++EIPYQVNKA+M+E+IAELVREK+I I+DL Sbjct: 242 AYHLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G+RVV+ELKR A +V+LNQLYR+T LQ+ F NMVAL+ +P+ L +L Sbjct: 302 RDESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P AR LM Sbjct: 362 LFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 422 RDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L IEI + LDIL SR+R+ IIK EL +VK E TPRRT IVE ++EDED I REDMV Sbjct: 482 LAIEIADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW L V+FAT G VRR Sbjct: 602 KEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKL + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF+GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLK 776 S+GVRGI+LAKGD+VIS++I+ H DA ER Y+K A RR +G + EE T Sbjct: 722 TSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEA 781 Query: 777 NDSS-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++++ + ++ E R E+ EQF+LTV+ +G+GKR+SS++FR+S R GKGIRATD +K+ Sbjct: 782 DEAAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKL 841 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 EIG LVA FPV +DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA DE VVSVE Sbjct: 842 GEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVE 901 Query: 896 RIRE 899 IRE Sbjct: 902 HIRE 905 >gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] Length = 941 Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/888 (62%), Positives = 695/888 (78%), Gaps = 6/888 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ K Y K A + Sbjct: 39 NISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLDHTKSYRKSAAV 98 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEVMGKYHPHG+++IYDAL RMAQD+++R +LI+GQGNFGS+DGD PAA RYTECRL + Sbjct: 99 IGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSIDGDKPAAMRYTECRLAR 158 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LLDD+ K+TVDF+ NYDGS +EP+VL ARYPN+LVNG GGIAVGMATNIP HNLGE Sbjct: 159 ISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLGE 218 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DGC+A+ID PDI+L LME+I GPDFPTG +ILGR GIK+AY TGRGS+++RG +HIE Sbjct: 219 VIDGCLAMIDKPDIELAELMELIPGPDFPTGGMILGRAGIKSAYETGRGSVIMRGKAHIE 278 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DRE I++ E+PYQVNKA+M+EKIAELVR+KRI I+ +RDESDRQGYRVVIE+KR Sbjct: 279 TSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAVRDESDRQGYRVVIEVKRD 338 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A AD++LNQLYRYT LQS F N+VALNG KPE+ L+ +L+AFV FREEVV RRTK+LL Sbjct: 339 AVADIVLNQLYRYTPLQSSFGCNLVALNGGKPEQMNLVDMLRAFVGFREEVVTRRTKFLL 398 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NK R RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+ LI LIDD Sbjct: 399 NKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLMERRWPAKDVAPLIALIDDP 458 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + I DGT LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R+ Sbjct: 459 RHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNLIGAEIADYLDILSSRARV 518 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L I++ EL V++E PRRT I++ + +DED I RE+MVVTV+H GY+KRVPL+ YR Sbjct: 519 LDIVRTELGEVREEFANPRRTEIIDSGYEHDDEDLIAREEMVVTVTHGGYIKRVPLAAYR 578 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ RGGKGRSG+ +DEDFVT LF+V+THT VLFFS+ G YK KVW+LP+ PQ RGKA Sbjct: 579 AQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIAYKLKVWKLPLAQPQGRGKA 638 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L L GE ITTIMP PEDE SW++L V+FAT G VRRNKLSDF+Q+NR+GKIAMK Sbjct: 639 MVNLLPLQAGETITTIMPLPEDEGSWDSLDVMFATTRGTVRRNKLSDFVQVNRNGKIAMK 698 Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D I+ VE C+ +D+LLT+ G +RFP+ +RVF RNSVGVRGI + D VI Sbjct: 699 LDDENDGIIGVEVCSASDDVLLTSSAGYGIRFPVDDVRVFNSRNSVGVRGIRMGASDHVI 758 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEERCQ 791 SMAI+ A +ER+ Y+K SA RR S D E + + + +V ++ EER Sbjct: 759 SMAIMRGFAATPEERVSYIKQASALRRAASADDGEDADLDVVADDEEVTVASSLPEERYI 818 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQFILT++++G+GKR+SSYDFR S R GKGI+ TDVSK EIG LV FPV D+D Sbjct: 819 EMGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKGIKVTDVSKEGEIGQLVGAFPVEDSD 878 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 QI+LVS+ G LIRVPV+ IR ASR+TKGV +F TAKDE VV+VERI E Sbjct: 879 QIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAVERISE 926 >gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] Length = 904 Score = 1138 bits (2944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/903 (61%), Positives = 694/903 (76%), Gaps = 9/903 (0%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + D I VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G E Sbjct: 8 ADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFE 67 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 WNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PA Sbjct: 68 WNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPA 127 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGM Sbjct: 128 AMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGAGGIAVGM 187 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILG+ GI++AY GRG Sbjct: 188 ATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIILGKQGIRSAYHLGRG 247 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 SIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVR+K+I I+DLRDESDR Sbjct: 248 SIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDLRDESDRD 307 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 GYRVV+ELKR A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L FVAFRE Sbjct: 308 GYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLTVFVAFRE 367 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D Sbjct: 368 NVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMSRDWPAKD 427 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ ++ LIDD + I +DGT LS Q +AIL+LRL RLT LGRD+I +EL+ L +EI + Sbjct: 428 VETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDKLAVEIAD 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL SR+R+ GI++ EL +VK+E TPRRT IV+ ++EDED I REDMVVTVSH G Sbjct: 488 YLDILRSRARVQGIVRDELTAVKNEFATPRRTVIVDQEGEVEDEDLIQREDMVVTVSHAG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKRVPLS YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRL Sbjct: 548 YVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ +P ARGKALINIL + QGERITTIMP PEDESSW+ L V+FAT GNVRRNKLSDF+ Sbjct: 608 PMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRRNKLSDFV 667 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + RSG IAMKLD + I+ V+ + +D+LLT GQC+RFP++ +RVF GR S+GVRG Sbjct: 668 DVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGRTSMGVRG 727 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD++IS+ I+ H D + DER Y++ +A RR G +E + +++ + Sbjct: 728 INLGDGDKLISLTILRHMDVNADERAAYLRRANAVRR--GGVEDEAGTDSEEATGAIELG 785 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+R E+ EQF+LT+SE G+GKRTSSY++R + R GKGI A V+ N G LVA FP Sbjct: 786 EQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRN--GKLVASFP 843 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V D+DQI+LV+DKG LIR PV +IRIA R+T+GV +F+T+ DERVVSVE + DE Sbjct: 844 VEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVE-----HLTDEG 898 Query: 907 EST 909 E + Sbjct: 899 EQS 901 >gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] Length = 913 Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 561/889 (63%), Positives = 691/889 (77%), Gaps = 4/889 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G EWNK Y K Sbjct: 17 GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD AA RYTE R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HN Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+D CVA+ID+P + +D L++II GPDFPTG +ILGR GI++AY GRGSIV+RG Sbjct: 197 LGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIILGRQGIRSAYHLGRGSIVMRGKV 256 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I+ DRE IVV+EIPYQVNKA+M+E+IAELVREK+I I+DLRDESDR+G+RVV+EL Sbjct: 257 SIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLRDESDREGFRVVVEL 316 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +++LNQLY+YT LQ+ F NMVAL+ +P+ L +L F+AFRE+VV RRTK Sbjct: 317 KRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGRPQVMNLKDLLTLFIAFREQVVTRRTK 376 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 +LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P AR LM R W A D+ +I LI Sbjct: 377 FLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMITLI 436 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ L IEI + LDIL SR Sbjct: 437 DDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILRSR 496 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +R+ IIK EL +VK E TPRRT IVE ++EDED I REDMVVTVSH GYVKRVPLS Sbjct: 497 ARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 556 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ+RGGKGRSG+ RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P AR Sbjct: 557 TYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNAR 616 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALINIL L+QGERITTIMP PEDESSW +L V+FAT G VRRNKLSDF+ + RSG I Sbjct: 617 GKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKLSDFVDVRRSGII 676 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF+GR S+GVRGI+LAKGD+ Sbjct: 677 AMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDR 736 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKNDSS-VEGNISEERC 790 VIS++I+ H DA ER Y+K A RR +G + EE T ++++ + ++ E R Sbjct: 737 VISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRY 796 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQF+LTV+ G+GKR+SS++FR+S R GKGIRATD +K+ EIG LVA FPV + Sbjct: 797 VEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMS 856 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA E VVSVE IRE Sbjct: 857 DQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSVEHIRE 905 >gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] Length = 938 Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/896 (61%), Positives = 697/896 (77%), Gaps = 10/896 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 20 IKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGDP AA RYTECRL Sbjct: 80 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECRL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LLDD+ K+TVDF+ NYD S EPVVL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 140 EKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +AV++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T RGSIV+R Sbjct: 200 GEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMILGRSGIRSAYETARGSIVMRAKVD 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ DR ++VTEIPYQVNK+ M+EKIAELVR+KRI I+D+RDESDR G RVVIELK Sbjct: 260 VEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRDESDRSGMRVVIELK 319 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DVILNQLYR++ LQ+ F N+VALNG KPE+ L +L+AFV+FREEV+ RRT+Y Sbjct: 320 RDAVPDVILNQLYRFSQLQTSFGANIVALNGGKPEQMNLSDMLRAFVSFREEVIQRRTRY 379 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W A D++ LI LID Sbjct: 380 LLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMERNWPAKDVESLILLID 439 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT +GRD+I ELN +G EI + L+IL SR+ Sbjct: 440 DPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAEISDYLEILRSRA 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I++ E+L +K E TPRRT I+EG D ++ED I REDMVVTVSH GY+KRVPL+ Sbjct: 500 RIQEIVRNEMLEIKQEFATPRRTEIIEGGPDFDEEDLIQREDMVVTVSHGGYIKRVPLAT 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KVWRLP+G P +RG Sbjct: 560 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPTSRG 619 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGE+IT+I+P PEDE SW NL V+FAT G +RRNKLSDF+ INR+GKIA Sbjct: 620 KALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNKLSDFVNINRNGKIA 679 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D I+ V+TC++ +D++LTT GQC+RFP++ +RVFAGRNSVGVRGI LA D+V Sbjct: 680 MKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNSVGVRGIRLADEDRV 739 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS-VEGNISEERCQELK 794 ISM I+ H D +ER Y+K A R G+ +E + ++ V G++ +ER ++ Sbjct: 740 ISMQILHHIDVSAEERAAYLKLSRAMR----GEADENGNGADEEGVVAGDLPQERYAQMS 795 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 EQ ILT+SE G+GKRTSS+++R++ R GKGI A V+ N G L++ FPV D+ QI+ Sbjct: 796 AAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRN--GGLISSFPVEDSHQIM 853 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 LV+D G LIR PV+ IRIA RAT+GV++F TA DE+VV+VE I E VDE + E Sbjct: 854 LVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISE---VDEDDVLE 906 >gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278] gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp. ORS278] Length = 916 Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/916 (61%), Positives = 698/916 (76%), Gaps = 19/916 (2%) Query: 8 SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+E+EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 2 SDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++Y AL RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDDL KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+ DNP + +D L +II GPDFPTG +ILGR GI++ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIRS 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG I+ DRE I++TEIPYQVNKA+M+E+IAELVREK+I I+DL Sbjct: 242 AYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVV+ELKR A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L+ Sbjct: 302 RDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLLQ 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D+ +I LIDD + I DGT LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 422 RDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL SR+R+ I+K EL ++K E TPRRT I E +MEDED I REDMV Sbjct: 482 LAVEIADYLDILRSRARVQDIVKTELSAIKAEFATPRRTVIAEQEGEMEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY KRVPLS YRAQRRGGKGR+G+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPI +P RGKALINIL L QGERITTIMP PEDESSW NL V+FAT GNVRR Sbjct: 602 KEKVWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD +EI++V+ CT+ +D+LLT GQC+RFP++ +RVF GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+LA+GD++IS+ I+ H + DER Y+K RR +SG+T ++ + Sbjct: 722 TSMGVRGIALAEGDKLISLTILRHVETTSDERTAYLK----MRRAMSGETAAEEPVETEG 777 Query: 780 SVEG----NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +S+ER E+ +EQ +LTVS G+GKRTSSY++R + R GKGI A V+ Sbjct: 778 EEAAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNR 837 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE Sbjct: 838 N--GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVE 895 Query: 896 RI-RESEIVDEAESTE 910 I E+E + A TE Sbjct: 896 HIGEEAENGNGANGTE 911 >gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1] gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1] Length = 913 Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/908 (61%), Positives = 699/908 (76%), Gaps = 18/908 (1%) Query: 8 SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+++EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 2 SDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR+GI++ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIRS 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+DL Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + L+IL SR+R+ I+K EL +VK E TPR+T IVE ++EDED I REDMV Sbjct: 482 LAVEIADYLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVRR Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG------DTEEIT 773 S+GVRGI+L+ GD+VIS++I+ H +A ER Y+K A RR +G +T E+ Sbjct: 722 TSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEVE 781 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + D+S +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 782 AEEGDTSAA--LSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVN 839 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVS Sbjct: 840 GRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVS 897 Query: 894 VERIRESE 901 VERI E++ Sbjct: 898 VERIPETD 905 >gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] Length = 925 Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/892 (61%), Positives = 698/892 (78%), Gaps = 8/892 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 17 IKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNENGYEWNKPYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS+DGD AA RYTECRL Sbjct: 77 RVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSIDGDRAAAMRYTECRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LLDD+ KDTVDF+ NYD S EPVVL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 EKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +AV+ NP + + LM+I+ GPDFPTG +ILGR+GI++AY +GRGS+V+R Sbjct: 197 GEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRSAYESGRGSVVMRSKVD 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ DR ++V+EIPYQVNK++M+EKIAE VR+KRI I+D+RDESDR G RVVIELK Sbjct: 257 VEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDIRDESDRSGMRVVIELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+LNQLYRY+ LQ+ F NMVALNG KPE+ L ILKAF++FREEVV RRTK+ Sbjct: 317 RDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILKAFISFREEVVQRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAH+LVGL IAVAN+DEV+ +IR +P+P TAR +LM+R W A D++ LI LID Sbjct: 377 LLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLMERDWPARDVEPLIRLID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT LGRD+I +EL+ +G EI + LDIL SR+ Sbjct: 437 DPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSKIGAEISDFLDILRSRA 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I++ E+L +K+E TPR+T IV+G D +DED I REDMVVTVSH GY+KRVPL+ Sbjct: 497 RIQDIVRGEMLEIKEEFATPRKTEIVDGGADFDDEDLIQREDMVVTVSHNGYIKRVPLAT 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KVWRLP+G P +RG Sbjct: 557 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKVWRLPLGGPISRG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L QGE+I++IMP PEDE SW NL V+F+T G VRRNKLSDF QINR+GKIA Sbjct: 617 KALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRRNKLSDFTQINRNGKIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D I++V TC++ +D++LTT GQC+RFP+ +RVFAGRNSVGVRGI LA GD+V Sbjct: 677 MKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGRNSVGVRGIRLADGDKV 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM I+ H DA+ +ER ++K MS R + G+ +E +V+ +S+ER E+ Sbjct: 737 ISMQILHHMDAEAEERTAFLK-MS---RALRGEADENAGSDETGAVDAGLSQERYAEMSA 792 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 EQ ILT+SE G+GKRTSS+++R++ R GKGI A V++ N G LV+ FPV ++DQI+L Sbjct: 793 AEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERN--GGLVSSFPVEESDQIML 850 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V++ G LIR PV+ IRIA RAT+GV++F TA E VV+VE I SE+ DE + Sbjct: 851 VTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGI--SEVDDEED 900 >gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 913 Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/906 (61%), Positives = 690/906 (76%), Gaps = 14/906 (1%) Query: 8 SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+++EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 2 SDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK+Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRA 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I DL Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + L+IL SR+R+ I+K EL VK E TPRRT I E ++EDED I REDMV Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVRR Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L+ GD VIS++I+ H +A ER Y+K A RR +G+ E Sbjct: 722 TSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAE 781 Query: 780 SVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + EG+ +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 782 AEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSR 841 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVSVE Sbjct: 842 N--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVE 899 Query: 896 RIRESE 901 RI E++ Sbjct: 900 RIPETD 905 >gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1] gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1] Length = 913 Score = 1135 bits (2935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/906 (61%), Positives = 690/906 (76%), Gaps = 14/906 (1%) Query: 8 SDEEEEKG--------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+++EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G Sbjct: 2 SDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK+Y K AR G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRA 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I DL Sbjct: 242 AYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVVIEL+R A +V+LNQLY++T LQ+ F NMVAL G +P+ L +L Sbjct: 302 RDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 VFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + L+IL SR+R+ I+K EL VK E TPRRT I E ++EDED I REDMV Sbjct: 482 LAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLP+ P RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT GNVRR Sbjct: 602 KEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF+GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+L+ GD VIS++I+ H +A ER Y+K A RR +G+ E Sbjct: 722 TSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEAE 781 Query: 780 SVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + EG+ +S+ER E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A V+ Sbjct: 782 AEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSR 841 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F+TA DE+VVSVE Sbjct: 842 N--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVE 899 Query: 896 RIRESE 901 RI E++ Sbjct: 900 RIPETD 905 >gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] Length = 914 Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/887 (62%), Positives = 690/887 (77%), Gaps = 8/887 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +KYVK A Sbjct: 18 IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPERKYVKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG+YHPHG+ +IYDAL RMAQD+++RL+L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 78 RIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMRYTESRL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL+D+ K+TVDF PNYD S EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 138 AKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++GC+A+ID+P + ++ L EII GPDFPTG ILGR G + AY TGRGS+++R SH Sbjct: 198 GEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQILGRAGTRAAYMTGRGSVIMRAKSH 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ +RE +V TEIPYQVNKA+++EKIAELVR+KRI ++DLRDESDR G R+V+ELK Sbjct: 258 VEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGMRIVVELK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +++AF+ FREEVV RRTK+ Sbjct: 318 RDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFIDFREEVVSRRTKF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR LM R W A DI LI L+D Sbjct: 378 LLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDIAPLIALVD 437 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LS+ Q RAIL+LRL RLT LGRD++ +EL L EI + LDIL SR+ Sbjct: 438 DPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDILRSRA 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+LGI+K EL V+ E TPRRT I + +EDED I REDMVVTVSH GY+KRVPLS Sbjct: 498 RILGIVKAELAEVRAEFATPRRTEIQDWDSTVEDEDLIQREDMVVTVSHAGYIKRVPLST 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YKEKVWRLP+ +P ARG Sbjct: 558 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPLAAPNARG 617 Query: 616 KALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KAL+NIL L+ GERITTIMP PEDE+SW L V+FAT G+VRRNKLSDF+Q+NR+GKI Sbjct: 618 KALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRRNKLSDFVQVNRNGKI 677 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD D I+ VE CT+ +D+LLTT GQC+RFP++ +RVF GR+S GVRGI+L GD+ Sbjct: 678 AMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDSTGVRGINLGSGDR 737 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK----NDSSVEGNISEERC 790 VISM I+ H +A +ER Y++ +A RR +G+ E+ + +++ ++ +ER Sbjct: 738 VISMTILRHFEATPEERQAYLRRANADRR-ATGEAIELPATPEADGEETAASIDLDQERY 796 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+ N G LVA FPV + Sbjct: 797 IAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRN--GHLVASFPVETS 854 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQI+LV++ G LIRVPV++IRI RA++GV +F+TAKDERVVSVE I Sbjct: 855 DQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 901 >gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] Length = 905 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/882 (62%), Positives = 684/882 (77%), Gaps = 4/882 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK Y K A Sbjct: 17 IKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL Sbjct: 77 RTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 QKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILGR GI++AY GRGSIV+RG Sbjct: 197 GEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRSAYHLGRGSIVMRGKVS 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE DRE IVV+EIPYQVNKA M+E+IAELVR+K+I ++DLRDESDR+GYRVV+ELK Sbjct: 257 IETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDLRDESDREGYRVVVELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+LNQLY++T LQ+ F NMVAL+G +P+ L +L FVAFRE VV RRTK+ Sbjct: 317 RDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLTVFVAFRENVVSRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+P TAR LM R W A D++ ++ LID Sbjct: 377 LLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMSRDWPARDVETMMMLID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I DGT LS Q +AIL+LRL RLT LGRD+I EL+ L +EI + LDIL SR+ Sbjct: 437 DPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDKLAVEIADYLDILRSRA 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I++ EL ++K+E TPRRT I++ ++EDED I REDMVVTVSH GYVKRVPLS Sbjct: 497 RVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ R+EDFV LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARG Sbjct: 557 YRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPSARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALINIL + QGERITTIMP PEDESSW L V+FAT GNVRRNKLSDF+ + RSG IA Sbjct: 617 KALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRRNKLSDFVDVRRSGIIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL + I+ V+ C + +D+LLT GQC+RFPI+ +RVF GR S+GVRGI+L +GD++ Sbjct: 677 MKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGRTSMGVRGITLGEGDRL 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 IS+ I+ H D DER Y++ +A RR G +E + +++ + E+R E+ Sbjct: 737 ISLTILRHMDVSADERAAYLRRANAVRR--GGADDEAGTDHEEATGAIELGEQRYVEMSA 794 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 EQF+LT+SE G+GKR+SSY++R + R GKGI A V+ N G L+ FPV+D+DQI+L Sbjct: 795 NEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRN--GKLIGSFPVDDSDQIML 852 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+DKG LIR PV +IRI R+T+GV +F+TA DERVVSVER+ Sbjct: 853 VTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERL 894 >gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] Length = 913 Score = 1131 bits (2925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/902 (62%), Positives = 690/902 (76%), Gaps = 4/902 (0%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 TE S + GI VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M Sbjct: 4 TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + G EWNK Y K AR G+V+GKYHPHG+ ++YDAL RMAQ +S+R+ LI+GQGNFGSVD Sbjct: 64 ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GD AA RYTE RL K A LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ I+ GPDFPTG +ILGR GI++AY Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIILGRQGIRSAY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRGSIV+RG IE DRE I+++EIPYQVNKA M+E+IAELVR+KRI I+DLRD Sbjct: 244 HLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G+RVV+ELKR A +V+LNQLYRYT LQ+ F NMVAL+ +P+ L +L F Sbjct: 304 ESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +AFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R Sbjct: 364 IAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRD 423 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ +I LIDD + DGT LS Q +AIL+LRL RLT LGR++I EL+ L Sbjct: 424 WPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 IEI + LDIL SR+R+ IIK EL +VK E TPR+T I+E ++EDED I REDMVVT Sbjct: 484 IEIADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GYVKRVPLS YRAQ+RGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKE Sbjct: 544 VSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLP+ +P ARGKA+INIL L QGERITTIMP PEDESSW NL V+FAT G VRRNK Sbjct: 604 KVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNK 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF+ + RSG IAMKL + I+ V+ CT+ +D+LLT GQC+RFP S +RVF+GR S Sbjct: 664 LSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTS 723 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKND 778 +GVRGI+LA+GD+VIS++I+ H DA ER Y+K A RR +G + EE T ++ Sbjct: 724 MGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783 Query: 779 SS-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ++ + ++ E R E+ EQF+LTV+ +G+GKR+SS++FR+S R GKGIRA+D +K+ E Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGE 843 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IG LVA FPV +DQI+LVSD G LIRVPV IRI SRA+KGV +F+TA+ E VVSVE I Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHI 903 Query: 898 RE 899 RE Sbjct: 904 RE 905 >gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] Length = 915 Score = 1130 bits (2922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/903 (62%), Positives = 698/903 (77%), Gaps = 17/903 (1%) Query: 8 SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+E+EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ Sbjct: 2 SDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYS 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGDPPAA RYTE +L K+A LLDD+ KDTVDF+ NYD S +EP VL A++PN+LVNG Sbjct: 122 VDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNL EV+D CVA+IDNP I +D L +II GPDFPTG +ILGR GI++ Sbjct: 182 GGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIRS 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY GRGSI++RG I+ DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+DL Sbjct: 242 AYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR GYRVVIELKR A ADV+LNQLY++T LQ+ F+ NM+AL+G +P+ TL +L Sbjct: 302 RDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE VV RRTK+LLNKARDRAH+LVGLA+AVAN+DE++R+IR SPNP +AR LM Sbjct: 362 IFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A D++ +I LIDD + + DGT+ LS Q +AIL+LRL RLT LGR++I +EL+ Sbjct: 422 RDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L IEI + L+IL SR+R+ IIK EL +VK E TPRRT I+E ++EDED I REDMV Sbjct: 482 LKIEIADYLEILRSRARVQDIIKTELAAVKAEFGTPRRTAIIEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY KRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPI +P +RGKALINIL L QGERITTIMP PEDESSW NL V+FAT GNVRR Sbjct: 602 KEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD +EI++V+ CT+ +D+LLT GQC+RFP++ +RVF GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S+GVRGI+LA+GD+VIS++I+ H + DER Y+K RR +SG+T ++ + Sbjct: 722 TSMGVRGIALAEGDKVISLSILRHVETTSDERTAYLK----MRRAMSGETTTEEPVETEG 777 Query: 780 SVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +S+ER E+ +EQ +LTVS G+GKRTSSY++R + R GKGI A V+ N Sbjct: 778 EEAAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN 837 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE Sbjct: 838 --GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEH 895 Query: 897 IRE 899 I E Sbjct: 896 IGE 898 >gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 887 Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/881 (62%), Positives = 677/881 (76%), Gaps = 6/881 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK+Y K AR G+V+GK Sbjct: 1 MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL K A LLD Sbjct: 61 YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D C+A Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG IE DRE Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDRE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I+V+EIPYQVNKA M+E+IAELVREK+I I DLRDESDR G+RVVIEL+R A +V+L Sbjct: 241 AIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLY++T LQ+ F NMVAL G +P+ L +L FVAFRE+VV RRTK+LLNKARDRA Sbjct: 301 NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A+D+ +I LIDD + + D Sbjct: 361 HILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNPD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LS Q +AIL+LRL RLT LGR++I EL+ L +EI + L+IL SR+R+ I+K E Sbjct: 421 GTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVKTE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L VK E TPRRT I E ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK Sbjct: 481 LGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ P RGKALINIL L Sbjct: 541 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QGERITTIMP PEDE+SW+ L V+FAT GNVRRNKLSDF+ + RSG IAMKLD + I Sbjct: 601 EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAI 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + V+ CT+ +D+LLT GQC+RFP+ +RVF+GR S+GVRGI+L+ GD VIS++I+ H Sbjct: 661 VDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHF 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQELKLKEQFI 800 +A ER Y+K A RR +G+ E + EG+ +S+ER E+ EQF+ Sbjct: 721 EATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFV 780 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT+SE G+GKRTSS+++R + R GKGI A V+ N G LVA FPV D+DQI+LV+D G Sbjct: 781 LTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRN--GKLVASFPVEDSDQIMLVTDNG 838 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 LIR PV IR+A R+T+GV++F+TA DE+VVSVERI E++ Sbjct: 839 QLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETD 879 >gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1] gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1] Length = 965 Score = 1118 bits (2891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 547/898 (60%), Positives = 686/898 (76%), Gaps = 12/898 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ + ++I DEM++SYL YA++VI+ RA+PD RDGLKPVHRRILF M + G +WNK Y Sbjct: 65 ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ +IYDAL RMAQD+S+RL L++GQGNFGSVDGDPPAA RYTE Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH LL+D+ K+T+DF+ NYDG+ +EPVVL A PN+LVNG GIAVGMATNIP Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D C+A+IDNPDI +D L+E + PDFPTG ++LGR G + AY TG+GS+V+RG Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIMLGRQGARLAYHTGKGSVVVRG 304 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 E+ DR+ I+++EIPYQVNKA+M+EKIA+LVREKRI IADLRDESDR G RVV+ Sbjct: 305 RVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVVV 364 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R A DV+LNQLYR++ LQ F NM+AL+ +PE L L+ FVAFREEV+ RR Sbjct: 365 ELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGRPELMNLKQFLEIFVAFREEVISRR 424 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ LNKARDRAHVLVGLAIAVAN+DEV+++IR +P+P +AR LM R W A DI LI Sbjct: 425 TKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPLIA 484 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LIDD + + DGT+ +SE Q RAILELRL RLT LGRD+I +EL LG I++ L IL Sbjct: 485 LIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSILR 544 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+R+L I++ EL ++K E TPRRT I E D EDED I REDMVVTVSH GY+KRVP Sbjct: 545 SRARVLDIMRTELTAIKAEFATPRRTEIAESESDFEDEDLIQREDMVVTVSHQGYIKRVP 604 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQRRGGKGRSG+ +DEDFVT LF+ +THT +LFFSS G VYK KVWRLP +PQ Sbjct: 605 LSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLKVWRLPQSTPQ 664 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGKA+INIL L+ GE ITT+MP PEDE+SW++L+V+FAT+ G+VRRNKLSDF+QINR+G Sbjct: 665 ARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKLSDFVQINRNG 724 Query: 673 KIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 KIAMK D+ D I+ V+ CT+E+D+LLT G+CVRFP++ +RVF+ R S GVRGI L Sbjct: 725 KIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSRKSTGVRGIRL 784 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG------ 783 D++I+M+I+ H D E Y+K +A RR +SG+ EE + ++ Sbjct: 785 GDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEAEEGEEEAAEE 844 Query: 784 -NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +S ER EL +EQF+LTVSEKGFGKR+SSYD+R S R GKGI A V+ N G LV Sbjct: 845 MTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRN--GNLV 902 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 A FPV+ DQI+LV+D G LIR PV+++R A RAT+GV IF TA DERVVSVER+ E+ Sbjct: 903 ASFPVDVQDQIMLVTDAGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSVERVEET 960 >gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 909 Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 562/893 (62%), Positives = 681/893 (76%), Gaps = 7/893 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +KKYVK A Sbjct: 17 IRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 77 RVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAA LL D+ KDTVDF+PNYD + EP VL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 TKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D CVA+IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY GRGSIV+RG Sbjct: 197 GEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVA 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +RE +++TEIPYQVNKA M+E+IAELV+EK+I I DLRDESDR GYRVVIELK Sbjct: 257 IETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYR+T LQ+ F VNMVAL+ +P L +L FV FRE VV RRTK+ Sbjct: 317 RDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D++D++ LID Sbjct: 377 LLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + I DGT+ LS Q RAIL+LRL RLT LGRD+IR+EL+ L EI + LDIL SR Sbjct: 437 DPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRE 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+LGIIK EL VK E TPRRT I+E ++EDED I REDMVVTVSH GYVKRVPLS Sbjct: 497 RVLGIIKTELAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSA 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGR+G+ RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARG Sbjct: 557 YRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALINIL L QGERITTIMP PEDES+W NL V+FAT GNVRRNKLSDF+ + RSG IA Sbjct: 617 KALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD + I+ V+ CT+ +D+LLT GQC+RFP++ +RVF GR S+GVRGI+L +GD+V Sbjct: 677 MKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKV 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 IS+AI+ H + DER Y+K A + + + ++S +++ER E+ Sbjct: 737 ISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSA 796 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 EQ +LTVS G+GKRTSSY++R + R GKGI A V+ N G LVA FPV D DQI+L Sbjct: 797 AEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIML 854 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 V+DKG LIR PV IRIA R+T+GV++F TA+DE VVSVE I E EAES Sbjct: 855 VTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE-----EAES 902 >gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4] gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4] gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4] gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens DM4] Length = 911 Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 556/886 (62%), Positives = 676/886 (76%), Gaps = 10/886 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF + G ++YVK A Sbjct: 19 IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILFAAHESGHLPERRYVKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDP AA RYTE RL Sbjct: 79 RIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPAAAMRYTESRL 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 139 AKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D C+A+ID+P + ++AL EI+ GPDFPTG +ILGR G + AYATGRGSI++R SH Sbjct: 199 GELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLILGRAGTRQAYATGRGSIIMRAKSH 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +RE ++ TEIPYQVNKA ++EKIAELV+EKR+ I+DLRDESDR G R+V+E+K Sbjct: 259 IEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRDGMRIVVEIK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+LNQLYRYT LQS F NMVALNG +PE L +L AF FREEVV RRTK+ Sbjct: 319 RDAMAEVVLNQLYRYTPLQSSFGCNMVALNGGRPELMNLKDLLLAFNDFREEVVSRRTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR LM R W A DI LI L+D Sbjct: 379 LLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLIALVD 438 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D Y + DGT LSE+Q RAIL+LRL RLT LGRD++ +EL L EI + LDIL SR Sbjct: 439 DPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDELKKLADEIADYLDILRSRV 498 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I+K EL V+ TPR+T I++ +EDED I REDMVVTVSH GYVKRVPLS Sbjct: 499 RIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLST 558 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ STHT VLFFS G YKEKVWRLP+ +P ARG Sbjct: 559 YRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKVWRLPMAAPNARG 618 Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KAL+NIL L N+GERI+TIMP PEDE+SW+ L V+FAT GNVRRNKLSDF +NR+GKI Sbjct: 619 KALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATASGNVRRNKLSDFTTVNRNGKI 678 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD D I+ VE C E ++LLTT LGQC+RFP+ +RVF GR+S GVRGI+LA+ D+ Sbjct: 679 AMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGINLAQDDK 738 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT---EEITSLKNDSSVEGNISEERCQ 791 VISMAI+ DA +ER Y+K RR + GD E + ++S IS ER Sbjct: 739 VISMAILNAFDASPEERAGYLK----MRRAVIGDAGEAEAEPAEAEEASEASAISLERYN 794 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+ EQF+LT+S++GFGKR+SSY++R S R GKGI A V+ N G LVA FPV +D Sbjct: 795 EMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNLVASFPVEASD 852 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 QI+LV++ G LIRVPV++IRI RA++GV +F+T K ERVVSVE I Sbjct: 853 QIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 898 >gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] Length = 910 Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/884 (62%), Positives = 679/884 (76%), Gaps = 8/884 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ + G +KYVK A Sbjct: 16 IRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 76 RIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF PNYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 136 AKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D CVA+ID+P + ++ L EI+ GPDFPTG +ILGR G + AYATGRGS+++R SH Sbjct: 196 GELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMILGRAGTRQAYATGRGSVIMRAKSH 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ +RE ++ TEIPYQVNKA ++EKIAELV+EKR+ I+DLRDESDR G R+V+E+K Sbjct: 256 VEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRSGMRIVVEIK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYR+T LQS F NMVALNG +PE L +L+AFV FREEVV RRTK+ Sbjct: 316 RDAMADVVLNQLYRFTPLQSSFGCNMVALNGGRPELMNLKDLLQAFVDFREEVVSRRTKF 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P AR LM R W A DI LI L+D Sbjct: 376 LLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGRDWPAHDIAPLIALVD 435 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT LGRD++ +EL +L EI + LDIL SR+ Sbjct: 436 DPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTLADEIADYLDILRSRA 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ GI+K EL V+++ TPR+T IV+ +EDED I REDMVVTVSH GYVKRVPLS Sbjct: 496 RIQGIVKGELAEVREQFATPRKTEIVDFDGSVEDEDLIAREDMVVTVSHAGYVKRVPLST 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLFFSS G YKEKVWRLP+ +P ARG Sbjct: 556 YRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKVWRLPMAAPNARG 615 Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KAL+NIL L + ERITTIMP PEDE+SW L V+FAT GNVRRNKLSDF +NR+GKI Sbjct: 616 KALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRRNKLSDFTTVNRNGKI 675 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD D I+ VE C + ++LLTT LGQC+RFP+ +RVF GR+S GVRGI L K D+ Sbjct: 676 AMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGILLGKDDK 735 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDSSVEGNISEERCQEL 793 VISM I+ DA +ER Y+K RR ++G++EE + D + IS +R E+ Sbjct: 736 VISMTILNAFDATAEERAGYLK----MRRAVTGESEENGDAEAEDGAEAAAISLDRYNEM 791 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQ++LT+SE+GFGKR+SS+++R S R GKGI A V+ N G+LVA FPV +DQI Sbjct: 792 GAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARN--GSLVASFPVEASDQI 849 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +LV+D G LIRVPV++IRI RA++GV +F+TAKDE+VVSVE I Sbjct: 850 MLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVVSVEHI 893 >gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] Length = 908 Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/885 (62%), Positives = 678/885 (76%), Gaps = 9/885 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ + G +KYVK A Sbjct: 19 IKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G+YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 79 RIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESRL 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL D+ K+TVDF+ NYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 139 ARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VD CVA+ID+P + ++AL EI+ GPDFPTG +ILGR G + AY TGRGSI++R SH Sbjct: 199 GELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYTTGRGSIIMRARSH 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ +RE ++ TEIPYQVNKA ++EKIAELV++KRI I+DLRDESDR G R+V+E+K Sbjct: 259 VEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDESDRDGMRIVVEIK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYRYT LQ+ F NMVALNG +PE L +L AF FREEVV RRTK+ Sbjct: 319 RDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFNDFREEVVSRRTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR LM R W A DI LI L+D Sbjct: 379 LLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLIALVD 438 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LSE Q RAIL+LRL RLT LGRD+I +EL L EI + LDIL SR+ Sbjct: 439 DPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLADEIADYLDILRSRA 498 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I+K EL V++ TPR+T I++ +EDED I REDMVVTVSH GYVKRVPLS Sbjct: 499 RIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTVSHAGYVKRVPLST 558 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ RDEDFVT LF+ +THT VLFFS G YKEKVWRLP+ +P ARG Sbjct: 559 YRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEKVWRLPVAAPNARG 618 Query: 616 KALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KAL+NIL L N+GERITTIMP PEDE+SW L V+FAT GNVRRNKLSDF+Q+NR+GKI Sbjct: 619 KALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFVQVNRNGKI 678 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKLD D I+ VE C + ++LLTT LGQC+RFP+ +RVF GR+S GVRGI+L K D+ Sbjct: 679 AMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDSTGVRGINLGKDDK 738 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLKNDSSVEGNISEERCQE 792 VISMAI+ DA +ER Y+K RR + GD+ E + + + + IS ER + Sbjct: 739 VISMAILNAFDASPEERAGYLK----MRRAVIGDSGEEGTENGEAEEASAAAISPERYTQ 794 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + EQF+LT+SE+GFGKR+SSY++R S R GKGI A V+ N G LVA FPV +DQ Sbjct: 795 MGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNLVASFPVEASDQ 852 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 I+LV++ G LIRVPV++IRI RA++GV +F+T K ERVVSVE I Sbjct: 853 IMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 897 >gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] Length = 925 Score = 1113 bits (2880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 564/919 (61%), Positives = 697/919 (75%), Gaps = 30/919 (3%) Query: 8 SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+++EK I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFG Sbjct: 2 SDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDDL KDTVD++ NYDGSF EP VL A++PN+LVNG Sbjct: 122 VDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L II GPDFPTG +ILGR GI+ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIRL 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG IE DRE I+++EIPYQVNKA M+E+IA+LVREK+I I+DL Sbjct: 242 AYHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVVIEL+R A DV+LNQLYR+T LQ+ F NMVAL+ +P+ L +L Sbjct: 302 RDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTKYLLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 LFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL SR+R+ I+K EL++VK E TPR+T I+E ++EDED I REDMV Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPI P RGKALINIL L QGERITTIMP PEDE SW L V+FAT GNVRR Sbjct: 602 KEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------- 711 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLTT GQC+RFP+S Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKEF 721 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +RVF GR+S+GVRGI+LA D+VIS++I+ H DA +ER Y++ +A RR G EE Sbjct: 722 GVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRR---GGVEE 778 Query: 772 ITSLKNDSS-VEG--------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 +++++++ VEG + E+R E+ EQF+LT+SE G+GKRTSS+++R +NR Sbjct: 779 RAAVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNR 838 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 GKGI A V+ N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++ Sbjct: 839 GGKGIVAMSVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIV 896 Query: 883 FSTAKDERVVSVERIRESE 901 F TA DE+VVSVE I E+E Sbjct: 897 FDTADDEKVVSVEHIPEAE 915 >gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] Length = 930 Score = 1110 bits (2871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/886 (62%), Positives = 685/886 (77%), Gaps = 10/886 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 17 IRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDAL RMAQD+S+RL LI GQGNFGS+DGD AA RYTECRL Sbjct: 77 RVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGSIDGDRAAAMRYTECRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH L D+ KDTV+F NYDGS QEP VL ARYPN+LVNG GGIAVGMATNIP HN+ Sbjct: 137 EKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGAGGIAVGMATNIPPHNM 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+I+ P+I L LMEII GPDFPTG +ILGR GIK AY GRGS+++R Sbjct: 197 GEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKAAYENGRGSVIMRSKVD 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ R I+V+EIPYQVNK+AM+EKIAELVREKRI I+D+RDESDRQG RVVIELK Sbjct: 257 TEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDIRDESDRQGMRVVIELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A DVI+NQLYRY+ LQ F NMVALNG +PE+ L +LKAF+AFREEVV RRT++ Sbjct: 317 KDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLKAFIAFREEVVGRRTRF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLA+A AN+D+V+ +IR +P+P TARR+LM+R+W A DI+ LI LID Sbjct: 377 LLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLMERNWPAKDIEPLIQLID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D Y I DGT LSE Q RAIL+LRL RLT LGRD+I +EL+ L EIK+ LDIL SR Sbjct: 437 DPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDKLAAEIKDYLDILKSRE 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L I++ EL V+DE TPRRT I +G D++DED I REDMVVTVSH GY+KRVPL Sbjct: 497 RILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQREDMVVTVSHSGYIKRVPLDT 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ +DEDFVT LF+ +THT VLFFSS G YK KVWRLP+ PQARG Sbjct: 557 YRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAYKMKVWRLPLAGPQARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 AL+N+L L QGERIT+I+P PE+E +W L V+FATK G +RRNKLSDF QIN++GKIA Sbjct: 617 NALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRRNKLSDFAQINKNGKIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D I++V T T+++D+LLTT G C+RFP + +RVF+GRNSVGVRGI+LA+GD V Sbjct: 677 MKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGRNSVGVRGINLAEGDHV 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM I+ H D D DER Y+K R +SG+ ++ S + +++ER + + Sbjct: 737 ISMTILRHFDCDSDERTAYLK----LSRAMSGE----EGAESVSFEDAGMTKERFEAMDE 788 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + ILTVSE G+GKRTSSY++R + R GKGI A V+ N G LVA F ++D+I+L Sbjct: 789 NAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRN--GRLVASFRSEESDEIML 846 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V++ G LIR PV+ IR+A R+T+GV++F+T+ DE+VV+VERI E++ Sbjct: 847 VTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERISEAD 892 >gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506] gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506] Length = 918 Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 546/890 (61%), Positives = 678/890 (76%), Gaps = 11/890 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDE+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + + Y K A Sbjct: 17 IRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMRENNYVPERPYNKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R++G+ MGKYHPHGN AIYDAL R+AQD+S+RL LI+GQGNFGS+DGDPPAAERYTE RL Sbjct: 77 RVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGSIDGDPPAAERYTEVRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LLDDL KDTVDF+ NYDG QEP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 AKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD CVA+ID PD+D++ L++ I GPDFPTGA+ILGR+GI+ AY TGRGSIV+R + Sbjct: 197 GEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALILGRSGIRQAYLTGRGSIVMRSRAT 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DR+ I+VTEIPYQVNKA M+E+IAELVR+KR+ IA++RDES R+G RVV E+K Sbjct: 257 IEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAEIRDESSREGLRVVFEIK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LN LYR ++LQ+ F NMVALNG KP TL +L AFVAFREEVV RRTK+ Sbjct: 317 RDAQADVVLNNLYRMSALQTSFGANMVALNGGKPALMTLHDLLTAFVAFREEVVSRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLAIAVAN+DEV+ IR SP+P TAR LM R W A D+ LI LID Sbjct: 377 LLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREALMTRDWPAMDVAPLIALID 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LS Q RAIL+LRL RLT LGRD++ +EL+ + +EI++ LDIL+SR Sbjct: 437 DPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADELDKIAVEIRDYLDILASRE 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I+K ELL+VK E TPR+T I + D EDED I REDMVVTVSH GY+KRVPLS Sbjct: 497 RIRTIVKDELLAVKAEFGTPRKTEITDAEGDFEDEDLIAREDMVVTVSHAGYIKRVPLST 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKGRS + RDEDFVT +F+ STH VLFFSS G VYK KVWRLP+ +PQARG Sbjct: 557 YRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVYKLKVWRLPLSAPQARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+NIL L +GERIT+IM P DE +W+ L ++F+T G VRRN+LSDF +NR+GKIA Sbjct: 617 KALVNILPLTEGERITSIMALP-DEETWSRLQIMFSTTGGTVRRNELSDFTNVNRNGKIA 675 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ + I V+ CT+++D+LLT+ GQC+RFP+ +RVF GR+S+GVRGI L +GD++ Sbjct: 676 MKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRL 735 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG--------DTEEITSLKNDSSVEGNISE 787 ISMAI+ H DA +ER Y+K +A RR +G +T + + +I + Sbjct: 736 ISMAIIRHVDATAEERAAYIKLANAVRRSQAGLENGAEEPETVADADAEEAVAAPADIDQ 795 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 R E+ EQFILT+SE GFGKRTSS+++R + R GKGI A V++ N G L+A FPV Sbjct: 796 ARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMAVNERN--GPLIASFPV 853 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + DQI+LV+D G LIR PVN IRI R ++GV++F+TA+DE+VVSVER+ Sbjct: 854 EEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKVVSVERV 903 >gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] Length = 917 Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 565/917 (61%), Positives = 692/917 (75%), Gaps = 21/917 (2%) Query: 8 SDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 SD+++EK I +SI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFG Sbjct: 2 SDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFG 61 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G EWNK Y K AR G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGS Sbjct: 62 MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGS 121 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD PAA RYTE RL K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG Sbjct: 122 VDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGA 181 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GGIAVGMATNIP HNLGEV+D C+A+I++P + +D L+ II GPDFPTG +ILGR GI+ Sbjct: 182 GGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIRL 241 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSIV+RG IE DRE I+V+EIPYQVNKA M+E+IAELVREK+I I+DL Sbjct: 242 AYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDL 301 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G+RVVIEL+R A DV+LNQLYR+T LQ+ F NMVAL+ +P L +L Sbjct: 302 RDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLLT 361 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 FVAFRE+VV RRTKYLL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM Sbjct: 362 LFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMS 421 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R W A+D+ +I LIDD + + DGT LS Q +AIL+LRL RLT LGR++I EL+ Sbjct: 422 RDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDK 481 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L +EI + LDIL SR+R+ I+K EL++VK E TPR+T I+E ++EDED I REDMV Sbjct: 482 LALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDMV 541 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GYVKRVPLS YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VY Sbjct: 542 VTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVY 601 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 KEKVWRLPI P RGKALINIL L QGERITTIMP PEDE SW L V+FAT GNVRR Sbjct: 602 KEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVRR 661 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 NKLSDF+ + RSG IAMKLD + I+ V+ CT+ +D+LLT GQC+RFP+ +RVF GR Sbjct: 662 NKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTGR 721 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTE-----EIT 773 S+GVRGI+LA GD+VIS+ I+ H +A ER Y+K A RR G DT+ E+T Sbjct: 722 TSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEVT 781 Query: 774 SLKNDSSVEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + EG +S +R E+ EQF+LT+SE G+GKRTSS+++R + R GKGI A Sbjct: 782 AEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAMS 841 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 V+ N G LVA FPV D+DQI+LV+D G LIR PV IR+A R+T+GV++F TA DE+V Sbjct: 842 VNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEKV 899 Query: 892 VSVERIRESEIVDEAES 908 VSVE I E+E EAE+ Sbjct: 900 VSVEHIPEAE---EAEN 913 >gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] Length = 917 Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/884 (61%), Positives = 676/884 (76%), Gaps = 6/884 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSITDE+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G EWNK+Y K A Sbjct: 17 IRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHGN ++YDAL RM Q +S+R+ LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 77 RVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K LLD+LG+DTVDF+ NYD S EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 EKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG VA++D+P +D + L++ I GPDFPTGA+I+GR+GI+ AY TGRGSI++R + Sbjct: 197 GEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIMGRSGIRQAYMTGRGSIMMRARAT 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +RE I++TEIPYQVNKA M+EKIAELVR+KR+ IA++RDESDR+G RVVIE+K Sbjct: 257 IETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEIRDESDREGMRVVIEVK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LN LYR T LQ+ F VNMVAL+G +P TL L AF+AFREEVV RRTK+ Sbjct: 317 RDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPAVMTLHDTLTAFIAFREEVVSRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLAIAVAN+DE++++IR +P+P TAR LM+R W A D+ L+ LI Sbjct: 377 LLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLMERHWPAKDVASLVALIA 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + SDGT LS Q RAIL+LRL RLT LGRD+I +EL+ L +EI E L+IL+SR Sbjct: 437 DPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDKLALEIAEYLEILASRP 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ II++ELL+++ E +TPRRT I EG D++DED I REDMVVTVSH GYVKRVPLS Sbjct: 497 RMRAIIREELLALRAEFNTPRRTEITEGFGDLDDEDLIAREDMVVTVSHAGYVKRVPLST 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRS + RDEDFVT LF+ STH VLFFSS G VYK KVWRLP +PQARG Sbjct: 557 YRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVWRLPAAAPQARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALINIL L ERIT+I+P PE+ + ++FAT G VRRN L+DF Q+NR+GKIA Sbjct: 617 KALINILPLQPDERITSIVPLPENLEEHSLWQIMFATTGGTVRRNALADFSQVNRNGKIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ ++I SV+ C + D+LLTT G C+RFP+ +R+F GR+SVGVRGI L +GD++ Sbjct: 677 MKLEEGEQIASVQLCNEHQDVLLTTANGACIRFPVPEVRLFKGRDSVGVRGIRLEEGDRL 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISMAI+ H DA +ER+ Y++ AQ + + I + EG + + E++ Sbjct: 737 ISMAIINHTDAAAEERVQYLRQSRAQ----AAEDAPIELEGEAPAAEGKLDPVKFLEMET 792 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 EQFILT+SE G+GKRTSSY++R++ R GKGI A V++ N G LVA FPV D DQI+L Sbjct: 793 NEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--GKLVASFPVRDADQIML 850 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+D G LIR PVN IRI R+++GV++F TA DERVVSVE I E Sbjct: 851 VTDGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSVEHISE 894 >gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 884 Score = 1107 bits (2864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/884 (63%), Positives = 675/884 (76%), Gaps = 7/884 (0%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +KKYVK AR+ G+V+GK Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL KAA LL Sbjct: 61 YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD + EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D CVA Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY GRGSIV+RG IE +RE Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKERE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +++TEIPYQVNKA M+E+IAELV+EK+I I DLRDESDR GYRVVIELKR A ADV+L Sbjct: 241 ALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F VNMVAL+ +P L +L FV FRE VV RRTK+LL KARDRA Sbjct: 301 NQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDRA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D++D++ LIDD + I D Sbjct: 361 HILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISPD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT+ LS Q RAIL+LRL RLT LGRD+IR+EL+ L EI + LDIL SR R+LGIIK E Sbjct: 421 GTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L VK E TPRRT I+E ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK Sbjct: 481 LAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GR+G+ RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARGKALINIL L Sbjct: 541 GRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPL 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QGERITTIMP PEDES+W NL V+FAT GNVRRNKLSDF+ + RSG IAMKLD + I Sbjct: 601 EQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAI 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + V+ CT+ +D+LLT GQC+RFP++ +RVF GR S+GVRGI+L +GD+VIS+AI+ H Sbjct: 661 VDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHV 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + DER Y+K A + + + ++S +++ER E+ EQ +LTVS Sbjct: 721 ETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVS 780 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+GKRTSSY++R + R GKGI A V+ N G LVA FPV D DQI+LV+DKG LIR Sbjct: 781 VNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIMLVTDKGQLIR 838 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 PV IRIA R+T+GV++F TA+DE VVSVE I E EAES Sbjct: 839 CPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE-----EAES 877 >gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] Length = 914 Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 545/902 (60%), Positives = 684/902 (75%), Gaps = 8/902 (0%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I VSIT+E+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G EWNK Sbjct: 12 EPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKS 71 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ ++YDAL RMAQ +++RL L++GQGNFGSVDGD PAA RY Sbjct: 72 YRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGSVDGDAPAAMRY 131 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K + LLDDL KDTVDF+ NYD S EP VL A++PN+LVNG GGIAVGMATNI Sbjct: 132 TEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNI 191 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VD VA++D+P ++ +AL++++ GPDFPTGA+ILGRTGI+ AY TGRGSI++ Sbjct: 192 PPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALILGRTGIRQAYLTGRGSILM 251 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R IE +RE ++VTEIPYQVNKA M+EK+AELVR+KRI IA++RDESDR G RV Sbjct: 252 RAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEIRDESDRDGMRV 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G KP TL +L AF+AFREEV+ Sbjct: 312 VIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPGVLTLHDVLTAFIAFREEVIS 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P +AR LM R W A D+ L Sbjct: 372 RRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMARDWPAKDMAPL 431 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I LI D + +G D T LS Q RAIL+LRL RLT LGRD+I EL+ L +EI + LDI Sbjct: 432 IALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDKLAVEIADYLDI 491 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+SR R+ I++ EL+++K+E TPRRT IVEG D+EDED I RE+MVVTVSH GY+KR Sbjct: 492 LASRPRMRAIVRAELIAIKEEFGTPRRTEIVEGFGDLEDEDLIQREEMVVTVSHAGYIKR 551 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPLS YRAQRRGGKGRS + RDEDFVT LF+ STH VLFFSS G VYK KVWRLP+ + Sbjct: 552 VPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVWRLPLAA 611 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 PQARGKALINIL L Q ERIT+++ PED L ++FAT G VRRN L+DF Q+NR Sbjct: 612 PQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRRNALTDFQQVNR 671 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIAMKL+ + I V CT+++D+LLTT G C+RFP++ +RVF GR+SVGVRGI L Sbjct: 672 NGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFPVTDVRVFKGRDSVGVRGIRLE 731 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--ISEE 788 GD +ISMAI+ H DA +ER+ Y+K +RR ++G+ E ++ + GN + ++ Sbjct: 732 DGDTIISMAIIGHVDASAEERLAYIK----RRRALAGEATEAGDVEAEEGASGNGHLGQD 787 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R E+ KEQFILTVSE G+GKRTSSY++R++ R GKGI A V++ N G LVA FPV Sbjct: 788 RYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--GRLVASFPVE 845 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D DQI+LV+D G LIR PV+ IRI RA++GV++F TA+ ERVVSVE I + + ++ Sbjct: 846 DQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISDDAGAENSDG 905 Query: 909 TE 910 E Sbjct: 906 EE 907 >gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] Length = 927 Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/895 (62%), Positives = 681/895 (76%), Gaps = 13/895 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G EWNK Y K A Sbjct: 18 IRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD AA RYTE RL Sbjct: 78 RTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDSAAAMRYTESRL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 138 TKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG Sbjct: 198 GEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIILGRAGIRLAYHTGRGSIVMRGKVA 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE T DRE I+++EIPYQVNKA M+E+IAELVREK+I I+DLRDESDR G+RVVIEL+ Sbjct: 258 IEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIELR 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+LNQLYR+T LQ+ F NMVAL+ +P+ L +L+ FVAFRE+VV RRTK+ Sbjct: 318 RDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLRLFVAFREQVVTRRTKF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAHVLVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D+ +I LID Sbjct: 378 LLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARDWEAKDVAAMITLID 437 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + +DGT LS Q +AIL+LRLARLT LGR++I EL+ L IEI + L+IL SR+ Sbjct: 438 DPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLAIEIADYLEILRSRA 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ IIK+EL +VK E TPR+T I+E ++EDED I REDMVVTVSH GYVKRVPLS Sbjct: 498 RVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLPI P RG Sbjct: 558 YRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPIAPPNGRG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALINIL L QGERITTIMP PEDESSW L V+FAT G VRRNKLSDF+ + RSG IA Sbjct: 618 KALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNKLSDFVDVRRSGIIA 677 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD + I+ V+ CT +D+LLT GQC+RF ++ +RVF R S+GVRG++LA GDQV Sbjct: 678 MKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRASMGVRGMALANGDQV 737 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDT------EEITSLKNDSSVE-----GN 784 IS+ I+ H DA+ ER Y+K A RR +G+ E+ + D+ E + Sbjct: 738 ISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAEVADAEPEEVDAIAS 797 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +S +R E+ EQF+LT+SE GFGKRTSS+++R + R GKGI A V+ N G LVA Sbjct: 798 LSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAMAVNARN--GKLVAS 855 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 FPV + DQI+LV+DKG LIR PV IRI R+T+GV +F+TA+DE VVSVERI E Sbjct: 856 FPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSVERIGE 910 >gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] Length = 912 Score = 1103 bits (2854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/901 (61%), Positives = 684/901 (75%), Gaps = 6/901 (0%) Query: 1 MTEHIISSDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 M E D+ E+ G I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL+L++GQGNFG Sbjct: 61 SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVD DPPAA RYTE RL K A LL+D+ + TVDF+PNYDG EP VL AR+PN+LVNG Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D +A+ID PD+ + LMEI+ GPDFPT A ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATILGRGGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 NAYATGRGSI++R + IE +RE I+ TEIPYQVNKAA++E+IAELV+EKR+ IAD Sbjct: 241 NAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F+VNM+ALNG +PE TL +L Sbjct: 301 LRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALNGGRPELMTLHDVL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 +AFV FRE VV RRTK+ L KARD AH+ VGLAIAVAN+DEV+R+IR SP+ AR LM Sbjct: 361 RAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 R W A D+ L++LI D + + DGT+ LSE Q RAIL+LRL RLT LGR++I LN Sbjct: 421 ARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L EI E L+IL SR +L GIIK E+L+VK+ TPRRT+I + D+EDED I REDM Sbjct: 481 KLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATPRRTQITDAEGDVEDEDLIAREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ M++EDFV LF+ +THT VLFFSS G Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKA 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ +PQARGKAL+N+L L GERITTIMP PEDESSW L V+FAT G VR Sbjct: 601 YKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF+ + R+G IAMKLD + I+ V T T+ +DILLTT GQC+RF + +RVF G Sbjct: 661 RNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQG 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT--EEITSLK 776 R S+GVRG+SL +GD+VIS++I+ H +A +ER Y+K +A RR + D + + Sbjct: 721 RTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAE 780 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++ +++ER +++ EQ ILTVSE G+GKRTSSY++R + R GKGI A V+ N Sbjct: 781 EAATGAVELTDERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARN 840 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV D+I+LV++ G LIR PV+ IRIA R+T+GV++F+TA+DERVVSVE Sbjct: 841 --GKLVASFPVGQGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSVEH 898 Query: 897 I 897 I Sbjct: 899 I 899 >gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 915 Score = 1100 bits (2846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 549/912 (60%), Positives = 691/912 (75%), Gaps = 15/912 (1%) Query: 7 SSDEEEEKG-----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 +SD+E G I VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 4 NSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILFAMN 63 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 ++G++WNKKYVK ARI GEVMGKYHPHGN AIYDAL R+AQD+S+R+ L++GQGNFGS+D Sbjct: 64 ELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFGSID 123 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 GDPPAAERYTE RL K A FLLDDL DTVD+R NYDG+ QEP VL A++PN+LVNG GG Sbjct: 124 GDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNGAGG 183 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMATNIP HNLGEV+D C+A +DNP+I +D L +II+GPDFPT +ILGR GI +AY Sbjct: 184 IAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGGILSAY 243 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRGSI++R +E DRE +VV+EIPYQVNK ++EKIA+LVR+K+I I+DL D Sbjct: 244 HKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISDLWD 303 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ES+R+G R+VIELKR A ADV+LN LY+Y+ LQ+ F NM+A+NG +PE TL + AF Sbjct: 304 ESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKDFISAF 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +FR++VV RR K+LLNKARDRAHVLVGLAIAVAN+DEV+++IRFS +P A+ +LM R Sbjct: 364 TSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLMARD 423 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 W A D+ LI+LI D + + + GT LSE Q +AILELRLARLT LGRD+I +ELN + Sbjct: 424 WPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELNKIA 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI+E L IL+SR+R++ I+K EL ++KDE TPR+T IV+ ++EDED I RED VVT Sbjct: 484 NEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQREDCVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VSH GY+KRVPL+ YRAQRRGGKGRSG+ RDEDFVT LF+ STHT VLFFSS G Y+ Sbjct: 544 VSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMCYRM 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KVWRLP SPQ+ GKAL+N+L L Q E IT+I+P PED S+W+ L ++FAT+ GNVRRN Sbjct: 604 KVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVRRNA 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRN 720 L+DF INR+GKIAMKLD D I+ V + D+LLT+ GQCVRF IS IR+F GR+ Sbjct: 664 LADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFKGRD 723 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GVRGI L GD+VISMAI+ H +A +ER Y+K SA RR S +TE+ + + Sbjct: 724 STGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRR--SEETEDAEPVAEADA 781 Query: 781 VEGN-----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 E + +S ER ++ EQF+LTVS KGFGKR+SS++FR S R GKGI A V+ Sbjct: 782 EEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVNDR 841 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G L+A FP+++ DQI+LV+D G LIR PV+ +RIA R T+GV IF T +E+VVSVE Sbjct: 842 N--GRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSVE 899 Query: 896 RIRESEIVDEAE 907 RI E E + +E Sbjct: 900 RITEDETDEGSE 911 >gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] Length = 918 Score = 1095 bits (2832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/891 (61%), Positives = 671/891 (75%), Gaps = 9/891 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM + G EWNK Y K A Sbjct: 20 IRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL Sbjct: 80 RTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESRL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GGIAVGMATNIP HNL Sbjct: 140 TKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D CVA+I++P + +D L +II GPDFPTG +ILGR GI+ AY TGRGSIV+RG Sbjct: 200 GEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIILGRAGIRLAYHTGRGSIVMRGKVS 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE DRE I+++EIPYQVNKA M+E+IAELVREK+I I+DLRDESDR G+RVVIEL+ Sbjct: 260 IEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIELR 319 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQLYR+T LQ+ F NMVAL+ +P L +L FVAFRE+VV RRTK+ Sbjct: 320 RDAVADVVLNQLYRFTPLQTNFGANMVALDAGRPLLMNLKDLLTLFVAFREQVVTRRTKF 379 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR LM R W A D+ +I LID Sbjct: 380 LLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRDWPAQDVAAMITLID 439 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + DGT LS Q +AIL+LRL RLT LGR++I EL+ L +EI + L+IL SR+ Sbjct: 440 DPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRA 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ IIK EL +VK E TPRRT I+E ++EDED I REDMVVTVSH GYVKRVPLS Sbjct: 500 RVQTIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLST 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGR+G+ R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ P RG Sbjct: 560 YRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRG 619 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALINIL L QGERI TIMP PEDESSW V+FAT G VRRNKLSDF+ + RSG IA Sbjct: 620 KALINILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNKLSDFVDVRRSGIIA 679 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD + I+ V+ CT +D+LLT GQC+RF ++ +RVF R S+GVRG++LA GDQV Sbjct: 680 MKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRASMGVRGMALANGDQV 739 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-------GNISEE 788 IS+ I+ H DA ER Y+K A RR +G+ E + + + +S E Sbjct: 740 ISLTILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVEAAVEPEEETDGLAALSPE 799 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R E+ EQF+LT+SE GFGKRTSS+++R + R GKGI A V+ N G LVA FPV Sbjct: 800 RYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNARN--GKLVASFPVE 857 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + DQI+LV+DKG LIR PV IRI R+T+GV +F+TA+DE VVSVE I E Sbjct: 858 EEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSVEHIGE 908 >gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2] gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2] Length = 927 Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/896 (60%), Positives = 677/896 (75%), Gaps = 16/896 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + ++ YVKCA Sbjct: 16 IRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHEQNHTPDRPYVKCA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQ +S+RL LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 76 RIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL+D+ DTVDF+ NYDG +EPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 136 ARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +A+IDNP++ ++ LM + GPDFPTG ILGRTGI++AY TGRGS++ R Sbjct: 196 GEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAILGRTGIQSAYLTGRGSVLTRAKVE 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E +RE ++VTEIPYQ+NK++++EKIA+LVREKR+ I+DLRDESDR G R+VIELK Sbjct: 256 VETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLRDESDRDGMRIVIELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+LNQL+RYT+LQS F+ NM+ALNG +PE TL L AFV FREEVV RRTKY Sbjct: 316 RDAVAEVVLNQLWRYTALQSSFACNMIALNGGRPEMLTLKDFLTAFVDFREEVVTRRTKY 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARD AH+ VGLAIAVAN+DEV+R+IR S + AR LM RSW A D+ L+ LI Sbjct: 376 LLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMARSWPAHDMAPLVLLIA 435 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + +G LSE Q RAILELRL RLT LGR++I LN L +EI + L+IL SR Sbjct: 436 DPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKLAVEIADYLEILHSRE 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL I+K+E+L+VK TPRRT I++ ++DED I REDMVVTVSH GYVKRVPL+ Sbjct: 496 RLFSIVKEEMLAVKAAHATPRRTIILDSATGVDDEDLIQREDMVVTVSHHGYVKRVPLAT 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRS + RDEDFV LF+ STH VLFFSS G VYKEKVWRLP+ +PQARG Sbjct: 556 YRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYKEKVWRLPLAAPQARG 615 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N+L L QGERITTIMP PE+E +W L V+FAT G VRRNKLSDF Q+NR+GKIA Sbjct: 616 KALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRNKLSDFAQVNRAGKIA 675 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 M++D +EI+ V+ C ++ D+LLTT GQC+RFP++ +RVF GR+S+GVRGISL++GD+V Sbjct: 676 MRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTDVRVFKGRDSMGVRGISLSEGDRV 735 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG----------NI 785 IS+AI+ H +AD ERI Y+K RR ++G+ ++ + +G ++ Sbjct: 736 ISLAILRHTEADSGERIAYLK----MRRAVAGEASAEAGAESPADAQGEDGAEDAGPQSL 791 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S +R + EQ ILT+S G+GKRTSSY++RI+ R GKGI A V+ N G LVA Sbjct: 792 SPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRN--GLLVASM 849 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 PV D D+I+LV++ G LIR PV IR+A R T+GV++F+T DE+VVSVERI E + Sbjct: 850 PVEDGDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTGADEQVVSVERITEED 905 Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEND-ILL 698 S + ++ + +G +R ++ R GK +AM ++ R+ +L ++ D I+L Sbjct: 800 SADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDEIML 859 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 T GQ +R P+ IRV AGR + GV + +QV+S+ + DA Sbjct: 860 VTNGGQLIRCPVEGIRV-AGRGTQGVIVFNTGADEQVVSVERITEEDA 906 >gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] Length = 911 Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/914 (60%), Positives = 680/914 (74%), Gaps = 13/914 (1%) Query: 6 ISSDEEEEKG-------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 ++ D+ E+ G I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI+F Sbjct: 1 MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL LI+GQGNFG Sbjct: 61 SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 SVD DPPAA RYTE RL K A LL+DL + TVDF+PNYD EP VL AR+PN+LVNG Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GGIAVGMATNIP HNLGEV+D +A+ID PD+ + LMEI+ GPDFPT A ILGR GI+ Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATILGRGGIR 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 NAY+TGRGSI++R + IE +RE I+ TEIPYQVNKAA++E+IAELVREK+I +AD Sbjct: 241 NAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F VNM+ALNG +PE TL +L Sbjct: 301 LRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGRPELLTLKDVL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 AFV FRE VV RRTK+ LNKARD AH+ VGLAIAVAN+DEV+R+IR S + AR LM Sbjct: 361 VAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALM 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +R W A D+ L+ LI D + + DGT+ LSE Q RAIL+LRL RLT LGR++I LN Sbjct: 421 ERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L EI E L+IL SR +L GI+K E+++VK TPRRT+IV+G D+EDED I REDM Sbjct: 481 KLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIAREDM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ ++EDFV LF+ STHT VLFFSSLG Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRA 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 YKEKVWRLP+ +PQARGKAL+N+L L Q ERITTIMP PEDESSW L +FAT G VR Sbjct: 601 YKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVR 660 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RNKLSDF + RSG IAMKLD + I+ V T ++ +D+LLTT+ GQC+RFP++ +RVF Sbjct: 661 RNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQS 720 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R+S+GVRG++LA D+VIS++I+ H +A +ER Y+K +AQRR + + Sbjct: 721 RSSMGVRGVALAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEA 780 Query: 779 SSVEGNI--SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +I SE R ++++ EQ ILTVSE G+GKR+SS+++RI+ R GKGI A V+ N Sbjct: 781 EESSASIELSEARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARN 840 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G LVA FPV +I+LV+D G LIR PV IRI R T+GV++F TA+ ERVVSVE Sbjct: 841 --GKLVASFPVGSGAEIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVFDTAEGERVVSVEH 898 Query: 897 IRESEIVDEAESTE 910 I E+ EAE E Sbjct: 899 IGETGA--EAEVAE 910 >gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 929 Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/884 (61%), Positives = 669/884 (75%), Gaps = 4/884 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VS++DEMQ+SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + ++ YVK A Sbjct: 16 IKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHENNHTPDRPYVKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ AIYDAL RMAQ +S+RL LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 76 RIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL D+ DTVDF+PNYDG EPVVL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 136 ARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +A+IDNP++ ++ L I+ GPDFPTG ILGR GI++AYATGRGS+++R Sbjct: 196 GEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSILGRAGIRSAYATGRGSVLMRAKIE 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ RE ++VTEIPYQVNKA ++EKIAELVREKRI I+DLRDESDRQG R+VIE+K Sbjct: 256 IEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRDESDRQGMRIVIEIK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A D++LNQL+RYT+LQS F NM+ALNG +PE TL L AF+ FREEVV RRTKY Sbjct: 316 RDAVPDIVLNQLWRYTALQSSFPCNMIALNGGRPETLTLRDFLTAFIDFREEVVTRRTKY 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARD AH+ VGLAIAVAN+DEV+R+IR S + AR L R W A D+ LI LI Sbjct: 376 LLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCARDWPARDMAPLIALIA 435 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +T+ +GT+ LSE Q RAILELRL RLT LGRD+I LN L EI + LDIL SR+ Sbjct: 436 DPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKLAAEIADYLDILGSRA 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL GIIK E+++VK+ TPRRT I++ ++DED I REDMVVTVSH GY+KRVPLS Sbjct: 496 RLFGIIKDEMIAVKEAHATPRRTIILDSDAGVDDEDLIQREDMVVTVSHAGYIKRVPLST 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RD+DFV LF+ STH VLFFSS G VYKEKVWRLP+ +PQA G Sbjct: 556 YRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFFSSRGQVYKEKVWRLPLSAPQALG 615 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+NIL L Q ERITTIMP PEDE W +L V+FAT G VRRNKLSDF Q+NR+GKIA Sbjct: 616 KALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRNKLSDFAQVNRAGKIA 675 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 M+LD ++I+ V+ CT+++D+LLTT GQC+RF ++ +RVF GR+S+GVRGI+L +GD+V Sbjct: 676 MRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRDSMGVRGIALGEGDRV 735 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG--NISEERCQEL 793 IS+AI+ H +AD DER Y+K A + + N G ++S ER E+ Sbjct: 736 ISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEEALGSTSLSLERYAEM 795 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQ ILT+S G+GKRTSS+++RI+ R GKGI A V+ N G LVA PV + D I Sbjct: 796 SAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARN--GKLVASMPVEEGDGI 853 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +LV++ G LIR PV IR+A R T+GV++F+TA+DE+VVSVERI Sbjct: 854 MLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAEDEQVVSVERI 897 >gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444] gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444] Length = 926 Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/900 (57%), Positives = 674/900 (74%), Gaps = 10/900 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + GI +SI E+++SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G +K Y Sbjct: 24 QDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPDKPYS 83 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG++A+YDAL RMAQ +S+ + L++GQGNFGS+D DPPAA RYTE Sbjct: 84 KSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAMRYTE 143 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K LL DL KDTVDF+ NYDG +EPVVL A++PN+LVNGGGGIAVGMATNIP Sbjct: 144 SRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMATNIPP 203 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D +A+I++P I +AL EI+ GPDFPTGA+I+G++G + A TGRGS+++R Sbjct: 204 HNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGALIMGQSGSRKALMTGRGSVIMRS 263 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ RE I+V+EIPYQVNKAAM+ KIAELVREK+I I+DLRDESDR G RVVI Sbjct: 264 KTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNGIRVVI 323 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ASADV+LNQLYR++ LQS F+VNM+ALNG +PE L +L+ F+ FREEV+VRR Sbjct: 324 ELKRDASADVVLNQLYRFSQLQSSFAVNMLALNGGRPELMNLRKVLEYFITFREEVIVRR 383 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L KARDRAHVLVGLA+AVAN+DEV+R+IR SP+P TAR+ L+ ++W D+ LID Sbjct: 384 TKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQDMGPLID 443 Query: 433 LIDDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LI D GS +GT+YLS+ Q R+IL L L RLTGLGRD+I NE L +I E L+IL Sbjct: 444 LIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIAEYLEIL 503 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SR R+LGIIK EL VK++ PRR++ V+G +DMEDED I EDMVVTV+H GYVKR Sbjct: 504 RSRPRILGIIKAELAEVKEKFAVPRRSQFVDGGVDMEDEDLIEVEDMVVTVTHGGYVKRT 563 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS YR Q RGGKGRSG+ M+DEDF+ +F +THT +LFFSS G VYKEKVWRLPIG P Sbjct: 564 PLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGMVYKEKVWRLPIGGP 623 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RGKAL+NI L ERI ++MP P+ E + +L V+FAT+ GNVRRN+L+DF ++NR+ Sbjct: 624 TSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDVMFATRSGNVRRNRLADFTRVNRA 683 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAMKLD D I+SV+ C++++D+LLTT LGQ +RF ++ +RVFAGR+S GVRGI L Sbjct: 684 GKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRFAVTDVRVFAGRDSTGVRGIRLGA 743 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ H +E Y+KH +A RR ++G+ EEI+ +++ E +S ER Sbjct: 744 EDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGEEEEISDDEDEVVAEAALSAERIA 803 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV----SKINEIGALVAVFPV 847 EL E+FI TV++ G GKR+S+YD+R++ R GKG+ A ++ K + + FPV Sbjct: 804 ELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLVAQNIWGRDKKGGPVKKVAQSFPV 863 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D+++LV+D G LIR PV++IRIA R+T GV + T ERVVS R +VD+ E Sbjct: 864 GDGDEVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLRTGDGERVVSAAR-----LVDDGE 918 >gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10] gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10] Length = 946 Score = 1050 bits (2716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/891 (58%), Positives = 664/891 (74%), Gaps = 9/891 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI +++I DEM++SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G K Y KC Sbjct: 32 GIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTMHENGQTHEKSYRKC 91 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A G+VMG+YHPHG+ A+YD+L R+AQDWS+R+ LI+GQGNFGSVDGDPPAA RYTE R Sbjct: 92 ATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSVDGDPPAAYRYTEAR 151 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 +QK A LL D+ KDTV+F NY QEPVVL ARYPN+LVNG GGIAVGMATN+P HN Sbjct: 152 MQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAGGIAVGMATNVPPHN 211 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG +A+++NP + L++ I GPDFPTG +ILGRTG +NA TGRGSIV+R + Sbjct: 212 LGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLILGRTGARNAVLTGRGSIVMRSRT 271 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ DR I+V EIPYQVNKA+M+EKIA+LVR+K+I IADLRDESDR G RVVIEL Sbjct: 272 SIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADLRDESDRNGMRVVIEL 331 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ADVILNQL+R++ +Q+ F NM++L G +P+ + ILK F+ FREEVV RR K Sbjct: 332 KRDANADVILNQLFRWSPMQTSFGANMLSLVGGRPQLLGALDILKEFLRFREEVVARRAK 391 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKARDRAHV++GLA+AVAN+DEV+ +IR +PNP TAR +LM R W A D+ L++L+ Sbjct: 392 FELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLMARDWPAMDVAPLVELV 451 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D + D T+ L+E Q RAILELRL RLTGLGR+++ NE +L +I + LD+L SR Sbjct: 452 ADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAKTLADQIADLLDLLRSR 511 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+L II+ EL V++ TPRR+ V+ LD EDED I R++MVVTV+H GY KR LS Sbjct: 512 QRVLDIIRDELTEVRENYATPRRSEFVDAELDFEDEDLIPRDEMVVTVTHGGYAKRTALS 571 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGRSG+ +DEDF+ LF+ STH +LFFS+ G VYK K WRLP+G+P R Sbjct: 572 DYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLLFFSNRGMVYKTKTWRLPLGAPNTR 631 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKALIN+L L QGE IT+IM PEDES+W ++ V+FAT G VRRNKLSDF+Q+NR+GKI Sbjct: 632 GKALINLLPLEQGETITSIMALPEDESTWADMNVMFATNKGTVRRNKLSDFVQVNRNGKI 691 Query: 675 AMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 AMKL+ D+I++V CT+++D+ LTT G+ +RFP + +RVFAGRNSVGVRGI LA+GD Sbjct: 692 AMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRNSVGVRGIRLAEGD 751 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI----TSLKNDSSVEGNISEER 789 ++ISMAI+ H D E YMKH +A RR + GD EEI T D E +S ER Sbjct: 752 ELISMAILHHIDVTSPEARAYMKHATAMRRAL-GDDEEIETVNTDGDEDGDDEAALSTER 810 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EL E+F+LTV+ G GKR+S+YDFR+ R G+ ATD+ + +I L A FPV D Sbjct: 811 LAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIKR--DI-PLSASFPVED 867 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 DQI+ V+D G LIR PV+ +RIASR+++GV + + E VV+V RI+++ Sbjct: 868 ADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRIQDA 918 >gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814] gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814] Length = 981 Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/911 (57%), Positives = 683/911 (74%), Gaps = 16/911 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E G++ ++I+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++K Y Sbjct: 40 EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ ++YDAL RMAQ++S+ L L++GQGNFGS+DGDP AA RYTE Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 +L+K A+ LL D+ KDTV+F+ NYDGS +EP+VL AR+PN+LVNGGGGIAVGMATNIP Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D +A+I++P+ID +AL+EI+ GPDFPTGA+I+GR G ++ TGRGS+++R Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRS 279 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE+ RE +V TEIPYQVNKA+M+EKIAELVR+KRI IAD+RDESDR G RVV+ Sbjct: 280 KSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVV 339 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR AS +V+LNQL+RYT LQ+ F +NM+ALN +PE +L IL+AF+ FREEVV RR Sbjct: 340 EVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARR 399 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ LNKAR RAH+LVGLA+AVAN+DEV++IIR SP+P TAR +LM R+W A D+ LI+ Sbjct: 400 TKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLIN 459 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LI D G + LSE Q RAIL+LRL RLTGLGRD+I +E L I + LDILS Sbjct: 460 LIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILS 519 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR R++ II +EL V++E PRR++ +E LDM+DE I +EDMVV +H GY KR Sbjct: 520 SRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGGYAKRTA 579 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS+YR Q RGG+GRSG+ ++ED VT F+ +THT VLFFSS G VYK KVWR+P+G+PQ Sbjct: 580 LSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ 639 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RGKAL+N+L L++GE IT++MP PEDE N+ ++FAT+ G VRRNKLSDF Q+NR+G Sbjct: 640 SRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNG 699 Query: 673 KIAMKLD------SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 KIAMKLD S D I+ V+ C+ ++D++LTT LGQC+RF + +RVF GR S GVRG Sbjct: 700 KIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRG 759 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS---GDTEEITSLKNDSSVEG 783 I LA GD+VISM ++ H D E Y+KH SA RR + GDTE + D+ EG Sbjct: 760 IRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEG 819 Query: 784 N---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +S ER EL E+F+LT++E G GKR S+YD+R++ R GKG+ A K+N Sbjct: 820 DEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIA---HKLNAGRR 876 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L A FP+ D D+I+LV+D G LIR P +IRIA RAT+GV + T+ +ERVVSVER+ E Sbjct: 877 LAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLAEQ 936 Query: 901 EI-VDEAESTE 910 E VDE E+ E Sbjct: 937 ESDVDENETEE 947 >gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100] Length = 941 Score = 1045 bits (2703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/902 (57%), Positives = 667/902 (73%), Gaps = 23/902 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + ITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G WNK Y K A Sbjct: 17 IRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSENGYSWNKPYRKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ ++YDAL RM QD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL Sbjct: 77 RIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK + LL+DL DTVDF+ NYD S +EP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 QKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C+A ++NP + ++ LME I GPDFPTG VI+GR GI+ AY GRGS+V+RG H Sbjct: 197 GEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIMGRAGIRAAYLKGRGSVVVRGKVH 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E DR+ ++VTEIPYQVNKA + E+IAELVREKR+ I+D+RDESDR GYRVVIELK Sbjct: 257 VETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDVRDESDRSGYRVVIELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+LNQLYR+TSLQS+F+ NMVALN +PE+ TL+ ++AF FRE V+ RRTK+ Sbjct: 317 RDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLDFIQAFTQFRETVITRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KARDRAHVLVGLA AVAN+DEV+++IR +P+P +AR LM R W A DI L+ LI+ Sbjct: 377 LLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMSRDWPADDIAPLLLLIE 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D I LS Q +AILELRL RLT LGRD+I +EL +L +I++ L+ILSSR+ Sbjct: 437 DPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKALADKIRDYLNILSSRA 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I++ EL ++K+E TPRRT I++ +++DED I +EDMVVTVSH GY+KRVPLS Sbjct: 497 RVISIVRDELTAIKEEFATPRRTEILDVEGEVDDEDLIQKEDMVVTVSHRGYIKRVPLST 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGGKGRSG+ RDEDFVT LF+ +THT VLF SS G YK KVWRLP+ +PQARG Sbjct: 557 YRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAYKMKVWRLPLSAPQARG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KALIN+L L Q E IT+I+P PE E + ++++FAT+ GNVRRN+L+DF ++ ++GKIA Sbjct: 617 KALINLLPLQQDETITSILPLPE-ERDESGVFILFATRSGNVRRNELADFAEVRQNGKIA 675 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D+I + C + +DILLTT GQ +RFP++ +R+F GR S GVRG+ L + D V Sbjct: 676 MKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPVTDVRIFKGRESTGVRGVRLDEDDTV 735 Query: 736 ISMAIVLHADADYDERICYMKHMS-------AQRRLISGD---------TEEITSLKNDS 779 IS+AI+ H +A ER Y+K + +R GD E + +L + Sbjct: 736 ISLAILRHMNATPAERAAYLKQANAMRRAAAGERAATEGDIVEQEAAAAAEAVEALDDGE 795 Query: 780 SVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++E +++ R E+ EQ++LT+SE+GFGKRTSSY++R S R GKGI A V++ Sbjct: 796 AIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNER 855 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G L+A FPV D DQI+LV++ G LIR P+ I I R+ +GV IF T +DERVVS E Sbjct: 856 N--GRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQGVTIFRTDQDERVVSAE 913 Query: 896 RI 897 I Sbjct: 914 LI 915 >gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Magnetospirillum magnetotacticum MS-1] Length = 898 Score = 1043 bits (2698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 509/883 (57%), Positives = 664/883 (75%), Gaps = 30/883 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G +NK + K A Sbjct: 12 ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K+AH LL+D+ K+TVDF+ NYD S EP+VL ARYPN+LVNG GGIAVGMATNIP HNL Sbjct: 132 AKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A ID+P++ ++ LME++ GPDFPTG ILGR GI+ A TGRGS+V+RG H Sbjct: 192 GEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRVH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DRE I+VTEIPYQVNKA MLE+IAELVR+K+I I+DLRDESDR G RVVIE+K Sbjct: 252 IEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIEIK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+L QLYR+T LQ+ F VN +ALNG +PE TL I+ AF+AFREEV+ RRT + Sbjct: 312 RDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTIF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P AR LM R+W D++ LI LID Sbjct: 372 ELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLIQLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + I DG LSE+Q +AIL+LRL RLTGL RD I +EL +G +I+ L ILSSR Sbjct: 432 EPGRAI-EDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSRP 490 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL +++ EL+ ++++ TPRRT I E + + ED I REDMVVTV++ GY+KRVPLS Sbjct: 491 RLFEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLSA 550 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ ++DEDF++ +F+V+THT VLFFSS G YK KV+RLP+G+PQARG Sbjct: 551 YRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQARG 610 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L++GE I+TIMP PEDE+SW +L+V+F T G+VRRN LSDF ++ +GKIA Sbjct: 611 KAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIA 670 Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL + ++SV+TC E +D+LL T LG+ +RFP+ +R F R+S GVRGI L D+ Sbjct: 671 MKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDSTGVRGIRLDGEDE 730 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VISM+I+ H D D + R ++K G++ E+ +++ Sbjct: 731 VISMSILRHTDYDSETRDAFLK--------------------------GDLPAEQMEKMG 764 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++QF+LTV+E GFGKRTS++++RI+ R G GI D++ + G +VA FPVN D I+ Sbjct: 765 AEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGTVVASFPVNHEDDIM 822 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVSD G LIR+PV++IRIA R T+GV + TA++ERVVS R+ Sbjct: 823 LVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARL 865 >gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] Length = 932 Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/913 (56%), Positives = 668/913 (73%), Gaps = 8/913 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + ++ G+ ++I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M Sbjct: 1 MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++ YVK AR+ G+VMGKYHPHG+ AIYD + RMAQ +S+ LLLI+GQGNFGSV Sbjct: 61 NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE R+ +AA +L DL KDTVDF+ NYDGS QEPVVL +R PN+LVNG G Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEVVD C+A IDNP+I LD L++I+ GPDFPTG I+GR+G + A Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEIIGRSGARQA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRGS+++RG + IE+ +RE IV+T IPYQVNKAA++E+IAELVREKRI +ADLR Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV+E+KR ASA+VILNQLYRYT LQS F VNM+ALN +PE+ L ++ A Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGRPEQMGLREMVTA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEVVVRRTK+ L+KARDR HVLVGLAIAVAN+DE + IIR S +P AR L+ + Sbjct: 361 FVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W A D+ L++LI D + + L++ Q RAIL L L+RLTGLGRD+I E L Sbjct: 421 DWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAREL 480 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+ L+IL+SR R++ I+++EL+ V+++ PRRT IVEG D+EDED I RE+MV+ Sbjct: 481 AGVIRGHLEILASRERVMAIVREELVQVREQFAVPRRTEIVEGDADVEDEDLIAREEMVI 540 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GYVKR PL+ YR Q RGGKGRSG+ ++ED VT +F +THT +LFFSS G YK Sbjct: 541 TVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYK 600 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP+G+P +RGKA +N+L + GE IT+I+P PEDE++W+ V+FAT+ GNVRRN Sbjct: 601 LKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRN 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGR 719 KLSDF+ I R+GKIAMKLD D I+ V C +ND+LLTT LG+C+RF +RVFAGR Sbjct: 661 KLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGR 720 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----RLISGDTEEITS 774 +S GVRGI LA+GD VISMAI+ A A ER Y+KH A R +T Sbjct: 721 DSTGVRGIRLAEGDSVISMAILRSAPATPAERAAYLKHAKAMRIATGEAEEGEETAAPEE 780 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + E + ER E+ E+ ILTVS +G+GKRTS+Y+FR + R G+G+ A D++K Sbjct: 781 EDEANGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTK 840 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G L FPV++ D+I+LVSD+G LIR+PV ++R+A R T+GV+IF + DE VVSV Sbjct: 841 RG--GKLAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSV 898 Query: 895 ERIRESEIVDEAE 907 ER+ E DE E Sbjct: 899 ERLAEPAGDDEVE 911 >gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1] Length = 894 Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/882 (57%), Positives = 670/882 (75%), Gaps = 29/882 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T V+I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++NK + K A Sbjct: 12 VTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDA+ RMAQ +S+RL LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEARM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++AHFL++D+ KDTVDF PNYD S EP+VL ARYPN+LVNG GGIAVGMATNIP HNL Sbjct: 132 ARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A+IDNPDI + +ME++ GPDFPTG ILGR+GI+ A TGRGS+V+RG H Sbjct: 192 GEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSVVMRGRCH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DRE I+VTE+PYQVNKA M+E+IAELVR+K+I ++DLRDESDR G RVVIE+K Sbjct: 252 IEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVIEIK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+L QLY++T LQ+ F VN +ALNG +P+ TL I+ AF+ FREEV+ RRT + Sbjct: 312 RDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEVITRRTIF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAHVLVGL+IAVAN+D+++++IR + +P AR +LM R W A D++ LI LID Sbjct: 372 ELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + I DGT LSEVQ +AIL+LRL RLTGL RD I +EL +G +IKE L+ILSSR Sbjct: 432 EPGRGI-VDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILSSRP 490 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LL +++ EL+ ++++ TPRRT I + + + ED I REDMVVTV++ GY+KRVPLS Sbjct: 491 KLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVTNTGYIKRVPLST 550 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ M+DEDF++ +F+ STHT VLFFSS G YK KV+RLP+G+PQARG Sbjct: 551 YRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPLGTPQARG 610 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++NIL L +GE I+T+MP PEDE++W +L+V FAT G+VRRN LSDF+ I +GKIA Sbjct: 611 KAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDIRANGKIA 670 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ +++++V+ C+ +DILL T+LG+ +RF + +RVF GR+S GVRGI L DQV Sbjct: 671 MKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIRLDDADQV 730 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM+++ H + D + R Y L+ND ++ + + Sbjct: 731 ISMSVLRHVEFDMETRDAY--------------------LRND------LTGPEAERMSE 764 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 EQ ILTV+E G+GKRTS+Y++RI+ R G+GI D+++ N G +VA FPV +D+I+L Sbjct: 765 SEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKN--GPVVASFPVGHDDEIML 822 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VSD GTLIR+PV++IRIA R T+GV++ TA++ERVVS R+ Sbjct: 823 VSDGGTLIRMPVDDIRIAGRKTQGVIVLRTAENERVVSTARL 864 >gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48] gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48] Length = 918 Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 512/900 (56%), Positives = 671/900 (74%), Gaps = 10/900 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI+ V+I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G +KKYVK Sbjct: 14 GISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMYEEGRTHDKKYVKS 73 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A I G+VMG+YHPHG+ AIYDAL RMAQ +S+RLLL++GQGNFGSVDGDPPAA RYTE R Sbjct: 74 ANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVDGDPPAAMRYTESR 133 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + +AA L+ D+ K+TVDF NYDG+ QEP VL +R PN+LVNG GGIAVGMATNIP HN Sbjct: 134 MTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGGIAVGMATNIPPHN 193 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+++ C+A++D+P++ + L+ I+ GPDFPTG ILGR+G + A TGRGS+++RG + Sbjct: 194 LGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEILGRSGARQALLTGRGSVIMRGKA 253 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E DRE I+VTE+PYQVNKA ++E IAE+VREKRI I+D+RDESDRQG R+VIEL Sbjct: 254 SVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIRDESDRQGMRMVIEL 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR AS DVILNQLYRY++LQ+ F VNM+ALN +P++ L +L+ F+ FREEVVVRRT+ Sbjct: 314 KRDASGDVILNQLYRYSALQTSFGVNMLALNHGRPQQMGLRKLLEIFLDFREEVVVRRTR 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKARDR HVLVGLAIAVAN+DE++ IIR S +P AR L ++W A D+ LI+LI Sbjct: 374 FELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAKNWPAGDMSPLIELI 433 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D + G + L+E Q RAIL L L+RLTGLGRD+I E +L I E L ILSSR Sbjct: 434 ADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTLAASIAEYLAILSSR 493 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+LGI+++EL VK PRR+ IV+G D+EDED I REDMVVTV+H GYVKR PLS Sbjct: 494 ERILGIVREELEEVKALYAEPRRSLIVDGEADIEDEDLIPREDMVVTVTHSGYVKRTPLS 553 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKGRSG+ M+DED +T ++ STH +LFFSS G YK KVWRLP+G+PQ++ Sbjct: 554 AYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYKLKVWRLPLGTPQSK 613 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA +N+L L++ E +T I+ PEDE++W+ L +VFAT+ G+VRRNKLSDF+ +NR+GKI Sbjct: 614 GKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRNKLSDFVNVNRAGKI 673 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL+ D I+ V CT++ D+LL+T G+ +RF + +RVF GR+S GVRG+ L + D Sbjct: 674 AMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEVRVFKGRDSTGVRGVRLGEDDT 733 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790 VISMAI+ +A ER Y+KH ++ R ++G T + + + + ++S ER Sbjct: 734 VISMAILRRVEATPAERAAYLKHAASLRAAVTGEGEEATVVVEEEAEEGAEDASLSVERI 793 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 EL E+FILT+++ GFGKRTSSYD+R + R G+GI A D+SK G LVA FPV D Sbjct: 794 AELGAAEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKRG--GKLVASFPVEDT 851 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAE 907 DQ++LV+D G LIR PV++IR+A R T+GV IF T+ E+VVSVER+ E+ + DEAE Sbjct: 852 DQLLLVTDGGQLIRTPVSQIRVAGRNTQGVTIFRTSG-EKVVSVERLAETAEEDGPDEAE 910 >gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] Length = 943 Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 515/888 (57%), Positives = 687/888 (77%), Gaps = 12/888 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G E+NK Y K A Sbjct: 13 ISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGYEFNKPYRKSA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IYDA+ RM Q++++RL LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 73 RIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRAAAMRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAAH LLDD+ K+TVDF+PNYD + +EP+VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 133 AKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A+IDNP + + L+E++ GPDFPTG ILGR+G++ A+ TGRGS+++RG +H Sbjct: 193 GEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAAHLTGRGSVIMRGRTH 252 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E SG R+ I+VTE+PYQVNKA+M+EKIAELVREK++ I+D+RDESDR+G RVVIE+K Sbjct: 253 FEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESDRRGVRVVIEVK 312 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+LNQL+RYT LQ+ F VNM+ALNG KPE L I++AF+ FREEV+ RRT + Sbjct: 313 RDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEAFITFREEVIRRRTIF 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH LVGLAIAVANLD V+++IR +P+P+ AR LM R W A D++ LI LID Sbjct: 373 ELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDWPAMDVEPLIKLID 432 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + DG LSE+Q RAIL+LRL RLTGL RD + EL +G +I+E L IL SR+ Sbjct: 433 EPGRMV-IDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQIEEYLHILRSRA 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL I++ EL+ +K+ TPRRT + E + + ED I RE+MVVTV++ GY+KRVPL+ Sbjct: 492 RLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVVTVTNTGYIKRVPLTT 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGG+GR+G+ MRDEDFVT +F+V+TH +LFFSS G VYK KV+RLP+G+PQARG Sbjct: 552 YRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYKMKVYRLPLGTPQARG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++NI+ LN+GERITT+MP PEDE +W+ L V+FAT+ GNVRRN+LSDF + +GKIA Sbjct: 612 KAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRNRLSDFTNVMSNGKIA 671 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D ++ V TCT E D+LLTT LG+ +RF + +RVFAGR S GVRGI LA+ D+V Sbjct: 672 MKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFAGRTSTGVRGIRLAEDDRV 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE---GNISEERCQE 792 ++I+ H +A + R Y+K SA RR SG+TE ++DS+++ G +S E ++ Sbjct: 732 NRLSILGHVEASAETRAAYLKQASALRR-ASGETEG----EDDSTLDAEPGVLSAEEFED 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L+ +E+F+LTV+ +GFGKRTS+Y++R++ R G+GI ++S+ N G +VA FP+ + DQ Sbjct: 787 LRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERN--GTVVAAFPIANEDQ 844 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRE 899 +++++D G LIR+PVN++RIA R T+GV +F + D E VVSV R+ E Sbjct: 845 VMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892 >gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum AMB-1] gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum AMB-1] Length = 895 Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/883 (57%), Positives = 664/883 (75%), Gaps = 30/883 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G +NK + K A Sbjct: 12 ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++AH LL+D+ K+TVDF+ NYD S EP+VL ARYPN+LVNG GGIAVGMATNIP HNL Sbjct: 132 ARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A ID+P++ ++ LME++ GPDFPTG ILGR GI+ A TGRGS+V+RG H Sbjct: 192 GEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLTGRGSVVMRGRVH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DRE IVVTEIPYQVNKA MLE+IAELVR+K+I I+DLRDESDR G R+V+E+K Sbjct: 252 IEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVEIK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+L QLYR+T LQ+ F VN +ALNG +PE TL I+ AF+AFREEV+ RRT + Sbjct: 312 RDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIAFREEVITRRTIF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P AR +LM R+W D++ LI LID Sbjct: 372 ELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLIRLID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + I DG LSEVQ +AIL+LRL RLTGL RD I +EL +G +I+ L ILSSR Sbjct: 432 EPGRAI-EDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILSSRP 490 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL+ +++ EL+ ++++ TPRRT I E + + ED I REDMVVTV++ GY+KRVPLS Sbjct: 491 RLMEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVTNTGYIKRVPLSA 550 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ ++DEDF+T +F+V+THT VLFFSS G YK KV+RLP+G+PQARG Sbjct: 551 YRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKVYRLPLGNPQARG 610 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L+ GE I+TIMP PEDE++W +L+V+F T G+VRRN LSDF ++ +GKIA Sbjct: 611 KAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLSDFTEVRANGKIA 670 Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL + ++SV+TC+ E +D+LL T G+ +RFP+ +R F R+S GVRGI L D+ Sbjct: 671 MKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDSTGVRGIRLDGEDE 730 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VISM+I+ H D D + R ++K G++ ++ ++ Sbjct: 731 VISMSILRHTDYDSETRDAFLK--------------------------GDLPADQMDKMV 764 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++QFILTV+E GFGKRTS++++RI+ R G GI D++ + G +VA FPVN D I+ Sbjct: 765 AEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGLVVASFPVNHEDDIM 822 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVSD G LIR+PV++IRIA R T+GV + TA++ERVVS R+ Sbjct: 823 LVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARL 865 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 4/107 (3%) Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLG 703 +++ T++G +R ++ R G LD + +++ E+DI+L + G Sbjct: 769 FILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHEDDIMLVSDGG 828 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + +R P+ IR+ AGR + GV + A+ ++V+S A + ++ DE Sbjct: 829 KLIRMPVDDIRI-AGRKTQGVTLLRTAENERVVSAARLCDIGSNGDE 874 >gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510] gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510] Length = 927 Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/888 (56%), Positives = 662/888 (74%), Gaps = 7/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G + K Y K A Sbjct: 12 IAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGGYDSTKPYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDA+ RMAQD+S+RL LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 72 RIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDPPAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAA LLDD+ KDT+DF+ +YD S +EP V+ AR+PN+LVNG GGIAVGMATNIPTHNL Sbjct: 132 AKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A IDNPD+ LD LME + GPDFPTG +ILGR+G + A TGRGSI++R +H Sbjct: 192 GEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLILGRSGSRAALQTGRGSIILRAKTH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ DR I+ TEIPYQVNKA ++E+I E+V +K I IADLRDESDR G RVVIELK Sbjct: 252 FEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDESDRDGVRVVIELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A DV+L QL+R+T LQ+ F VNM+ALNG +PE L+ ++ AFV FRE+V+ RRT++ Sbjct: 312 RDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLLDVITAFVRFREQVITRRTEF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KAR+RAH LVGLA+AVANLD ++ +IR +P+P AR E+M R W D+ LI+LID Sbjct: 372 LLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNREWPVHDVGPLIELID 431 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + GT LSEVQ RAIL+LRL RLTGL RD I EL + +I + L L++R Sbjct: 432 EPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDVTDQIADFLATLANRP 491 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+GI++ EL+ +K+ TPRRT I + + + ED I REDMVVTVS GYVKRVPLS Sbjct: 492 KLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVVTVSQSGYVKRVPLST 551 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGR+G+ M+ ED V+DLF+ +THT +L FS+ G VYK KV+RLP+G+PQARG Sbjct: 552 YRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYKLKVYRLPLGNPQARG 611 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L L GE ITT++P PEDE++W +L+VVFAT GNVRRN++SDF I +G IA Sbjct: 612 KAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRNRMSDFANIRSNGLIA 671 Query: 676 MKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 MKL+ E ++ V TC++ +DILL T+ G+C+RFP+ +RVFAGR S GVRGI LA GD+ Sbjct: 672 MKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGRTSTGVRGIKLADGDE 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGD-TEEITSLKNDSSVEGNISEERCQEL 793 V+S++I+ H DA +ER + K + + G+ E + DS +++ER +EL Sbjct: 732 VVSLSILAHVDATPEERAAFFKMKRDEGLEMEGEAAPEADEVPTDSV---TLTQERYEEL 788 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K KEQ+ILTVS++G+GKR+SSY++R + R G+GI ++ + N G++VA FPV N Q+ Sbjct: 789 KQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERN--GSIVAAFPVESNHQV 846 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++V++ G +IR+P++++R+A R T GV +F DERVVSV I E + Sbjct: 847 MMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAEED 894 Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust. Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 4/104 (3%) Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLG 703 Y++ + G +R+ ++ R G+ M++ R+ I++ + +++ T G Sbjct: 794 YILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMVTNGG 853 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 Q +R P+ +RV AGR ++GV + ++V+S+A + D + Sbjct: 854 QVIRMPLHDVRV-AGRKTLGVTLFRVGADERVVSVATIAEEDGE 896 >gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] Length = 924 Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/903 (56%), Positives = 658/903 (72%), Gaps = 9/903 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+GI +SIT+EMQ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G +K++ Sbjct: 23 EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A + G+V+GKYHPHG+ A+YDAL RMAQ +S+RL L++GQGNFGS+D DPPAA RYTE Sbjct: 83 KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ A LL D+ KDTVDF YDG QEP VL AR+PN+LVNG GGIAVGMATNIP Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D V +ID P + + L+ I+ GPDFPTGA I+G++G + A TGRGS+V+R Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIMGQSGARQALLTGRGSVVMRA 262 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E+ DR I+V++IP+QVNKAAM+E+IA LVREK++ IADLRDESDR G RVVI Sbjct: 263 TTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVVI 322 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A+V+LN LY+ + LQ+ F+ N++ALN +PE+ TL +LK+FV FREEVV RR Sbjct: 323 ELKRDANAEVVLNNLYKQSPLQTSFAYNLLALNRGRPEQMTLRTVLKSFVDFREEVVTRR 382 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+LL KARDRAHVLVGLAI+VAN+DEVVR+IR +PNP AR LM R+W A D+ L+ Sbjct: 383 TKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLASLVA 442 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+ D +++ DG++ LSE Q RAIL+LRL RLT LGRD+I +EL SL +I + L IL Sbjct: 443 LVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQILR 502 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R R+L IIK EL V++ TPR+T+ ++ ++MEDED I REDMVVTVSH GYVKR Sbjct: 503 DRDRVLTIIKDELADVRERFATPRKTQFIDA-IEMEDEDLIAREDMVVTVSHAGYVKRTS 561 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YRAQRRGGKGRSG+ M+D+DF++ LF+ +THT +LFF+ G YK K+WRLP G P Sbjct: 562 LDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKLKLWRLPEGGPT 621 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RGKA IN+L L+QGER+T I+P P+DE+ W ++ +VFAT+ GNVRRNKLSDF +N++G Sbjct: 622 SRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNKLSDFTNVNKAG 681 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAMKLD D ++ V + DILLTT+ G +RFP+ A+RVF+GR S GVRGI Sbjct: 682 KIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTSTGVRGIRFKPN 741 Query: 733 DQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+ V+SMAI+ H D +E Y+KH +A RR +G+ E S E +S Sbjct: 742 DEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRR-AAGEGETEGSDAEAEGSEAALST 800 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ER ++ EQFILT +E G+GKRTSS+++R S R G+GI S N G +VA FPV Sbjct: 801 ERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTSARN--GRVVASFPV 858 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D+I+LV+D G LIR V +IR+A R T+GV I +T + ERVVSVE + E++ D+ Sbjct: 859 EDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVSVEHVPEAQNDDDLP 918 Query: 908 STE 910 E Sbjct: 919 DDE 921 >gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] Length = 922 Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/895 (55%), Positives = 666/895 (74%), Gaps = 9/895 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M G + K Y K A Sbjct: 11 ISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDSTKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ AIYDA+ RMAQD+S+RL LI+GQGN+GS+DGDPPAA RYTE RL Sbjct: 71 RIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAAMRYTEARL 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAA FLLDD+ K+TVDF+PNYD S EP VL A++PN+LVNG GGIAVGMATNIPTHNL Sbjct: 131 AKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMATNIPTHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C A IDNP+I +D L++I+ GPDFPTGA+ILGR+GI++AY TGRGSIV+R + Sbjct: 191 GEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALILGRSGIRSAYHTGRGSIVMRAKTD 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DR IVVTEIPYQVNKA + E+IAE+V EK + I+D+RDESDR G RVVIELK Sbjct: 251 IEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRDGVRVVIELK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ADV+LNQL+R+T LQ+ F VNM+ALNG +PE L I+ AFV FRE+V+ RRT++ Sbjct: 311 RDAVADVVLNQLFRFTPLQTSFGVNMLALNGGRPELLDLKSIIAAFVRFREQVITRRTEF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH LVGLA+AVAN+DE++ +IR +P+P TAR ++M R W A D+ LI LID Sbjct: 371 ELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPALDVAPLIQLID 430 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + GT LSE Q +AIL+LRL RLTGL RD I ELN + +I+ L IL+ R Sbjct: 431 EPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIRHLLAILADRG 490 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LL I++ EL+ +K PRRT I E + + ED I REDMVV V+ GY+KRVP+S Sbjct: 491 LLLDILRGELVDMKARFGNPRRTTIEELEFEADVEDLIQREDMVVIVTQGGYIKRVPVST 550 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKGRSG+ ++ ED V+DLF+ +THT +LFF++ G VY KVWRLP G+PQ RG Sbjct: 551 YRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYTLKVWRLPQGTPQTRG 610 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N+L L +G+ ITT+MP PED++SW +L+V+FAT G VRRN+LSDF I +G IA Sbjct: 611 KALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGVRRNRLSDFANIRSNGLIA 670 Query: 676 MKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 MKL+ E +++ C++ +D+LL+T+LG+C+RFP+ IRVF+GR S GVRGI L + GD Sbjct: 671 MKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGRTSTGVRGIKLVEDGD 730 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI--SGDTEEITSLKNDSSVEGN--ISEER 789 +VI M+I+ H D ++R Y+K R+ + D +E ++ + VE + + +E Sbjct: 731 EVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVEAE-PVETSLVLPQEL 789 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E++ E+ ILTVSE+GFGKRTS+Y++R++ R G+GI D+ + N+ A+ AVFP+++ Sbjct: 790 FIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGERNK--AIAAVFPISE 847 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 DQ++++SD G +IR+PV++IR+ R +KGV +F DERVVSV R+ E D Sbjct: 848 TDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVARLAEEAAGD 902 >gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15] gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000] gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15] gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000] Length = 919 Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/889 (56%), Positives = 652/889 (73%), Gaps = 6/889 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + G + YVK A Sbjct: 17 IAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQGNFGSVDGD PAA RYTECR+ Sbjct: 77 RVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECRM 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL DL KDTVDF NYDG QEP VL +R PN+LVNG GGIAVGMATNIP HNL Sbjct: 137 APPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C+ +ID PD+ D L++++ GPDFPTG I+GR G + A TGRGS+++RGV+ Sbjct: 197 GEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQALLTGRGSVIMRGVAS 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ RE I+VTEIPYQVNKA ++E IAELVR+K+I +AD+RDES+R G R+V+ELK Sbjct: 257 VEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADIRDESNRDGMRIVVELK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS +VILNQLYR+T+LQS F VNM+ALN +PE+ L +++ FV FREEVVVRRTK+ Sbjct: 317 RDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQLFVDFREEVVVRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDR HVLVGL IAVAN+DE + IIR S +P AR L+ +SW A D+ L++LI Sbjct: 377 ELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVELIA 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D G + L++ Q RAIL L L+RLTGLGRD+I NE +L I+ L++LS R+ Sbjct: 437 DPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAALADAIRGYLELLSDRA 496 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ ++++EL+ V+++ PRR +IV+G DMEDED IVREDMV+TV+ GYVKR PL+ Sbjct: 497 NIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMVITVTMGGYVKRTPLAN 556 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG+SG+ ++ED VT +F STH +LFF+S G VYK KVWRLP+G +RG Sbjct: 557 YRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRLPLGVANSRG 616 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L + GE IT+I+ PEDE++W L V+FAT+ G+VRRNKLSDF+ + R+GKIA Sbjct: 617 KAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRRNKLSDFVDVRRNGKIA 676 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D I+ V C + D+LLTT G+C+RF + +RVFA R+S GVRG+ L GDQV Sbjct: 677 MKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGVRGVKLLDGDQV 736 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS----VEGNISEERCQ 791 ISMA++ DA ER Y+KH A R G+ E T+ D E +++ ER Sbjct: 737 ISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADDGDEEVGEASLTPERIA 796 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 EL E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK G LV FP++++D Sbjct: 797 ELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG--GRLVGSFPIDESD 854 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 QI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+ +S Sbjct: 855 QILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLADS 903 >gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] Length = 935 Score = 1013 bits (2619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/902 (55%), Positives = 662/902 (73%), Gaps = 8/902 (0%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 +GI +SI E++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G +KKYVK Sbjct: 29 QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I G+VMG+YHPHG++AIYDAL RMAQ +S+ LLL++GQGNFGSVDGDPPAA RYTE Sbjct: 89 SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ KAA L+ D+ K T+DF NYDGS +EP VL +R PN+LVNG GGIAVGMATNIP H Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VD C+AV+D+P + ++ L+ I+ GPD+PTG ILGR+G + A TGRGS+V RG Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEILGRSGARLALMTGRGSVVTRGK 268 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE DRE IV+TEIPYQVNK++M+E IAELVR+KRI I+D+RDESDRQG RVV+E Sbjct: 269 ASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVVE 328 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR AS DVILNQLYR+TSLQ+ F VNM+AL+ +P++ L +L F+ FRE+VVVRR Sbjct: 329 LKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGRPQQMGLRRLLDIFLDFREDVVVRRI 388 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ LNKARDR HVLVG+ IAVAN+DEV+ IIR S +P AR L ++W + D+ LIDL Sbjct: 389 RFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLIDL 448 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 I D + + L++ Q RAIL L L+RLTGLGRD+I +E +L I L+ILSS Sbjct: 449 IADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEILSS 508 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R++ I+++EL+ VK + PRRT+I E D+EDED I REDMVVTV+H GYVKR PL Sbjct: 509 RERIMAIVREELVEVKAQFAVPRRTQIAESEGDIEDEDLIPREDMVVTVTHSGYVKRTPL 568 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S+YR Q RGGKGRSG+ M+DED + ++ STH +LFFSS G +K KVWRLP+G+PQ+ Sbjct: 569 SMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKVWRLPVGNPQS 628 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GKA +N+L + G+ I+ I+ PE+E+ W+ L ++FAT+ G++RRNKLSDF+ +NR+GK Sbjct: 629 KGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNVNRAGK 688 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAMKL+ D I+ V C+ + D+LL+T G+ +RF + +RVF GR+S GVRG+ L D Sbjct: 689 IAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVRLLGDD 748 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLI--SGDTEEITSLKNDSSVEGNISE---E 788 +VISMAI+ +DA ER Y+K SA+R + S D E +++DS +I+E E Sbjct: 749 KVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIAELTDE 808 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R ELK +E+FILT+S+ GFGKR+SS++FR + R G+GI A D+SK G L A FP+ Sbjct: 809 RYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKRG--GKLAACFPIE 866 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D I+LV+ G LIR V ++RIA R T+GV IF TA ERVVSVER+ +S DEA + Sbjct: 867 ATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRTAGGERVVSVERLPDSG-EDEAGT 925 Query: 909 TE 910 E Sbjct: 926 DE 927 >gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756] gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756] Length = 918 Score = 1012 bits (2617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/901 (55%), Positives = 656/901 (72%), Gaps = 5/901 (0%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EH + I ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + Sbjct: 4 EHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHE 63 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G + YVK AR+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQGNFGSVDG Sbjct: 64 QGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGSVDG 123 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTECR+ A LL DL KDTVDF NYDG QEP VL AR PN+LVNG GGI Sbjct: 124 DMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGAGGI 183 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGEV+D C+ +ID P+I D L++++ GPDFPTG I+GR G + A Sbjct: 184 AVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEIIGRAGPRQALL 243 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGS+++RGV+ +E RE I+VTEIPYQVNKA ++E IAELVR+K++ IAD+RDE Sbjct: 244 TGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADIRDE 303 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+R G R+VIELKR AS +VILNQLYR+T+LQS F VNM+ALN +PE+ L +L+ FV Sbjct: 304 SNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHKLLQLFV 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P AR L+ +SW Sbjct: 364 EFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSW 423 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 A D+ L++LI D G + L++ Q RAIL L L+RLTGLGR++I NE +L Sbjct: 424 PAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAETLAD 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ L++LS R+ ++ ++++EL+ V+++ PRR +IV+G DMEDED IVREDMV+TV Sbjct: 484 AIRGYLELLSDRANIMAVVREELVEVREKFAVPRRCQIVDGDADMEDEDLIVREDMVITV 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR PL+ YR Q RGGKG+SG+ ++ED VT +F STH +LFF+S G VYK K Sbjct: 544 TMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 VWRLP+G +RGKA +N+L + GE IT+I+ PEDE++W+ L V+FAT+ G+VRRNKL Sbjct: 604 VWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRRNKL 663 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF+ + R+GKIAMKLD D I+ V C + D+LLTT G+C+RF + +RVFA R+S Sbjct: 664 SDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDST 723 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS--GDTEEITSLKNDSS 780 GVRG+ LA+GD+VISMA++ DA ER Y+KH A R GD + + + + Sbjct: 724 GVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEGDDAPVAAEEGEED 783 Query: 781 VEG-NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +S ER EL E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK G Sbjct: 784 ADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKRG--G 841 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER+ + Sbjct: 842 RLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVERLAD 901 Query: 900 S 900 S Sbjct: 902 S 902 >gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31] gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31] Length = 922 Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/888 (55%), Positives = 648/888 (72%), Gaps = 5/888 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF M + G + YVK A Sbjct: 21 VTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERSYVKSA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+A+IY L RM Q +S+ L+LI+GQGNFGSVDGD PAA RYTECR+ Sbjct: 81 RVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGSVDGDMPAAMRYTECRM 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL DL KDTVDF+ NYDG QEPVVL +R PN+LVNG GGIAVGMATNIP HNL Sbjct: 141 APPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VD C+ +ID PD+ D L++++ GPDFPTG I+GR G + A TGRGS+++RG++ Sbjct: 201 GEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEIIGRAGPRQALLTGRGSVIMRGLAT 260 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ RE I++T IPYQVNK+ ++E IAE+VR+KRI ++D+RDES+R G R+V+ELK Sbjct: 261 VEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEGVSDIRDESNRDGMRIVVELK 320 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS +VILNQLYR+T+LQS F VNM+ALN +P + L ++ FV FREEVVVRRTK+ Sbjct: 321 RDASGEVILNQLYRFTALQSSFGVNMLALNRGRPSQMGLRELIDIFVKFREEVVVRRTKF 380 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDR HVLVGL IAVAN+DE + IIR S +P AR L+ ++W A D+ L++LI Sbjct: 381 ELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKAWPAGDMLPLVELIA 440 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D G + L++ Q RAIL L L+RLTGLGRD+I NE SL IK LD+LS R+ Sbjct: 441 DPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAASLAEAIKGFLDLLSDRA 500 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ ++++EL+ V+++ PRR +IV+G D+EDED IVREDMV+TV+ GYVKR PL+ Sbjct: 501 NIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLIVREDMVITVTLGGYVKRTPLAA 560 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG+SG+ + ED VT +F STH +LFF+S G VYK KVWRLP G +RG Sbjct: 561 YRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSGGKVYKMKVWRLPQGVANSRG 620 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L + GE IT+I+ PEDE++W+ L V+FAT+ G+VRRNKLSDF+ + R+GKIA Sbjct: 621 KAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSGSVRRNKLSDFVDVRRNGKIA 680 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D I+ V C DILL T G+C+RF +RVFA R+S GVRG+ LA GD V Sbjct: 681 MKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRVFASRDSTGVRGVRLAPGDSV 740 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV---EGNISEERCQE 792 ISM+++ + DA ER Y+KH A R + + +E + DS E +++ ER E Sbjct: 741 ISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAAVEDSEEDVGEASLTPERIAE 800 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L E+ +LTVS +GFGKRTS+YD+R + R G+G+ A D+SK G LV FPV+++DQ Sbjct: 801 LGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDLSKRG--GKLVGSFPVDESDQ 858 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 I+LV+D G LIRVPV++IR+A+R T+GV IF TA DE VVSVER+ E+ Sbjct: 859 ILLVTDAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVVSVERLAET 906 >gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] Length = 913 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/887 (55%), Positives = 654/887 (73%), Gaps = 7/887 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + + + Y KCA Sbjct: 6 ISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+G++HPHG+A++Y AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE ++ Sbjct: 66 RVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL D+ KDTVDF+PNYD EPVVL AR PN+LVNG GGIAVGMATNIP HNL Sbjct: 126 APAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D VA++D+PD+ DAL++I+ GPDFPTG I+GRT +NA GRGS+++RG + Sbjct: 186 REVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGKAS 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DR+ I++TE+P+QVNK ++E+IAE+VREKR+ IAD+RDESDR G R+VIELK Sbjct: 246 IEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS DVILNQLYRYT+LQS F VNM+ALN +PE+ L +L+ F+ FREEVVVRR K+ Sbjct: 306 RDASGDVILNQLYRYTALQSSFGVNMLALNHGRPEQMGLRKLLELFLDFREEVVVRRVKF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDR HVLVGLA+AVAN+DEV+ IIR S +P AR L ++W D+ L++LI Sbjct: 366 ELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALVELIA 425 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + L++ Q RAIL L L+RLTGLGRDDI E +L I+ L ILS R Sbjct: 426 DPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTILSDRK 485 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II+++LL VKD+ RRT I EG +MEDED I REDMVVTV+H GYVKRV L+ Sbjct: 486 NVLAIIREDLLLVKDQFGVDRRTLIGEGDAEMEDEDLIPREDMVVTVTHSGYVKRVALNA 545 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKGRSG+ M+DED VT +F STHT VLFF++ G YK K WRLP+G+PQ+RG Sbjct: 546 YRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSRG 605 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L + G+ I ++P PEDE++W + ++FAT+ G+VRRNKLSDF +NR+GKIA Sbjct: 606 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATVNRAGKIA 665 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D ++ V CT E+D+LLTT LG+ +RF +RVF GR+S GVRGI L GD V Sbjct: 666 MKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIRLQDGDTV 725 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEE-ITSLKNDSSVEGN--ISEERCQ 791 ISMAI+ DA +ER Y+KH +A R+ ++G D EE + +++ D G+ +S ER Sbjct: 726 ISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAALSVERIA 785 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVNDN 850 EL EQFILTV+E GFGKR+S+Y++R + R G+G+ A + G L A FPV ++ Sbjct: 786 ELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGTRLAAAFPVEES 843 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D ++LV+D G +IR PV+++RI R+++GV IF T KDE+VVSVER+ Sbjct: 844 DDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTIFRTGKDEKVVSVERL 890 >gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] Length = 927 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/902 (53%), Positives = 668/902 (74%), Gaps = 19/902 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M G +W + Y K A Sbjct: 11 IAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGYDWTRPYRKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG+YHPHG++AIYDA+ RMAQD+S+RL L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 71 RIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPPAAMRYTEARL 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAA LL D+ K+TVD+ PNYD + +EP VL A YPN+LVNG GGIAVGMATNIP HNL Sbjct: 131 AKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVGMATNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD C+A++DNP I +D L+ ++ GPDFPTG +ILGR+GI+ AY TGRGS+V+RG + Sbjct: 191 GEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLILGRSGIREAYHTGRGSVVMRGRAE 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ DR IVVTEIPYQVNK+ ++E+I E+VR+K + I+DLRDESDR G RVV+ELK Sbjct: 251 IEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDRDGVRVVVELK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LNQLYRYT LQ+ F VNM+ALN +P + L ++ AFV FREEV+ RRT++ Sbjct: 311 RDAIGEVVLNQLYRYTQLQTSFGVNMLALNRGRPVQMNLRDVIFAFVEFREEVITRRTRF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL+KAR+RAHVL GL +A+ NLD V+ +IR +P+ ARR+L +W A+D+ D I +ID Sbjct: 371 LLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPATDVIDFIAIID 430 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + +GT LS+ Q RAIL+LRL RLTG+ R + +E + IK+ LDIL+SR Sbjct: 431 DPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIKDYLDILTSRP 490 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL+G+++ ELL ++ RRT I+E + + ED I REDMVVTVS+ GY+KRVPL+ Sbjct: 491 RLMGVLRDELLQTREAWANDRRTEIMESEFEHDIEDLIAREDMVVTVSYSGYIKRVPLAT 550 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGR+G+ RDED+V L++ ++H+ +LFF+S G VY+ K +RLP G+PQ+RG Sbjct: 551 YRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKTYRLPEGTPQSRG 610 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L +GE I T+MP P DESSW+ L+V+FAT G +RRN LSDF INR+GK A Sbjct: 611 RPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALSDFTNINRAGKRA 670 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKLD D +++V C + +D+LL + G+ +RF ++ +R+F GR+S+GVRGI LAKGD+V Sbjct: 671 MKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGRDSLGVRGIRLAKGDEV 730 Query: 736 ISMAIVLHAD-----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +SM+I+ H D + +ER Y++ + RR SG+ +E + S+ + + E+R Sbjct: 731 VSMSILHHVDYESVDGEQNERDVYLRQAAWIRRG-SGEGDE-----DASAPDVMLREDRF 784 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L E+F+L+V+EKG+GKRTS++++R++ R G+GI + DV+ N G +V FPV Sbjct: 785 IALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKN--GPVVTAFPVTPT 842 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------EIVD 904 DQI+LV+D G +IR PV++IR+A+R T+GVV+F +DE+VVSV + E+ E+ D Sbjct: 843 DQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDDDNVEVAD 902 Query: 905 EA 906 EA Sbjct: 903 EA 904 >gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3] Length = 675 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/665 (72%), Positives = 568/665 (85%), Gaps = 1/665 (0%) Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAA Sbjct: 10 DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 H LLDDL K+TVDFR NYDG+ EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+ Sbjct: 70 HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 DGC+A+I++P I+L LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPM 189 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 GDREQI++TEIPYQVNKA M+EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+ Sbjct: 190 RGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDAN 249 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 A+VILNQLYRYT LQ+ F NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL K Sbjct: 250 AEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRK 309 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 AR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + Sbjct: 310 ARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRH 369 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 I D T LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ Sbjct: 370 RINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQT 429 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 I+K EL +V+DE TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQ Sbjct: 430 IVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQ 489 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGGKGRSG+ RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALI Sbjct: 490 RRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALI 549 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L L GERITTI+P PEDE SW+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL+ Sbjct: 550 NMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLE 609 Query: 680 SR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DEILSVETCT+ +D+LLTT LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM Sbjct: 610 EEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 669 Query: 739 AIVLH 743 IV H Sbjct: 670 TIVGH 674 Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 14/158 (8%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSS-------VEGNISEERCQELKLKEQFILTVSEK 806 Y+ +S++ R+ + +E+T+++++ V+G + E ++L +E ++TVS Sbjct: 417 YLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIVDGGL-EMDDEDLIAREDMVVTVSHL 475 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+ KR +R R GKG + + L F VN + ++ S +G + + Sbjct: 476 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRL---FVVNTHTPVLFFSSRGIVYKEK 532 Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 V + I + ++G + + A ER+ ++ + E E Sbjct: 533 VWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDE 570 >gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] Length = 923 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/897 (56%), Positives = 650/897 (72%), Gaps = 11/897 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I DEM+ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M + G +K Y K A + Sbjct: 14 VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG+YHPHG++AIYDALARMAQ +S+ L L++GQGNFGS+DGDPPAA RYTE R+ Sbjct: 74 GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTV+FR NYDGS QEPVVL ARYPN+LVNG GGIAVGMATNIP HNL EV Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD VA++D PDI L+E + PDFPTG I+GR+G + A GRGS+++R + IE Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKALLEGRGSVILRAKTSIED 253 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 RE I+V EIPYQVNKA M+EKIAELVR+KRI I+DLRDESDR G RVVIELK+ A Sbjct: 254 IRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIELKKDA 313 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+VILNQLYR++ LQ+ F VNM+AL G +P++ L L+ F+ R+EVVVRRTK+ L Sbjct: 314 NAEVILNQLYRWSPLQTSFGVNMLALIGGRPQQAGLRVFLETFIHHRKEVVVRRTKFDLR 373 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDRAHVL+GLA+AVAN+DE++ +IR +P+P+TAR++L ++W A D+ L++L+ D Sbjct: 374 KARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVELVADPR 433 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 I DG + L+E Q +AIL+LRL RLT LGRD+I +E N L I + LDIL S +R+ Sbjct: 434 SQI-RDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRSPTRIR 492 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ ELL K RR+ I+EG L +EDED I REDMVVT++H GYVKR LS YRA Sbjct: 493 DIIRNELLDSKASFGVERRSAIIEGDLGIEDEDLIPREDMVVTLTHGGYVKRTALSTYRA 552 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGGKGR+G+ M+DEDFV LF+ STH +LFFSS G VYK K WRLP+G+P +GK L Sbjct: 553 QNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWRLPLGAPNTKGKYL 612 Query: 619 INIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 N+L SLN G IT++M PEDE SW+ V+FAT G VRRNKLSDF+Q+NR+GKIAMK Sbjct: 613 TNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRRNKLSDFVQVNRNGKIAMK 672 Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD +IL V C ++ D+LL + G+ +RFP+ +RVFA RNS GVRGI L + D++I Sbjct: 673 LDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFASRNSTGVRGIRLKENDRLI 732 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDSSVEGNI--SEERCQEL 793 SMAI+ H D DE YM+H +A RR + ++ + S D ++ S ER EL Sbjct: 733 SMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPERIAEL 792 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E+F+LTV++ G GKR+S+YD+R+ R +G+ A D+SK+ E L A FPV D D + Sbjct: 793 GAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKVKE---LAACFPVIDGDTV 849 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + V+D G LIR PV+ +RIA+RATKGV + A+ E+VVSV RI ESE D+A + E Sbjct: 850 MAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVVRIAESE--DDASAEE 904 >gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] Length = 927 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/897 (54%), Positives = 654/897 (72%), Gaps = 7/897 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + + + Y KCA Sbjct: 22 ISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKCA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+L++GQGNFGSVDGD PA+ RYTE ++ Sbjct: 82 RVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKM 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA L+ D+ KDTVDF+PNYD EPVVL +R PN+LVNG GGIAVGMATNIP HNL Sbjct: 142 APAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD +A++D+P++ DAL++I+ GPDFPTG I+GRT +NA GRGS+++RG + Sbjct: 202 GEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGRAS 261 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ DRE IVVTE+PYQVNK ++E+IAE+VREKR+ I+D+RDESDRQG R+VIELK Sbjct: 262 VEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLEGISDVRDESDRQGMRIVIELK 321 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS DVILNQL+RYT++QS F VNM+ALN +PE+ L +L+ F+ FREEVVVRR K+ Sbjct: 322 RDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRDLLQIFLDFREEVVVRRVKF 381 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKARDR HVLVGLA+AVAN+DEV+ IIR S +P AR L + W D+ L++LI Sbjct: 382 ELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEARERLQAKPWPVGDMMALVELIA 441 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + ++ L++ Q RAIL L L+RLTGLGRDDI E N L I+ L ILS R Sbjct: 442 DPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIFGEANGLADTIQGHLTILSDRK 501 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II+ +L+ VKD+ PRRT I EG +MEDED I REDMVVTV+H GYVKRV L+ Sbjct: 502 NVLAIIRDDLIDVKDKFAVPRRTLIGEGDGEMEDEDLIPREDMVVTVTHGGYVKRVALNA 561 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG+SG+ M+DED +T +F STHT VLFF++ G YK K WRLP+G+PQ+RG Sbjct: 562 YRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSRG 621 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L + G+ I ++P PEDE++W + ++FAT G+VRRNKLSDF +NR+GKIA Sbjct: 622 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSSGDVRRNKLSDFATVNRAGKIA 681 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D ++ V CT ++D+LLTT LG+ +RF +RVF GR+S GVRG+ L GD+V Sbjct: 682 MKLEGDDRMVGVGLCTADDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGVRLQDGDEV 741 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNISEERCQ 791 ISMAI+ DA +ER Y+KH +A R+ ++G E + D + ++ ER Sbjct: 742 ISMAILGRVDATPEERSAYVKHANAMRKALAGAEAEEDVAAPAEAEDEVADAALTVERIA 801 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVNDN 850 EL EQFILTV+E GFGKR+S+Y++R + R G+G+ A + G L A FPV + Sbjct: 802 ELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGTRLAAAFPVEET 859 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D ++LV+ G +IR ++++RI R+++GV IF T KDE+VVSVER+ ES DEA+ Sbjct: 860 DDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEAD 916 >gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264] Length = 933 Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/898 (54%), Positives = 649/898 (72%), Gaps = 8/898 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + + + Y KCA Sbjct: 31 IAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKCA 90 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+LI+GQGNFGSVDGD PA+ RYTE R+ Sbjct: 91 RVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEARM 150 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL D+ KDTVDF+PNYD EPVVL AR PN+LVNG GGIAVGMATNIP HNL Sbjct: 151 APAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHNL 210 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VD C+A++D+P++ DAL++I+ GPDFPTG ILGRT +NA GRGS+V+RGV+ Sbjct: 211 GEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEILGRTAPRNALRDGRGSVVVRGVAS 270 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E DRE IVVTE+P+QVNK ++E+IAE+VREKR+ I+D+RDESDR G R+VIELK Sbjct: 271 VETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIELK 330 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS DVILNQL+RYT++QS F VNM+ALN +PE+ L +L+ F+ FREEVVVRR K+ Sbjct: 331 RDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRKLLEVFLDFREEVVVRRVKF 390 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDR HVLVGLA+AVAN+DEV+ IIR S +P AR L ++W D+ L++LI Sbjct: 391 ELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALVELIA 450 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + ++ L++ Q RAIL L L+RLTGLGRDDI E L I+ L ILS R Sbjct: 451 DPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTILSDRK 510 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II+++LL V+++ PRRT I EG ++EDED I REDMVVTV+H GYVKRV L+ Sbjct: 511 NILAIIREDLLDVRNQFAVPRRTLIGEGDFELEDEDLIPREDMVVTVTHGGYVKRVALNA 570 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG+SG+ M+DED +T +F STHT VLFF++ G YK KVWRLP+G+P +RG Sbjct: 571 YRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVWRLPLGAPTSRG 630 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA +N+L + G+ I ++P PEDE++W + ++FAT+ G+VRRNKLSDF +NR+GKIA Sbjct: 631 KAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSDFATVNRAGKIA 690 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 MKL+ D ++ V CT E+D+LLTT G+ +RF +RVF GR+S GVRG+ L D V Sbjct: 691 MKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGVRGVRLQGDDAV 750 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGN---ISEERC 790 ISMA++ DA DER Y+KH +A R+ +E T ++ D + EG IS ER Sbjct: 751 ISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEEGGDAPISPERI 810 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849 L EQFILTV+E GFGKR+S+Y++R + R G+G+ A + G L A FPV + Sbjct: 811 AALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLG--GRAGKRLAAAFPVEE 868 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +D ++LV+ G +IR V ++RI R+++GV IF TA+ ERVVSVER+ E+ DE E Sbjct: 869 SDDLLLVTSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSVERLAETGGGDEPE 926 >gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654] gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654] Length = 917 Score = 981 bits (2535), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/884 (55%), Positives = 638/884 (72%), Gaps = 10/884 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S++I EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G +K Y K +R Sbjct: 25 SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 + MG+YHPHG+AAIYDALARM QD+S+ L L++GQGNFGS+DGD PAA RYTE R++K Sbjct: 85 VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AA LL+D+ KDTVDF+ NYDG +EP+VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R + +E Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVILRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV E+P+QVNKA M+EKIA+LVR+K++ IA ++DESDR G RVVIELKR Sbjct: 265 EIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQL+R+T LQ+ F NM+ALNG KPE+ TL L+ F+ FREEVV RRT +LL Sbjct: 325 ATPEVVLNQLFRFTQLQTSFGCNMLALNGGKPEQLTLRDFLRHFITFREEVVARRTAFLL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KARDR+H+L GLA+AV+N+DEVV IR S + AR +LM R W A DI D I L+DD Sbjct: 385 RKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLVDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSE Q RAILELRL RLT +G ++ +EL L +I+E LDIL SR R+ Sbjct: 445 THTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSRDRI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL +VKDE PRR+ IVE DM+DED I REDMVVT++ G+ KR PL+ YR Sbjct: 505 MAIISDELTAVKDEFAVPRRSEIVEWSGDMDDEDLIEREDMVVTITQSGWAKRTPLAEYR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q+RGGKG SG+ +DED +T LF+ +THT +LFF++ G YK K WRLP+G +RGKA Sbjct: 565 EQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRLPLGGRTSRGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE+ W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 684 Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-LAKGD 733 + DE +++ C + +D++L T G+ +RFP+ +RVF RNS GVRGI L K D Sbjct: 685 FEGEDENTRLINARICDENDDVMLVTNKGRAIRFPVPDVRVFNSRNSTGVRGIRLLGKDD 744 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM+++ H DA +ER Y+K RR ++G E S D +VEG I++ER +E+ Sbjct: 745 EVVSMSVIRHFDATSEERTAYLK----MRRQMAGADETDDSDDEDEAVEGAITQERFEEM 800 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + E+ ILT++EKG GK +SS+D+ + R G+G+ T +K G LVA FPV DQ+ Sbjct: 801 QAAEELILTITEKGLGKLSSSHDYPVRGRGGQGV--TAFTKAMPGGDLVACFPVGMEDQV 858 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L + KG IR PVN I SR GV +F+T K E VVSV I Sbjct: 859 MLATSKGQSIRCPVNGISFRSRGAGGVKVFNTGKGESVVSVAWI 902 >gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] Length = 928 Score = 971 bits (2510), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/896 (54%), Positives = 641/896 (71%), Gaps = 12/896 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 41 TVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARP 100 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 101 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 160 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+L D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 161 PAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 220 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PD+ + L++ + GPDFPTG V+LGR+G + AY GRGS++IR + +E Sbjct: 221 VVDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 280 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKA+M+EKIAE VREKRI +A ++DESDR G RVV+ELKR Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 340 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT Y L Sbjct: 341 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYNL 400 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM R W ASDI I LIDD Sbjct: 401 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLIDDP 460 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSEVQ RAILELRL RLT LG ++ +EL L +IKE L+ILSSR R+ Sbjct: 461 THTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRERI 520 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V++ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL+ +R Sbjct: 521 MGIIADELTEVRNSFAVPRRTEIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLADFR 580 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP G A+GKA Sbjct: 581 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTAKGKA 640 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP E WN+L ++FAT G VRRN+LSDF + R+GKIAMK Sbjct: 641 IVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMK 700 Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + +E +++ C++++DI+L T G+ +RFP + +RVF RNSVGVRGI L GD+ Sbjct: 701 FEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGDE 760 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H+ ++R Y+K RR ++G T+E S D+ + N S E E+ Sbjct: 761 VVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDEDAS-DEDAVEDPNFSTELFAEMS 815 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ G GK +SS+D+ + R G G+ A D K GALVA FPV +DQI+ Sbjct: 816 AAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGALVASFPVELDDQIM 873 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 L + KG IRVPV+ I SR+ GV IF+T K E VVSV I ++ D+ E+ E Sbjct: 874 LATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNG--DDEETVE 927 >gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] Length = 908 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/896 (54%), Positives = 632/896 (70%), Gaps = 15/896 (1%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 ++ E + G +VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G Sbjct: 4 NTPERPQYGGPTVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNT 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K AR G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD A Sbjct: 64 HDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A LL D+ KDTVDF+ NYDG EP VL AR+PN+LVNG GGIAVGM Sbjct: 124 AMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGEV D +A+I+NPD+ + L+E I GPDFPTG ++LGR+G + AY GRG Sbjct: 184 ATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIMLGRSGARKAYIEGRG 243 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+VIR + IE+ DR IV+ EIPYQVNKAAM+EKIAE VREKRI IA ++DESDR Sbjct: 244 SVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDRH 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVV+ELKR A+A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL G L AF+ FRE Sbjct: 304 GVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLHGFLSAFITFRE 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KARDR+HVL GLA+AV+N+DEVV IR S + AR +LM R W A D Sbjct: 364 EVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAGD 423 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 I + I LIDD ++T DGT LSE Q RAIL+LRL RLT LG ++ +EL L +IKE Sbjct: 424 ILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKIKE 483 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL+SR R++ II EL VK++ PRRT+IV+ DM+DED I REDMVVTV+ G Sbjct: 484 YLAILASRERIMEIISTELREVKEQFSVPRRTQIVDWSGDMDDEDLIEREDMVVTVTQGG 543 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR L+ +RAQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRL Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 603 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+G ++GKA++NIL + QG I IMP E W++L V+FAT G+VRRN LSDF Sbjct: 604 PLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRNALSDFT 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R+GKIAM L E+++ C + +DI+L T G+ +RFP + +RVF GR S GVRG Sbjct: 664 NVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRKSTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---DTEEITSLKNDSSVEG 783 I L D+V+SM+++ H DA DER Y+K RR ++G D EE + G Sbjct: 724 IRLQGDDRVVSMSVIRHFDASADERAAYLK----MRRALAGAPDDGEE------PEAAAG 773 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +I+ +R +E++ E ILT+S +G GK +SS+D+ + R G G++A D K G LVA Sbjct: 774 DITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGDLVA 831 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 FPV +DQI+L + +G IRVPV+ I SR+ GV +F T K E VVSV I E Sbjct: 832 SFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVVSVAWIAE 887 >gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] Length = 940 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/898 (52%), Positives = 646/898 (71%), Gaps = 9/898 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V++ +EM SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G +K Y K A Sbjct: 22 LMPVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI+G+VMGKYHPHG+AAIYDAL R+AQ +SLR+ LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 82 RINGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++A FLL+D+ +DTVDF+PNYD S EP VL A YPN+LVNG GIAVGMAT IPTHN Sbjct: 142 ARSASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNP 201 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D +A+IDNPDI LD LM +I GPDFPTG +ILGR+GI++A+ TG+GSI +R + Sbjct: 202 TEVIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRARTD 261 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G R+ IV++EIPYQVNKA + E++AELVR K+I I+D+RDESDR G RVVIELK Sbjct: 262 FEEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK 321 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ DV+LN L+R+T LQ + +NM+AL+G +P L +L F+ FRE+V++RR ++ Sbjct: 322 RDATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRRARF 381 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+ +AR LM+R W A+D+ L+ LID Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + T+ L+EVQ R ILELRL RLTGL RD I NE+ + I E L+I+ S Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + ++++EL ++ EL++PRR+ I + L D +DE I MVVT++ G++KR PL V Sbjct: 502 RRMEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDV 561 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG+GR+ MR +D VT F TH VLFFSS G Y++KVWRLP P A+G Sbjct: 562 FRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKG 621 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +AL+N+L + IT ++P P+DES W L++VFAT G +RRN+LSDF + SG IA Sbjct: 622 RALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIA 681 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGD 733 MKLD D ++ V TC + +DI+L ++LG+C+RF + +RVFAGR S GVRG+ LA+GD Sbjct: 682 MKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGD 741 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS---LKNDSSV---EGNISE 787 +VIS++++ H +A +ER Y+++ SA+RR +G+ ++I + +DS V + +S Sbjct: 742 EVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSP 801 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ER L+ E+F+LTV+ GFGKR+S+YD+R+S R G+GI +++ N A+ A FPV Sbjct: 802 ERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNG-RAVAATFPV 860 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D ++LV+D G LIRVP +++RI R+T GV +F KDE V SV + E+E VD+ Sbjct: 861 RPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDD 918 >gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12] gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12] Length = 913 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/880 (55%), Positives = 628/880 (71%), Gaps = 6/880 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G K Y K AR Sbjct: 24 TISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSARP 83 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 84 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 143 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 144 PAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 203 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I+ PD++++ LM+ I PDFPTG ILGR G + AY GRGS++IR + IE Sbjct: 204 VIDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGRGGARKAYLEGRGSVIIRAKTRIE 263 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNK++M+EKIAELVREKRI IA ++DESDR G RVVIELKR Sbjct: 264 ELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELKRD 323 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F++FREEVV RRT Y L Sbjct: 324 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLKDFLSSFISFREEVVARRTAYDL 383 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DEVV IR S + AR +LM R W A+DI D I LIDD Sbjct: 384 RKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRLIDDP 443 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSE Q RAIL+LRL RLT +G ++ +EL L +I+E LDIL SRSR+ Sbjct: 444 THTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAAKIQEYLDILRSRSRI 503 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL VKD+ PRRT I + DMEDED I REDMVVTV+ GY+KR PL +R Sbjct: 504 MAIISDELREVKDQFAVPRRTEITDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLVEFR 563 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG +G+ +++D VT LF+ +THT +L F++ G VYK K WRLP G ARGKA Sbjct: 564 AQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMVYKLKTWRLPSGGRNARGKA 623 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L+N+L ++ G I IMP E W +L +VFAT G+VRRN LSDF + R+GKIAMK Sbjct: 624 LVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSAGDVRRNALSDFTNVMRNGKIAMK 683 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L ++ C++E+D++L T LG+ +RF + +RVF GR+S GVRG+ LA+GD+V+S Sbjct: 684 LPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVRVFKGRDSTGVRGVRLAEGDRVVS 743 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 MA++ H AD ER Y+K RR ++G +EE S D+ G +S ER E+ E Sbjct: 744 MAVIRHFVADPQERAAYLK----MRRAVAGLSEEAESEDEDTVEAGQLSPERYAEMSAAE 799 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++E G GK +SS+D+ + R G+G+ A D K G LVA FPV +DQI+L + Sbjct: 800 DLILTITEGGTGKISSSHDYPVRGRGGQGVTAMD--KAMRGGPLVACFPVEIDDQIMLAT 857 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G IR PV+ I SRA GV +F+TA E+VVSV I Sbjct: 858 STGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSVAYI 897 >gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040] gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040] Length = 912 Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/896 (54%), Positives = 639/896 (71%), Gaps = 12/896 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 25 TVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+L D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PD+ + L+E + GPDFPTG V+LGR+G + AY GRGS++IR + +E Sbjct: 205 VVDATLALIEDPDLTSEQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKA+M+EKIAE VREKRI +A ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT Y L Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYNL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R W A+DI I LIDD Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSEVQ RAILELRL RLT LG ++ +EL L +IKE L+ILSSR R+ Sbjct: 445 THTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 505 MSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP G ++GKA Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L ++FAT G VRRN+LSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTNVMRNGKIAMK 684 Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + ++ +++ C++++DI+L T G+ +RFP + +RVF RNSVGVRGI L + D+ Sbjct: 685 FEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGEDDE 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H+ ++R Y+K RR ++G T+E S D+ + N S E E+ Sbjct: 745 VVSMSVIRHSKYTPEQRSAYLK----MRRAMAGLTDEDAS-DEDAVEDPNFSTELFAEMS 799 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ G GK +SS+D+ + R G G+ A D K GALVA FPV +DQI+ Sbjct: 800 AAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGALVASFPVELDDQIM 857 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 L + KG IRVPV+ I SR+ GV IF+T K E VVSV I ++ D+ E+ E Sbjct: 858 LATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEVVSVAWIADNG--DDEETVE 911 >gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131] gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a)) [Rhodobacter sphaeroides KD131] Length = 920 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/901 (53%), Positives = 637/901 (70%), Gaps = 11/901 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 20 GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKS 79 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R Sbjct: 80 ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 139 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 140 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 199 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R + Sbjct: 200 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 259 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIEL Sbjct: 260 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 319 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 320 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLIHFLTFREDVVARRTA 379 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I LI Sbjct: 380 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 439 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL SR Sbjct: 440 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 499 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL+ Sbjct: 500 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 559 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A+ Sbjct: 560 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 619 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++NIL + G I +M E E W+ L VVFAT G+VRRN+LSDF + R+GKI Sbjct: 620 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 679 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL +++V C +++D+++ T LG+ +RFP + +RVF+GR+S GVRGI LA GD+ Sbjct: 680 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRVFSGRDSTGVRGIRLASGDR 739 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 V+SM+++ H +AD ER Y+K QRRL++G T E + D+ G +S R E+ Sbjct: 740 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 795 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A + S G LVA FPV +DQ+ Sbjct: 796 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 853 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + ++ V++AE Sbjct: 854 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTADGVEDAEPG 913 Query: 910 E 910 E Sbjct: 914 E 914 >gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1] gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides 2.4.1] Length = 907 Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/901 (53%), Positives = 636/901 (70%), Gaps = 11/901 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 7 GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R + Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIEL Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I LI Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL SR Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL+ Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A+ Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++NIL + G I +M E E W+ L VVFAT G+VRRN+LSDF + R+GKI Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD+ Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 V+SM+++ H +AD ER Y+K QRRL++G T E + D+ G +S R E+ Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A + S G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + +E V++AE Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900 Query: 910 E 910 E Sbjct: 901 E 901 >gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029] gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029] Length = 907 Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/901 (53%), Positives = 636/901 (70%), Gaps = 11/901 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 7 GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R + Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIEL Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I LI Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL SR Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL+ Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A+ Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++NIL + G I +M E E W+ L VVFAT G+VRRN+LSDF + R+GKI Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD+ Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793 V+SM+++ H +AD ER Y+K QRRL++G T E + D+ G +S R E+ Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A + S G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 +L + G IRVPV +I SR+ GV +F T E VVSV RI + +E V++AE Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900 Query: 910 E 910 E Sbjct: 901 E 901 >gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] Length = 906 Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/897 (53%), Positives = 641/897 (71%), Gaps = 13/897 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 1 MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 61 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+IDNPD+ + L++ + GPDFPTGA++LGR+G + AY GRGS++IR + +E+ Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRAKTRVEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNKA+M+EKIAE REKRI IA ++DESDR G RVV+ELKR A Sbjct: 241 IRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL G L AF+AFREEVV RRT Y L Sbjct: 301 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRGFLTAFIAFREEVVARRTAYDLR 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM+R W A DI + I LIDD + Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPT 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L IL+SR R++ Sbjct: 421 HRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIM 480 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL V+D+ PRRT I + DM+DED I RE+MVVTV+ GY+KR L+ +RA Sbjct: 481 EIIADELREVRDQFAVPRRTEITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTALADFRA 540 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G YK K WRLP G A+GKA+ Sbjct: 541 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTAKGKAI 600 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G + IMP E WN+L +VFAT G VRRN+LSDF + +GKIAMK Sbjct: 601 VNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNVKSNGKIAMKF 660 Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + + +++ C++E+D++L T G+ +RFP + +RVF RNSVGVRGI L+ D+V Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQEL 793 +SM+++ H +A +ER+ Y+K QRRL++G TE+ + +++++V G +S ER E+ Sbjct: 721 VSMSVIRHFEASSEERVAYLK----QRRLMAGLTEDEAASDDEDETAVAGQLSPERYAEM 776 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ KG GK +SS+D+ + R G G+ A S N G ++A FPV DQ+ Sbjct: 777 SAVENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAWTKSMSN--GPIIACFPVEMPDQV 834 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908 +L + KG IR+PV+ I SR+ GV +F+T K+E VVSV I R E DEA++ Sbjct: 835 MLATSKGQSIRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEAQT 891 >gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025] gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025] Length = 904 Score = 959 bits (2479), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/897 (53%), Positives = 637/897 (71%), Gaps = 9/897 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 7 GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKV 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIEL Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM R W A+DI D I LI Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLI 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD S+TI DGT LSE+Q RAIL+LRL RLT +G ++ +EL L +I++ LDIL SR Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSR 486 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ II EL VK PRRT I E D+EDED I REDMVVT++ GY+KR PL+ Sbjct: 487 ERIMAIISDELREVKALFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A+ Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++NIL + G I +M E E+ W+ L VVFAT G+VRRN+LSDF + R+GKI Sbjct: 607 GKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL +++V C + +D+++ T +G+ +RF + +RVF+GR+S GVRGI LA+GD+ Sbjct: 667 AMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGIRLAEGDR 726 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GNISEERCQEL 793 V+SM+++ H +AD ER Y+K QRRL++G TEE S +++ ++E G +S R E+ Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTEEAESDEDEDAIEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ T K G LVA FP+ +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGV--TSFEKSMRGGPLVACFPIEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +L + G IRVPV +I SR+ GV +F T +E VVSV RI ++ D AE E Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGGNEEVVSVARIADAG--DTAEVIE 895 >gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56] Length = 719 Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/677 (69%), Positives = 562/677 (83%), Gaps = 1/677 (0%) Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281 GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE GDREQI++TEIPYQVNKA M+ Sbjct: 1 GPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMI 60 Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341 EK+AELVREKRI I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F NM Sbjct: 61 EKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNM 120 Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401 VALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+ Sbjct: 121 VALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVI 180 Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461 R+IR +P+P++AR ELM R W A+D++ LI LIDD + I D T LSE Q RAILELR Sbjct: 181 RVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILELR 240 Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521 LARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K EL +V+DE TPRRT IV Sbjct: 241 LARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIV 300 Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581 +G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ RDEDFV+ LF Sbjct: 301 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLF 360 Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 +V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L GERITTI+P PEDE+ Sbjct: 361 VVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEA 420 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTT 700 +W+NL V+F+T G VRRNKLSDF+Q+NR+GKIAMKL+ DEILSVETCT+ +D+LLTT Sbjct: 421 NWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTERDDVLLTT 480 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 LGQC+RF + +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+ ER Y+K + Sbjct: 481 ALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAT 540 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 +RR D E+I + + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS Sbjct: 541 ERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRIS 600 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R GKGIRATD SK EIG LVA FPV+D DQI+LVSD G LIRVPV IRIASRATKGV Sbjct: 601 GRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGV 660 Query: 881 VIFSTAKDERVVSVERI 897 IFSTAKDE+VVSVERI Sbjct: 661 TIFSTAKDEKVVSVERI 677 >gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] Length = 905 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/886 (52%), Positives = 628/886 (70%), Gaps = 16/886 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G NK Y K A+ Sbjct: 23 ISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHENGYTHNKSYRKSAKSV 82 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD AA RYTE RL K Sbjct: 83 GDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDNAAAMRYTEARLDKP 142 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +LL D+ K+TV+F+ NYDG EP VL ARYPN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 143 SEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGEV 202 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+IDNP++ LME + PDFPTGAVILGR+G AY GRGS++IR + +E+ Sbjct: 203 IDATLALIDNPELTSSDLMEYVPAPDFPTGAVILGRSGAVKAYNEGRGSVIIRAKTRVEE 262 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 R I++ EIPYQVNKA+M+EKIAEL R+K+I I+ ++DESDR G RVV+ELKR A Sbjct: 263 IRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDESDRVGVRVVVELKRDA 322 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T LQ+ F NM+ALNG KPE+ TL L F++FREEVV RRT + LN Sbjct: 323 TAEVVLNQLFRFTPLQTSFGCNMLALNGGKPEQLTLYKFLSYFISFREEVVARRTAFELN 382 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DE+V IR S +P AR +LM R W A+DI I LIDD S Sbjct: 383 KARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRRWPAADISQYISLIDDPS 442 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +T+ D + LSE Q RAILELRL RLT +G ++ +EL L +I+ L+IL SR R++ Sbjct: 443 HTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELAGKIQNYLEILRSRDRIM 502 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL V ++ PRRT I+E DM+DED I +EDMVVT+++ GY+KR L+ +R Sbjct: 503 SIISDELKEVHEKFAVPRRTEIIEWAGDMDDEDLIEKEDMVVTITNSGYIKRTNLAEFRE 562 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG G+ +DEDFVT++F+ +THT++LFF++ G VYK K WRLP+G A+GKA+ Sbjct: 563 QKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDGMVYKLKTWRLPLGGRNAKGKAI 622 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL ++ G I +MP + W NL +VFAT G VRRN LSDF + +GKIAMKL Sbjct: 623 VNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAGGVRRNALSDFTNVKSNGKIAMKL 682 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 I++V T+ +D LLTT LG+ +RFP + +RVF GR+S GVRGI LA GD+V+SM Sbjct: 683 PEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRVFKGRDSTGVRGIKLAPGDKVVSM 742 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 A++ H +A DER Y K RR +L D + +IS+ER EL E Sbjct: 743 AVIRHVNASSDERTAYFK----MRR----------ALSEDETPNNDISQERYNELSELED 788 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +IL ++ GFGKR+S++++R+S R G+G+ A ++ + ++ +VA F V++ DQI+L + Sbjct: 789 WILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRDD--TVVAAFTVHEEDQIMLATS 846 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 G IR PV+ I + R++ GV +F+T E+VVSV I ++E D Sbjct: 847 TGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAYIADTEDSD 892 >gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45] gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45] Length = 915 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/891 (53%), Positives = 630/891 (70%), Gaps = 10/891 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G +K Y KCA Sbjct: 27 ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKSYRKCATAV 86 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL++ Sbjct: 87 GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 146 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL+D+ KDTVDF PNY EPVVL ARYPNVLVNG GIAVGMAT IP HNLGEV Sbjct: 147 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 206 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I+ PD+ + L+E I PDFPTG VILGR+G + AY GRGS++IR + IE+ Sbjct: 207 IDATLALIEQPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGRGSVIIRAKTRIEE 266 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNKA M+E+IAE VR+K+I IA ++DESDR G RVV+ELKR A Sbjct: 267 IKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQDESDRSGVRVVVELKRDA 326 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q F NM+ALNG +PE+ TL L AF+ FRE+VV RRT YLL Sbjct: 327 TAEVVLNQLFRFTPMQVSFGCNMLALNGGRPEQLTLRAFLTAFLDFREDVVARRTAYLLR 386 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AVAN+DEVV IR S + AR +LM R W A +I I LIDD + Sbjct: 387 KARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMTRRWPAHEIAPYIQLIDDPT 446 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L+IL SR R++ Sbjct: 447 HKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAKKIKEYLEILGSRERIM 506 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II E+++VK++ PRRT I + DM+DED I REDMVVTV+ GY+KR PL+ +RA Sbjct: 507 EIITNEMIAVKEQFAVPRRTEIADWAGDMDDEDLIEREDMVVTVTAGGYIKRTPLAEFRA 566 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG ++++D VT LF+ +THT +LFF++ G YK K WRLP G ++GKA+ Sbjct: 567 QKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFFTTEGMAYKLKCWRLPQGGRTSKGKAI 626 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + QG + IMP DE W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 627 VNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMKF 686 Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + DE +++ C++++DI+L T G+ +RFP+ +RVF RNS GVRG+ L GD+V Sbjct: 687 EGEDENTRLINARICSEDDDIMLVTDSGRAIRFPVPDVRVFNSRNSTGVRGVRLLNGDEV 746 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDSSVEGNISEERCQELK 794 +SM+++ H +A+ DER Y+K RR ++G ++ TS + + + + +S+ER E+ Sbjct: 747 VSMSVIRHFEAESDERASYLK----MRRAMAGLADDAETSDEEEGNADSRLSQERYAEMT 802 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ KG GK +SS+D+ I R G G+ A + S G +VA FPV DQI+ Sbjct: 803 AAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRG--GEIVASFPVEKGDQIM 860 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 L + G IRVPV+ I SR GV +F+T E VVSV I + DE Sbjct: 861 LATSTGQSIRVPVDGISFRSRGAGGVRVFNTRAGETVVSVAWIADQGDEDE 911 >gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] Length = 889 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/884 (53%), Positives = 626/884 (70%), Gaps = 10/884 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SITDEM+NSYL YA++VI+ RAIPDLRDGLKPVHRRILF M ++G +K Y K AR Sbjct: 1 MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 61 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A ++L D+ KDTVDF+ NYDG +EP VL R+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+IDNPD+ ++ L++ + GPDFPTG V+LGR+G + AY GRGS +IR +H+E+ Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLLGRSGARKAYTEGRGSCIIRAKTHVEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNK+AM+EKIAE VREK+I I+ ++DESDR G RVV+ELKR A Sbjct: 241 LRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LNQL+R+T +Q+ F NM+ALNG +PE TL G L F++FREEVV RRT YLL Sbjct: 301 TPDVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLYGFLSNFISFREEVVARRTAYLLR 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM R W A +I I LIDD + Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDDPT 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE Q RAILELRL RLT LG ++ +EL L +IKE L+IL SR R++ Sbjct: 421 HRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 480 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL VK+ PRRT IV+ DMEDED I R +MVVT++ GY+KR PL YRA Sbjct: 481 QIISDELREVKELFAVPRRTEIVDWSGDMEDEDLIERAEMVVTITQSGYIKRTPLEDYRA 540 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ +D+D VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA+ Sbjct: 541 QKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKAI 600 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP DE W +L +VFAT G VRRN LSDF + +GKIAMK Sbjct: 601 VNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNVKSNGKIAMKF 660 Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + +E +++ C E+D++L T+ G+ +RF +RVF R+SVGVRG+ L + D+V Sbjct: 661 EGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEV 720 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 SM ++ A+ DER Y+K RR ++GD E+ T + + + + + ++R E+ Sbjct: 721 ASMFVLPTFPAESDERASYLK----MRRAMAGDVEQTTD-EEEGNADMPLPQDRYAEMSA 775 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G G +SS+D+ + R G G+ A + K G ++A FPV +DQ++L Sbjct: 776 AETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE--KTMRTGEIIAAFPVEMDDQVML 833 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + KG IRVPV+ I SR+ GV +F+T K E VVSV RI E Sbjct: 834 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAE 877 >gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37] gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37] Length = 911 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/883 (54%), Positives = 638/883 (72%), Gaps = 10/883 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S+SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K Y K A+ Sbjct: 22 SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEVMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL K Sbjct: 82 VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +A LL D+ KDTVDF+ NYDG +EP VL AR+PNVLVNG GIAVGMAT IP HNLGE Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A++DNPD+ + LME ++GPDFPTG ++LGR+G + AY GRGS++IR + +E Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAATTVE 261 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV++ IPYQVNKA M+E+IAE R+K+I IA ++DESDR G RVV+ELKR Sbjct: 262 EIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKRD 321 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR+T +Q+ F NM+ALNG KPE+ TL G L AF+ FRE+V+ RRT YLL Sbjct: 322 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGKPEQLTLRGFLSAFLDFREDVIARRTAYLL 381 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DEVV IR S + AR+ LM+R W A DI I LIDD Sbjct: 382 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALIDDP 441 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IK+ L+ILSSR R+ Sbjct: 442 THKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRERI 501 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII++E+ ++++E PRRT IV+ DM+DED I REDMVVTV+ GY+KR L+ +R Sbjct: 502 MGIIREEMTAIREEFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTAGGYIKRTALADFR 561 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA Sbjct: 562 AQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKA 621 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 622 IVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 681 Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + DE +++ C++E+D++L T G+ +RFP+ +RVF RNS GVRGI L GD+ Sbjct: 682 FEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDE 741 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H +A+ DER Y+K RRL++G TE+ S D + + + +ER E+ Sbjct: 742 VVSMSVIRHFEAESDERASYLK----MRRLMAGVTEDEGS-DEDGNADAPLEQERYAEMS 796 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ +G GK +SS+D+ + R G+G+ A + S G +VA FPV DQI+ Sbjct: 797 AAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMRG--GDIVASFPVEQGDQIM 854 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L + G IRVPV+ I SR+ GV +F+T +E VVSV I Sbjct: 855 LATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWI 897 >gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] Length = 936 Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/899 (53%), Positives = 640/899 (71%), Gaps = 23/899 (2%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I+ +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G + Y Sbjct: 28 ENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVPGRPY 87 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A+I G+VMG YHPHG+++IYDALAR+AQDW++R+ LI+GQGNFGS+D DPPA+ RYT Sbjct: 88 RKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPASMRYT 147 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A LLDDL KDTV+F PNYDGS EP VL AR+PN+LVNG GGIAVGMATNIP Sbjct: 148 EARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMATNIP 207 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+ C A +DNP I +D LM I+ GPDFPTGA+ILG++G + AY TGRGSI++R Sbjct: 208 PHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALILGQSGARQAYHTGRGSIIMR 267 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +E++ GDR IV+TEIPYQV K+ ++EKIAE ++KRI I+D+RDES+RQG R+V Sbjct: 268 SRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQGVRIV 327 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ++LKR A+ DV+LNQL+R+T Q+ F NM+A+ G +PE L I+++FV FREEV+ R Sbjct: 328 MDLKRDATPDVVLNQLWRHTPAQTSFPANMLAIRGGRPETLNLRDIVESFVKFREEVITR 387 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R+K+ LNKAR+RAH+L+GL IAV NLDEVVRIIR S +P AR L+ R W +I+ I Sbjct: 388 RSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEIESYI 447 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+ ++ TIG T LSEVQ RAIL+LRL RLT LGRD+I +EL L I E L+IL Sbjct: 448 KLV-EAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAELLEIL 506 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +R RL ++ +E ++ E TPRRT I D++DED I REDMVVTV+H GY+KR Sbjct: 507 GNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTHGGYIKRT 566 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL +RAQRRGGKGRSG+ +DED VT+LF+ STHT VLFFS+ G VY++KVWRLP G+P Sbjct: 567 PLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVWRLPEGAP 626 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QARG+ +IN+L L GE+ITT++P PEDE SW+ L+VVFAT HGNVRRN + F + + Sbjct: 627 QARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFANVPTN 686 Query: 672 GKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 GK AM+ D+ D ++ V T+++D+LL T+ G+ +RF + +R F R S GVRGI L Sbjct: 687 GKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVRGILL 746 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VIS++I+ DA DER Y++ + D+ + +S ER Sbjct: 747 KGDDEVISLSILKGFDASTDERDAYLRAAPWK----------------DNEADPTLSAER 790 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E + E+FILTV G+GKR+S+Y++R + R G+GI ++ + G +VA FP ++ Sbjct: 791 MAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGI--GNIDNLERNGPVVASFPAHN 848 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +Q++LV+D+ LIR+ V + R+ R + GV +F+ + +E VV RI ES+ DEAE+ Sbjct: 849 GEQLMLVTDQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESD--DEAEA 905 >gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] Length = 889 Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/877 (54%), Positives = 626/877 (71%), Gaps = 10/877 (1%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G K Y K AR G+VMG+ Sbjct: 1 MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A FLL Sbjct: 61 YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVD++ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D +A Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I++PD+ + L++ + GPDFPTG ++LGR+G + AY GRGS+VIR + +E+ DR Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRW 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IV+ EIPYQVNKA+M+EKIAE VR+K+I I+ ++DESDR G RVV+ELKR A+A+V++ Sbjct: 241 AIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVVM 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT YLL KAR+R+ Sbjct: 301 NQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERS 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GLA+AV N+DEVV IR S + AR +LM R W A DI I LIDD ++T D Sbjct: 361 HILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSE Q RAILELRL RLT +G ++ +EL L +IKE L+IL SR R+LGII E Sbjct: 421 GTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L V++ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL +RAQRRGGK Sbjct: 481 LREVRELFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G+ A+GKA++NIL + Sbjct: 541 GVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILPI 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE- 683 G + IMP DE W++L VVFAT G VRRNKLSDF + +GKIAMK + E Sbjct: 601 PTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKIAMKFEGEHEG 660 Query: 684 --ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +++ + ++D++L T G+ +RFP + +R+F RNSVGVRGI L KGD ++SM+++ Sbjct: 661 TTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGKGDNLVSMSVI 720 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GNISEERCQELKLKEQFI 800 H +A +ER+ Y+K QRRL++G T++ ++ + V+ G +S ER E+ E I Sbjct: 721 RHFEATSEERVAYLK----QRRLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMSAAEDLI 776 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT++ KG GK +S++D+ + R G G+ A +K G +VA FPV +DQ++L + KG Sbjct: 777 LTITAKGAGKVSSAHDYPVRGRGGMGVTAW--TKAMAHGPIVACFPVEMSDQVMLATSKG 834 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IRVPV I SR+ GV +FST K+E VVSV I Sbjct: 835 QSIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWI 871 >gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] Length = 924 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/892 (53%), Positives = 630/892 (70%), Gaps = 8/892 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G K Y K AR Sbjct: 26 VSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARAV 85 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE+ Sbjct: 146 SASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEI 205 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I NPD+ + L++ + PDFPTG +ILGRTG + AY GRGS+VIR + +E+ Sbjct: 206 IDATLALITNPDLTSEELIQYVPAPDFPTGGIILGRTGARKAYIEGRGSVVIRAKTRVEE 265 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR IV+ EIPYQVNKA+++EKIAE VR+KRI I+ ++DESDR G RVV+ELKR A Sbjct: 266 IRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKRDA 325 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L +F+ FREEVV RRT + L Sbjct: 326 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFLDFREEVVARRTAFELR 385 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+HVL GLA+AV+N+DE+V IR S +P AR +LM R W A+DI + I LIDD + Sbjct: 386 KARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALIDDPT 445 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + DGT LSE Q RAILELRL RLT LG ++ +EL L I+E L+IL+SR R++ Sbjct: 446 HRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRERIM 505 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 GII EL VKD+ PRR+ I++ DMEDED I EDMVVTV+ GY+KR PL+ +RA Sbjct: 506 GIITDELQEVKDKFAVPRRSEIIDWSGDMEDEDLIESEDMVVTVTATGYIKRTPLADFRA 565 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG+ +++D VT+LF+ +THT +LFF++ G VYK K WRLP G A+GKA+ Sbjct: 566 QKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLPQGGRTAKGKAI 625 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 INIL + QG + +MP DE W +L +VFAT G+VRRN LSDF + R+GKIAMKL Sbjct: 626 INILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTNVMRNGKIAMKL 685 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 E+++ C++++D++L T G+ +RF + +RVF GR+S GVRGI LA+G V+SM Sbjct: 686 PEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGIRLAEGRSVVSM 745 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 A++ H +A ++R Y+K RR + G ++++ ++ + + E+ +E++ E Sbjct: 746 AVIRHFEASAEDRAAYLK----MRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAED 801 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILT+S G GK +SS+D+ + R G+G+ A D K G LVA FPV DQI+L + Sbjct: 802 LILTISNGGSGKLSSSHDYPVRGRGGQGVAAMD--KAMRGGPLVACFPVEIEDQIMLATS 859 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G IR P+ I SR+ GV +F TAK E VVSV I + DEAE E Sbjct: 860 TGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIADQG--DEAEDAE 909 >gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222] gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222] Length = 913 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/892 (53%), Positives = 629/892 (70%), Gaps = 9/892 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I EM++SYL YA++VI+ RAIPDLRDGLKPVHRR+LF M + G +K Y K AR Sbjct: 29 IDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTHDKPYRKSARPV 88 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+A+IYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 89 GDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSPAAMRYTEVRMDKP 148 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +LL D+ KDTV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 149 SAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 208 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+I++PD+ + L+EI+ GPDFPTG +ILGR+G + AY GRGSI++R + IE+ Sbjct: 209 VDATLALIEDPDLPTERLLEIVPGPDFPTGGIILGRSGARKAYLEGRGSIIVRAKTRIEE 268 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 T R+ I++ EIP+QVNKA+++EKIAEL +EKRI IA ++DESDR G RVVIELKR A Sbjct: 269 TRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQDESDRVGVRVVIELKRDA 328 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FREEVV RRT Y L Sbjct: 329 TAEVVLNQLFRFTPMQTSFGANMLALNGGRPEQLTLRDFLTHFLTFREEVVARRTAYELR 388 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+RAHVL GLA+AV+N+DEVV IR S + AR LM R W A +I + + LIDD Sbjct: 389 KARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMTRRWPAHEIVEYLKLIDDPL 448 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE Q RAILELRL RLT LG ++ +EL SL I+E L IL+SR R++ Sbjct: 449 HPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKSLAEAIREFLAILASRERIM 508 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 GII EL VK+ PRRT I + D++DED I REDMVVT++ GY+KR L+ +RA Sbjct: 509 GIISDELREVKNLFAVPRRTEITDWAGDLDDEDLIEREDMVVTITSGGYIKRTALAEFRA 568 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG SG+ +++D VT LF+ +THT +LFF++ G VY+ K WRLP+G A+GKA+ Sbjct: 569 QRRGGKGLSGMATKEDDVVTTLFVANTHTELLFFTTDGMVYRLKTWRLPLGGRTAKGKAI 628 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I +MP +S W+ V+F+T G+VRRN LSDF + R+GKIAMKL Sbjct: 629 VNILPIGSGVSIAALMPVDAPQSEWDGYQVIFSTSEGDVRRNALSDFANVMRNGKIAMKL 688 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 E++ T+ +D++L T G+ +RF + +RVF GR+S GVRGI LA GD+V+SM Sbjct: 689 PEGVELIGARMATESDDVMLFTAAGRAIRFQTTDVRVFKGRDSTGVRGIRLASGDRVVSM 748 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS--VEGNISEERCQELKLK 796 +I+ H +AD ER Y+K RR + G ++ D VE IS+ER E+ Sbjct: 749 SIIRHFEADAGERAAYLK----MRRAVEGALDDGAEADEDEDNVVEAAISQERYAEMSAA 804 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILT++ +G GK +SS+D+ + R G+G+ A D K G LVA FPV+ +DQI+L Sbjct: 805 EDLILTITARGAGKISSSHDYPVRGRGGQGVMAMD--KAMRGGPLVASFPVDRDDQIMLA 862 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + G IRVPV+ I SR+ GV +F+TA E VVSV RI E+ DEAE+ Sbjct: 863 TSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEEVVSVARIAENG-EDEAEA 913 >gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides] Length = 907 Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/898 (53%), Positives = 630/898 (70%), Gaps = 8/898 (0%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K Sbjct: 7 GLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R Sbjct: 67 ARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HN Sbjct: 127 MDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD +A+I+NPDI + LMEII GPDFPTG VILGR+G + AY GRGS+++R + Sbjct: 187 LGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ DR IV+ EIPYQVNKA M+EKIA++VREK+I IA ++DESDR G RVVIEL Sbjct: 247 RVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT Sbjct: 307 KRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRTA 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R+H+L GLA+AV+N+DEVV IR +P AR LM R ++DI D I LI Sbjct: 367 YELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLI 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DD S+TI DGT LSE+Q RAIL+LRL+ LT +G ++ +EL L +I++ LDIL SR Sbjct: 427 DDPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSR 486 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R++ II EL VKD PRRT I E D+EDED I REDMVVT++ GY+KR PL+ Sbjct: 487 ERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLA 546 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R+QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+G A+ Sbjct: 547 EFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTAK 606 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA++NIL + G I +M E W+ L VVFAT G+VRRN+LSDF + R+GKI Sbjct: 607 GKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGKI 666 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AMKL +++V C +++D+++ T LG+ +RF + +RVF+GR+S GVRGI LA GD+ Sbjct: 667 AMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGDR 726 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTE-EITSLKNDSSVEGNISEERCQEL 793 V+SM+++ H +AD ER Y+K QRRL++G T+ + D+ G +S R E+ Sbjct: 727 VVSMSVIRHFEADPAERAAYLK----QRRLMAGVTQEAEADEEEDAVEAGQLSPTRYAEM 782 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ +G GK +SS+D+ + R G+G+ A + S G LVA FPV +DQ+ Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTAFEKSMRG--GQLVASFPVEMSDQV 840 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAESTE 910 +L + G IRVPV +I SR+ GV +F T E VVSV RI ++ E D E E Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGETADGVEDAE 898 >gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035] gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035] Length = 899 Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/888 (54%), Positives = 625/888 (70%), Gaps = 7/888 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 15 SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ K+TV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+IDNPD++ + L++ I GPDFPTG ++LGR+G + AY GRGS++IR + E Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRTE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I++ EIPYQVNKA M+E+IAE R+KRI IA ++DESDR G RVVIELKR Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR+T +Q+ F NM+ALNG KPE+ TL L F+ FREEVV RRT Y L Sbjct: 315 ATAEVVLNQLYRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFITFREEVVARRTAYDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+RAHVL GLA+AV+N+DEVV IR S + AR++LM+R W A DI I LIDD Sbjct: 375 RKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 S+ +DGT LSEVQ RAIL+LRL RLT LG ++ +EL L +IKE L IL+SR R+ Sbjct: 435 SHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR L+ +R Sbjct: 495 MQIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ +DED VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP E W +L +VFAT G+VRRN LSDF + R+GKIAM Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C E+D++L T G+ +RFP + +RVF GR S GVRGI L D+V+S Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGDDRVVS 734 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+++ H DA D+R Y+K RR ++G ++ TS ++ + + +S E+ E++ E Sbjct: 735 MSVIRHFDASADDRAAYLK----MRRQLAGAEDDGTS-DDEGNADAALSAEQFAEMQAAE 789 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++ +G GK +SS+D+ + R G G++A D K G +VA FPV DQI+L + Sbjct: 790 NLILTITARGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 KG IRVPV I SR+ GV +F+T E VVSV I E DE Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGAGEEVVSVAWIAEQAEEDE 895 >gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 909 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/880 (53%), Positives = 621/880 (70%), Gaps = 6/880 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 25 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PD+ + L+E I GPDFPTG V+LGR+G + AY GRGS++IR + +E Sbjct: 205 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKA+M+EKIAE VREKRI ++ ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT Y L Sbjct: 325 ATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYDL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DEVV IR S + AR +LM R W A++I+ + LIDD Sbjct: 385 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPAAEIESYLRLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IKE LDILSSR R+ Sbjct: 445 LSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKEYLDILSSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL VK+ PRRT+IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 505 MGIIADELREVKENFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP +GKA Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W NL +VFAT G+VRRN LSDF + R+GKIAM Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNALSDFTNVKRNGKIAMD 684 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C++++D++L T G+ +RFP + +RVF GR S GVRGI L GD+V+S Sbjct: 685 LPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDVRVFKGRKSTGVRGIRLNDGDRVVS 744 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+++ H+ ++R Y+K RR ++G T++ ++ + N S E E+ E Sbjct: 745 MSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEPSDEEAVADPNFSTELYAEMSAVE 800 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++ G GK +SS+D+ + R G G+ A D K G LVA FPV +DQI+L + Sbjct: 801 NLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMD--KAMRGGPLVASFPVEMDDQIMLAT 858 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 KG IRVPV+ I SR+ GV +F+T K E VVSV RI Sbjct: 859 SKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVARI 898 >gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong] gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong] Length = 905 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/906 (51%), Positives = 654/906 (72%), Gaps = 8/906 (0%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S E +E I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G Sbjct: 1 MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +NK+Y K AR+ G+V+GKYHPHG A+YD+L RMAQD+SLRL L++GQGNFGS+DGD Sbjct: 61 HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG QEP VL A +PN+LVNG GGIAVG Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EVVD C A IDN +I + LME+++GPDFPTG I+G GIK+AY TGR Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I++RG + IE S + I++TEIP+ VNKA+++EKIAELV +KRI I+ +RDES++ Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+ P+ TL I+ AF FR Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+ LM R WN S Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D+ DL+ L+DD + + DG +L+E QT++ILELRL RLT R + +ELN+L EIK Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L+IL SR +LL +K EL +K++ T R T I + + ED I E++VVTV+ Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPLS YRAQ+RGGKGR G +++ED +T LFI +THTS+LFFS++G VY KV++ Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+ Y++FATKHGN+RRN LSD Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +GKIA++LD D ++SV++C +EN +LL T+ G+ +RFP+ +RVF R S GV Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + I LA D VISM I+ + + R Y+ + R LI+ + S+ D S + N Sbjct: 719 KAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSI--DLS-KYN 775 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++E+ + E+FILTVSE G+GK +S+Y++R++ R GKG+ +VS ++ G +V+V Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVS--SKTGKVVSV 833 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 P +++++L++ G LIR +N +RI R+T GV++F T+KDE+VVS++ I++++ D Sbjct: 834 LPACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893 Query: 905 EAESTE 910 + E Sbjct: 894 DCSDDE 899 >gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11] gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11] Length = 913 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/895 (54%), Positives = 638/895 (71%), Gaps = 9/895 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G +K Y K AR Sbjct: 25 TVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PD+ + L+E I GPDFPTG V+LGR+G + AY GRGS++IR + +E Sbjct: 205 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTKVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKAAM+EKIAE VREKRI +A ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT Y L Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLSSFIDFREDVVARRTAYDL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R W ASDI I LIDD Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPASDIAPYIRLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSEVQ RAILELRL RLT +G ++ +EL L +IKE L+ILSSR R+ Sbjct: 445 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 LGII EL V+D PRRT IV+ DMEDED I REDMVVT++ GY+KR PL+ +R Sbjct: 505 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G ++GKA Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W L V+FAT G+VRRN+LSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATSAGDVRRNRLSDFTNVRRNGKIAMK 684 Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L D ++++ C++++D++L T G+ +RF + +RVF R S GVRGI L D V Sbjct: 685 LPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFRTTDVRVFNSRESTGVRGIRLNGDDHV 744 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H +A +ER Y+K RR ++G ++ S ++ V G IS++R E+ Sbjct: 745 VSMSVIRHFEASPEERAAYLK----MRRAVAGIADDGES-DDEDVVAGAISQDRYAEMSA 799 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G GK +SS+D+ + R G G+ A D K GA+VA FPV +DQI+L Sbjct: 800 AENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGAIVASFPVEMDDQIML 857 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + KG IRVP++ I SR+ GV +F+T K E VVSV I E DEA+++E Sbjct: 858 ATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAEQSDEDEADTSE 912 >gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] Length = 914 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/883 (53%), Positives = 621/883 (70%), Gaps = 9/883 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I E++ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+ +K Y K A+ Sbjct: 25 SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE RL K Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +L DDL KDTVDF NYDG +EP VL ARYPN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+ID+PD+ ++ ++E I PDFPTG +ILGRTG + AY GRGS+++R +++E Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIILGRTGARKAYIEGRGSVIVRAKTNVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNKA M++KIAE REK+I IA ++DESDR G RVVIELKR Sbjct: 265 EIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ TL L F+ FRE+VV RRT + L Sbjct: 325 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLRAFLAYFIDFREDVVARRTAFEL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+RAHVL GLA+AV N+DE+V IR S + TAR +LM R W A DI + I LIDD Sbjct: 385 RKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +I+E L+IL SR R+ Sbjct: 445 THTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II+ EL V+D PRRT IV+ DMEDED I +EDMVVTV+ GY+KR L+ +R Sbjct: 505 MQIIRDELTEVRDLFAVPRRTEIVDWSGDMEDEDLIEKEDMVVTVTSGGYIKRTALADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG S + ++ED VT LF+ +THT +LFF++ G VYK K WRLP+GS A+GKA Sbjct: 565 AQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGSRTAKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP E W++L VVFAT G VRRNKLSDF + R+GKIAMK Sbjct: 625 IVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684 Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + + +++ + ++D++L T G+ +RFP + +RVF R+SVGVRGI L D+ Sbjct: 685 FEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPATDVRVFNSRSSVGVRGIKLQGDDK 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+I+ H A+ +ER Y+K RR ++G ++ + + +V G IS+ER E+ Sbjct: 745 VVSMSIIRHFKAEAEERAAYLK----MRRAMAGLADDAETDDEEEAVAGAISQERYAEMS 800 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ +G GK +SS+D+ + R G G+ A D K GALV FPV +DQI+ Sbjct: 801 AAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAMD--KAMRGGALVTSFPVEISDQIM 858 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV+ G IRVP+ I SR GV +F T K E VVSV I Sbjct: 859 LVTSTGQSIRVPIEGISFRSRGAGGVKVFDTGKGETVVSVAWI 901 >gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] Length = 918 Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/883 (54%), Positives = 618/883 (69%), Gaps = 9/883 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+ K Y K A+ Sbjct: 25 SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD AA RYTE RL K Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+ DL K+TVDF NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D C A+I+NPD+ + L+E I GPDFPTG ++LGR+G + AY GRGS+++R + +E Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLGRSGARKAYLEGRGSVIMRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EI YQVNK+ M+EKIAE VREK+I IA ++DESDR G RVVIELKR Sbjct: 265 EIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V++NQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT YLL Sbjct: 325 ATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLTSFIDFREDVVARRTAYLL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV N+DEVV IR S + AR +LM R W A I I LIDD Sbjct: 385 RKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +IKE L+IL SR R+ Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL VKD+ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL +R Sbjct: 505 MGIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP G ++GKA Sbjct: 565 SQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L VVFAT G VRRNKLSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684 Query: 678 L--DSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 D D L + + ++D++L T G+ +RFP + +RVF R SVGVRGI L D+ Sbjct: 685 FEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDE 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+I+ H DA +ER Y+K RR ++G ++ ++++ + N S+ER E+ Sbjct: 745 VVSMSIIRHFDASSEERTAYLK----MRRAMAGLADDAEGDEDEAPADPNFSQERYAEMS 800 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E +LT++EKG GK +SS+D+ + R G G+ A D K G +VA FPV +DQI+ Sbjct: 801 AAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVASFPVEMDDQIM 858 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L + KG IRVPV I SR+ GV +F T + E VVSV I Sbjct: 859 LATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEVVVSVAWI 901 >gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217] gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217] Length = 899 Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/893 (54%), Positives = 628/893 (70%), Gaps = 9/893 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 15 SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ KDTV+F+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I+NPD++ + L++ I GPDFPTG ++LGR+G + AY GRGS++IR + +E Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRVE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I++ EIPYQVNKA M+E+IAE REKRI I+ ++DESDR G RVVIELKR Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ TL L F+ FREEVV RRT + L Sbjct: 315 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFIVFREEVVARRTAFEL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +AR+RAHVL GLA+AV+N+DEVV IR S + AR +LM+R W A +I I LIDD Sbjct: 375 RRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 S+ DGT LSEVQ RAIL+LRL RLT LG ++ +EL L +IKE L IL+SR R+ Sbjct: 435 SHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL V+D PRRT+IV+ DMEDED I REDMVVTV+ GY+KR L+ +R Sbjct: 495 MQIISDELREVRDLFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ +DED VT LF+ +THT +LFF++ G VYK K WRLP+G ++GKA Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP E W +L +VFAT G+VRRN LSDF + R+GKIAM Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C E+D++L T G+ +RFP + +RVF GR S GVRGI L D+V+S Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGNDRVVS 734 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+++ H DA DER Y+K +R+L D + + ++ + IS ER +E++L E Sbjct: 735 MSVISHFDASADERAAYLK---MRRQLAGADEDAAADDEGNA--DAAISPERFEEMQLAE 789 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++ KG GK +SS+D+ + R G G++A D K G +VA FPV DQI+L + Sbjct: 790 NLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 KG IRVPV I SR+ GV +F+T E VVSV I +E DE E+ E Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGTGEEVVSVAWI--AEQADEDETAE 898 >gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1] gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1] Length = 919 Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/904 (53%), Positives = 631/904 (69%), Gaps = 15/904 (1%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E S+ I+ EM+ S+L YA++VI+ RAIPDLRDGLKPVHRRILF M + G K Sbjct: 17 ERPEYSGPSIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAMHETGNTHEK 76 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA R Sbjct: 77 SYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMR 136 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ A +LL+D+ KDTVDF+ NYDG QEP VL AR+PN+LVNG GGIAVGMATN Sbjct: 137 YTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAGGIAVGMATN 196 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C A+I+ PD+ + L+E + PDFPTG +ILGR+G + AY GRGS++ Sbjct: 197 IPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIILGRSGAQKAYIEGRGSVI 256 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + E+ DR IV+ EIPYQVNKA+M+E+IAELVR+K+I I+ + DESDR G R Sbjct: 257 IRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGVADESDRIGVR 316 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELKR A+ +V+LNQL+R+T +Q+ F NM+ALNG KPE+ TL G L +F+ FREEVV Sbjct: 317 VVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALNGGKPEQLTLRGFLTSFLDFREEVV 376 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAHVL GLA+AV+N+DEVV IR S + AR LM R+W A +I Sbjct: 377 ARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALMTRAWPAEEILP 436 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 I LIDD ++ DGT LSE Q RAILELRL RLT LG ++ +EL L +IK+ L Sbjct: 437 FIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKDYLA 496 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+SR R+L II EL V+ + RRT IVE DM+DED I R DMVVT++ GY+K Sbjct: 497 ILASRERILEIISNELAEVRAKFAVDRRTEIVEWSGDMDDEDLIERSDMVVTITQGGYIK 556 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PL+ +RAQ+RGGKG +G M+D+D VT +F+ +THT +LFF++ G VYK K WRLP G Sbjct: 557 RTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFTTGGMVYKLKTWRLPSG 616 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S +RGKA++NIL + G I IMP DE W+ L VVF T G VRRN LSDF + Sbjct: 617 SRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTDRGTVRRNALSDFANVM 676 Query: 670 RSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R+GKIAMK + E +++ + ++D++L TK G+ +RFP + +RVF R S GVRG Sbjct: 677 RNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPATDVRVFNSRASTGVRG 736 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L K D+V+SM+I+ H DA+ ER Y+K QRRL++G TEE + ++D EG++S Sbjct: 737 IKLGKDDEVVSMSIIRHFDAEASERAAYLK----QRRLMAGVTEEAETDEDDVP-EGDLS 791 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ER E+ E ILT++ G GK +SS+D+ + R G+G+ A D K G L+A FP Sbjct: 792 PERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAID--KAMRGGTLIASFP 849 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESE 901 V +DQI+L + G IRVP++ I SR+ GV +F+TAK E +VSV I +++ Sbjct: 850 VEMDDQIMLATSTGQSIRVPIDGISFRSRSAGGVKVFNTAKGEDIVSVAYIADQGDEDAD 909 Query: 902 IVDE 905 ++DE Sbjct: 910 VIDE 913 >gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] Length = 901 Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/891 (52%), Positives = 625/891 (70%), Gaps = 21/891 (2%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E G++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G + Sbjct: 2 QPSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A+I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ R Sbjct: 62 PYKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL+DL KDTVDF+PNYD S +EP VL AR+PN+LVNG GGIAVGMATN Sbjct: 122 YTEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D +A+IDNP I L+ LM I+ GPDFPTGA++LG+ G ++AYATGRGSI+ Sbjct: 182 IPPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMMLGQGGARSAYATGRGSIM 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ DR+ IV+T IP+QV K+ ++EKIAE R+KRI +AD+RDES+R+G R Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+A+V+LNQL+R+T QS F NM+A+ G +PE L IL AF+ FREEV+ Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPANMLAIRGGRPEMMGLKDILSAFIIFREEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L KARDRAH+L+GL +AV+NLDEVVRIIR S +P AR L+ R W DI Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 I L++ + T LSEVQ +AIL+LRL RLT LGRD+I EL L EI+E L Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R +L G++++EL++V+DE TPRRT + ++DED I RE+MVVTV+ GY+K Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PL+ +RAQRRGGKGR+G+ +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G Sbjct: 542 RTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPEG 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 P RG+ +IN+L L QGE I+T++P PEDES W L+V+FAT G+VRRN + F + Sbjct: 602 GPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNVP 661 Query: 670 RSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +GKIAMK + DE ++ V + +D+LL T+ G+ +RF +R F RNS GVRG Sbjct: 662 SNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRG 721 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + LA+GD+VIS++I+ DER Y++ + D+ E + Sbjct: 722 MRLAEGDEVISLSILHRVGTTGDEREAYLR----------------AAPWKDNENEPTLP 765 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ER EL +EQFILTV G+GK +S+Y++R + R G+GI T++ I G +VA FP Sbjct: 766 AERMAELAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARNGPVVASFP 823 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 Q++LV+D+ LIR+ ++ +RI R + GV +F A+ E VVS I Sbjct: 824 ATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFDVAEGEHVVSAALI 874 >gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] Length = 918 Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/882 (53%), Positives = 629/882 (71%), Gaps = 10/882 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 26 ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKPYRKSARAV 85 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 86 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A ++L D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D C+ +I+NPD+ + L+E I GPDFPTG ++LGRTG + AY GRGS++ R +H E+ Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRTGARKAYLEGRGSVITRAKTHTEE 265 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I++TEIPYQVNK+ M+++IAE R+K+I I+ ++DESDR G RVVIELKR A Sbjct: 266 IRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKRDA 325 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE TL L +F+ FRE+VV+RRT + LN Sbjct: 326 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFREDVVIRRTAFELN 385 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDRAHVL GLA+AV+N+DEVV IR S + +AR LM R+W A++I I LIDD + Sbjct: 386 KARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAAEILPFILLIDDPT 445 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + +DGT LSE+Q RAILELRL RLT +G ++ +EL L +IKE L IL+SR R++ Sbjct: 446 HPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLAILASRERIM 505 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL K PRRT+IV+ DMEDED I +DMVVTV+ GY+KR L +RA Sbjct: 506 QIITDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTETGYIKRTALVDFRA 565 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WRLP GS ++GKA+ Sbjct: 566 QKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAI 625 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP DE W++L +VFAT G VRRNKLSDF ++ R+GKIAMK Sbjct: 626 VNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNKLSDFTKVMRNGKIAMKF 685 Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + +E +++ C+ ++D++L T G+ +RF + +RVF R S+GVRGI L D++ Sbjct: 686 EGENEGVQLINARICSDDDDVMLVTNSGRAIRFASTDVRVFNSRASLGVRGIRLKGDDKI 745 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H +A+ DER Y+K RR ++G ++ ++++ GNI++ER E+ Sbjct: 746 VSMSVIRHFEAESDERAAYLK----MRRAMAGLADD-AEIEDEDVTAGNITQERYAEMSA 800 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G GK +SS+D+ + R G G+ A D K G +VA FPV +DQI+L Sbjct: 801 SENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVASFPVEMDDQIML 858 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + KG IRVPV I SR+ GV +F+T K+E VVSV I Sbjct: 859 ATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYI 900 >gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601] gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601] Length = 905 Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/910 (53%), Positives = 639/910 (70%), Gaps = 11/910 (1%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S E G ++SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G Sbjct: 1 MSGPERPSYGGPAISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQ 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y KCA G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPP Sbjct: 61 TKSKPYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL++ A LL+D+ KDTVDF PNY EPVVL ARYPNVLVNG GIAVG Sbjct: 121 AAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MAT IP HNLGEV+D +A+I+NPD+ + L+E I PDFPTG VILGR+G + AY GR Sbjct: 181 MATRIPPHNLGEVIDATLALIENPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS++IR + IE+ DR IV+ EIPYQVNKA M+E+IAE VR+K+I IA ++DESDR Sbjct: 241 GSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDR 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELKR A+A+V+LNQLYR+T +Q F NM+ALNG KPE+ TL L AF+ FR Sbjct: 301 SGVRVVIELKRDATAEVVLNQLYRFTPMQVSFGCNMLALNGGKPEQLTLRTFLTAFLDFR 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV IR S + AR +LM R W A Sbjct: 361 EDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAH 420 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +I I LIDD ++ + DGT LSE Q RAILELRL RLT LG ++ +EL L +IK Sbjct: 421 EIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIK 480 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L+IL SR R++ II E+ +V+D+ PRRT IV+ DM+DED I REDMVVTV+ Sbjct: 481 EYLEILGSRERIMEIISNEMTAVRDQFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTQS 540 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR PL+ YR+Q+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WR Sbjct: 541 GYIKRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWR 600 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP G ++GKA++NIL + QG + IMP E W++L +VFAT G+VRRN+LSDF Sbjct: 601 LPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDF 660 Query: 666 IQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + R+GKIAMK + DE +++ C++++D++L T G+ +RFP+ +RVF RNS Sbjct: 661 TNVMRNGKIAMKFEGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNST 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSS 780 GVRG+ LA GD+V+SM+++ H +A+ DER Y+K RR ++G D E S ++ + Sbjct: 721 GVRGVKLANGDEVVSMSVIRHFEAESDERASYLK----MRRAMAGLADDAEAASDDDEGN 776 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + +S ER E+ E +LT++ KG GK +SS+D+ I R G G+ A + S G Sbjct: 777 ADSLLSAERYAEMSAAENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMRG--GE 834 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA FPV DQI+L + G IRVPV I SR+ GV +F+T + E VVSV I + Sbjct: 835 IVASFPVEMEDQIMLATSTGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQ 894 Query: 901 EIVDEAESTE 910 DE E+ E Sbjct: 895 GDEDEGEAGE 904 >gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] Length = 905 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/907 (51%), Positives = 650/907 (71%), Gaps = 10/907 (1%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S E +E I +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G Sbjct: 1 MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +NK+Y K AR+ G+V+GKYHPHG A+YD+L RMAQD+SLRL L++GQGNFGS+DGD Sbjct: 61 HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG QEP VL A +PN+LVNG GGIAVG Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNL EVVD C A IDN DI + LME+++GPDFPTG I+G GIK+AY TGR Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I++RG + IE S + I++TEIP+ VNKA+++EKIAELV +K+I I+ +RDES++ Sbjct: 241 GKIIVRGKTDIESDSL-KHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNK 299 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+ P+ TL I+ AF FR Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+ LM R WN S Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D+ DL+ L+DD + + DG +L+E QT++ILELRL RLT R + +ELN+L EIK Sbjct: 420 DVYDLVKLVDDRA-ILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L+IL SR +LL +K EL +K++ T R T I + + ED I E++VVTV+ Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KRVPLS YRAQ+RGGKGR G +++ED +T LFI +THTS+LFFS++G VY KV++ Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664 LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+ Y++FATKHGN+RRN LSD Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I +GKIA++LD D ++SV++C + N +LL T+ G+ +RFP+ +RVF R S GV Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-NDSSVEG 783 + I LA D VISM I+ + + R Y+ R LI+ + SL+ N + Sbjct: 719 KAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIAKN----KSLQPNIDLSKY 774 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N++E+ + E+FILTVSE G+GK +S+Y++R++ R GKGI +VS + G +V+ Sbjct: 775 NLTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSP--KTGKVVS 832 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V +++++L++ G LIR +N +RI R+T GV++F T+KDE+VVS++ I++++ Sbjct: 833 VLSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYS 892 Query: 904 DEAESTE 910 D+ E Sbjct: 893 DDCSDDE 899 >gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3] gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3] Length = 891 Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/882 (53%), Positives = 628/882 (71%), Gaps = 7/882 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 4 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARP 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 64 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A FLL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 124 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+ID+PD+ + L++ + GPDFPTG V+LGR+G + AY GRGS++IR + +E Sbjct: 184 VVDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 243 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I+V EIPYQVNKA M+EKIAE VREKRI +A ++DESDR G RVV+ELKR Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 303 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L F+ FREEVV RRT + L Sbjct: 304 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHDL 363 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV+N+DEVV IR S + AR +LM R W A+DI + LIDD Sbjct: 364 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDDP 423 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + DGT L+EVQ RAIL+LRL RLT LG ++ +EL L +IKE L+IL SR R+ Sbjct: 424 LSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERI 483 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V+++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 484 MGIIADELREVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 543 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP +GKA Sbjct: 544 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 603 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W+ L +VFAT G+VRRN LSDF + R+GKIAMK Sbjct: 604 IVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMK 663 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C++E+D++L T G+ +RFP + +RVF GR+S GVRGI L GD+V+S Sbjct: 664 LPEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVS 723 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--ISEERCQELKL 795 M+++ H +A+ ER ++K R ++ + E+ + ++ +VEG +++ER QE++ Sbjct: 724 MSVIRHFEAEPWERAEFIKRF---RTILGAEMEDDAAETDEDAVEGEGVLTDERYQEMQD 780 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + ILT++ G GK +SS+D+ + R G+G++A +S G L A FPV +DQI+L Sbjct: 781 AQDLILTITVTGLGKLSSSHDYPVRGRGGQGVKA--ISAGPRGGTLAASFPVLMDDQIML 838 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + G IRVPV I SR+ GV +F+T+K E VVSV RI Sbjct: 839 ATSGGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARI 880 >gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] Length = 903 Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/895 (54%), Positives = 636/895 (71%), Gaps = 10/895 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S+SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G NK Y KC Sbjct: 12 SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG+YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL+K Sbjct: 72 VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +A LL D+ KDTVDF PNY EP VL ARYPN+LVNG GIAVGMAT IP HNLGE Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+IDNPD+ + L++ I PDFPTG +ILGR+G + AY GRGS+VIR + E Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLILGRSGARKAYTEGRGSVVIRCKTRTE 251 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNKA M+E+IAE REKRI IA ++DESDR G RVVIELKR Sbjct: 252 EIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQL+R+T +Q F+ NM+ALNG KPE TL G L AF+ FRE+VV +RT + L Sbjct: 312 ATPEVVLNQLFRFTPMQVSFACNMLALNGGKPETLTLRGFLTAFLDFREDVVAKRTAFEL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NKAR+R+H+L GLA+AV+N+DEVV IR S + AR++LM+R W A +I I LIDD Sbjct: 372 NKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLIDDP 431 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ + DGT LS+ Q RAIL+LRL RLT LG ++ +EL +L +I+E LDIL SR R+ Sbjct: 432 THKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRERI 491 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L I+ EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR L+ +R Sbjct: 492 LSIVSDELREVRERHAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTQGGYIKRTALADFR 551 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +Q+RGGKG SG +++ED VT LF+ +THT +LFF++ G VYK K WRLP+G +RGKA Sbjct: 552 SQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSRGKA 611 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 612 IVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTNVMRNGKIAMK 671 Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L D +++ C++++D++L T G+ +RFP++ +RVF+GR+S GVRGI L GD+V Sbjct: 672 LPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVRGIRLQNGDKV 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SMA++ H +A +ER+ Y+K RR G T+E S D G + +R E+ Sbjct: 732 VSMAVIRHFEASPEERVAYLK----MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSA 787 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E +LT++ KG GK +SS+ + + R G+G+ ATD K G +V+VFPV +DQI+L Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSATD--KAMRGGPIVSVFPVELDDQIML 845 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 V+++G IRVPV+ I SR+ GV +F+TAK E VVSV I +E DE E E Sbjct: 846 VTNQGQSIRVPVDGISFRSRSAGGVRVFNTAKGEEVVSVAWI--AEQADEDEPGE 898 >gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] Length = 907 Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/880 (54%), Positives = 625/880 (71%), Gaps = 7/880 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 25 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+ID+PD+ + L+E + GPDFPTG V+LGR+G + AY GRGS++IR + E Sbjct: 205 VVDATLALIDDPDLTSEQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRTE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKA+M+EKIAE VREKRI +A ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT Y L Sbjct: 325 ATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYDL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R W AS+I+ + LIDD Sbjct: 385 RKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + DGT L+EVQ RAIL+LRL RLT +G ++ +EL L +IKE LDILSSR R+ Sbjct: 445 LSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL SV+++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 505 MSIIGDELRSVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP S +GKA Sbjct: 565 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W NL +VFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNVRRNGKIAMK 684 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L E+++ C+++ D++L T G+ +RF + +RVF R S GVRGI L GD V+S Sbjct: 685 LPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIKLTNGDHVVS 744 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+++ H +AD DER Y+K RR ++G ++ D + G+IS+ER ++ E Sbjct: 745 MSVIRHFEADPDERAAYLK----MRRAVAGIADD-GETDEDEATPGSISQERYAQMSAAE 799 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++ G GK +SS+D+ + R G G+ A D + G LVA FPV+ +DQI+L + Sbjct: 800 NLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMD--RAMRGGELVASFPVDLDDQIMLAT 857 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 KG IRVPV+ I SR+ GV +F+T K E VVSV I Sbjct: 858 SKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVSVAWI 897 >gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17] gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17] Length = 916 Score = 939 bits (2428), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/892 (52%), Positives = 626/892 (70%), Gaps = 20/892 (2%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I+++SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G K Y Sbjct: 9 EPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAESGFVAGKPY 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG++AIYDALARMAQDWS+R+ LI+GQGNFGS+D DPPAA RYT Sbjct: 69 RKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPDPPAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A+ LLDDL KDTVDF+PNYDGS +EP VL A+YPN+LVNG GGIAVGMATNIP Sbjct: 129 EARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVV+ C+A ++N I ++ L EI+ PDFPTGA+ILGR+G ++AY TGRGSI++R Sbjct: 189 PHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALILGRSGARSAYQTGRGSIIVR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE+ GDR IV+TEIPYQ K A++EKIAE +EKRI I+D+RDES+R+G R+V Sbjct: 249 SRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDESNREGVRIV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I+LKR A+ +V+LNQL+R+T Q+ F NM+A+ G +PE L I++AFV FRE+V+ R Sbjct: 309 IDLKRDATPEVVLNQLWRHTPAQTSFPANMLAIRGGRPELLNLRDIIQAFVQFREQVITR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R+K+ L KAR+RAH+L+GL IAV NLDEVVRIIR S +P AR L+ R W ++I I Sbjct: 369 RSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAREWPIAEIAPYI 428 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+ ++ + G T LSE Q RAIL+LRL RLT LGRD+I +EL L I E L+IL Sbjct: 429 RLV-EAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLADSITELLEIL 487 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++R +L +++ EL++++D+ TPRR+ I ++DED I REDMVVTV+ GY+KR Sbjct: 488 ANRVKLYEVMRGELVAIRDQFATPRRSEIAAAADGIDDEDLIEREDMVVTVTMQGYIKRT 547 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL +RAQ RGGKGRSG+ +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G P Sbjct: 548 PLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSNHGKVYRYKVWRLPEGGP 607 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG+ ++N+L L GE I+T++P PEDE+ W L+V+FAT G VRRN + F + + Sbjct: 608 ATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAKGAVRRNSMDAFTNVPSN 667 Query: 672 GKIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 GKIAM+ D S D ++ V E+D+LL T+ G+ +RF +R F R S GVRGI+L Sbjct: 668 GKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQSRTSTGVRGIAL 727 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VIS++++ +ER Y++ K + E +S ER Sbjct: 728 KGEDEVISLSVLHRVGTTQEEREAYLR---------------FAPWKGEKEGEPELSVER 772 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +EL+ EQFILTV G+GK +S+Y++R + R G+GI T++ I G +VA FP + Sbjct: 773 YEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIARNGDVVASFPASK 830 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 Q++LV+D+ LIR+ + +R+ R + G+ +F+ A E VVS RI E+E Sbjct: 831 GHQLMLVTDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIEETE 882 Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 96/239 (40%), Gaps = 44/239 (18%) Query: 525 LDMEDEDCIV------REDMVVTVSHLGYVKRVPLSVYRA-QRRGGKGRSGVVMRDEDFV 577 D E ED ++ ED V+ + G R R Q R G G+ ++ ED V Sbjct: 674 FDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQSRTSTGVRGIALKGEDEV 733 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN---QGERITTIM 634 L ++ +G+ Q +A + +GE ++ Sbjct: 734 ISLSVLHR----------------------VGTTQEEREAYLRFAPWKGEKEGEPELSVE 771 Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD------EILSVE 688 + E S + V A +G KLS + R+G+ + + D ++++ Sbjct: 772 RYEELRESEQFILTVCANGYG-----KLSSAYEYRRTGRGGQGITNIDNIARNGDVVASF 826 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++ + ++L T + +R ++++RV GR S G+R ++A G+ V+S A + + D Sbjct: 827 PASKGHQLMLVTDQAKLIRMSLASLRVI-GRGSAGLRLFNVAPGEHVVSAARIEETEED 884 >gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] Length = 906 Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/885 (51%), Positives = 637/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + +V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S NP A++ELM RSW+A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL EE N + ++ + E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYLT-VPWEKRLEIAKGEEF----NLEELGVTLTADSILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003] gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003] Length = 913 Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/895 (52%), Positives = 629/895 (70%), Gaps = 11/895 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI +EM+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G +K Y K AR Sbjct: 25 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPV 84 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 85 GDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKP 144 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 145 AAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 204 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I+NPD+ +ALM+ + GPDFPTGA I+GR G + AY GRGS++IR + IE+ Sbjct: 205 IDATLALIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEE 264 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I++ EIPYQVNKA M+EK+A+LVREK++ IA + DESDR G RVVIELKR A Sbjct: 265 IRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDA 324 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +ADV+LNQLYR+T LQ+ F NM+ALNG +PE+ TL L F+AFREEVV RRT Y L Sbjct: 325 TADVVLNQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELR 384 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV+N+DEVV IR S +P AR LM+R W A +I + + LIDD Sbjct: 385 KARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPL 444 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSEVQ RAIL+LRL RLT +G ++ +EL L +I++ L IL+SR R++ Sbjct: 445 HPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIM 504 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL V+ PRRT IV+ D++DED I REDMVVT++ GY+KR PL+ +RA Sbjct: 505 AIIATELREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRA 564 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG + + +++D VT LF+ +THT +LFF++ G VY K WRLP+ ++GKA+ Sbjct: 565 QRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAI 624 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + QG + ++MP E E +W++ V FAT G+VRRN LSDF ++ ++GK AM+L Sbjct: 625 VNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMEL 684 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 ++ C +E+DI+L T G+ +RFP+ +R+F GR+S GVRG+ LA+GD+V+SM Sbjct: 685 PEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSM 744 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS-----SVEGNISEERCQEL 793 +++ H +A+ ER ++K A+ + G+TE+ D+ EG +S+ R E+ Sbjct: 745 SVIRHFEAEPWERDAFVKRYRAE---LGGETEDEAETDRDAEDEAEGGEGVLSDARYAEM 801 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + ILT++ KG GK +SS+ + + R G+G+ A + S GALVA FPV DQ+ Sbjct: 802 LAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRG--GALVASFPVEPTDQV 859 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +L + G IR PV I SRA GV +F+T +E VVSV R+ + DEAE+ Sbjct: 860 MLATSTGQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGD-DEAEA 913 >gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] Length = 901 Score = 936 bits (2420), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/882 (53%), Positives = 622/882 (70%), Gaps = 8/882 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 15 TVSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARP 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +A+I++PD+ + L+E I GPDFPTGA++LGR+G + AY GRGS++IR + +E Sbjct: 195 VVDATLALIEDPDLTSEQLIEYIPGPDFPTGALMLGRSGARKAYLEGRGSVIIRAKTRVE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKAAM+EKIAE VREK+I +A ++DESDR G RVV+ELKR Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQLYR+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT +LL Sbjct: 315 ATPEVVLNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAHLL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV N+DE+V IR S + AR +LM R W A I + I LIDD Sbjct: 375 RKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +IK+ L+ILSSR R+ Sbjct: 435 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V+D PRRT IV+ DMEDED I REDMVVTV+ G++KR PL+ +R Sbjct: 495 MGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGWIKRTPLADFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP +GKA Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKA 614 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W NL VVFAT G+VRRN+LSDF + R+GKIAMK Sbjct: 615 IVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNVRRNGKIAMK 674 Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L D ++++V C++++D++L T G+ +RF + +RVF R S GVRGI L D V Sbjct: 675 LPEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRGIRLTGEDSV 734 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H+ ++R Y+K RR ++G T++ + D+ + N S E E+ Sbjct: 735 VSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSA 790 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G GK +SS+D+ + R G G+ A D K G +VA FPV +DQI+L Sbjct: 791 AENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGEIVASFPVELDDQIML 848 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + KG IRVPV+ I SR+ GV +F+T K E VVSV I Sbjct: 849 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWI 890 >gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] Length = 921 Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/882 (52%), Positives = 624/882 (70%), Gaps = 10/882 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 26 ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKAYRKSARAV 85 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 86 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A ++L D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEA 205 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D C+ +I+NPD+ + L+E I GPDFPTG ++LGR G + AY GRGS++ R +H E+ Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRAGARKAYLEGRGSVITRAKTHTEE 265 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I+++EIPYQVNK+ M+++IAE R+K+I I+ ++DESDR G RVVIELKR A Sbjct: 266 IRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELKRDA 325 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE TL L +F+ FRE+VV+RRT + LN Sbjct: 326 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFREDVVIRRTAFELN 385 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDRAHVL GLA+AV+N+DEVV IR S + +AR LM R+W A +I I LIDD + Sbjct: 386 KARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEILPFILLIDDPT 445 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + DGT LSE+Q RAILELRL RLT +G ++ +EL L +IKE L IL+SR R++ Sbjct: 446 HPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLAILASRERIM 505 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ EL K PRRT+IV+ DMEDED I +DMVVTV+ GY+KR L +RA Sbjct: 506 QIIRDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTETGYIKRTALVDFRA 565 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG SG ++++D VT LF+ +THT +LFF++ G VYK K WRLP GS ++GKA+ Sbjct: 566 QKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAI 625 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G I IMP DE W++L +VFAT G VRRN+LSDF + R+GKIAMK Sbjct: 626 VNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTNVMRNGKIAMKF 685 Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + + ++++ C+ ++D++L T G+ +RF + +RVF R S+GVRGI L D++ Sbjct: 686 EGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASLGVRGIKLKGDDKI 745 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H A+ DER Y+K RR ++G ++ ++++ GNI++ER E+ Sbjct: 746 VSMSVIRHFKAEADERAAYLK----MRRAMAGLADD-AEIEDEDVPAGNITQERYAEMSA 800 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ G GK +SS+D+ + R G G+ A D K G +VA FPV +DQI+L Sbjct: 801 AENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVASFPVERDDQIML 858 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + KG IRVPV I SR+ GV +F+T K+E VVSV I Sbjct: 859 ATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYI 900 >gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] Length = 905 Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G N+ Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C +DN DI++ L+E+++GPDFPT +ILG GIK+AY TGRGSI IRG + Sbjct: 189 GEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARD+AH+L+GL IAV+N+DE++RII+ + +P A++ELM RSW+A +I L+ L+D Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + +G +E Q +AILE+RL RLT + ++ + +L +L EI E L+IL SR Sbjct: 429 DKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRE 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LA+ D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ A +ER Y+ +S ++RL EE N + +++ E E+ Sbjct: 728 ISMTVLKGIKATREERDAYLS-VSWEKRLEIAKGEEF----NSEELGVDLTAESILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++RSG GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV +F E+VVS I ES Sbjct: 841 ITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885 >gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4] gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 925 Score = 934 bits (2414), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/896 (52%), Positives = 629/896 (70%), Gaps = 22/896 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Y K A Sbjct: 42 ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI+IR + Sbjct: 222 GEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G RVVI+LK Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV+ RR+KY Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ I LI+ Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLIE 461 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G LS+ Q AIL LRL+RLT +GRD I EL L I I E L++L +R Sbjct: 462 -AVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+KR PL Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP G+PQARG Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + +GK A Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700 Query: 676 MKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 ++ D D+ ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRGI+L GD Sbjct: 701 IRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VIS++ + + ++R Y++ + K D + + E+ + Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP +D DQ+ Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + + DE E T Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917 >gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 925 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/896 (52%), Positives = 628/896 (70%), Gaps = 22/896 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Y K A Sbjct: 42 ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI+IR + Sbjct: 222 GEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G RVVI+LK Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV+ RR+KY Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ I LI Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLI- 460 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++ G LS+ Q AIL LRL+RLT +GRD I EL L I I E L++L +R Sbjct: 461 EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+KR PL Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP G+PQARG Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + +GK A Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700 Query: 676 MKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 ++ + D ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRGI+L GD Sbjct: 701 IRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VIS++ + + ++R Y++ + K D + + E+ + Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP +D DQ+ Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + + DE E T Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917 >gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] Length = 868 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/870 (53%), Positives = 620/870 (71%), Gaps = 15/870 (1%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR G+VMGKYHPHG++AI Sbjct: 1 MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF Sbjct: 61 YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDG QEP VL AR+PN+LVNG GGIAVGMATNIP HNLGEVVD +A+ID+PD+ Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 + L+E + GPDFPTG V+LGR+G + AY GRGS++IR + +E+ DR IVV EIPY Sbjct: 181 EQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA+M+EKIAE VREKRI ++ ++DESDR G RVV+ELKR A+ +V+LNQL+R++ + Sbjct: 241 QVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSPM 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+A Sbjct: 301 QTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 V+N+DEVV IR S + AR++LM R W ASDI I LIDD ++ + D T LSE Q Sbjct: 361 VSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSETQ 420 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 RAILELRL RLT +G ++ +EL L +IKE LDILSSR R++ II EL V+++ Sbjct: 421 ARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQFA 480 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +RAQ+RGGKG SG+ ++ Sbjct: 481 VPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKE 540 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 ED VT+LF+ +THT +LFF++ G VYK K WRLP +GKA++NIL + G I I Sbjct: 541 EDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAI 600 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690 MP ++ W +L +VFAT G VRRN+LSDF + +GKIAMK + + ++++ C Sbjct: 601 MPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHAETKLINARIC 660 Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 ++E+D++L T G+ +RFP + +RVF RNSVGVRGI L G +V+SM++V H DA+ E Sbjct: 661 SEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSVVRHFDAEPWE 720 Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 R ++K + L + ++E TS +N EG +SE+R QE+ ++T+++ G G Sbjct: 721 RSAFIKRFRGE--LGNDVSDEETSEEN----EGALSEDRYQEMLAANDLLVTINKAGAGN 774 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 TS++D+R+S R G+G+ A + G +VA FPV DQI+L + KG IRVPV+ I Sbjct: 775 LTSAHDYRVSGRGGQGVGAM------KGGEIVATFPVTLEDQIMLATSKGQSIRVPVDGI 828 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900 SR+ GV +F+T K E VVSV I E+ Sbjct: 829 SFRSRSAGGVRVFNTGKGEEVVSVAWIAEN 858 >gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193] gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193] Length = 915 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/893 (52%), Positives = 631/893 (70%), Gaps = 14/893 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 25 TVSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+L+D+ K+TVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I++PD+ + L++ + GPDFPTGA++LGR+G + AY GRGS++IR + +E Sbjct: 205 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRSKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV E+PYQVNKAAM+EKIAE VREK+I +A ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L +F+ FRE+VV RRT YLL Sbjct: 325 ATPEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV N+DE+V IR S + AR +LM R W A I I LIDD Sbjct: 385 RKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +IKE L+ILSSR R+ Sbjct: 445 THTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V+D+ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL +R Sbjct: 505 MGIICDELREVRDQFAVPRRTEIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLVDFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP S +GKA Sbjct: 565 AQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP + W +L +VFAT G VRRN+LSDF + +GKIAMK Sbjct: 625 IVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMK 684 Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + + ++++ C++++D++L T G+ +RFP + +RVF RNSVGVRGI L++G + Sbjct: 685 FEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPTTDVRVFNSRNSVGVRGIKLSEGAE 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--ITSLKNDSSVEGNISEERCQE 792 V+SM+++ H DA+ ER ++K ++ + D E + + EG +SEER QE Sbjct: 745 VVSMSVIRHFDAEPWERSAFIKRFRSE---LGSDVSEDDAVAEVAEEIEEGALSEERYQE 801 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++T+++ G G TS++D+R+S R G+G+ A + G +VA FPV DQ Sbjct: 802 MLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAM------KGGEIVATFPVELGDQ 855 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I+L + KG IRVPV+ I SR+ GV +F+T K E VVSV I ES DE Sbjct: 856 IMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIAESGEDDE 908 >gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] Length = 905 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/885 (51%), Positives = 632/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G N+ Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C +DN DI++ L+E+++GPDFPT +ILG GIK+AY TGRGSI IRG + Sbjct: 189 GEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARD+AH+L+GL IAV+N+DE++RII+ + +P A++ELM RSW+A +I L+ L+D Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + +G +E Q +AILE+RL RLT + ++ + +L +L EI E L+IL SR Sbjct: 429 DKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRE 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LA+ D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ A +ER Y+ +S ++RL EE N + +++ E E+ Sbjct: 728 ISMTVLKGIKATREERDAYLS-VSWEKRLEIAKGEEF----NSEELGVDLTAESILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV +F E+VVS I ES Sbjct: 841 ITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885 >gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 930 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/905 (51%), Positives = 628/905 (69%), Gaps = 12/905 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEIPDPPEPPAPSDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGAS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN E++D +A+I NPD+ LD L+ I+ GPDFPTG +ILG GI++A Sbjct: 181 GIAVGMATNIPTHNPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIILGHAGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGSI+IR + IE+ DR IV+TEIPYQVNKA + E+IAELVR K+I I+D+R Sbjct: 241 FETGRGSILIRARAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+ +P L +L+A Sbjct: 301 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FITFREDVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMAT 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +W+A+D++ L+ LI D + +DG +YL+E Q R ILELRL RLTGL R+ I+ EL+ + Sbjct: 421 AWDAADVEPLLALIQDEGNVV-TDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L I++SR R + ++ +EL +++ EL TPR T I + D DE I MVV Sbjct: 480 AARINELLTIIASRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+ R +D V F TH VLFFSS G Y+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP SP A+G+AL+N+L G+ IT ++P P+DE+ W NL++VFAT GNVRRN Sbjct: 600 EKVWRLPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--- 775 R+S GVRGI LA+GD+V S+ ++ H +A +ER +++ +A+RR + + Sbjct: 720 RDSSGVRGIRLAEGDEVNSLCVLNHVEATVEERASFLRMANARRRAENAALQAGEEAEEV 779 Query: 776 ----KNDSSVEGN--ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +D ++ + I ER E++ E+ +LTVS GFG+R+S+YD+R+S R G+GI Sbjct: 780 AAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIAN 839 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 + +VA PV + ++LV+D G LIRVPV++IR+ SR GV +F E Sbjct: 840 MTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLDTTE 899 Query: 890 RVVSV 894 RV SV Sbjct: 900 RVTSV 904 >gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] Length = 910 Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/887 (52%), Positives = 633/887 (71%), Gaps = 5/887 (0%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E G V+I EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +K Sbjct: 9 EGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKP 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+VMGKYHPHG+AAIYDA RMAQ +S+R+ LI+GQGNFGSVDGDPPAA RY Sbjct: 69 YRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRY 128 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL AA LL D+ KDTVDF+P YD S EP VL A +PN+LVNGG GIAVGMATNI Sbjct: 129 TEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNI 188 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN E++D + +I P+ LD LM I+ GPDFPTG +ILGR+GI++A+ TGRG IV+ Sbjct: 189 PPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSAFETGRGGIVV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ DR I+V+E+PYQVNKA +LE+IAELVR K I IADLRDESDR+G R+ Sbjct: 249 RARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRM 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P + L L F+AFRE+V++ Sbjct: 309 VIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDCFIAFREDVIL 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+ +AR LM R W A D++ L Sbjct: 369 RRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++LIDD I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL +G I E L+I Sbjct: 429 LELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEVGRRIGELLEI 488 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++SR R L +++ ELL+V+ + PR T I + + D +DE I MVVT++ G++KR Sbjct: 489 IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVVTMTRDGFIKR 548 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PL +RAQ RGG+GR+ MR +D +T F TH VLFFS G ++EKVWRLP + Sbjct: 549 TPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFREKVWRLPESA 608 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P A+G+A++NIL G+ +T ++P P+DES WN+L++VFAT GNVRRN+L+DF + Sbjct: 609 PAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRNRLADFRNVRS 668 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IAMKLD D ++ V TC + +D+ L T+ +C+RF I+ +RVFAGR+S GVRGI Sbjct: 669 TGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNISE 787 L GD+VIS++++ H +A DER Y+K+ +AQRR G+ E+ ++++D ++ + ++ Sbjct: 729 LGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRR-AGGEEGELDAVESDEAAADIQLTP 787 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ER L+ E+ ILTV+ GFGK +S+Y++R++ R G+GI ++ N A+ A FPV Sbjct: 788 ERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNG-RAVAASFPV 846 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D I+LV+D+G LIR PV+++RI R GV + KDE+V SV Sbjct: 847 RPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSV 893 >gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 925 Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/896 (52%), Positives = 629/896 (70%), Gaps = 22/896 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G Y K A Sbjct: 42 ISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKSA 101 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA RYTE RL Sbjct: 102 KIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEARL 161 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMATNIP HNL Sbjct: 162 SPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNL 221 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY GRGSI+IR + Sbjct: 222 GEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSIIIRSRYN 281 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ GDR IV+TEIPYQ+ K+A++EKIAE ++KR+ I+D+RDES+R+G RVVI+LK Sbjct: 282 IEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVIDLK 341 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ DV+LNQL+R+T QS F NM+ALNG +PE +L I+ AFV FREEV+ RR+KY Sbjct: 342 RDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEVITRRSKY 401 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P A EL R W +D+ I LI+ Sbjct: 402 DLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYIKLIE 461 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G LS+ Q AIL LRL+RLT +GRD I EL L I I E L++L +R Sbjct: 462 -AVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLRNRE 520 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL I+ +E +V+ + TPRRT+IV +EDED I RE+MVVTV+H GY+KR PL Sbjct: 521 RLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYIKRTPLDT 580 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGGKGRSG+ +DED VT+LF+ THT VLFFS+ G VY+ KVWRLP G+PQARG Sbjct: 581 FRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPEGAPQARG 640 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L +GE ++T++P PEDE+ W NL+V+FAT G+VRRN + F + +GK A Sbjct: 641 RPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNVPSNGKFA 700 Query: 676 MKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 ++ + D+ ++ V ++ +D+LL T+ G+ +RF + +RVF R S GVRGI+L GD Sbjct: 701 IRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRGITLKDGD 760 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VIS++ + + ++R Y++ + K D + + E+ + Sbjct: 761 EVISLSTLRGFETTVEDRDKYLRS---------------AAWKTDPA-PAELPPEKIKAF 804 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + E FILTV+ G+GKRTSS+++R SNR G+GI + S+ N G++VA FP +D DQ+ Sbjct: 805 EEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFPAHDGDQL 862 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +LV+D+ LIR VN+IRIA R T+GV IF+ A+ E+VVS RI + + DE E T Sbjct: 863 MLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITD-DGDDEEEGT 917 >gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] Length = 894 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/895 (51%), Positives = 639/895 (71%), Gaps = 18/895 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVEAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTVY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARD+AH+L+GL IAV+N+DE++RII+ S +P TA++E+M R WNA +I L+ L+D Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +A+LE+RL RLT + ++ + +L +L EI E L+IL SR Sbjct: 429 DKA-MLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILGSRE 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LA D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGDDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLI----SGDTEEI-TSLKNDSSVEGNISEERC 790 ISM ++ + ++R Y+ QR I S + EE+ SL DS +E SEE Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKSFNPEELGVSLTLDSILEMANSEE-- 785 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV + Sbjct: 786 --------FILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMD 835 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D+++L+++ G LIR + +RI R T GV++F E+VVSV I ++ +E Sbjct: 836 DELMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSASEE 890 >gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] Length = 907 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/883 (53%), Positives = 615/883 (69%), Gaps = 8/883 (0%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI+ EM+ +YL YA++VI+ RAIPDLRDGLKPVHRR+LF M + G +K Y K AR Sbjct: 25 VSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARPV 84 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+A+IYDAL RMAQ +S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 85 GDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDKP 144 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A FLL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GIAVGMAT IP HNLGEV Sbjct: 145 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGEV 204 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG +A+I NPD+ +ALMEII PDFPTGA ILGR+G + AY GRGSI++R + IE+ Sbjct: 205 IDGTLALIANPDLSTEALMEIIPAPDFPTGATILGRSGARKAYLEGRGSIIVRAKTRIEE 264 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I++ EIPYQVNKA M+E IAE VREK+I IA ++DESDR G RVVIELKR A Sbjct: 265 IRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELKRDA 324 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +ADV+LNQLYR+T +Q F+ NM+ALNG +PE+ L L F+ FREEVV RRT + L Sbjct: 325 TADVVLNQLYRFTPMQISFACNMLALNGGRPEQLALRDFLTHFITFREEVVARRTAFELR 384 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AVAN+DEVV IR S +P AR LM R W A +I I LIDD + Sbjct: 385 KARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLIDDPT 444 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + + DGT LSE+Q RAIL+LRL RLT +G +I +EL L +I++ L+IL SR R++ Sbjct: 445 HKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRDRIM 504 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II EL ++ PRRT IV+ DMEDED I REDMVVT++ GY+KR PL+ +R+ Sbjct: 505 AIISTELAEMRALFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLAEFRS 564 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGGKG + + +++D VT LF+ +THT +LFF++ G VYK K WRLP+ QA+GKA+ Sbjct: 565 QNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLAGRQAKGKAI 624 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + QG I +MP E W +L +VFAT G+VR+N LSDF + R+GKIAMKL Sbjct: 625 VNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTNVMRNGKIAMKL 684 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 +++ + +D++L T G+ +RFP + IRVF R S GVRGI L D+V+SM Sbjct: 685 PEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTEIRVFKSRGSTGVRGIRLGAEDRVVSM 744 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND--SSVEGNISEERCQELKLK 796 AI+ H +AD ER Y+K QRRL++G ++ T D + G +S ER E+ Sbjct: 745 AIIRHFEADPAEREAYLK----QRRLMAGAVDDETEADEDEVAVAAGQLSTERYAEMSAA 800 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILT++ G GK TSS+D+ + R G G++A D + G LVA FPV +DQI+L Sbjct: 801 EDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMDGAMRG--GPLVASFPVEMSDQIMLA 858 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + G IRVPV +I SR+ GV +F+T DE+VVSV R+ E Sbjct: 859 TSTGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVVSVARVAE 901 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L +E ++T++ G+ KRT +FR NR GKG+ A+ +K +++ + +F N + Sbjct: 536 EDLIEREDMVVTITSGGYIKRTPLAEFRSQNRGGKGL-ASMSTKEDDV--VTTLFVANTH 592 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 Q++ + G + ++ + +A R KG I + + VS+ + ++ +E Sbjct: 593 TQLLFFTTDGMVYKLKTWRLPLAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEE 647 >gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] Length = 910 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/887 (52%), Positives = 633/887 (71%), Gaps = 5/887 (0%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E G V+I EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G +K Sbjct: 9 EGPSGQVPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKP 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+VMGKYHPHG+AAIYDA RMAQ +S+R+ LI+GQGNFGSVDGDPPAA RY Sbjct: 69 YRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRY 128 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL AA LL D+ KDTVDF+P YD S EP VL A +PN+LVNGG GIAVGMATNI Sbjct: 129 TEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNI 188 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN E++D + +I P+ LD LM I+ GPDFPTG +ILGR+GI++A+ TGRG IV+ Sbjct: 189 PPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSAFETGRGGIVV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ DR I+V+E+PYQVNKA +LE+IAELVR K I IADLRDESDR+G R+ Sbjct: 249 RARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRM 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P + L L F+AFRE+V++ Sbjct: 309 VIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDCFIAFREDVIL 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+ +AR LM R W A D++ L Sbjct: 369 RRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++LIDD I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL +G I E L+I Sbjct: 429 LELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEVGRRIGELLEI 488 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++SR R L +++ ELL+V+ + PR T I + + D +DE I MVVT++ G++KR Sbjct: 489 IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVVTMTRDGFIKR 548 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PL +RAQ RGG+GR+ MR +D +T F TH VLFFS G ++EKVWRLP + Sbjct: 549 TPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFREKVWRLPESA 608 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P A+G+A++NIL G+ +T ++P P+DES WN+L++VFAT GNVRRN+L+DF + Sbjct: 609 PAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRNRLADFRNVRS 668 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IAMKLD D ++ V TC + +D+ L T+ +C+RF I+ +RVFAGR+S GVRGI Sbjct: 669 TGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAGRDSSGVRGIR 728 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNISE 787 L GD+VIS++++ H +A DER Y+K+ +AQRR G+ E+ ++++D ++ + ++ Sbjct: 729 LGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRR-AGGEEGELDAVESDEAAADIQLTP 787 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ER L+ E+ ILTV+ GFGK +S+Y++R++ R G+GI ++ N A+ A FPV Sbjct: 788 ERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNG-RAVAASFPV 846 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D I+LV+D+G LIR PV+++RI R GV + KDE+V SV Sbjct: 847 RPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSV 893 >gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] Length = 908 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/881 (53%), Positives = 623/881 (70%), Gaps = 8/881 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I E++ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+GM + G +K Y K AR Sbjct: 25 SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A ++L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+IDNPD+ + ++E I PDFPTG +ILGR+G + AY GRGS+++R + +E Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLILGRSGARKAYLEGRGSVIVRAKTVVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNK+ M+++IAE R+KRI IA ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQL+R+T +Q+ F NM+ALNG KPE+ TL L AFV FREEV+ RRT + L Sbjct: 325 ATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLRAFLVAFVDFREEVIARRTAFEL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+RAH+L GLA+AV N+DEVV IR S + AR LM R W A+ I + I LIDD Sbjct: 385 RKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +I+E L+IL SR R+ Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSRDRI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L II+ EL V+D+ PRRT+IV+ DM+DED I +EDMVVTV+ GY+KR L+ +R Sbjct: 505 LQIIRDELTEVRDQFAVPRRTQIVDWSGDMDDEDLIEQEDMVVTVTSGGYIKRTALADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG S + ++ED VT LF+ +THT +LFF++ G YK K WRLP+GS A+GKA Sbjct: 565 AQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPLGSRTAKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + QG + IMP E+ W++L +VFAT G+VRRN LSDF + +GKIAMK Sbjct: 625 IVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFTNVKSNGKIAMK 684 Query: 678 L-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +++ C+ ++D++L T G+ +RFP + +RVF GR+S GVRGI L D+V+ Sbjct: 685 LPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDVRVFKGRDSTGVRGIRLQGDDKVV 744 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM+I+ H +A+ +ER Y+K RR ++G ++ ++++ + G IS ER + Sbjct: 745 SMSIIRHFEAEAEERAAYLK----MRRAMAGLADD-AEVEDEEAAPGQISPERYAAMSAA 799 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILT+S KG GK +SS+D+ + R G G+ A D K G LV FPV +DQI+LV Sbjct: 800 ENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMD--KAMRGGPLVTSFPVEMSDQIMLV 857 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + G IRVPV I SR+ GV +F T K E VVSV I Sbjct: 858 TSTGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVVSVAWI 898 >gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083] gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083] Length = 920 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/885 (53%), Positives = 617/885 (69%), Gaps = 12/885 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 S+SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G K Y K AR Sbjct: 25 SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A FLL D+ K+TVDF+ NYDG +EP VL ARYPN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VV +A+I+NPD+ + L+ + GPDFPTG ++LGR+G + AY GRGS+VIR + +E Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRSKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IV+ EIPYQVNK+ M+EKIAE VREK+I +A ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ +V+LNQL+R+TS+Q+ F NM+ALNG +PE TL L +F+ FRE+VV RRT Y L Sbjct: 325 ATPEVVLNQLFRFTSMQTYFGCNMLALNGGRPETLTLRRFLTSFIDFREDVVARRTAYEL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV N+DEVV IR S + AR +L R W A +I + I+LIDD Sbjct: 385 RKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++ + DGT LSE Q RAILELRL RLT +G ++ +EL L +I+E L+IL SR R+ Sbjct: 445 THKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSRDRI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II+ EL V+++ PRRT IV+ DMEDED I REDMVVT++ GY+KR PL +R Sbjct: 505 MAIIRDELSEVREKFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLIDFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG +G+ +DED +T LF+ +THT +LFF++ G YK K WRLP+G A+GKA Sbjct: 565 AQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRLPLGGRTAKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE W++L VVFAT G VRRNKLSDF + R+GKIAMK Sbjct: 625 IVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684 Query: 678 LDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + E ++ V + ++D++L T G+ +RF + +RVF R S GVRGI L D Sbjct: 685 FEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRATDVRVFNSRASTGVRGIKLQGKDT 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQE 792 V+SM+++ H +A DER Y+K RR ++G D E+ + + I++ER E Sbjct: 745 VVSMSVIRHFEATSDERAAYLK----MRRAMAGLADDAELPD-EEEGDANSQITQERYAE 799 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E ILT++ G GK +SS+D+ + R G G+ A D S G +VA FPV +DQ Sbjct: 800 MSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAMDKSMRG--GEVVASFPVELDDQ 857 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 I+L + KG IRVPV+ I SR+ GV +F+T K+E VVSV I Sbjct: 858 IMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNESVVSVAWI 902 >gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] Length = 908 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/889 (52%), Positives = 610/889 (68%), Gaps = 25/889 (2%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G K Y K ARI Sbjct: 22 IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILWTSHENGFVSTKAYRKSARIV 81 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNFGS+D DPPA+ RYTE RL K Sbjct: 82 GDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNFGSMDPDPPASMRYTEARLAKV 141 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTVDF+PNYDG+ EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 142 ADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEV 201 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D C+A +DNP + +D L++II GPDFPT +ILG G + AY GRGSI++R IE+ Sbjct: 202 IDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGTAGARKAYHEGRGSIIMRARHQIEE 261 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 GDR IV+T IPYQV K+ ++EKIAE ++KRI I+D+RDES+R+G RVVI+LKR A Sbjct: 262 GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNREGVRVVIDLKRDA 321 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +V+LNQL+R T QS F NM+A+ G +PE L I+++FV FREEV+ RRTK+ LN Sbjct: 322 TPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEVLNLKDIIESFVRFREEVITRRTKFELN 381 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDLID 435 KARDRAH+L+GL IAV NLDEVVRIIR SPNP AR L+ R W +I L++ I+ Sbjct: 382 KARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARETLLAREWPMGEIAPYIRLVEAIE 441 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D+ + T LSE+Q RAIL+LRL RLT LGRD+I +EL L I E L IL+ R Sbjct: 442 DAG--VAEAATYRLSEIQVRAILDLRLHRLTALGRDEIGDELEGLAKAIAEYLSILADRE 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L G+++QELL V+ TPR++ I +EDED I REDMVVT++ GY+KR PLS Sbjct: 500 KLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIEREDMVVTITLDGYIKRTPLST 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGGKGRSG+ +DED V +F+ STHT VLFFS+ G VY+ KVWRLP G P RG Sbjct: 560 FRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFSTAGKVYRLKVWRLPEGGPTTRG 619 Query: 616 KALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 + ++N+L +L++ E I T++P PEDE+ W L VVFAT GNVRRN + F I +GK Sbjct: 620 RPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATAKGNVRRNSMDAFANIPSNGKF 679 Query: 675 AMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 AMK DS D ++ V +D+LL T+ G+ +RF +R F R S GVRG++L Sbjct: 680 AMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGDEVREFTSRTSTGVRGMTLKGD 739 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VIS++I+ DER Y++ K + E +S ER E Sbjct: 740 DEVISLSILHRVGTTPDEREDYVR---------------FAPWKGEKEGEPALSAERYAE 784 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L+ +EQFILTV G+GK +S+Y++R + R G+GI T++ I G +VA FP DQ Sbjct: 785 LQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGRNGPVVASFPATQADQ 842 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+D+ LIR+P++ +R+ R + GV +F+ + E VVS R+ E E Sbjct: 843 LMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVSAVRLAEEE 891 >gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] Length = 908 Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/887 (54%), Positives = 635/887 (71%), Gaps = 19/887 (2%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G +K Y K AR Sbjct: 15 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I++PD+ + L++ + GPDFPTG V+LGR+G + AY GRGS+VIR + +E Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVVIRAKTRVE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKAAM+EKIAE VREK+I ++ ++DESDR G RVV+ELKR Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L +F+ FRE+V+ RRT Y L Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R W A DI I LIDD Sbjct: 375 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSEVQ RAILELRL RLT +G ++ +EL L +IKE L+ILSSR R+ Sbjct: 435 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 LGII EL V+D PRRT IV+ DMEDED I REDMVVT++ GY+KR PL +R Sbjct: 495 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLVDFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G ++GKA Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 614 Query: 618 LINILSLNQGERITTIMP--FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++NIL + G I IMP P+DE W NL VVFAT G+VRRN+LSDF + R+GKIA Sbjct: 615 IVNILPIPPGVSIAAIMPVDVPDDE--WENLQVVFATSGGDVRRNRLSDFTNVRRNGKIA 672 Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732 MKL D ++++ C++++D++L T G+ +RF + +RVF R S GVRGI L ++G Sbjct: 673 MKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRGIRLVSEG 732 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM+++ H A+ ER ++K ++ + G E+ +N EG++SEER QE Sbjct: 733 DEVVSMSVIRHFSAEPWERNAFIKRFRSE---LGG---EVAEDENGEESEGSLSEERYQE 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++T++ G G TS++D+R+S R G+G+ A + GA+VA FPV DQ Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------KGGAIVATFPVELEDQ 840 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I+L + KG IR PVN I SR+ GV +F+TAK E VVSV I E Sbjct: 841 IMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAE 887 Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust. Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804 Y++ +S++ R++ ++E+ ++++ +V G++ +E +L +E ++T++ Sbjct: 484 YLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDE---DLIEREDMVVTIT 540 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+ KRT DFR R GKG+ + E + +F N + Q++ + G + + Sbjct: 541 SGGYIKRTPLVDFRAQKRGGKGLSGM---QTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + R +KG I + VS+ I ++ D+ Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDD 638 >gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] Length = 908 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/887 (54%), Positives = 635/887 (71%), Gaps = 19/887 (2%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M ++G +K Y K AR Sbjct: 15 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I++PD+ + L++ + GPDFPTG V+LGR+G + AY GRGS+VIR + +E Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVVIRAKTRVE 254 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKAAM+EKIAE VREK+I ++ ++DESDR G RVV+ELKR Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELKRD 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LNQLYR++ +Q+ F NM+ALNG +PE+ TL L +F+ FRE+V+ RRT Y L Sbjct: 315 ATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTSFLDFREDVIARRTAYDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV+N+DEVV IR S + AR +LM R W A DI I LIDD Sbjct: 375 RKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLIDDP 434 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T+ DGT LSEVQ RAILELRL RLT +G ++ +EL L +IKE L+ILSSR R+ Sbjct: 435 THTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRERI 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 LGII EL V+D PRRT IV+ DMEDED I REDMVVT++ GY+KR PL +R Sbjct: 495 LGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTITSGGYIKRTPLVDFR 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ+RGGKG SG+ ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G ++GKA Sbjct: 555 AQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKA 614 Query: 618 LINILSLNQGERITTIMP--FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++NIL + G I IMP P+DE W NL VVFAT G+VRRN+LSDF + R+GKIA Sbjct: 615 IVNILPIPPGVSIAAIMPVDVPDDE--WENLQVVFATSGGDVRRNRLSDFTNVRRNGKIA 672 Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732 MKL D ++++ C++++D++L T G+ +RF + +RVF R S GVRGI L ++G Sbjct: 673 MKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNSRESTGVRGIRLVSEG 732 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM+++ H A+ ER ++K ++ + G E+ +N EG++SEER QE Sbjct: 733 DEVVSMSVIRHFSAEPWERNAFIKRFRSE---LGG---EVAEDENGEESEGSLSEERYQE 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++T++ G G TS++D+R+S R G+G+ A + GA+VA FPV DQ Sbjct: 787 MLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAM------KGGAIVATFPVELEDQ 840 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 I+L + KG IR PVN I SR+ GV +F+TAK E VVSV I E Sbjct: 841 IMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWIAE 887 Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust. Identities = 34/161 (21%), Positives = 77/161 (47%), Gaps = 15/161 (9%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804 Y++ +S++ R++ ++E+ ++++ +V G++ +E +L +E ++T++ Sbjct: 484 YLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDE---DLIEREDMVVTIT 540 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+ KRT DFR R GKG+ + E + +F N + Q++ + G + + Sbjct: 541 SGGYIKRTPLVDFRAQKRGGKGLSGM---QTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + R +KG I + VS+ I ++ D+ Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDD 638 >gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] Length = 905 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/885 (51%), Positives = 634/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G NK Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A+ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI+IRG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIIRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIA++V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE VV RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVVTNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ +GKIA Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL EE N + +++ E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEEF----NPEELGVSLTAPAIVEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + IRI R T GV++F E+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] Length = 896 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/905 (51%), Positives = 625/905 (69%), Gaps = 27/905 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +D + I+ +SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETVLADPSD---ISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +N+ Y K AR+ GEVMGKYHPHG+++IYDALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 QESGFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K A LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A IDNP I D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R +E+ GDR IV+T IPYQV K+ ++EKIAE ++KR+ I+D+R Sbjct: 238 YNTGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE L I++A Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEILGLRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FREEV+ RRTKY LNKARDRAH+L+GL +AV NLDEVV+IIR S +P AR L+ + Sbjct: 358 FIKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAK 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNS 479 W +I + L++ I DG Y LS++Q RAIL+LRL RLT LGRD+I EL Sbjct: 418 EWPIGEIAPYLRLVEAIENDI--DGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAE 475 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I E L IL+ R +L ++++EL +++ E TPR + I +EDED I REDMV Sbjct: 476 LAEAITEYLAILADRVKLYAVMREELEAIEREFATPRLSEITAAADGIEDEDLIEREDMV 535 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY Sbjct: 536 VTVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVY 595 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 + KVWRLP G P RG+ ++N+L L GE I+T++P PEDE W L+V+FAT G+VRR Sbjct: 596 RLKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAMGSVRR 655 Query: 660 NKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 N + F + +GKIAMK + DE ++ V + +D+LL T+ G+ +RF +R F Sbjct: 656 NSMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREF 715 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 RNS GVRG+ LA GD VIS++++ + AD ++R Y++ + + Sbjct: 716 QSRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKP-------------E 762 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 D ++ R QE EQFILTV G+GK +S+Y++R + R G+GI T++ I Sbjct: 763 KDGEMQDQAMFARMQE---NEQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIG 817 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA FP DQ++LV+D+ LIR+ ++ +R+ R + GV +F+ A +E VVS + Sbjct: 818 RNGPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAK 877 Query: 897 IRESE 901 I ESE Sbjct: 878 IEESE 882 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 32/197 (16%) Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q R G G+ + D D V L SVL S +E+ R P+ G+ Sbjct: 716 QSRNSTGVRGMKLADGDAVISL-------SVLHRSGADGEQREEYLRFAPWKPEKDGEMQ 768 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + F + + + V A +G KLS + R+G+ + Sbjct: 769 DQAM-------------FARMQENEQFILTVCANGYG-----KLSSAYEYRRTGRGGQGI 810 Query: 679 DSRDEI------LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 + D I ++ T+ + ++L T + +R + ++RV GRNS GVR ++A Sbjct: 811 TNIDNIGRNGPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVI-GRNSAGVRLFNVADN 869 Query: 733 DQVISMAIVLHADADYD 749 + V+S A + ++A+ D Sbjct: 870 EHVVSAAKIEESEAEAD 886 >gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003] Length = 883 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/889 (52%), Positives = 624/889 (70%), Gaps = 11/889 (1%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G +K Y K AR G+VMGK Sbjct: 1 MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K A FLL Sbjct: 61 YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D +A Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD+ +ALM+ + GPDFPTGA I+GR G + AY GRGS++IR + IE+ DR Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEEIRKDRF 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++ EIPYQVNKA M+EK+A+LVREK++ IA + DESDR G RVVIELKR A+ADV+L Sbjct: 241 AIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ F NM+ALNG +PE+ TL L F+AFREEVV RRT Y L KAR+R+ Sbjct: 301 NQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARERS 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GLA+AV+N+DEVV IR S +P AR LM+R W A +I + + LIDD + + D Sbjct: 361 HILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDD 420 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 GT LSEVQ RAIL+LRL RLT +G ++ +EL L +I++ L IL+SR R++ II E Sbjct: 421 GTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATE 480 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L V+ PRRT IV+ D++DED I REDMVVT++ GY+KR PL+ +RAQRRGGK Sbjct: 481 LREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRAQRRGGK 540 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G + + +++D VT LF+ +THT +LFF++ G VY K WRLP+ ++GKA++NIL + Sbjct: 541 GLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPI 600 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 QG + ++MP E E +W++ V FAT G+VRRN LSDF ++ ++GK AM+L + Sbjct: 601 PQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMELPEGVTL 660 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 + C +E+DI+L T G+ +RFP+ +R+F GR+S GVRG+ LA+GD+V+SM+++ H Sbjct: 661 VDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHF 720 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS-----SVEGNISEERCQELKLKEQF 799 +A+ ER ++K A+ + G+TE+ D+ EG +S+ R E+ + Sbjct: 721 EAEPWERDAFVKRYRAE---LGGETEDEAETDRDAEDEAEGGEGVLSDARYAEMLAAQDL 777 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ILT++ KG GK +SS+ + + R G+G+ A + S GALVA FPV DQ++L + Sbjct: 778 ILTITAKGLGKISSSHSYPVRGRGGQGVTAFEKSMRG--GALVASFPVEPTDQVMLATST 835 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 G IR PV I SRA GV +F+T +E VVSV R+ + DEAE+ Sbjct: 836 GQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADPGD-DEAEA 883 >gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03] gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07] gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22] gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26] gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32] gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12] Length = 921 Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/909 (51%), Positives = 633/909 (69%), Gaps = 20/909 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE E + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++K Y K AR GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN EV+D +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 +ATGRG+++IR + IE+ DR+ I+VTEIPYQVNKA + E+IA+LVR K+I IAD+R Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP L +L+A Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 WNA+D++ L+ LI D + DG + L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 421 QWNAADVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+I+ S R + +++ EL + E+ TPR T I + D +DE I MVV Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+G R +D V F TH V+FFSS G VY+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KVWRLP P A+G+AL+N+L + IT ++P P+DE W L++VFAT GNVRRN Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL-------------I 765 R S GVRGI LA+GD+VIS+A++ H +A +ER Y++ +A+RR + Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDADTV 779 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 D++E + S+ + +S ER +L+ E+ +L VS+ GFG+R+S+YD+R+S R G+ Sbjct: 780 QVDSDE----EEGSNTDALLSPERFAQLEEAEEILLIVSDGGFGRRSSAYDYRVSGRGGQ 835 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 GI S + A PV + ++LV+D G LIRVPV+++R+ +R GV +F Sbjct: 836 GITNMTFSANKRGKEVAATLPVLEGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRL 895 Query: 886 AKDERVVSV 894 DERV SV Sbjct: 896 NDDERVTSV 904 >gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi] gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi] Length = 902 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/897 (51%), Positives = 644/897 (71%), Gaps = 7/897 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I++AF+ FR+EV++RR Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S +I +I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 +LI DS+ + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YR QRRGGKG+ G +++ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+ P Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG+AL+NI L +GE IT IMP P + N +VF T +GN+RRN L+DF I + Sbjct: 601 TARGRALVNIFPLAEGETITNIMPLPSENDENQN--IVFTTAYGNIRRNSLADFHYIPSN 658 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+KLD D+++SV+ C + + + L+T+ G+ +RF +S +R F RNS GVRGI LAK Sbjct: 659 GKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ + + Y+K + +RL + I S + + I E Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L + E+FILT++E GFGKRTS+Y++RI+NR G GI T++ + G +VA FPV D Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I + + +++ S Sbjct: 836 NIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 892 >gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 905 Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/885 (51%), Positives = 634/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S + A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ +L +L EI E L+IL SR+ Sbjct: 429 DKA-MLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I E+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L + E IT IMP PE++ WNNL ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK+G+ +RFP+ ++RV R S GVRG+ LA+ D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLAREDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL E N + ++ + E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYLT-VPWEKRLEIAKGEAF----NPEELGVALTADSILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGK++S+Y +RI++R G GI D++ ++ G +V V PV +++++L Sbjct: 783 FEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDNELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F + E+VVSV I ES Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAES 885 >gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114] gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114] Length = 905 Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/884 (53%), Positives = 622/884 (70%), Gaps = 10/884 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K Y K AR Sbjct: 12 SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 72 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I+ PD+ + L++ + GPDFPTG ++LGR G + AY GRGS++IR + +E Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRGGARKAYLEGRGSVIIRAKTRVE 251 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I+V EIPYQVNKA M+EKIAE VREK+I IA ++DESDR G RVVIELKR Sbjct: 252 EIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V++NQLYR+T LQ+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT YLL Sbjct: 312 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAYLL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV N+DEVV IR S + AR +LM R W A DI I LIDD Sbjct: 372 RKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALIDDP 431 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IKE L+IL SR R+ Sbjct: 432 THTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRDRI 491 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +GII EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 492 MGIIADELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 551 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG SG ++++D VT LF+ +THT +LFF++ G YK K WRLP G+ ++GKA Sbjct: 552 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGARTSKGKA 611 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + QG I I+P DE W+ L +VFAT G VRRN LSDF + +GKIAMK Sbjct: 612 IVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 671 Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + + +++ + ++D++L T G+ +RFP +RVF R+SVGVRG+ L+ D+ Sbjct: 672 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGVKLSGHDK 731 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDSSVEGNISEERCQEL 793 V+SM+++ H DA DER Y+K RR + G T++ TS ++++S IS +R E+ Sbjct: 732 VVSMSVIRHFDATADERAAYLK----MRRAMVGLTDDSETSDEDETSANATISPDRYAEM 787 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E ILT++ G GK +SS+D+ + R G G+ A D K + G +VA FPV +DQI Sbjct: 788 SAAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWD--KRMQTGQIVASFPVEMDDQI 845 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L + KG IRVPV I SR+ GV +F+T K E VVSV I Sbjct: 846 MLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWI 889 >gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001] gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001] Length = 920 Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/904 (51%), Positives = 636/904 (70%), Gaps = 11/904 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE E + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G ++K Y K AR GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 61 HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIPTHN EV+D +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 +ATGRG+++IR + IE+ DR+ I+VTEIPYQVNKA + E+IA+LVR K+I IAD+R Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP L +L+A Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+ AR LM Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W+A++++ L+ LI D + DG + L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 421 QWDAAEVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L+I+ S R + +++ EL + E+ TPR T I + D +DE I MVV Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVV 539 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+G R +D V F TH V+FFSS G VY+ Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 +KVWRLP P A+G+AL+N+L + IT ++P P+DE W L++VFAT GNVRRN Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718 +LSDF I SG IAMKLD D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR---LISGDTEEITSL 775 R S GVRGI LA+GD+VIS+A++ H +A +ER Y++ +A+RR E++ ++ Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAV 779 Query: 776 KNDSSVEGN-----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + DS EG+ +S ER ++L++ E+ +L VS+ GFG+R+S+YD+R+S R G+GI Sbjct: 780 QPDSDEEGSDTDALLSPERFEQLEVAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNM 839 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S + A PV ++LV+D G LIRVPV+++R+ +R GV +F DER Sbjct: 840 TFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDER 899 Query: 891 VVSV 894 V SV Sbjct: 900 VTSV 903 >gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] Length = 923 Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/882 (52%), Positives = 619/882 (70%), Gaps = 9/882 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SITDEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 24 ISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYETGNSHDKSYRKSARPV 83 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+ AIYDAL RMAQD+S+ L L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 84 GDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A F+L D+ KDTVDF+ NYDG +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 144 AAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 203 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD +A+ID+PD+ + L+E + GPDFPTG ++LGR+G + AY GRGS+++R + +E+ Sbjct: 204 VDATLALIDDPDLSSEDLIEYVPGPDFPTGGIMLGRSGARKAYLEGRGSVIVRAKTRVEE 263 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR I++ EIPYQVNKA M+EKIAE VREK+I I+ ++DESDR G RVV+ELKR A Sbjct: 264 IRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELKRDA 323 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+R+T +Q+ F NM+ALNG +PE+ TL L +FV FREEVV RRT + L Sbjct: 324 TAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFVDFREEVVARRTAFELR 383 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R+H+L GLA+AV N+DE+V IR S + AR +LM R W A I + I+LIDD + Sbjct: 384 KARERSHILCGLAVAVTNIDEIVATIRSSADAAEAREKLMTRRWPAESILEYIELIDDPT 443 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +T DGT LSE Q RAILELRL RLT +G ++ +EL L +I++ L+IL SR R++ Sbjct: 444 HTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIRDYLEILGSRERIM 503 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ EL V+D+ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL+ +RA Sbjct: 504 QIIRDELHEVRDQFAVPRRTAIVDWSGDMDDEDLIEREDMVVTVTSGGYIKRTPLADFRA 563 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG G+ ++ED VT LF+ +THT +LFF++ G YK K WRLP GS ++GKA+ Sbjct: 564 QRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGSRTSKGKAI 623 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +NIL + G + I+P DE W +L V FAT G VRRN LSDF + +GKIAMK Sbjct: 624 VNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAGTVRRNALSDFTNVKSNGKIAMKF 683 Query: 679 D---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + + ++++V ++D++L T G+ +RF + +RVF R S GVRGI L D V Sbjct: 684 EGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRANDVRVFNSRASTGVRGIKLNGDDTV 743 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM+++ H +AD ER Y+K RR ++G ++ +D+ G +S+ER E+ Sbjct: 744 VSMSVIRHFEADPAERAAYLK----MRRAMAGLADDAEVDDDDAVEAGQLSQERYAEMSA 799 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ILT++ +G GK +SS+D+ + R G G+ A D K G +V FPV+ +DQI+L Sbjct: 800 AENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIVTSFPVDIHDQIML 857 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+++G IRVPV I SR+ GV +F T K+E V+SV I Sbjct: 858 VTNQGQSIRVPVEGISFRSRSAGGVKVFDTGKNEMVMSVAWI 899 >gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] Length = 910 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/903 (51%), Positives = 624/903 (69%), Gaps = 23/903 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +D + I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETALADPSD---ISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NK Y K ARI G+V+GKYHPHG++AIY ALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K + LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A IDN I +D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ GDR IV+T IPYQV K ++EKIAE ++KRI I+D+R Sbjct: 238 YHTGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE + I++A Sbjct: 298 DESSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P AR L+ R Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W ++I + L++ +G D + LS+ Q RAIL+LRL RLT LGRD+I NEL L Sbjct: 418 DWPVAEIAPYLKLVEAIETEVGGD-SYRLSDTQVRAILDLRLHRLTALGRDEIGNELAEL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L IL R +L ++++E +++ + TPR + I ++DED I RE+MVV Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIDDEDLIEREEMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L+ GE I T++P PEDE SW +L+V+FAT +G VRRN Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656 Query: 661 KLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + F I +GKIAM+ D S D ++ V T+E+D+LL T+ G+ +RF + +R F Sbjct: 657 SMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVRG++L K D+VIS++I+ + A+ +ER Y++ K + Sbjct: 717 RTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLR---------------FAPWKAE 761 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +S ER EL KEQFILTV G+GK +S+YD+R + R G+GI T++ I Sbjct: 762 KEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGI--TNIDNIGRN 819 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA FP D ++LV+D+ LIR+ + +R+ R++ GV +F+ + DE VVS +I Sbjct: 820 GPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 879 Query: 899 ESE 901 ES+ Sbjct: 880 ESD 882 >gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 900 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/895 (51%), Positives = 642/895 (71%), Gaps = 7/895 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTV+FRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S +I +I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 +LI DSS + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSSSFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YR QRRGGKG+ G +++ED +T+LF+ +THTS+LFFS++G VY+ KV++LP+ P Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLAEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG+AL+NI L+ E IT IMP P + N +VFAT +GN+RRN L+DF I + Sbjct: 601 TARGRALVNIFPLSDSETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSN 658 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI L K Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ + + Y+K + +RL + I S + + I E Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L + E+FILT++E GFGKRTS+Y++R++NR G GI T++ + G +VA FPV D Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VNEIRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 836 NIMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 >gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 900 Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/895 (51%), Positives = 642/895 (71%), Gaps = 7/895 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQK +HFLL+D+ +DTV+FRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ ++NP++ LD L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LKR A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431 T++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ + W S +I +I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 +LI DS+ + DG L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 ELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IK L +K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YR QRRGGKG+ G +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+ P Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG+AL+NI L+ GE IT IMP P + N +VFAT +GN+RRN L+DF I + Sbjct: 601 TARGRALVNIFPLSDGETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSN 658 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI L K Sbjct: 659 GKIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVK 718 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ + + Y+K + +RL + I S + + I E Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFL 777 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L + E+FILT++E GFGKRTS+Y++R++NR G GI T++ + G +VA FPV D Sbjct: 778 KLAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGD 835 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 I+L++DKG LIR+ VNEIRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 836 NIMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890 >gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] Length = 905 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/890 (51%), Positives = 634/890 (71%), Gaps = 18/890 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L+EGQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVNFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ +GKIA Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEI-TSLKNDSSVEGNISEERC 790 ISM ++ + ++R Y+ QR I+ ++EE+ SL + VE SEE Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNSEELGVSLTVPAIVEMANSEE-- 785 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV + Sbjct: 786 --------FILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMD 835 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D+++L+++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 836 DELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5] gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5] Length = 905 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/885 (51%), Positives = 632/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ +GKIA Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFTKLQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ QR I+ + N + +++ E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKG-----EVFNPEELGVSLTAPAIVEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] Length = 898 Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/895 (50%), Positives = 638/895 (71%), Gaps = 10/895 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQ +SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARD+AH+L+GL IAV+N+DE++RII+ + + A++ELM RSW A I L+ L+D Sbjct: 369 LLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + D + +E+Q +AILE+RL RLT + ++ + EL +L EI E ++IL SR+ Sbjct: 429 DKAMLNEQDKCSF-TELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L + E IT IMP PE++ W+NL ++FAT GN+RR+ L DF +I SGKIA Sbjct: 608 RPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSSGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ ++ ++R Y A+R I+ E N + ++ + ++ Sbjct: 728 ISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEE-----FNLEELGVTLTADSILKMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKIDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++ G LIR + +RI R T GV++F E+VVSV I E+ + AE +E Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETS--ESAEDSE 893 >gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E] gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii] gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii] gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22] gi|1093608|prf||2104274A DNA gyrase Length = 905 Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/882 (51%), Positives = 634/882 (71%), Gaps = 8/882 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L++D+ K TV F NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGKAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IA++N+DE++ II+ S + A++ELM R W DI LI L+D Sbjct: 369 LLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + GT+ +EVQ +AILE++L RLT + ++ + +L L +I E L+IL+SR+ Sbjct: 429 D-KVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILASRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E +PR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NILSL + E IT IMP PE++ W++L ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++R+ R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ ++ ++R Y+ + ++RL EE N + N++ + E+ Sbjct: 728 ISMTVLKGINSTKEDRDAYLT-VPWEKRLEIAKGEEF----NLEELGVNLNADSILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++ G LIR + +RI R T GV++F DE+VVSV I Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882 >gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246] gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246] Length = 905 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ +GKIA Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL E N + +++ E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAIVEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 930 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/884 (52%), Positives = 622/884 (70%), Gaps = 9/884 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 1 MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA Sbjct: 61 GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + FLLDD+ +DTVDF+PNYD S EP VL A +PN+LVNG GIAVGMATNIPTHN GEV Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R + IE+ Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEE 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR+ I++TEIPYQVNKA + EKIA+LVR K I I+D+RDESDR G RVVIELKR A Sbjct: 241 IRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LNQLYR+T LQ+ FS NM+AL+ KP L IL+AF+ FREEV++RR ++ LN Sbjct: 301 TPDVVLNQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLN 360 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDR H+LVGL +AVAN+DEV+ +IR +P+ TAR LM R W+AS++ L++LI D Sbjct: 361 KARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEG 420 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 I DG + L+E Q R ILELRL RLTGL R+ I+ EL + +I E L I+ SR R + Sbjct: 421 NVI-IDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRM 479 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 ++++ELL+ + E+ TPR T I + L D DE I MVVT++ G++KR PL V+R+ Sbjct: 480 EVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRS 539 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG+GR+ R +D + F TH V+FFSS G Y+ KVW LP +P A+G+AL Sbjct: 540 QNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRAL 599 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L + IT ++P P+DE W +L++ FAT GNVRRN+LSDF I SG IAMKL Sbjct: 600 VNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKL 659 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVI 736 D D ++ V TC + D+ L TK +C+RF I+ +RVFAGR S GVRGI L +GD VI Sbjct: 660 DEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVI 719 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRL------ISGDTEEITSLKNDSSVEGNISEERC 790 S+ I+ H DA +ER Y++ +A+RR S + E ++ + + G++++ER Sbjct: 720 SLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERF 779 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +EL+ +E+ +LTV++ GFG+R+S+YD+R+S R G+GI S +V P D Sbjct: 780 EELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDG 839 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++LV+D G LIR+PV+++R+ SR GV +F E V+ V Sbjct: 840 TDVMLVTDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICV 883 >gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] Length = 905 Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/885 (51%), Positives = 633/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 AKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S + A++ELM R W A +I L+ L+D Sbjct: 369 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 429 DKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILGSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L DF ++ +GKIA Sbjct: 608 RPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQSNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++RV R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL E N + +++ E+ Sbjct: 728 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAIVEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F E+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885 >gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] Length = 894 Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/912 (51%), Positives = 631/912 (69%), Gaps = 29/912 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ +D + I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF Sbjct: 1 MTDETALADPSD---ISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NK Y K ARI G+V+GKYHPHG++AIYDALARM QDWS+R+ LI+GQGNFGS+ Sbjct: 58 HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSM 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D DPPAA RYTE RL K LLDDL KDTVDF+PNYD S EP VL AR+PN+LVNG G Sbjct: 118 DPDPPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+ C+A I+NP I +D L++I+ GPDFPT +ILG++G ++A Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLILGQSGARSA 237 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGSI++R IE+ GDR+ IV+T IPYQV K ++EKIAE ++KRI I+D+R Sbjct: 238 YHTGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G R+V++LKR A+ +V+LNQL+R T QS F NM+A+ G +PE + I++A Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P AR L+ R Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W ++I + L+ ++ T S T LS+ Q RAIL+LRL RLT LGRD+I +EL L Sbjct: 418 DWPVAEIAPYLKLV-EAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAEL 476 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E L IL R +L ++++E +++ + TPR + I +EDED I RE+MVV Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIEDEDLIEREEMVV 536 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+ GY+KR PL +RAQ RGGKGRSG+ +DED +T+LF+ STHT VLFFS+ G VY+ Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KVWRLP G P RG+ ++N+L L GE I T++P PEDE SW +L+V+FAT +G VRRN Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656 Query: 661 KLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + F + +GKIAM+ DS D ++ V T+E+D+LL T+ G+ +RF + +R F Sbjct: 657 SMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R S GVRG++L D+VIS++I+ + AD D+R Y++ + Sbjct: 717 RTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWK----------------- 759 Query: 779 SSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 EG + ++ L K +EQFILTV G+GK +S+Y++R + R G+GI T++ I Sbjct: 760 PEKEGEMQDQDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGI--TNIDNIGR 817 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA FP DQ++LV+D+ LIR+ ++ +R+ R++ GV +F+ + DE VVS +I Sbjct: 818 NGPVVASFPATQADQLMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHVVSAAKI 877 Query: 898 RESEIVDEAEST 909 ES DEAE T Sbjct: 878 EES---DEAEDT 886 >gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] Length = 908 Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/887 (51%), Positives = 634/887 (71%), Gaps = 9/887 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 10 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 70 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 190 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S DI+++I+L Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 429 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + DS+ + +G MY L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS Sbjct: 430 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 487 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + S L+ I+KQ LL K +L TPR T I + + +++ E I +E+MVVTV+ G+VKRV Sbjct: 488 TDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 547 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 548 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 607 Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG++L+NI L+ GE IT++MP P +DE NL VVFAT GN+RRN LSDF + Sbjct: 608 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 667 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 668 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 727 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 728 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 786 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ ++ G +VA FPV+ Sbjct: 787 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 844 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + Sbjct: 845 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 891 >gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] Length = 934 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/901 (51%), Positives = 626/901 (69%), Gaps = 11/901 (1%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Y K AR Sbjct: 16 VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 75 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL +A Sbjct: 76 GDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLARA 135 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG GIAVGMATNIP HN GE+ Sbjct: 136 ASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIAVGMATNIPPHNPGEI 195 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I+ PD+ LD +++ + GPDFPTG ILGR GI++A+ TGRGS++IR + +E Sbjct: 196 IDATLAMIERPDMTLDDILQYVPGPDFPTGGTILGRAGIRSAFETGRGSVIIRARAEVED 255 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR+ I+VTEIPYQVNKA + E+IAELVR K++ I+D+RDESDR G R+VIE+KR A Sbjct: 256 IRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDESDRSGMRIVIEIKRDA 315 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +V+LNQLYR+T LQ+ F VNM+AL+G +P L +L+AF+ FREEV++RR ++ LN Sbjct: 316 TPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLQAFIRFREEVILRRARFDLN 375 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KARDR H+LVGL IAVAN+D V+ +IR +P+ TAR LM+R+W+A DI L+ LI D Sbjct: 376 KARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERAWDAGDIAPLLALIHDEG 435 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + D ++L+E Q R ILELRL RLTGL RD I+ EL+ + I E L+I++SR R + Sbjct: 436 NVV-VDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVATRINELLEIIASRPRRM 494 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +++ EL +V+ E+ TPR T I + D DE I MVVT++ G++KR PL V+RA Sbjct: 495 EVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVVTITRDGFIKRTPLDVFRA 554 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG+GR+ R +D + F TH VLFFSS G Y+EKVWRLP SP A+G+AL Sbjct: 555 QNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYREKVWRLPEASPTAKGRAL 614 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L + IT ++P P+DE W NL++VFAT GNVRRN+LSDF I SG IAMKL Sbjct: 615 VNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRNRLSDFRNIRSSGLIAMKL 674 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVI 736 D D ++ V TC + D+ L T+ +C+RF I+ +RVFAGR S GVRGI LA+GD+V Sbjct: 675 DDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAGRGSSGVRGIRLAEGDEVN 734 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISG--------DTEEITSLKNDSSVEGNISEE 788 S+ ++ H DA +ER Y++ +A+RR + T +I S +++ + + E Sbjct: 735 SLCVLNHVDATVEERSAYLRIANARRRAENAAQNGEDTDTTPDIASDDEETATDLALPPE 794 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R E++ E+ +L VS GFG+R+S+YD+R+S R G GI A+VA PV Sbjct: 795 RVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVL 854 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++LV+D G LIR+PV++IRI SR GV +F E V SV + + DE ++ Sbjct: 855 AGTDVMLVTDAGRLIRLPVDQIRIMSRQASGVTLFRLNDTEEVTSVFPVMDDGEDDETDA 914 Query: 909 T 909 T Sbjct: 915 T 915 >gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia] Length = 902 Score = 917 bits (2371), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/887 (51%), Positives = 634/887 (71%), Gaps = 9/887 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + DS+ + +G MY L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + S L+ I+KQ LL K +L TPR T I + + +++ E I +E+MVVTV+ G+VKRV Sbjct: 482 TDSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601 Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG++L+NI L+ GE IT++MP P +DE NL VVFAT GN+RRN LSDF + Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 780 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ ++ G +VA FPV+ Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885 >gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington] gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington] Length = 905 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/885 (50%), Positives = 632/885 (71%), Gaps = 8/885 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 9 LVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RM QD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L++D+ K TV F NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 129 SKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 189 GEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGKAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 249 IENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 309 KDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GLAIA++N+DE++ II+ S + A++ELM R W DI LI L+D Sbjct: 369 LLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLIKLVD 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + G + +EVQ +AILE++L RLT + ++ + +L L EI E L+IL SR+ Sbjct: 429 D-KVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILDSRT 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K+EL+ VK+E PR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 488 RLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKGRSG+ MRDED +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 548 YRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQGKG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L + E IT IMP PE++ W++L ++FAT GN+RR+ L DF +I +GKIA Sbjct: 608 RPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQLNGKIA 667 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RFP+ ++R+ R S GVRG+ LAK D V Sbjct: 668 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKEDSV 727 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ ++ ++R Y+ + ++RL EE N ++ +++ + E+ Sbjct: 728 ISMTVLKGINSTKEDRDAYLT-VPWEKRLKIAKGEEF----NLEALGVHLNADSILEMAN 782 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 783 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 840 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ G LIR + +RI R T GV++F DE+VVSV I E+ Sbjct: 841 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAET 885 >gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] Length = 908 Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 10 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 70 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 190 LGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S DI+++I+L Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIEL 429 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + DS+ + +G MY L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS Sbjct: 430 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 487 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV Sbjct: 488 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 547 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 548 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 607 Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG++L+NI L+ GE IT++MP P +DE NL VVFAT GN+RRN LSDF + Sbjct: 608 SRGRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQYVPS 667 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 668 SGKIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 727 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 728 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 786 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ ++ G +VA FPV+ Sbjct: 787 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 844 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + Sbjct: 845 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 891 >gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] Length = 941 Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/899 (51%), Positives = 639/899 (71%), Gaps = 14/899 (1%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 +G +++ +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G +K Y K Sbjct: 22 EGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMQENGFTADKPYKK 81 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPHG++AIYDA+ RMAQ +SLR+ LI+GQGNFGS+DGDPPAA RYTE Sbjct: 82 SARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSMDGDPPAAMRYTEA 141 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K+A LL+ + +DTVDF PNYD S QEP VL A +PN+LVNG GIAVGMATNIPTH Sbjct: 142 RLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGANGIAVGMATNIPTH 201 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N GEV+D +A+I P+ L+ LM+I+ GPDFPTGA+ILGR GI++A+ TGRGSIV+R Sbjct: 202 NPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALILGRAGIRSAFETGRGSIVLRAR 261 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ G R I ++EIPYQVNKAA++E+IAELVR K+I I+DLRDESDR G R+VIE Sbjct: 262 AEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDLRDESDRSGLRIVIE 321 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ A+ +V+LN LYRYT+LQ+ F+VN +AL+ +P++ L L+AF+ FREEV++RR+ Sbjct: 322 LKKDATPEVVLNHLYRYTNLQTSFAVNFLALHQGRPQQMGLRQALQAFIDFREEVILRRS 381 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KARDR H+LVGLAIAVAN+DEV+R+IR SP+ TAR LM R W +D+ L+ L Sbjct: 382 RFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALMARDWPVADVGPLLAL 441 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +DDS I ++ T+ L+E Q R ILELRL RLTGL RD I EL+ + I+E L+IL+S Sbjct: 442 VDDSG-NIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELDEVAARIRELLEILAS 500 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R + ++ EL +V+ ++ +PR + IV+GL D +DE + MVVT++ GYVKR PL Sbjct: 501 HPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMVVTLTRDGYVKRTPL 560 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +RAQ RGG+GRS MR +D V F TH VLFF+S G ++EKVW+LP P A Sbjct: 561 ETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAFREKVWKLPEAGPTA 620 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG++L +L L + E +T ++P P+DE W+NL++VFAT GNVRRN+LSDF + SG Sbjct: 621 RGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRRNRLSDFKNVRASGL 680 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP--ISAIRVFAGRNSVGVRGISLAK 731 IAMKLD D ++ V TC + ++++L T+ G+ +RF + +RVFAGR+S GVRGI LA Sbjct: 681 IAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFAGRDSTGVRGIKLAT 740 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTEEITSLKNDSSVEG 783 GDQVI+++++ H +A +ER Y+K + +RR + + VE Sbjct: 741 GDQVIALSVLRHVEASVEERAAYLKQAAQKRRNGEEAAEAAAEAEASLAEENAEAAEVEI 800 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALV 842 +S ER EL+ +E+ +LTV++ GFGKR+S+Y++R++ R G+GI T+++ + G ++V Sbjct: 801 ALSAERFAELEEQEEILLTVTDGGFGKRSSAYEYRVTGRGGQGI--TNITLSSRTGRSVV 858 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 A FPV D ++LV+D G LIR+P +++R+ R GV++ + E+V S + E + Sbjct: 859 ATFPVRMGDDVMLVTDNGRLIRLPADQVRVTGRQAMGVMMLRLNEAEKVTSCFTVVEQQ 917 >gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 900 Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/897 (51%), Positives = 638/897 (71%), Gaps = 7/897 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I VSI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+ AIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP+ Sbjct: 122 ARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D C+ IDNP++ LD L+E++ GPDFPTG +ILGR+GI++A+ATGRGSIV++G Sbjct: 182 HNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMILGRSGIRSAFATGRGSIVVQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A A ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431 T++ L K R++AH+ +GL IAV ++ EV++IIR + +P A REL+ + W S +I +I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEINTII 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LI D S + DG L+E+QT+AIL+++L RLTGL +D + EL+S+ IKE + L Sbjct: 422 GLISD-SMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IK L +K+ PR+T I E D+E ED I +EDMVVTV+ GY+KRV Sbjct: 481 GSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YR Q RGGKG+ G +++ED +T LF+ +THTS+LFFS+ G VY+ KV++LP+ P Sbjct: 541 KLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLAEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG+AL+NI L+ GE IT IMP P + N +VF T HGN+RRN L+DF I + Sbjct: 601 TARGRALVNIFPLSDGETITNIMPLPSENDENQN--IVFVTAHGNIRRNSLADFHYIPSN 658 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+KLD D ++SV+ C++ + +LL+T LG+ +RF +S +R F RNS GVRGI LAK Sbjct: 659 GKIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAK 718 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ + + Y+K + +RL + I S + + I + Sbjct: 719 NDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNFIDSKLEKTLNDLGIDNKLFL 777 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L + E+FILT++E GFGKRTS+Y++R++NR G GI T++ + G +VA FPV D Sbjct: 778 KLAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGI--TNILTTDRNGNVVASFPVEQGD 835 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I + + +++ S Sbjct: 836 NIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 892 >gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 900 Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/894 (52%), Positives = 636/894 (71%), Gaps = 7/894 (0%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I +SI E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y Sbjct: 2 QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGSVDGDPPA+ RYTE Sbjct: 62 KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RLQ +HFLL+D+ ++TVDFRPNYDG+ EPVVL A +PN+LVNG G+AVGMATNIP Sbjct: 122 ARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++D CV IDN ++ LD L++++ GPDFPTG ILGR+GI++A+ATGRGSIVI+G Sbjct: 182 HNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQG 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE DR+ IV+ EIPYQVNK ++EKI ELV+E++I I ++RDESD+ G RVVI Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L++ A+AD ILNQ+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RR Sbjct: 302 DLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLI 431 T++ L K R++AH+ +GL IAV ++DEV++I+R + +PE A ++L+ + W S +I +I Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTII 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LI D S + DG L+E+QT+AIL+++L RLTGL RD + ELNS+ +KE + L Sbjct: 422 GLISD-SMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFL 480 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IK L V++ PR+T I E D+E ED I +EDMVVTV+ GY+KRV Sbjct: 481 GSEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRV 540 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS YR QRRGGKG+ G +++ED +T LF+ +THTS+LFFS++G VY+ KV++LP+ P Sbjct: 541 KLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEP 600 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG+AL+NI L GE IT IMP P + N +VFAT HGN+RRN L+DF I + Sbjct: 601 TARGRALVNIFPLADGETITNIMPLPSESDESQN--IVFATAHGNIRRNSLADFHYIPSN 658 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+KLD D+++SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI LAK Sbjct: 659 GKIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAK 718 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VISM I+ + + Y+K + +RL + I S + I + Sbjct: 719 NDSVISMTILNGIGVTTETKELYLK-VPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFL 777 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+FILT++E GFGKRTS+Y++R++NR G GI T++ N G +VA FPV +D Sbjct: 778 KLAANEEFILTITENGFGKRTSAYEYRVTNRGGIGI--TNILTTNRNGNVVASFPVEQDD 835 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I+L++DKG LIR+ VN IRIA R+T+GV +F T E+VVS +I + +E Sbjct: 836 NIMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEE 889 >gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi] Length = 902 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + DS+ + +G MY L+ Q +AILE+RL RLTGL +D + EL S+ I E ILS Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILS 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601 Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG++L+NI L+ GE IT++MP P +DE NL VVFAT GN+RRN LSDF + Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQF 780 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ ++ G +VA FPV+ Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885 >gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 924 Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/878 (52%), Positives = 617/878 (70%), Gaps = 9/878 (1%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K Y K AR G+VMGK Sbjct: 1 MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA+ FLLD Sbjct: 61 YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ +DTVDF+PNYD S EP VL A +PN+LVNG GIAVGMATNIPTHN GEV+D +A Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R + IE+ DR+ Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDRQ 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I++TEIPYQVNKA + EKIA+LVR K I I+D+RDESDR G RVVIELKR A+ DV+L Sbjct: 241 AIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 NQLYR+T LQ+ FS NM+AL+ KP L IL+AF+ FREEV++RR ++ LNKARDR Sbjct: 301 NQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLNKARDRG 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+LVGL +AVAN+DEV+ +IR +P+ TAR LM R W+AS++ L++LI D I D Sbjct: 361 HLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVI-ID 419 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 G + L+E Q R ILELRL RLTGL R+ I+ EL + +I E L I+ SR R + ++++E Sbjct: 420 GKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMREE 479 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 LL+ + E+ TPR T I + L D DE I MVVT++ G++KR PL V+R+Q RGG+ Sbjct: 480 LLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGGR 539 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 GR+ R +D + F TH V+FFSS G Y+ KVW LP +P A+G+AL+N+L Sbjct: 540 GRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLPE 599 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 + IT ++P P+DE W +L++ FAT GNVRRN+LSDF I SG IAMKLD D + Sbjct: 600 LGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDSL 659 Query: 685 LSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 + V TC + D+ L TK +C+RF I+ +RVFAGR S GVRGI L +GD VIS+ I+ Sbjct: 660 IGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCILN 719 Query: 743 HADADYDERICYMKHMSAQRRL------ISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 H DA +ER Y++ +A+RR S + E ++ + + G++++ER +EL+ + Sbjct: 720 HVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQQ 779 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ +LTV++ GFG+R+S+YD+R+S R G+GI S +V P D ++LV Sbjct: 780 EEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLV 839 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +D G LIR+PV+++R+ SR GV +F E V+ V Sbjct: 840 TDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICV 877 >gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] Length = 916 Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/918 (51%), Positives = 630/918 (68%), Gaps = 31/918 (3%) Query: 1 MTEHIISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 M++ I + D G + I DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL Sbjct: 1 MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + + G K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF Sbjct: 61 WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS+D DPPA+ RYTE RL K A LL D+ KDTVDF+PNYDG+ QEP VL AR+PN+LVN Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237 G GGIAVGMATNIP HNLGEV+DGC+A +DNP I+L+ L+ II GPDFPT +ILG G Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLILGTAGA 240 Query: 238 KNAYATGRGSIVIRGVSHIEKT-SGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 + AY GRGSI++R +E+ GD R IV+T IPYQV K+ ++EKIAE ++KRI Sbjct: 241 RKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEG 300 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I+D+RDES+R+G RVVI+LKR A+ DV+LNQL+R T QS F NM+A+ G +PE L Sbjct: 301 ISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAIRGGRPELLGLK 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I+++FV FREEV+ RRTK+ L KARDRAH+L+GL IAV NLDEVV+IIR S NP AR Sbjct: 361 DIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARE 420 Query: 416 ELMQRSWNASDIKD---LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 L+ R W +I L++ I+D + T G++ T LSE+Q RAIL+LRL RLT LGRD+ Sbjct: 421 RLLAREWPIGEIAPYIRLVEAIEDDALT-GTE-TYRLSEIQVRAILDLRLHRLTALGRDE 478 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I EL L I E L IL+ R +L G++++EL++VK TPR + I ++DED Sbjct: 479 IGEELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDL 538 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I R+DMVVT++ GY+KR PLS +RAQ RGGKGRSG+ +DED + +F+ STHT VLFF Sbjct: 539 IERDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFF 598 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFA 651 S+ G VY++KVWRLP G RG+ ++N+L SL+QGE I ++ PEDE+ W L+V+FA Sbjct: 599 STAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFA 658 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFP 709 T GNVRRN + F I +GK AMK + DE ++ V ++ +D+LL ++ G+ +RFP Sbjct: 659 TAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFP 718 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGD 768 +R F R S GVRG++L GD+VIS++I+ D +ER Y+++ Sbjct: 719 ADDVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRY----------- 767 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 K + E I+ ER EL KEQF+LTV G+GK +S+Y++R + R G+GI Sbjct: 768 ----APWKAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGI- 822 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++ I G +VA FP DQ++LV+D+ LIR+P++ +R+ R + GV +F+ A + Sbjct: 823 -VNIDNIERNGLVVASFPAARADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVADN 881 Query: 889 ERVVSVERIRESEIVDEA 906 E+VVS R+ E+E D+A Sbjct: 882 EQVVSAVRLAETEGDDDA 899 >gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] Length = 906 Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/882 (51%), Positives = 628/882 (71%), Gaps = 8/882 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G +K Y K A Sbjct: 10 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 70 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNL Sbjct: 130 AKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C IDN DI++ L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG + Sbjct: 190 GEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRGRAE 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +R+ I++TEIPY VNKA ++EKIAE+V+EKRI I+DLRDES++ G R+ IELK Sbjct: 250 IENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVRIFIELK 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQ+Y T LQ+ F V M+AL P+ L ++ AFV+FRE V+ RT Y Sbjct: 310 KDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIY 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLNKARDRAH+L+GL IAV+N+DE++RII+ S +P A++ELM W A +I L+ L+D Sbjct: 370 LLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILPLVKLVD 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + + G +EVQ +AILE+RL RLT + ++ + +L +L EI E L+IL SR+ Sbjct: 430 DKA-MLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRT 488 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL I+K EL+ VK+E TPR T I G D + ED I RE+MVVTV+ GY+KRVPLS Sbjct: 489 RLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVPLSS 548 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKGRSG+ MRDED T +F+ STHT +LFFS++G VY K+++LP+ +PQ +G Sbjct: 549 YRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKG 608 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++NIL L E IT IMP PE++ +NL ++FAT GN+RR+ L F ++ +GKIA Sbjct: 609 RPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKKLQSNGKIA 668 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++LD D+++ V+ C ++ ILL TK G+ +RF + ++RV R S GVRG+ LAK D V Sbjct: 669 IRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKLAKEDSV 728 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM ++ + ++R Y+ + ++RL E N + +++ E+ Sbjct: 729 ISMTVLKGISSTKEDRDAYL-SVPWEQRLEIAKGEAF----NPEELGVSLTAPAILEMAK 783 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E+FILTV+E GFGKR+S+Y +RI++R G GI D++ ++ G +V V PV +D+++L Sbjct: 784 SEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDELML 841 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++ G LIR + +RI R T GV++F E+VVSV I Sbjct: 842 ITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLI 883 >gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] Length = 898 Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/884 (49%), Positives = 641/884 (72%), Gaps = 6/884 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K A Sbjct: 7 VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKAA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AAHFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD C+A IDNPDI D L++I+ GPDFPTG ILG GI++A+ TG+G+I+++G +H Sbjct: 187 GEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ I++ EIPYQVNKA ++E+I ELV+EKRI I DLRDES++ G RV IELK Sbjct: 247 VEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + S V+LNQ+ T L++ FS+N + L+ KP+ +L+ I+ F+ +R+EV+ RRT++ Sbjct: 307 KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRTQF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434 L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + +K++I+L+ Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIELV 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DS + +D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ ++L ++ Sbjct: 427 ADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLGNK 485 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LL ++K L +K +L PR+T I + + ED I +EDMVVTV+ GY+KRV LS Sbjct: 486 ESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVKLS 545 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGR G +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R Sbjct: 546 NYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSR 605 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L+NI L++ E IT++MP PE++ L ++FAT GN+RRN LSDF + +GKI Sbjct: 606 GRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNGKI 665 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGD 733 AM LD D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++ D Sbjct: 666 AMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSEED 725 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 QVISM++++ + D + + Y+K + ++RL+ + I + V+ +S++ + Sbjct: 726 QVISMSVLIAMEVDSETKDLYLK-IPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFMSM 784 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E+FILTV+E GFGKRTS+Y++R + R G G+ ++ N G +++ F V ND I Sbjct: 785 VQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESNDHI 842 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L+++KG LIR+ VN+IRI R+T+GV +F T K E+VVSV ++ Sbjct: 843 MLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKV 886 >gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] Length = 933 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/903 (51%), Positives = 634/903 (70%), Gaps = 13/903 (1%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I D + V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTE--IPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G +K Y K AR G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV Sbjct: 59 RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG Sbjct: 119 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGAS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HN GE++D +A+I+ PD+ LD L++ + GPDFPTG ILGR GI++A Sbjct: 179 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTILGRAGIRSA 238 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRGS++IR + IE+ DR I+VTEIPYQVNKA + E+IA+LVR K++ I+D+R Sbjct: 239 FETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIR 298 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P L +L+A Sbjct: 299 DESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLEA 358 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+V++RR ++ LNKARDRAH+LVGL IAVAN+D V+ +IR +P+ AR LM R Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 W+A+D+ L++LI D I DG ++L+E Q R ILELRL RLTGL RD I+ EL+ + Sbjct: 419 GWDAADVAPLLELIHDEGNVI-VDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 477 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 + I + L+I++SR R + +++ EL+S++ EL TPR T I + D DE I MVV Sbjct: 478 AVRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVV 537 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ G++KR PL V+RAQ RGG+GR+ R +D + F TH VLFFSS G Y+ Sbjct: 538 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYR 597 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 EKVWRLP SP A+G+AL+N+L + IT ++P P+DE W NL++VFAT G+VRRN Sbjct: 598 EKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRN 657 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAG 718 +LSDF I SG IAMKL+ D ++ V TC + D+ L T+ +C+RF I+ +RVFAG Sbjct: 658 RLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITS 774 R S GVRGI LA+GD V S+ ++ H DA +ER Y++ +A+RR + +T+EIT+ Sbjct: 718 RGSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITA 777 Query: 775 LKNDSSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +D+ + + ++ ER EL+ E+ +L VS GFG+R+S+YD+R+S R G+GI Sbjct: 778 -GDDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMT 836 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S A+VA PV + ++LV+D G LIR+P+ ++RI SR GV +F E V Sbjct: 837 FSANKRGNAVVATLPVLEGTDVMLVTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEV 896 Query: 892 VSV 894 SV Sbjct: 897 TSV 899 >gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] Length = 898 Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/884 (49%), Positives = 641/884 (72%), Gaps = 6/884 (0%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K A Sbjct: 7 VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKAA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AAHFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD C+A IDNPDI D L++I+ GPDFPTG ILG GI++A+ TG+G+I+++G +H Sbjct: 187 GEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ I++ EIPYQVNKA ++E+I ELV+EKRI I DLRDES++ G RV IELK Sbjct: 247 VEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + S V+LNQ+ T L++ FS+N + L+ KP+ +L+ I+ F+ +R+EV+ RRT++ Sbjct: 307 KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRTQF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434 L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + +K++I+L+ Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIELV 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DS + +D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ ++L ++ Sbjct: 427 ADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLGNK 485 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LL ++K L +K +L PR+T I + + ED I +EDMVVTV+ GY+KRV LS Sbjct: 486 ESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVKLS 545 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGR G +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R Sbjct: 546 NYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPTSR 605 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L+NI L++ E IT++MP PE++ L ++FAT GN+RRN LSDF + +GKI Sbjct: 606 GRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNGKI 665 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGD 733 AM LD D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++ D Sbjct: 666 AMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSEED 725 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 QVISM++++ + D + + Y+K + ++RL+ + I + V+ +S++ + Sbjct: 726 QVISMSVLIAMEVDSETKDLYLK-VPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFMSM 784 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E+FILTV+E GFGKRTS+Y++R + R G G+ ++ N G +++ F V ND I Sbjct: 785 VQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESNDHI 842 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L+++KG LIR+ VN+IRI R+T+GV +F T K E+VVSV ++ Sbjct: 843 MLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKV 886 >gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum marinum IMCC1322] gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 900 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/890 (50%), Positives = 615/890 (69%), Gaps = 61/890 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ MM+ +W K K ARI Sbjct: 19 TISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARI 78 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG YHPHG+++IY+A+ RMAQD+S+RL L++GQGNFGSVDGDP AA RYTE RL + Sbjct: 79 VGDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLAR 138 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AA LL D+ K+TV+F NYD + EP VL A YPN+LVNG GIAVGMATNIP HN GE Sbjct: 139 AAESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGE 198 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+ C A ++NP+I + L EI+ GPDFPTGA+I+GR GI+ AY TGRGSI++R + ++ Sbjct: 199 VIAACEAYVNNPEITTEELTEIVPGPDFPTGALIMGRHGIREAYRTGRGSIIMRARAEVQ 258 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DRE I+V EIPYQVNKA +LE+I E+VR+K + I+D+RDESDR G R+VIE+KR Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRD 318 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ DV+LN+LYR+T LQ+ F VNM+A+N +P + L +++AF FR++VV++RT +LL Sbjct: 319 AAGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQMGLKDVIEAFCEFRKDVVIKRTTFLL 378 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NK+RDRAH+L GL +A+A++DE++ +I+ +P+ ETAR EL +W A ++ I LIDD Sbjct: 379 NKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDDP 438 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + + D LSEVQ RAILELRL RLTG+ RD + E L +I + LDIL S +R+ Sbjct: 439 GHAV-VDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRV 497 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 +I EL + ++ L RRT I + L D +DED I +EDMVVTVSH GY+KRVPLS+YR Sbjct: 498 SQVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYR 557 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKGR+G+ RDEDFVT LF+ +THT +LFF+S G VY+ K ++LP +PQ+ GKA Sbjct: 558 AQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKA 617 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L + E I T+MP P+DESSW +L V+FAT GNVRRN LSDF I R+GKIAMK Sbjct: 618 MVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMK 677 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 + DE++ V C ++D+L+ T+ G+ +RF +A+RVF GR+S GVRGI L D+V+S Sbjct: 678 MQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVS 737 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M+I+ + +Y Sbjct: 738 MSIIADPENEY------------------------------------------------- 748 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 IL+V+E G+GKRT D+R S R G+G+ ++S N G ++A F V + DQ++LV+ Sbjct: 749 --ILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRN--GQVMASFTVVEEDQLMLVT 804 Query: 858 DKGTLIRVPV-----NEIRIASRATKGVVIFSTA--KDERVVSVERIRES 900 ++G +IR+ V + IRIASR T GV +F A DE+VVS I ES Sbjct: 805 NQGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVSAGLIHES 854 Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 6/103 (5%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++ + G +R + DF R+GK K+ + LV V P ND+D +++ + Sbjct: 648 VMFATASGNVRRNNLSDFTNIKRNGK-----IAMKMQDGDELVGVIPCNDDDDVLMATRN 702 Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901 G IR N +R+ R + GV +RVVS+ I + E Sbjct: 703 GKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSMSIIADPE 745 >gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] Length = 912 Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/883 (53%), Positives = 618/883 (69%), Gaps = 11/883 (1%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SVSI EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K Y K AR Sbjct: 25 SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKSYRKSARP 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 85 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A +LL D+ KDTV+++ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 PAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I+ PD+ + L++ + GPDFPTG ++LGRTG + AY GRGS++IR + +E Sbjct: 205 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRTGARKAYLEGRGSVIIRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR IVV EIPYQVNKA M+EKIAE VREK+I I+ ++DESDR G RVV+ELKR Sbjct: 265 EIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V++NQLYR+T LQ+ F NM+ALNG +PE+ TL L F+ FREEVV RRT YLL Sbjct: 325 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREEVVARRTAYLL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+HVL GLA+AV N+DEVV IR S + AR +LM R W A DI I LIDD Sbjct: 385 RKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLMTRRWPAQDILPYIALIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAIL+LRL RLT +G ++ +EL L +IKE LDIL SR R+ Sbjct: 445 THTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLDILGSRDRI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL V++ PRRT IV+ DMEDED I REDMVVTV+ GY+KR PL+ +R Sbjct: 505 MSIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG SG ++++D VT LF+ +THT +LFF++ G YK K WRLP G ++GKA Sbjct: 565 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTSKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +INIL + QG I I+P DE W+ L +VFAT G VRRN LSDF + +GKIAMK Sbjct: 625 IINILPIPQGVSIAAILPIDRDEKDWSELQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 684 Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + + +++ + ++D++L T G+ +RFP + +RVF R+SVGVRG+ L D+ Sbjct: 685 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSTDVRVFNSRSSVGVRGVRLTGDDK 744 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM+++ H +A DER+ Y+K RR ++G ++ + +++ E + ++ Sbjct: 745 VVSMSVIRHFNATSDERVAYLK----MRRAMAGLADDAEIEEEETTGESVEID--YAKMS 798 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E ILT++ +G GK +SS+D+ + R G G++A D K G +VA FPV +DQI+ Sbjct: 799 AAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGPIVASFPVEMDDQIM 856 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L + KG IRVPV I SR+ GV +F+T K E VVSV I Sbjct: 857 LATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWI 899 >gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 880 Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/876 (51%), Positives = 629/876 (71%), Gaps = 7/876 (0%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RAIPD+RDG KPVHRRIL+ M + G + K Y K ARI G+VMGKYHPHG+AAI Sbjct: 1 MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 YD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDF Sbjct: 61 YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 RPNYDG+ EPVVL A +P++LVNG G+AVGMATNIP+HNLGE++D C+ +DNP++ L Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 D L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G +HIE DR+ IV+ EIPY Sbjct: 181 DELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI+L+R A A ILNQ+ T L Sbjct: 241 QVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTPL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 +S FSVN + LN +P +L I++AF+ FR+EV++RRT++ L K R++AH+ +GL IA Sbjct: 301 RSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLSEV 452 V ++DEV++IIR + +P A REL+ + W S +I +I+LI DS+ + DG L+E+ Sbjct: 361 VLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL-KDGVYRLTEL 419 Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 Q +AIL+++L RLTGL +D + EL+S+ IKE + L S +L+ IK L +K+ Sbjct: 420 QIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRF 479 Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 PR+T I E D+E ED I +EDMV+TV+ GY+KRV LS YR QRRGGKG+ G ++ Sbjct: 480 AVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLK 539 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 +ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+ P ARG+AL+NI L +GE IT Sbjct: 540 EEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITN 599 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692 IMP P + N +VF T +GN+RRN L+DF I +GKIA+KLD D+++SV+ C + Sbjct: 600 IMPLPSENDENQN--IVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNE 657 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 + + L+T+ G+ +RF +S +R F RNS GVRGI LAK D VISM I+ + + Sbjct: 658 IDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKE 717 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 Y+K + +RL + I S + + I E +L + E+FILT++E GFGKRT Sbjct: 718 LYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRT 776 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 S+Y++RI+NR G GI T++ + G +VA FPV D I+L++DKG LIR+ VN+IRI Sbjct: 777 SAYEYRITNRGGVGI--TNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIRI 834 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 A R+T+GV +F T E+VVSV +I + + +++ S Sbjct: 835 AGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSIS 870 >gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] Length = 902 Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/887 (51%), Positives = 633/887 (71%), Gaps = 9/887 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K Sbjct: 4 GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G GI++A+A+GRG+IV+RG + Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H E+ R+ I++ EIPYQVNKA ++E+I ELV+EK+I +ADLRDES++ G RV IEL Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR + V+LNQL T L++ FS+N + L KP +L I+ FV FR+EV+VRRT+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 + L K R++AH+ +G+ IAV N+DEVV II+ S + A L +R W S DI+++I+L Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + DS+ + +G MY L+ Q +AILE+RL RLTGL ++ + EL S+ I E ILS Sbjct: 424 VSDSTGVV--EGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILS 481 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + S L+ I+KQ LL K +L PR T I + + +++ E I +E+MVVTV+ G+VKRV Sbjct: 482 TDSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVK 541 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 LS YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P Sbjct: 542 LSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPS 601 Query: 613 ARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG++L+NI L+ GE IT++MP P +DE NL VVFAT GN+RRN LSDF + Sbjct: 602 SRGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPS 661 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SGKIAM L D+++S C + +LL+++LG+ +RF +S +R F GR S GVR I L+ Sbjct: 662 SGKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLS 721 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQVISM+++ +A + + Y+K + + R+ + + ++ E I E+ Sbjct: 722 AGDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHAIEREQF 780 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E+ EQFILTV+E GFGKRTS+Y++RI++R G G+ ++ G +VA FPV+ Sbjct: 781 LEMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGV--VNILTTVRNGNVVASFPVSQT 838 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 DQ++L++DKG LIR+ V +IR+ R+T+GV +F T K E+VVSV + Sbjct: 839 DQVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATV 885 >gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ] gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ] Length = 906 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/891 (50%), Positives = 639/891 (71%), Gaps = 9/891 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + +K Y K Sbjct: 4 GVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYKKA 63 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGSVDGDPPA+ RYTE R Sbjct: 64 ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTEAR 123 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L +AAHFLL+D+ +DTVDFRPNYD + QEPVVL A +PNVLVNG GG+AVGM+TNIP+HN Sbjct: 124 LAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPSHN 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++D V IDNP++ L+ LM +I GPDFPTG VI+G GIK+A+ATGRG+I+I+G + Sbjct: 184 LGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQGKT 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 HIE+ R+ I++ EIPYQ NKA ++E+I ELV+EK+I ++DLRDES++ G RV IEL Sbjct: 244 HIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ ++ V+LNQL T L++ FS+N + L+ +P +LI I++ FVAFR+EV+VRRT+ Sbjct: 304 KKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRRTR 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDL 433 Y L K R+RAH+ +G+ IAV N+DE+V IIR S + A L +R+W+ S +++ +I+L Sbjct: 364 YRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRGMIEL 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + DS+ I G L+ Q +AILE+RL RLTGL + + EL S+ I E ILS+ Sbjct: 424 VSDSTGVI-EGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTKILST 482 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S L+ ++++ LL VK + TPRRT I E D++ E I RE+MVVTV+ G+VKRV L Sbjct: 483 DSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVKRVKL 542 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ+RGGKGR +++ED T LF+V THTSVLFFS++G VYK KV++LP+G P + Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPAS 602 Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG++L+NI L +GE IT++MP P+ + ++ VVFAT GN+RRN L+DF + + Sbjct: 603 RGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQYVPSN 662 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAM L D+++S C + +LL++++G+ +RF + +R F GR S GVR I LA+ Sbjct: 663 GKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKLAE 722 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE-EITSLKNDSSVEG-NISEER 789 GDQVISM+++ ++A + R Y+K + R+ + +++ E + +EG +SEE Sbjct: 723 GDQVISMSVLHGSEASSEVREAYLK-IPVDSRIKAAESDGESIGKRVSGMLEGLQLSEET 781 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ KEQFILTV+E GFGKRTS+Y++R + R G G+ + N G +VA F V Sbjct: 782 FVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARN--GKVVASFSVAH 839 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 DQ++L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV + +S Sbjct: 840 TDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALVIDS 890 >gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas] gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas] Length = 898 Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/893 (49%), Positives = 636/893 (71%), Gaps = 25/893 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K A Sbjct: 7 VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 KAAHFLL+D+ +DTVDFRPNYD + EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL Sbjct: 127 AKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D C+A IDNP+I D L+ I+RGPDFPTG ILG GI++A+ TG+G+I+I+G +H Sbjct: 187 GEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGKTH 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ I++ EIPYQVNKA ++E+I EL++EK+I I DLRDES++ G RV IELK Sbjct: 247 LEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + S VILNQ+ T L++ FS+N + L+ KP+ +L I+ FV +R+EV+ RRT++ Sbjct: 307 KQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434 L K R+RAH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + ++++I+L+ Sbjct: 367 RLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMIELV 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 DS +I D L+ VQ ++ILE++L RLT L ++ + +L S+ IK+ ++L ++ Sbjct: 427 ADSK-SIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELLKNK 485 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LL +IK +K +L PRRT I + + ED I +EDMVVTV+ GY+KR LS Sbjct: 486 ESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIKRAKLS 545 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ+RGGKGR G +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R Sbjct: 546 NYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSR 605 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L+NI L++ E IT++MP P++ L +VFAT GN+RRN LSDF + +GKI Sbjct: 606 GRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVPSNGKI 665 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM LD+ D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+ D Sbjct: 666 AMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSDDN 725 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VISM+++L D D +++ Y+K + +R+ +K + V G I++ C +L Sbjct: 726 VISMSVLLAMDIDSEKKDLYLK-VPLDKRM---------CVKEEGVVNGGIAKILC-DLG 774 Query: 795 LK----------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L+ EQFILTV+E GFGKRTS+Y++R + R G G+ + N G +VA Sbjct: 775 LEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARN--GNVVAS 832 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 FPV ND I+L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV +I Sbjct: 833 FPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKI 885 >gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake] gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake] Length = 898 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/895 (49%), Positives = 637/895 (71%), Gaps = 9/895 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + SVSI E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K A Sbjct: 7 VISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE RL Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AAHFLL+D+ +DTVDFRPNYD + EPVVL A +PN+LVNG GG+AVGM+TNIP+HNL Sbjct: 127 ARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD C+A IDNP+I D L+ I+RGPDFPTG ILG GI++A+ TG+G+I+++G +H Sbjct: 187 GEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGKTH 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ I++ EIPYQVNKA ++E+I ELV+EK+I I DLRDES++ G RV IELK Sbjct: 247 LEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + S V+LNQ+ T L++ FS+N + L KP+ +L+ I+ FV +R EV+ RRT++ Sbjct: 307 KQVSHQVVLNQILGLTPLRTTFSINTLVLENNKPKVMSLLDIISTFVEYRREVLTRRTQF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLI 434 L K R++AH+ +G+ IAV N+D+V+ IIR S + A + L++ W+A + ++++I+L+ Sbjct: 367 RLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMIELV 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D+ ++ D L+ VQ ++ILE++L RLT L ++ + +L S+ I++ ++L ++ Sbjct: 427 ADTK-SLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLKNK 485 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LL +IK L+ VK +L PRRT I + + ED I +EDMVVTV+ GY+KR LS Sbjct: 486 EALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRAKLS 545 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGGKGR G +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P +R Sbjct: 546 NYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPTSR 605 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L+NI L++ E IT++M P++ +L +VFAT GN+RRN L+DF + +GKI Sbjct: 606 GRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALADFQYVPSNGKI 665 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM LD D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+ D Sbjct: 666 AMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSQDN 725 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VISM+I+L D +++ Y+K + +R+ + I + + + ++ + Sbjct: 726 VISMSILLAMDIGSEKKDLYLK-VPLDKRIAVKEEGFIGTGIVKILADLGLDQDTFMTMV 784 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 EQFILTV+E GFGKRTS+Y++R + R G G+ ++ G +VA FPV ND I+ Sbjct: 785 QNEQFILTVTENGFGKRTSAYEYRTTLRGGVGV--VNILTTTRNGNVVASFPVESNDHIM 842 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVDE 905 L++DKG LIR+ V++IRI R+T+GV +F T K E+VVSV +I +SEI D+ Sbjct: 843 LITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEIDDD 897 >gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594] gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594] Length = 931 Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/893 (49%), Positives = 602/893 (67%), Gaps = 36/893 (4%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G + Y K A+I Sbjct: 7 IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAKIV 66 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ RYTE RL K Sbjct: 67 GDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLAKV 126 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A+ LLDDL KDTVDF NYDGS +EP VL AR+PN+LVNG GGIAVGMATN+P HNLGEV Sbjct: 127 ANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEV 186 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGC+A I NP I + LM+ I GPDFPT +ILG+ G + AY TGRGS+++R IE+ Sbjct: 187 IDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEIEE 246 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 GDR+ IV T IPYQV K+ ++EKIA+ +EKRI I+D+RDES R+G RVV++LKR A Sbjct: 247 KRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKRDA 306 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 S +V+LNQ++RYT Q+ F NM+A+ G +PE TL I++AFV+FREEV+ RRTK+ LN Sbjct: 307 SPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFELN 366 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+RAHVL+GL +AV+NLDEVV +IR S NP+ AR +L + W DI I LI+ Sbjct: 367 KARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEAIE 426 Query: 439 YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 T +G Y LSE Q +AIL+LRL RLT LGRD+I +EL L EI+E L IL+ R +L Sbjct: 427 PTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRGKL 486 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 G+++ EL+ +KDE TPR + I +EDED I REDMVVTV+H GY+KR PL+ +R Sbjct: 487 FGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTPLATFR 546 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ RGGKGRSG+ +DED V +LF+ STH VLFF++LG VY+ KVW+LP GSP +G+ Sbjct: 547 AQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEGSPTTKGRP 606 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L L ER+T ++ PEDE SW L +VFAT+ G VRRN + F + GK AM Sbjct: 607 MVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYAMG 666 Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + D ++ VE +++ +I L + G+ +RF + R R +GVRG++L +V Sbjct: 667 FVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDAKV 726 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SMA++ + D + R Y++ ++ ++ E + ++ +++ Sbjct: 727 VSMAVLDRLEQDMETREAYLR----------------AAIWKNNDAEHTLDSDKVAQMEE 770 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVAVFPVNDNDQI 853 E+FILT++ G+GK +S+Y++R R G+G+ T S G +VA FPV Q+ Sbjct: 771 GEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQL 830 Query: 854 ILVSDKGTLIRVPVNEIR--------------IASRATKGVVIFSTAKDERVV 892 +LV+D+ LIR+P+ E R + R + GV +F AK E +V Sbjct: 831 MLVTDQAKLIRMPI-EFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIV 882 >gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] Length = 946 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/905 (49%), Positives = 610/905 (67%), Gaps = 38/905 (4%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T + I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + G + + K A+ Sbjct: 19 TRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASNEGGFVAGRPFRKSAK 78 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+VMG YHPHG+AAIYDALARM Q+WSLR+ LI+GQGNFGS+D DPPA+ RYTE RL Sbjct: 79 IVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLA 138 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A+ LLDDL KDTVDF NYDGS +EP VL AR+PN+LVNG GGIAVGMATNIP HNLG Sbjct: 139 RVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNLG 198 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DGC A +DNP I + L EII GPDFPT +ILG+TG + AY TGRGSI+ R I Sbjct: 199 EVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLILGKTGARAAYTTGRGSILQRARHEI 258 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ GDR+ IV+T IP+QV K+ ++EKIAE ++KRI I+D+RDES RQG RVV++LKR Sbjct: 259 EERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISDIRDESSRQGVRVVVDLKR 318 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 ASA+V+LNQ++RYT QS F NM+A++G +PE TL ++AF+ FREEV+ RRTKY Sbjct: 319 DASAEVVLNQIWRYTPAQSSFPANMLAISGGRPEVLTLREFIQAFITFREEVITRRTKYE 378 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDL 433 LNKARDRAH+L+GL +AV+NLDEVV +IR +P P AR L+ + W DI L++ Sbjct: 379 LNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLLAKEWPIGDIAQYIALVEA 438 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 I+ S G GT LSE Q +AIL+LRL RLT LGRD+I +EL L + I+E L IL+ Sbjct: 439 IEPSDEQTG--GTYRLSERQVKAILDLRLHRLTALGRDEIGDELKLLSLSIEEYLSILAD 496 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R +L G+++ EL ++ TPR + I ++DED I RE+MVVTV+H GY+KR PL Sbjct: 497 RVKLYGVMRGELEEIRAAYATPRVSEIAPAWDGIDDEDLIEREEMVVTVTHGGYIKRTPL 556 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +RAQ RGGKGRSG+ +DED V +LF+ STH VLFF++ G VY+ KVW+LP G PQ Sbjct: 557 DTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGRVYRMKVWKLPEGGPQT 616 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G+ ++N+L L ER+T ++ PEDE+ W L +VFAT+ G VRRN + F + +GK Sbjct: 617 KGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMVRRNSMDAFTNVPSNGK 676 Query: 674 IAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 AM DS D ++ VE T++ +I L + G+ +RF + R R +GVRG+ L + Sbjct: 677 YAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLKE 736 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 G +V+SMA++ + D + R Y++ E + +ND +++ E+ + Sbjct: 737 GQKVVSMAVLDAGERDTEVREAYLR------------AAEWKNNENDYTLDA----EKVE 780 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGALVAVFPVND 849 E+ E+FILT++ +G+GK +S+Y++R R G G+ S + G +VA FPV Sbjct: 781 EMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVASFPVKH 840 Query: 850 NDQIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVER 896 Q++LV+D+ LIR+P+N I+ R + GV IF+ AK E++V Sbjct: 841 GSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQIVGAAL 900 Query: 897 IRESE 901 I E+E Sbjct: 901 IDETE 905 >gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354] Length = 941 Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/909 (48%), Positives = 613/909 (67%), Gaps = 38/909 (4%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF + G + Y K A+I Sbjct: 20 IDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVAGRPYRKSAKIV 79 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG++AIYDALARM Q WS+R+ LI+GQGNFGS+D DPPA+ RYTE RL+K Sbjct: 80 GDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMDPDPPASMRYTEARLEKV 139 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A+ LLDDL KDTVDF NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP HNLGEV Sbjct: 140 ANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGGIAVGMATNIPPHNLGEV 199 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGC+A I NP I + L+E I GPDFPT +ILG++G ++AY TGRGSI++R +E Sbjct: 200 IDGCLAFIANPAITSEELIEYIPGPDFPTAPLILGQSGARSAYLTGRGSIMMRARHEVET 259 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 DR+ IV+T IPYQV K ++EKIAE ++KRI I+D+RDES R+G RVV++LKR A Sbjct: 260 GRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIRDESSREGVRVVVDLKRDA 319 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 S +V+LNQL+RY+ Q+ F NM+A+ G +PE L I++AF++FRE+V+ RRTK+ LN Sbjct: 320 SPEVVLNQLWRYSPAQASFPANMLAIRGGRPEVLALRDIIQAFISFREQVITRRTKFELN 379 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD---LIDLID 435 KARDRAH+L+GL +AV+N+DEVV IIR + NP AR +L+++ W DI L++ I+ Sbjct: 380 KARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLRKEWPIGDIAQYIALVEAIE 439 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SS G GT LSE Q +AIL+LRL RLT LGRD+I +EL L +I+ L IL+ R Sbjct: 440 PSSDEHG--GTYRLSERQVKAILDLRLHRLTALGRDEIGDELKELATKIEYYLSILADRR 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L ++++EL +++D+ TPR + I ++DED I +EDMVVTV+H GY+KR PL Sbjct: 498 KLYQVMREELQAIRDQYATPRMSEIAPAWDGVDDEDLIEQEDMVVTVTHGGYIKRTPLHA 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGGKGRS + +DED V ++F+ STH VLFF++ G VY+ KVW+LP GSP +G Sbjct: 558 FRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRVYRLKVWKLPEGSPTTKG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++N+L L + ER+T ++P P+DE+ W+ L +VFAT+ G VRRN + F +I +GK A Sbjct: 618 RPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVFATEQGMVRRNSMDAFTRIPSNGKYA 677 Query: 676 MKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 M DS D ++ V ++ +I L + G+ +RF + R R +GVRG+ L +GD Sbjct: 678 MGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMKLKEGD 737 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+A++ D + R Y++ ++ ++ + + E QE+ Sbjct: 738 KVVSLAVLHPLSHDMETREAYLR----------------GAVWKNNDTDHTLDTELAQEM 781 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-RATDVSKINEIGALVAVFPVNDNDQ 852 + E+FILT++ G+GK +S+Y++R R G+GI + S G +VA FPV Q Sbjct: 782 EENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPVVASFPVRHGMQ 841 Query: 853 IILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++LV+D+ LIR+P++ I R + GV +F AK E++V RI E Sbjct: 842 LMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQIVGAARIDE 901 Query: 900 -SEIVDEAE 907 ++ +EAE Sbjct: 902 DADPENEAE 910 >gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium] Length = 890 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/887 (48%), Positives = 625/887 (70%), Gaps = 14/887 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + +EM+ SYL YA++VI+ RA+PD+RDG K VHRRIL+ + ++G + K + K A Sbjct: 10 IKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEVMGKYHPHG++AIY+ + RMAQD+S+ + LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 70 LIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTESRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L DL +TV FRPNYDGS QEP VL R P++L+NG GIAVGMATNIP HNL Sbjct: 130 AKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D C A+++NP ++L +ME ++GPDFPTG ILG +GI NA+ TGRGSIV+RG + Sbjct: 190 GELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMRGKAS 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ GD+E IVVTEIPYQVNKA ++EKI EL R+K + I ++RDES+R G R+VIE+K Sbjct: 250 VEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVIEIK 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++ VILNQLY++T LQ FS N++AL P+ L L F+ FR +V+VRRT+Y Sbjct: 310 RDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIVRRTRY 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARD+AH+L+G A+A++++D+V+ +I+ + + ++A LM +W+A+ IK + L+ Sbjct: 370 FLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYLALLQ 429 Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 G Y LSE+Q AIL+LRL +LTG+ +++I+++L S I+E +DIL Sbjct: 430 GPQ---AESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGKP 486 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ I+ E ++K + TPRR+ I+ D+EDED I E+MVVT+S GY+KRVPLS Sbjct: 487 ERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPLS 546 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ RGGKGRSG+ M++ED+V D+ + +TH +LFF+++G VY+ V +LPIG+PQA+ Sbjct: 547 TYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQAK 606 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+A+IN+L + + E+IT+I+ ++ + L +F T G VRRN +SDF +I +GK Sbjct: 607 GRAIINVLPIEKDEKITSILDVSKEMDDASTL--LFITSKGQVRRNAVSDFERIQSNGKR 664 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM L+ + +++V+TC +N +LL T+ G +RF + +RVF+GR S GVRGI LA D Sbjct: 665 AMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDDT 724 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +IS +++ + D ER Y++ +A+R I G+TE+ D++VEG +S+ER EL+ Sbjct: 725 IISASVLEGFNVDPAERALYLRARAAERG-IQGETED-----QDTTVEGALSDERLLELQ 778 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 EQ+ILT+++ GFGKRTS Y++R + R G G +S N G +V FPV DQI+ Sbjct: 779 EHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKN--GHVVNAFPVIPQDQIM 836 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 L+++KG L+R VN+IRIA R T+GV++ KDERVV+V RI E+E Sbjct: 837 LITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETE 883 >gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 854 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/850 (51%), Positives = 606/850 (71%), Gaps = 7/850 (0%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G + K Y K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS Sbjct: 1 MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDFRPNYDG+ EPVVL A +PN+LVNG Sbjct: 61 IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 G+AVGMATNIP+HNLGE++D C+ +DNP++ LD L+E++ GPDFPTG ILGR+GI++ Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRS 180 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 A+ATGRGSIV++G +HIE DR+ IV+ EIPYQVNK ++EKI ELV+EKRI I ++ Sbjct: 181 AFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEI 240 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVI+L+R A A ILNQ+ T L+S FSVN + LN +P +L I++ Sbjct: 241 RDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIE 300 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 AF+ FR+EV++RRT++ L K R++AH+ +GL IAV ++DEV++IIR + +P A REL+ Sbjct: 301 AFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLN 360 Query: 420 RSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + W S +I +I+LI DS+ + DG L+E+Q +AIL+++L RLTGL +D + EL+ Sbjct: 361 KEWKTSNEINTIIELISDSASFL-KDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELS 419 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 S+ IKE + L S +L+ IK L +K+ PR+T I E D+E ED I +EDM Sbjct: 420 SMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDM 479 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+TV+ GY+KRV LS YR QRRGGKG+ G +++ED +T+LF+ +THTSVLFFS++G V Sbjct: 480 VITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRV 539 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ KV++LP+ P ARG+AL+NI L +GE IT IMP P + N +VF T +GN+R Sbjct: 540 YRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQN--IVFTTAYGNIR 597 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 RN L+DF I +GKIA+KLD D+++SV+ C + + + L+T+ G+ +RF +S +R F Sbjct: 598 RNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKS 657 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RNS GVRGI LAK D VISM I+ + + Y+K + +RL + I S Sbjct: 658 RNSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLK-VPLAKRLGTAINNSIDSKLEK 716 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + I E +L + E+FILT++E GFGKRTS+Y++RI+NR G GI T++ + Sbjct: 717 TLNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGI--TNILTTSRN 774 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA FPV D I+L++DKG LIR+ VN+IRIA R+T+GV +F T E+VVSV +I Sbjct: 775 GNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIE 834 Query: 899 ESEIVDEAES 908 + + +++ S Sbjct: 835 DPDSTEDSIS 844 >gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1] gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1] Length = 933 Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/887 (49%), Positives = 600/887 (67%), Gaps = 21/887 (2%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ + YVK Sbjct: 18 GYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASKLGNFVAGRPYVKS 77 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I G+VMG +HPHG+ AIYDALAR+ Q WS+R+ L++GQGNFGS D DPPA+ RYTE R Sbjct: 78 AKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNFGSPDPDPPASMRYTEAR 137 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + + LLDDL KDTVDF NYDG QEP VL AR+PN+LVNG GGIAVGMATN+P HN Sbjct: 138 LARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVNGAGGIAVGMATNVPPHN 197 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DGC+A ++NP I + L+E I GPDFPT +ILG +G K AY TGRGSI++R Sbjct: 198 LGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLILGTSGAKAAYTTGRGSILMRCRH 257 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE GDRE IV T IPYQV +A ++EKIAE ++KRI I+D+RDES+R G R+VI+L Sbjct: 258 EIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGISDIRDESNRDGTRIVIDL 317 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A+V+LNQ++R+T QS F NM+A+ G +PE L ++AF++FREEV+ RRTK Sbjct: 318 KRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLMLRDFIQAFISFREEVITRRTK 377 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKAR+RAH+L+GL +AV+NLDEVV IIR +PNP TAR L+ + W DI I L+ Sbjct: 378 FELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERLLTKEWPIGDIAQYIRLV 437 Query: 435 DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + + +G Y LS Q +AIL+LRL RLT LGRD+I +EL L +I+E L IL+ Sbjct: 438 EAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDELKELAEKIEEFLAILAD 497 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R +L ++++EL ++ TPR + I ++DED I R+DMVVTV+ GY+KR PL Sbjct: 498 RVKLYEVMREELEEIRATYATPRISEIAPAWDGLDDEDLIERDDMVVTVTLDGYIKRTPL 557 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S +RAQ RGGKGR+G+ +DED + ++F+ STH VLFFS+ G VY+ KVW+LP G P Sbjct: 558 STFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAGKVYRLKVWKLPEGGPTT 617 Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 RG+ +IN+L +L+ E I T++P PEDE W L VVFAT GNVRRN + F I +G Sbjct: 618 RGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKGNVRRNSMDAFTNIPSNG 677 Query: 673 KIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 K AMK D S D ++ V +D++L +K G+ +RF +R F R S GVRG+ LA Sbjct: 678 KFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDVREFTSRTSTGVRGMKLA 737 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD+V+S++ + +ER Y+K K + + +++ ER Sbjct: 738 DGDEVVSLSTLGATGTTPEEREQYIK---------------FAPWKGEKEGDPDLTPERY 782 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 LK KEQFILTV G+GK +SSY++R + R G+G+ ++ I+ G++VA F V Sbjct: 783 DALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGV--VNIDNIDRNGSVVASFVVQTG 840 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +Q++LV+D+ LIR+ + +R+ R T GV +F+ K+E VVS +I Sbjct: 841 EQLMLVTDQAKLIRIGLESLRVMGRNTAGVRLFTVGKNEHVVSAVKI 887 >gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] Length = 848 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/888 (46%), Positives = 619/888 (69%), Gaps = 46/888 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + + +I+DEM++SYL+YA++VI+ RA+PD RDGLKPVHRRI++ M + G +W+K++ K Sbjct: 4 KNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQFRK 63 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L+EGQGNFGS+DGD AA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYTET 123 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 +L K + FL+ D+ K+TV+F+ NYD + EPVVL A++PN+LVNG GGIAVGMATNIP H Sbjct: 124 KLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIPPH 183 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DG +A +DN I + +M+ I GPDFPTG +ILG+ IKN Y GRGSI IRG Sbjct: 184 NLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIILGKNEIKNGYEKGRGSIKIRGE 243 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ S DR+ I++ +PYQVNK ++EKIA L+R+K++ IADLRDES+++G R+VIE Sbjct: 244 IEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIVIE 303 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L++G + ++I+NQLY+++ L+S F N +A+N KPE L ++ FV+FRE+ +++RT Sbjct: 304 LRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKKPELLNLKQFIEIFVSFREKTIIKRT 363 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KA+DR+H+L+GL IA+ N+DE++ IIR S P A+ L++++WN K ++ Sbjct: 364 LFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSKLNKNI 423 Query: 434 IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 ++ + SD Y LS+ Q +AIL+LRL +LT +G D+I NEL+ L I + IL+ Sbjct: 424 LNINEL---SDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKILN 480 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ L+ +IK EL+ +K++ TPR+T+IV+ + +E ED I +E ++VTV++ GY+KR P Sbjct: 481 DKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRTP 540 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 ++ +AQ+RGG+G+ G+V R+EDFVT LF V+T T VLFFS+ G VYK K W++P GS Q Sbjct: 541 ITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGSNQ 600 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ++GK+L N+L ++ +++IMP PE+E+ W++L +VF TK G +R+N L DF I +G Sbjct: 601 SKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQSNG 660 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAMKLD DEI+SV+ D+++ + G+ +R IR+F GR+S GV+G++L Sbjct: 661 KIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLKNN 720 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VIS++I+ +IS D +E+ S Sbjct: 721 DRVISLSIL-------------------NPNIISSDKDEMKS------------------ 743 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 KE+FILT++E G+GKR+S+Y+FR + R G+GI ++S G + A FP+ +D Sbjct: 744 ---KEEFILTITENGYGKRSSAYEFRETGRGGQGI--INISTTERNGNVAASFPIKSDDD 798 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 I+LV+ KG +IRV VNEIR+A R T+GV IF T+ DE+VV+ R+ ++ Sbjct: 799 IMLVTSKGQMIRVKVNEIRVAGRNTQGVRIFKTSSDEKVVTAVRLADN 846 >gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] Length = 877 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/881 (47%), Positives = 607/881 (68%), Gaps = 16/881 (1%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 +K I ++TDEM+ SYL+YA++VI+ RA+PD RDGLKPVHRRI+F M + G +W+K++ Sbjct: 3 DKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQFR 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L L++GQGNFGS+DGD AA RYTE Sbjct: 63 KSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A FL+ D+ K+TVDF+ NYD + EPVVL A+YPN+LVNG GIAVGMATNIP Sbjct: 123 TRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV++G + IDN +I + LM++I GPDFPTG +I+G+ I Y GRGSI IRG Sbjct: 183 HNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIIIGQNDIIPGYEKGRGSIKIRG 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E+ S D++ IV+ +PYQVNK ++EKIAEL+R+K+I I+DLRDES++ G R+ I Sbjct: 243 EIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVRIAI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +K+ S +I+NQLY+++ LQ+ F N +A+N KPE L +K FV FRE+V+ +R Sbjct: 303 TVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKKPELLNLKQFIKIFVDFREKVLTKR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA+DR H+L+GL I++ N+DEV+ IIR S +P A+ L+++ W+ K D Sbjct: 363 TLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSKIDKD 422 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 +++ + + + LS+ Q +AILELRL +LT +G ++I +EL L I + IL+ Sbjct: 423 VLEVNE--LSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKILN 480 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L +IK EL +K + PRRT++V + +++ ED I E ++VTV++ GY+KR P Sbjct: 481 DKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTP 540 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L+ RAQ+RGGKG++G+V R+EDFV+ LF VST T VLFFSS G VY+ K W++P GS Sbjct: 541 LTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNT 600 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ++GKAL NI + +I++I+P P D+S+W + +++F T +G +R+N + DF I +G Sbjct: 601 SKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQANG 660 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 KIAMKL+ D+I+SV+ + +D++L T G+ +R S IR+F GR+S G++GI+L Sbjct: 661 KIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNN 720 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VIS+ ++ H +E Y+K L+N IS ++ +E Sbjct: 721 DKVISLTVLNHVTTTSEETKAYIKRTRKD------------DLENTDDTNFEISTKKYEE 768 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 LKL+E+FILT++E G+GKR+SSY+FR S R G+GI S+ N G + A + V ++D Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERN--GNIAASYSVKNDDD 826 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 I+L+++KG +IR V++IRI R T+GV IF K+E+VVS Sbjct: 827 IMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVS 867 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 4/104 (3%) Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLG 703 +++ T++G +R+ +F + R G+ + + S + I + + ++DI+L T G Sbjct: 775 FILTITENGYGKRSSSYEFRESGRGGQGIINIISSERNGNIAASYSVKNDDDIMLITNKG 834 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 Q +R +S IR+ GRN+ GVR + K ++V+S + + AD Sbjct: 835 QMIRCAVSDIRI-TGRNTQGVRIFKVEKNEKVVSSVCLTDSVAD 877 >gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] Length = 849 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/887 (46%), Positives = 601/887 (67%), Gaps = 51/887 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M + G +W+K++ Sbjct: 8 KDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQF 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT Sbjct: 68 RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP Sbjct: 128 ETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++DG +A+I+N DI + LM+ I GPDFPTG VI+G+ IK Y GRGS IR Sbjct: 188 PHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E RE++V+T +PYQVNK+ + E+IA+LVREK+I I D+RDES+R+G RV Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I+L+ G + I LY+ TS++S F N +A+ KP+ L L F+ FRE+VV++ Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICNLKEFLTNFLTFREDVVIK 367 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 +TK+ L KA DRAH+L+GL+++V NLD++++IIR S P+ A++ L+ W + LI Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427 Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++D + +Y LS+ Q AILELRL +LT LG ++I E+ L IK I Sbjct: 428 SLVEDK-----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKI 482 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++S+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I +E +++TV+ GY+KR Sbjct: 483 INSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTLQGYIKR 542 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS + Q+RGGKG+SG+ RDED V V+THTSVLFFS+ G VYK K W++P GS Sbjct: 543 GALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGS 602 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK+L NIL L + I++IMPFP++ES NL +VFAT G VR+N L DF IN Sbjct: 603 TTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINS 662 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+KLD D+I+ VE C + D++L+TK G+C+RF +R+F GR+S G++GI L+ Sbjct: 663 AGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELS 722 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+++S++I + E+I K D+ +G Sbjct: 723 PNDEIVSLSIT--------------------------NKEKI---KKDTKSDG------- 746 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +F+L+++E G+GK+T + ++R++NR GKGI S N G++ + FPV + Sbjct: 747 -------RFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GSICSSFPVIEG 797 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D +++ ++KG +IRV V EIR A R T+GV I + DE+VVS +I Sbjct: 798 DDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKI 844 >gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] Length = 849 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/887 (46%), Positives = 601/887 (67%), Gaps = 51/887 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M + G +W+K++ Sbjct: 8 KDKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQF 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT Sbjct: 68 RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP Sbjct: 128 ETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++DG +A+I+N DI + LM+ I GPDFPTG VI+G+ IK Y GRGS IR Sbjct: 188 PHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAGYNVGRGSFKIR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E RE++V+T +PYQVNK+ + E+IA+LVREK+I I D+RDES+R+G RV Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I+L+ G + I LY+ TS++S F N +A+ KP+ L L F+ FRE+VV++ Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTNFLTFREDVVIK 367 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 +TK+ L KA DRAH+L+GL+++V NLD++++IIR S P+ A++ L+ W + LI Sbjct: 368 KTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLI 427 Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++D + +Y LS+ Q AILELRL +LT LG ++I E+ L IK I Sbjct: 428 SLVEDK-----KEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKI 482 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++S+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I +E +++TV+ GY+KR Sbjct: 483 INSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVIITVTLQGYIKR 542 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS + Q+RGGKG+SG+ RDED V V+THTSVLFFS+ G VYK K W++P GS Sbjct: 543 GALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGS 602 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK+L NIL L + I++IMPFP++ES NL +VFAT G VR+N L DF IN Sbjct: 603 TTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINS 662 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+KLD D+I+ VE C + D++L+TK G+C+RF +R+F GR+S G++GI L+ Sbjct: 663 AGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELS 722 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+++S++I + E+I K D+ +G Sbjct: 723 PNDEIVSLSIT--------------------------NKEKI---KKDTKSDG------- 746 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +F+L+++E G+GK+T + ++R++NR GKGI S N G++ + FPV + Sbjct: 747 -------RFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GSICSSFPVIEG 797 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D +++ ++KG +IRV V EIR A R T+GV I + DE+VVS +I Sbjct: 798 DDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKI 844 >gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] Length = 764 Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/720 (56%), Positives = 524/720 (72%), Gaps = 4/720 (0%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI++ M + G+ +K Y K A+ Sbjct: 25 SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGD AA RYTE RL K Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+ DL K+TV+F NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D C A+I+NPD+ + L+E I GPDFPTG ++LGR G + AY GRGS+++R + +E Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLGRAGARKAYLEGRGSVIMRAKTRVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I++ EI YQVNKA+M+EKIAE VREK+I IA ++DESDR G RVVIELKR Sbjct: 265 EIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V++NQLYR+T +Q+ F NM+ALNG +PE+ TL L F+ FRE+VV RRT +LL Sbjct: 325 ATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAFLL 384 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R+H+L GLA+AV N+DEVV IR S + AR +LM R W A I I LIDD Sbjct: 385 RKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALIDDP 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 ++T DGT LSE Q RAILELRL RLT +G ++ +EL L +IKE L+IL SR R+ Sbjct: 445 THTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERI 504 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 + II EL VKD+ PRRT IV+ DM+DED I REDMVVTV+ GY+KR PL +R Sbjct: 505 MSIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 564 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG SG+ ++ED VT LF+ +THT +LFF++ G VYK K WRLP GS ++GKA Sbjct: 565 SQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKA 624 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++NIL + G I IMP DE+ W++L VVFAT G VRRNKLSDF + R+GKIAMK Sbjct: 625 IVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMK 684 Query: 678 LD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + + +++ + ++D++L T G+ +RFP + +RVF R SVGVRGI L GD+ Sbjct: 685 FEDDHAETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKL-NGDE 743 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 15/138 (10%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVS 804 Y++ + ++ R++S ++E+ +K+ +V G++ +E +L +E ++TV+ Sbjct: 494 YLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDE---DLIAREDMVVTVT 550 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 G+ KRT DFR R GKG+ + E + +F N + Q++ + G + + Sbjct: 551 SGGYIKRTPLVDFRSQRRGGKGVSGM---QTKEEDVVTTLFVANTHTQLLFFTTDGMVYK 607 Query: 865 VPVNEIRIASRATKGVVI 882 + + SR +KG I Sbjct: 608 LKTWRLPQGSRTSKGKAI 625 >gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 859 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/886 (46%), Positives = 602/886 (67%), Gaps = 39/886 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ I +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +W+K++ Sbjct: 8 KDNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQF 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+DGDP AA RYT Sbjct: 68 RKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + +L+DD+ K+T+ F+ NYD + +EP VL A+YPN+LVNG GGIAVGMAT+IP Sbjct: 128 ETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++G +A+IDN DI + LM+ + GPDFPTG VI+G+ IK+ Y GRGS IR Sbjct: 188 PHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHGYNNGRGSFKIR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E RE++V+T IPYQVNK+ + E+IA+LVREK+I I D+RDES+R+G RV Sbjct: 248 GEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I+L+ G + I QLY+ T ++S F N +A+ KP+ TL L F++FRE++V++ Sbjct: 308 IDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSNFLSFREDIVIK 367 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 +TK+ L KA +RAH+L+GL+++V NLD++++IIR S PE A++ +++ W + + LI Sbjct: 368 KTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLI 427 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ G LSE Q AILELRL +LT LG ++I E+ L I I+ Sbjct: 428 SLVEGKK----GKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKII 483 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SS+ LL +I +EL ++K++ PRRT+I++ +L+ + E+ I ++ +++TV+ GY+KR Sbjct: 484 SSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVTLQGYIKRG 543 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L + Q+RGGKG+SG+ RD+D V V+THTSVLFFS+ G VYK K W++P GS Sbjct: 544 SLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGSS 603 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++GK+L NIL L + I++IMP PE+E+ N ++FAT G VR+N L DF IN S Sbjct: 604 SSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSINAS 663 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIAMKLD+ D+I+ V+ C + DI+L+TK G+C+RF +RVF GR+S G++GI LA Sbjct: 664 GKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRSSKGIKGIELAP 723 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQ++S++++ D D + K+D S Sbjct: 724 NDQIVSLSVI---DNDK-------------------TKKNGKKSKDDKS----------- 750 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E+K KE+F+L++SE G+GK+TS D+R++NR GKGI S N G + + FPV + D Sbjct: 751 EIKAKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRN--GNITSSFPVFEGD 808 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +I++ ++KG +IRV V EIR A R T+GV I + +E+VVS +I Sbjct: 809 EILISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKI 854 >gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] Length = 885 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/896 (48%), Positives = 593/896 (66%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 8 ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+V EIPYQVNKA ++EKIAE V+EK+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE+A+REL+ R W + +++ Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEMLAATG 427 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL D Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 485 GELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P+S Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP S +RG+ ++NIL LN+ ERIT I+P + ED+ +VV AT G V++ Sbjct: 605 QLPQASRGSRGRPIVNILPLNENERITAILPVTAYEEDK------FVVMATAGGIVKKIA 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + Sbjct: 659 LTEFSRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAM-GRLA 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA L D + DE +G+ EE++ + ++ Sbjct: 718 TGVRGIKLA-----------LTNDLNDDES--------------AGEIEEVSDDNTEETL 752 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + NI + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G + Sbjct: 753 DLNIDKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKV 810 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V D DQI+L++D GTL+R V+E+ I R T+GV + T+++E VVS+ERI Sbjct: 811 VAATQVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERI 866 >gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700] gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700] Length = 885 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/893 (48%), Positives = 586/893 (65%), Gaps = 45/893 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 8 ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+V EIPYQVNKA ++EKIAE V+EK+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+R H+L GLAIA+AN+D ++ +IR +PNPETA+REL+ R W + D++ Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLAAAG 427 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL D Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 485 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ ++NIL L + ERIT I+P E + +V+ AT G V++ L++ Sbjct: 605 QLPQASRGSRGRPIVNILPLGENERITAILPVTAYEE---DKFVIMATAGGVVKKIALTE 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GV Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAM-GRLATGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA L D DE ++ +S + EE L D V Sbjct: 721 RGIKLA-----------LTNDLSDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 764 VPKNNGE--------ILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAA 813 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D DQI+L++D GTL+R V+E+ I R T+GV + T++DE VVS+ERI Sbjct: 814 TQVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERI 866 >gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 887 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/904 (48%), Positives = 591/904 (65%), Gaps = 48/904 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 8 ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+V EIPYQVNKA ++EKIAE V++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ R W + D++ Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADMLAASG 427 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL D Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ ++NIL LN+ ERIT I+P E + +VV AT G V++ L++ Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKIALTE 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GV Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA L D DE ++ +S + EE L D V Sbjct: 721 RGIKLA-----------LTNDLSDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 764 IPKNNGE--------ILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +NDQI+L++D GTL+R V+E+ I R T+GV + T++ E VVS+ERI E VD Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870 Query: 905 EAES 908 + ES Sbjct: 871 DEES 874 >gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] Length = 869 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/897 (46%), Positives = 609/897 (67%), Gaps = 39/897 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++ WNK Y K A Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + FLLDDL +++VDFR NYD S EPVVL A++PN+LVNG G+AVGMATN+PTHNL Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C ++N ++ D L+++I+GPDFPTG +I+G GIK ++ TG+GSI+IR +H Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFETGKGSIIIRSKTH 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+T R+ I+V E+PYQVNKA ++E IA LV+EKR+ I+DLRDES+++G RVVIELK Sbjct: 244 FEETE-TRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGAS +V+LNQL++ T LQ+ +S NM+ L+ +P +L IL AF+A R+EV+ RRT++ Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR++A+VLV L +A+ N+DEVVRI++ S + ETA + L + W I + ++L+ Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWT---IDEELELLV 419 Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 ++ I Y LS Q++AILE+++ R+T + + E+++ +KEC IL S Sbjct: 420 ETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSE 479 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553 + L +I QEL +K + R++ I++ + + +ED I RE +VVT ++ GY+KRV + Sbjct: 480 AVLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQI 539 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR QRRGGKGR ++ ED + +F++STH +LFFSS G VYK K ++LPIG PQ+ Sbjct: 540 SNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQS 599 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+AL+NI L E IT+I+P S NL +F T G V+RN +SDF + +GK Sbjct: 600 RGRALVNIFDLADDESITSILPL--KSSDAENL--IFLTAQGKVKRNSMSDFAYVPANGK 655 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+KL+ D ++SV+T E+ I ++T+ G+C+RF + +RV R+S GV+ I+L K D Sbjct: 656 VAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKDD 715 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 IS++I+ +++ YMK +R ++N + E Sbjct: 716 SAISLSILNRRILSPEDKAEYMKTKFFER------------IQNPENHE----------- 752 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQF+LTV+E G+GK TSSY++RI+NR G GI S+ N G +V+ F V ++ I Sbjct: 753 ---EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHI 807 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LV+++G +IR+ + I + R T+GV +FS +ERV SV + E E D++E+TE Sbjct: 808 MLVTNRGQVIRIEASNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863 >gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] Length = 873 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/908 (46%), Positives = 585/908 (64%), Gaps = 70/908 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLER 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + G D YL+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 ELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK L+ Y AQRRGGKG++ M+DEDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ARGK ++NIL L + ERIT I+P E E+ + +V AT G V++ L+DF Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTDF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L D ++ V+ NDI+L +K G+ VRF +R GR + GVR Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D V+S+ IV H D D Sbjct: 722 GIKLAESDNVVSL-IVPHNDGD-------------------------------------- 742 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 743 --------------VLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EI 902 V + D+ +++++ GTL+R V E+ R T+GV + T +DE+VV ++RI E +I Sbjct: 787 QVLEGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDI 846 Query: 903 VDEAESTE 910 +++AE TE Sbjct: 847 IEDAEITE 854 >gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] Length = 877 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/903 (46%), Positives = 582/903 (64%), Gaps = 69/903 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK +INIL L +GERIT I+P DE S ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIINILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + D++++++D GTL+R V+E+ R T+GV + TA+DE VV ++RI E E VD Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVD 845 Query: 905 EAE 907 E Sbjct: 846 LPE 848 >gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] Length = 869 Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/897 (45%), Positives = 606/897 (67%), Gaps = 39/897 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++ WNK Y K A Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + FLLDDL +++VDFR NYD S EPVVL A++PN+LVNG G+AVGMATN+PTHNL Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C ++N ++ D L+++I+GPDFPTG +I+G GIK ++ +GRGSI+IR +H Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+T + I+V E+PYQVNKA ++E IA LV+EKR+ I+DLRDES+++G RVVIELK Sbjct: 244 FEETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGAS +V+LNQL++ T LQ+ +S NMV L+ +P +L IL AF+A R+EV+ RRT++ Sbjct: 303 RGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTEF 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR++A+VLV L +A+ N+DEVV I++ S + E A + L + W I + ++L+ Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHW---AIDEELELLV 419 Query: 436 DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 ++ I Y LS Q++AILE+++ R+T + + E+++ +KEC IL S Sbjct: 420 ETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSE 479 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553 + L +I +EL +K + R++ I++ + + +ED I RE +VVT ++ GY+KRV + Sbjct: 480 AVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVHI 539 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR QRRGGKGR ++ ED + +F++STH +LFFSS G VYK K ++LPIG PQ+ Sbjct: 540 SNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQS 599 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+AL+NI L E IT+I+P S NL +F T G V+RN +SDF + +GK Sbjct: 600 RGRALVNIFDLADDESITSILPL--KSSDAENL--IFLTAQGKVKRNSMSDFAYVPANGK 655 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A++L+ D ++SV+T E+ + ++T+ G+C+RF + +RV R+S GV+ I+L K D Sbjct: 656 VAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDD 715 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 IS++I+ +++ YMK +R ++N + E Sbjct: 716 NAISLSILNKQVLSPEDKAEYMKTKFFER------------IQNPENHE----------- 752 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 EQF+LTV+E G+GK TSSY++RI+NR G GI S+ N G +V+ F V ++ I Sbjct: 753 ---EQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNHI 807 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LV+++G +IR+ N I + R T+GV +FS +ERV SV + E E D++E+TE Sbjct: 808 MLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863 >gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans] Length = 887 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/904 (47%), Positives = 589/904 (65%), Gaps = 48/904 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 8 ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+V EIPYQVNKA ++EKIA+ V++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +N+VAL+ +P+ L +++AFV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ W + D++ Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAASG 427 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL D Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ ++NIL LN+ ERIT I+P E + +VV T G V++ L++ Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMTTAGGIVKKIALTE 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GV Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA L D + DE ++ +S + EE L D V Sbjct: 721 RGIKLA-----------LTNDLNDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I + + IL ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 764 IPKNNGE--------ILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +NDQI+L++D GTL+R V+E+ I R T+GV + T++ E VVS+ERI E VD Sbjct: 814 AQVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870 Query: 905 EAES 908 + ES Sbjct: 871 DEES 874 >gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 887 Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/904 (47%), Positives = 590/904 (65%), Gaps = 48/904 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 8 ITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N DI +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 GEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+V EIPYQVNKA ++EKIA+ V++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q +N+VAL+ +P+ L +++AFV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTLGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ W + D++ Sbjct: 368 ELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAASG 427 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL D Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 428 VDAARPEDL--DEQYGI-RDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 485 GKLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ ++NIL LN+ ERIT I+P E + +VV AT G V++ L++ Sbjct: 605 QLPQASRGARGRPIVNILPLNENERITAILPVAAYEE---DKFVVMATAGGIVKKITLTE 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GV Sbjct: 662 FSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA L D + DE ++ +S + EE L D V Sbjct: 721 RGIKLA-----------LTNDLNDDESAVEIEDVS------DDNAEETLDLNIDKVVSLV 763 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 764 IPKNNGE--------ILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAA 813 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +NDQI+L+++ GTL+R V+E+ I R T+GV + T++ E VVS+ERI E VD Sbjct: 814 AQVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICE---VD 870 Query: 905 EAES 908 + ES Sbjct: 871 DEES 874 >gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20] gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 896 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEADESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 DENSEALDNVESTE 891 >gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] Length = 895 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/913 (47%), Positives = 592/913 (64%), Gaps = 44/913 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRSHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N +I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L +V+TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + + ++ D I +++ A +S DT+ + SL Sbjct: 724 VRGIKLATTE--------ISSEEIEDAEIVEIENEEADESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEHDED 877 Query: 900 --SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 ENSEALDNVESTE 890 >gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 876 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/908 (46%), Positives = 587/908 (64%), Gaps = 71/908 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIVDAYKTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ ++R +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + I D YL+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEAQFGI-RDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + ILSS RL+ +I++EL VK++ RRT I D++ ED I +ED+VVT+SH Sbjct: 485 AELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLITQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P E E+ + +V AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVREYEA---DKFVFMATADGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ +NDI+L +K G+ VRF +R GR + GV Sbjct: 662 FSRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA+ D+V+S+ IV H + D Sbjct: 721 RGIKLAESDKVVSL-IVPHNEGD------------------------------------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 743 ---------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERN--GSVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEI 902 D D+ +++++ GTL+R V E+ R T+GV + TA+DE+VV ++RI E E+ Sbjct: 786 VQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEDEQVVGLQRIDEPEEEL 845 Query: 903 VDEAESTE 910 +++AE E Sbjct: 846 IEDAELVE 853 >gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] Length = 900 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/910 (47%), Positives = 595/910 (65%), Gaps = 42/910 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +NK +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N + ++ LM I GPDFPTGA+I GR GI++AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +EKT +REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R+W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D + +G +G +LSE Q RAILELRL RLTGL + I +E L EI Sbjct: 426 AGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P+ E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFSTDK-FIFMATASGIVKKVCLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I SG I +KL DE++ V+ ++I+L + G+ VRF A+R GR + G Sbjct: 665 AFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSS 780 VRGI LA D +L D + E + + + ++ + + + SL + D + Sbjct: 724 VRGIKLATSD-------ILADDIEDTEIVEIEQEETEDNTAVNLNIDRVVSLVIPRADIA 776 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 G+ ILTV+E G+GKRT ++ I +R+ KG+ + V++ N G Sbjct: 777 TSGD---------------ILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERN--GK 819 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V++ DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E Sbjct: 820 VVAAVQVDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSLERLCEP 879 Query: 901 EIVDEAESTE 910 E E ES E Sbjct: 880 E---EDESNE 886 >gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 896 Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/914 (47%), Positives = 585/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEADESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 E +D ESTE Sbjct: 878 DENGEALDNVESTE 891 >gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 896 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 DENSEALDNVESTE 891 >gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305] gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305] Length = 885 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/896 (47%), Positives = 589/896 (65%), Gaps = 42/896 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I++ I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ + D SD++G +VIE Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A A+V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG +LSE Q RAILELRL RLTGL + I +E +L +EI Sbjct: 426 AGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF + +R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + +D D I +++ DTEE +S+ Sbjct: 724 VRGIKLATTEI---------SDEVEDVEIETVENE---------DTEETSSV-------- 757 Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 N++ ++ L + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G + Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA DE VVS+ERI Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871 >gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida] Length = 874 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/909 (46%), Positives = 587/909 (64%), Gaps = 71/909 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTVD+ PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + +E I+VTEIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VI Sbjct: 246 AEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RR Sbjct: 306 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W ++ +++ Sbjct: 366 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + G D YL+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 486 AELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L+ Y AQRRGGKG++ M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 546 EGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P E E+ + +V AT G V++ L+D Sbjct: 606 QLPLASRTARGKPIVNILPLEENERITAILPVKEYEA---DKFVFMATADGTVKKTPLTD 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L + D ++ V+ NDI+L +K G+ VRF +R GR + GV Sbjct: 663 FSRPRSAGIIAVNLRNEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA+ D V+S+ IV H D D Sbjct: 722 RGIKLAESDNVVSL-IVPHNDGD------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 744 ---------------VLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901 V + D+ +++++ GTL+R V E+ R T+GV + T ++E+VV ++RI E + Sbjct: 787 VQVLEGDEFMMITNGGTLVRTRVREVSRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDD 846 Query: 902 IVDEAESTE 910 I+++AE TE Sbjct: 847 IIEDAEITE 855 >gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 896 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 DENSEALDNVESTE 891 >gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] Length = 888 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/898 (47%), Positives = 588/898 (65%), Gaps = 37/898 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +K YVK Sbjct: 6 KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A I+N I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +R Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E TS REQIVVTE+PYQVNK ++EKIAELVR+KRI I+ + D SD++G +VIE Sbjct: 246 ASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV RRT Sbjct: 306 IKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R W+ ++ +++ Sbjct: 366 VFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D + G DG YLSEVQ RAILELRL RLTGL + I +E L +EI Sbjct: 426 AGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLVEIS 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL +K E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L +GE RIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF +A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + + DA+ + + + ++ T+++ SL Sbjct: 724 VRGIKLATTEISVD-------DAEEVDIETVENEEAEEASSVNLTTDKVVSLV------- 769 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G +VA Sbjct: 770 ---------IPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKVVA 818 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V +NDQI+L++D GTL+R VNE+ + R T+GV I TA+DE VVS+ERI E E Sbjct: 819 AVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876 >gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755] gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755] Length = 888 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/898 (47%), Positives = 588/898 (65%), Gaps = 37/898 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +K YVK Sbjct: 6 KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A I+N I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +R Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E TS REQIVVTE+PYQVNK ++EKIAELVR+KRI I+ + D SD++G +VIE Sbjct: 246 ASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +K A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV RRT Sbjct: 306 IKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R W+ ++ +++ Sbjct: 366 VFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D + G DG YLSE Q RAILELRL RLTGL + I +E L +EI Sbjct: 426 AGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLVEIS 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL +K E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGE--RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L +GE RIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF +A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + + DA+ + + + ++ T+++ SL Sbjct: 724 VRGIKLATTEISVD-------DAEEVDIETVENEEAEEASSVNLTTDKVVSLV------- 769 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N G +VA Sbjct: 770 ---------IPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKVVA 818 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V +NDQI+L++D GTL+R VNE+ + R T+GV I TA+DE VVS+ERI E E Sbjct: 819 AVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876 >gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] Length = 876 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/893 (46%), Positives = 572/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEEQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL SV++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK +INIL L +GERIT I+P E ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIINILPLEEGERITAILPVSEFSPEK---FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTADDENVVGLQRI 838 Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EIT+ +D +E EL +E ++T+S +G+ K D+ R GKG AT Sbjct: 519 EITAASHDIDME---------ELIAREDVVVTLSHEGYVKYQILSDYEAQRRGGKGKSAT 569 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887 K+ E + + N +D I+ S +G R+ V ++ +ASR +G + I + Sbjct: 570 ---KMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEE 626 Query: 888 DERVVSVERIRE 899 ER+ ++ + E Sbjct: 627 GERITAILPVSE 638 >gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202] gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202] Length = 885 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/901 (47%), Positives = 588/901 (65%), Gaps = 52/901 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I++ I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ + D SD++G +VIE Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A A+V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG +LSE Q RAILELRL RLTGL + I +E +L +EI Sbjct: 426 AGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADK-FIFMATASGTVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF + +R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE--EITSLKNDSSV 781 VRGI LA + IS + E EI +++N+ + Sbjct: 724 VRGIKLATTE-------------------------------ISDEVEDVEIETVENEDAE 752 Query: 782 EG---NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 E N++ ++ L + + ILTV++ G+GKRT+ ++ + +R+ KG+ + V++ N Sbjct: 753 ETSSVNLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN 812 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V +NDQI+L++D GTL+R VNE+ + R T+GV I TA DE VVS+ER Sbjct: 813 --GKVVAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLER 870 Query: 897 I 897 I Sbjct: 871 I 871 >gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 896 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/914 (47%), Positives = 587/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 AFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 DENSEALDNVESTE 891 >gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 896 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/914 (47%), Positives = 585/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G D YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M++ DF+ L I +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA D +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTDISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D ESTE Sbjct: 878 DENSEALDNVESTE 891 >gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] Length = 878 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/893 (46%), Positives = 573/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L GERIT I+P DE S + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329] Length = 878 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/893 (46%), Positives = 573/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L GERIT I+P DE S + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116] gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116] Length = 878 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP + ARGK ++NIL L +GERIT I+P DE S ++ AT G V++ L+ Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01] gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01] Length = 879 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP + ARGK ++NIL L +GERIT I+P DE S ++ AT G V++ L+ Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E] gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E] Length = 888 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/904 (47%), Positives = 590/904 (65%), Gaps = 40/904 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G +NK YVK A Sbjct: 8 ITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNKSYVKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 Q+ LL DL K+TVDF PNYDG P VL + P++LVNG GIAVGMATNIP HNL Sbjct: 128 QRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A +DN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R + Sbjct: 188 GEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYVRAKAS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E REQI++TEIPYQVNKA ++EKI ELVR+K+I IA + D S+++G R+ I++K Sbjct: 248 VEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIRLEIDIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +NMVAL+ +P F L I++AFV R EVV RRT Y Sbjct: 308 RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEAFVKHRREVVTRRTVY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434 L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W+ ++ +++ Sbjct: 368 ELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAPMLEAAG 427 Query: 435 ------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 D + +G+ DG +LSE Q RAILELRL RLTGL + I E + + ++I E Sbjct: 428 VDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEILLQIGEL 487 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 + IL+S RL +I++EL VK + RRT I D+ ED I +ED+VVT+SH GY Sbjct: 488 IRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVVVTLSHEGY 547 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PL+ Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y KV++LP Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLYWLKVYQLP 607 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG+ ++NIL L ERIT I+P S + +VV AT G V++ L++F + Sbjct: 608 EASRGARGRPIVNILPLEDNERITAILPVA---SYDEDKFVVMATACGIVKKTALTEFSR 664 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GVRGI Sbjct: 665 PRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAM-GRTATGVRGI 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA L D DE + EEI+ + +++ NI + Sbjct: 724 KLA-----------LTNDISDDESAV--------------EIEEISDDNAEDTLDLNIDK 758 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E ILT ++ G+GKRT+ ++ +R+ KG+ + VS+ N G +VA V Sbjct: 759 VVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERN--GKVVAATQV 816 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906 + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE VVS+ER+ E E + +A Sbjct: 817 EETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVAEPEEDEFDA 876 Query: 907 ESTE 910 ES E Sbjct: 877 ESPE 880 >gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 896 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M++ DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTEISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D E+TE Sbjct: 878 DENSEALDNVENTE 891 >gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] Length = 879 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/893 (46%), Positives = 574/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG YL+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEDQYGI-RDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP + ARGK ++NIL L +GERIT I+P DE S ++ AT G V++ L+ Sbjct: 605 QLPHATRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 896 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/914 (47%), Positives = 586/914 (64%), Gaps = 45/914 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +N+ +VK Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVD+ PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQI+VTE+PYQVNKA ++EKIAELV++K+I I+ ++D SD++G +VIE Sbjct: 246 ASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I +E +L EI Sbjct: 426 AGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL VK E RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M++ DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ E++I+L + G+ VRF A+R GR + G Sbjct: 665 SFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI LA + +++ A+ +S DT+ + SL Sbjct: 724 VRGIKLATTEISSEEIEEAEI--------VEIENEEAEESSVSLDTDRVVSLV------- 768 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E ILTV++ GFGKRT ++ + +R+ KG+ + V++ N G +VA Sbjct: 769 ---------IPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKVVA 817 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---- 899 V + DQI+L++D GTL+R V E+ + R T+GV I TA DE VVSVER+ E Sbjct: 818 AVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPDDE 877 Query: 900 ---SEIVDEAESTE 910 SE +D E+TE Sbjct: 878 DENSEALDNVENTE 891 >gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] Length = 880 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 576/894 (64%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A+I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 + L KARDRAH+L L++A+AN+DE++ +IR +P P A+ L+ R W+ ++ ++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D Y I DG +L+E Q +AILELRL RLTGL + I +E +L E Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I++EL +V++ RRT I + D++ E+ I +ED+VVT+S Sbjct: 484 IAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK ++NIL L +GERIT I+P E N ++ AT G V++ L Sbjct: 604 YQLPLASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + G Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAM-GRTASG 719 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L + DQV+S+ + S EG Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + T+ DE VV ++RI Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTSDDENVVGLQRI 838 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ EE+ +++ + + + + +EL +E ++T Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ K D+ R GKG AT + + I L+ N +D I+ S +G Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ +ASR +G V I + ER+ ++ + E Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSE 638 >gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus] Length = 878 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/893 (46%), Positives = 572/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFP A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L GERIT I+P DE S + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNILPLEDGERITAILPV--DEFSADK-FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ T +DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRI 838 >gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] Length = 867 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/896 (46%), Positives = 578/896 (64%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH +L DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR + Sbjct: 188 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ RSW ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y + +G +L+E Q +AIL+LRL +LTGL + + E L +I+ Sbjct: 428 GDDAARPEWLEPQYGV-HEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELLKQIE 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL +++D + PRRT I E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITENTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + YV AT G V++ L DF Sbjct: 607 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTPLQDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+V+S+ I EG+I Sbjct: 723 GIKLMDNDKVVSLII--------------------------------------PRGEGHI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV+E GFGKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 745 ---------------LTVTENGFGKRTEEAEYPTKSRATQGVISIKVSERN--GHVVGAI 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E+E Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 843 >gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] Length = 877 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/895 (46%), Positives = 576/895 (64%), Gaps = 69/895 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+S+ Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIAREDVVVTLSN 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 AGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L +GERIT I+P DE S ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPV--DEFSPEK-FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 840 >gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] Length = 898 Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/907 (47%), Positives = 586/907 (64%), Gaps = 42/907 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK +VK Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G +VIE Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I E L EI Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + G Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L+ + +I D EE ++ SSV Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758 Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ ++R L + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAES 908 DE ES Sbjct: 877 D-DENES 882 >gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] Length = 898 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/907 (47%), Positives = 586/907 (64%), Gaps = 42/907 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK +VK Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G +VIE Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I E L EI Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + G Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L+ + +I D EE ++ SSV Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758 Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ ++R L + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAES 908 DE ES Sbjct: 877 D-DENES 882 >gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z] gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z] Length = 890 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/894 (47%), Positives = 579/894 (64%), Gaps = 39/894 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT VSI DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G NK YVK A Sbjct: 8 ITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKAYVKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 QKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A IDN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R + Sbjct: 188 GEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYVRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I REQIVVTEIPYQVNKA ++EKI EL+REK+I I+ + D S+++G R+ I++K Sbjct: 248 IVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRLEIDIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +NMVAL+ +P+ F L I++AFV R EVV RRT Y Sbjct: 308 RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPKLFNLKQIIEAFVKHRREVVTRRTVY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434 L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ R+W ++ +++ Sbjct: 368 ELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPMLEAAG 427 Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 DD G +G YLSE Q RAILELRL RLTGL + I +E + ++I E Sbjct: 428 VDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILVQIGEY 487 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L IL+S RL +I++EL VK + RRT I D+ ED I +ED+VVT+SH GY Sbjct: 488 LHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVVVTLSHEGY 547 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PL+ Y AQRRGGKG+S M+++DF+ L + +TH ++L FSS G +Y KV++LP Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLP 607 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG+ ++NIL L + ERIT I+P S + +V+ AT G V++ L++F + Sbjct: 608 EASRGARGRPIVNILPLEENERITAILPVA---SYDEDKFVLMATAGGIVKKTALTEFSR 664 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVRGI Sbjct: 665 PRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAM-GRTATGVRGI 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA L D +E + EE++ + S++ NI + Sbjct: 724 KLA-----------LTNDLSDEESAV--------------EIEEVSEDNSQESLDLNIDK 758 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA V Sbjct: 759 VVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAATQV 816 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + DQI+L++D GTL+R V E+ + R T+GV + TA+DE+VVS+ER+ E + Sbjct: 817 EEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSLERVAEPD 870 >gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] Length = 880 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/900 (45%), Positives = 574/900 (63%), Gaps = 69/900 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVVTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQFGI-RDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARGK ++NIL L + ERIT I+P E ++ AT G V++ L Sbjct: 605 QLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEK---FIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + GV Sbjct: 662 FANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ LA DQV+S+ + S EG+ Sbjct: 721 RGMKLADDDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ R+ +G+ + VS+ N G++V Sbjct: 743 ---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GSVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E E D Sbjct: 786 VQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESD 845 >gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222] gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222] Length = 890 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/894 (46%), Positives = 573/894 (64%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ ++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D Y I DG +L+E Q +AILELRL RLTGL + I +E +L E Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARGK ++NIL L +GERIT I+P E N ++ AT G V++ L Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L D ++ V+ +DI+L +K G+ VRF +R GR + G Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L + DQV+S+ + S EG Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ EE+ ++++ + + + + +EL +E ++T Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ K D+ R GKG AT + + I L+ N +D I+ S +G Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ ASR +G V I + ER+ ++ + E Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638 >gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 882 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/901 (46%), Positives = 582/901 (64%), Gaps = 72/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 NEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAE 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E + SG RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 248 VEADEKSG-RETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA++N+D ++ +IR +PNP A+ L+ R W + +++ Sbjct: 367 IFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLER 426 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDNAARPEWLEPQFGI-RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL S RL+ +I++EL++V+D+ RRT I E D+ ED I +ED+VVT+SH Sbjct: 486 AALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIEDLISQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ +IN+L L ERIT I+P E E +V AT G V++ L+D Sbjct: 606 QLPEASRGARGRPIINLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTD 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ DE++ V+ N+++L + G+ VRFP S +R GR + GV Sbjct: 663 FSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSM-GRTATGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D+V+S+ I EG+ Sbjct: 722 RGINLNGEDRVVSLII--------------------------------------PRGEGD 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I LTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 744 I---------------LTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERN--GNVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+ DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E D Sbjct: 787 VQVDACDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDD 846 Query: 905 E 905 E Sbjct: 847 E 847 >gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] Length = 892 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/900 (46%), Positives = 579/900 (64%), Gaps = 76/900 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+V+E Sbjct: 246 ASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +VILN LY T LQ+ F +NMVAL+ +P+ F+L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFSLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAIA+ N+DE++ +I+ +P P+ AR EL+ R W D+ +++ Sbjct: 366 IYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLER 425 Query: 434 --ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +D + + I G +L+E Q +AILELRL RLTGL + I E L I Sbjct: 426 AGVDAARPEWLEPQFGIHG-GQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E L IL S RL+ +I+ EL +VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 485 EELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+ M+DEDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P E E+ + YV AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNILPLEEDERITAILPVREYEA---DKYVFMATADGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFA 717 F + +G IA+ L D ++ V+ +DI+L +K G+ VRF SA +R Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM- 720 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG+ LA+GD+V+S+ IV H + D Sbjct: 721 GRTAAGVRGMKLAEGDKVVSL-IVPHNEGD------------------------------ 749 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +LTV+E G+GKRT+ ++ +R+ +G+ + VS N Sbjct: 750 ----------------------VLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN- 786 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G++V D D+ +++++ GTL+R V E+ R T+GV + TA++E VV ++RI Sbjct: 787 -GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELVVGLQRI 845 >gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] Length = 881 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 73/894 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 14 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 74 RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 134 AKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR + Sbjct: 194 GEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 253 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE + +G RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+V+E Sbjct: 254 IETDEKTG-RETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 312 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ AF+ R EVV RRT Sbjct: 313 IKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIISAFIRHRREVVTRRT 372 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L LA+A+AN+D V+ +IR +PNP A+ L+ + W+ + +++ Sbjct: 373 IYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQPWDLGSVSTMLER 432 Query: 434 IDDSS----------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 DS+ Y + DG YL+E Q +AIL+LRL +LTGL + + +E L ++ Sbjct: 433 AGDSNVARPEWLEPQYGV-HDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRDLLLQ 491 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL S RL+ +I++EL ++KD+ + PRRT I E D+ ED I E++VVT+S Sbjct: 492 IAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADINIEDLINEENVVVTLS 551 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV Sbjct: 552 HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 611 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARG+ +IN+L L Q ERIT I+P E E +V AT G V++ L Sbjct: 612 YQLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGK---FVFMATASGTVKKTPLQ 668 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF + +G IA+ L+ DE++ V+ N+++L + G+ VRF +R GR + G Sbjct: 669 DFSRPRSAGIIAVNLNEGDELIGVDLTDSTNEVMLFSADGKVVRFAEDCVRPM-GRTATG 727 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L+ D+V+S+ I+ D D Sbjct: 728 VRGMKLSDDDKVVSL-IIPRGDGD------------------------------------ 750 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ILTV+E G+GKRT+ ++ NR+ +G+ + VS+ N G +V Sbjct: 751 ----------------ILTVTENGYGKRTAQSEYPTKNRATQGVISIKVSERN--GKVVG 792 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + DQI+++++ GTL+R V+E+ I R T+GV + T + E VV ++R+ Sbjct: 793 AIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGELVVGLQRV 846 >gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] Length = 907 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/903 (45%), Positives = 581/903 (64%), Gaps = 52/903 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ++S+R +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL DL KDTVD+ NYDG+ + P VL + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 SRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHNM 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252 E++DGC+A+ID+ + +D LM I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 188 REIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARHT 247 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + H EKT R+ I+VTE+PYQVNKA ++EKIAELV++KRI IA+LRDESD++G RVVI Sbjct: 248 IEHDEKTG--RDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S DV++N L+ +T LQ++F +NMVAL+ +P+ L IL+AFV R EVV RR Sbjct: 306 EVKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQPKILNLKEILEAFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDR H+L GLA+A++N+DEV+ +I+ SP+ A+ +L+ R+W + D+++ Sbjct: 366 TLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDMLE 425 Query: 433 LIDDSS---------YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +S Y + Y LS Q +AILELRL RLTGL + + +E S+ Sbjct: 426 RAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSILK 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E +IL+S RLL +I++EL +++D+ R+T I LD+ ED I EDMVVT+ Sbjct: 486 RIAELNEILASPERLLDVIREELQAIRDQYGDERKTEIQASHLDLTIEDLINEEDMVVTI 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S GY K PLS Y+AQRRGG+G+S M+DED + L + STH +VL FS+ G VY K Sbjct: 546 SRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRGKVYWLK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P S +RGK LIN+L L++GE I I+P E + Y+ FAT G V+R L Sbjct: 606 VYEMPNASRGSRGKPLINLLPLDEGEAINAILPVRE---YREDSYIFFATAKGTVKRTSL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA+ L+ D ++ + + +L + G+ +RF +R GR + Sbjct: 663 EQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAM-GRTAR 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L G +VIS+ I SL D+ + Sbjct: 722 GVRGMRLQGGAEVISLIIP-------------------------------QSLTIDAETD 750 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + E + + + +ILT SE G+GKRT +F + R G+G+ A S+ N GALV Sbjct: 751 DDAEERPVETVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRN--GALV 808 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V D+D+++L++DKGTL+R V E+ ++SR T+GV + T + E +V+ R+ E + Sbjct: 809 AAIQVRDSDEMMLITDKGTLVRTRVGEVSVSSRNTQGVTLIRTGEGEHLVATVRVDEPDA 868 Query: 903 VDE 905 V++ Sbjct: 869 VED 871 >gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] Length = 890 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/894 (46%), Positives = 573/894 (64%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ ++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D Y I DG +L+E Q +AILELRL RLTGL + I +E +L E Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARGK ++NIL L +GERIT I+P E N ++ AT G V++ L Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L D ++ V+ +DI+L +K G+ VRF +R GR + G Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L + DQV+S+ + S EG Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ EE+ ++++ + + + + +EL +E ++T Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ K D+ R GKG AT + + I L+ N +D I+ S +G Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ ASR +G V I + ER+ ++ + E Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638 >gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath] gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath] Length = 860 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/895 (46%), Positives = 569/895 (63%), Gaps = 73/895 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGDPPAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVDF PNYD S +EP VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+A+I+NP+ + LM + GPDFPT +I G GI+ AY TGRG I +R Sbjct: 186 NLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGIINGAAGIREAYLTGRGRIYLRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 E G R+ I+V E+PYQVNKA +LEKIAELV+E ++ I+ LRDESD+ G R+VIE Sbjct: 246 CQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGMRMVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG + +V+LN LY+ T +QS+F +NMVAL +P L ++ AF+ R EVV RRT Sbjct: 306 LRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGRPRLMNLRDLIAAFIDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAHVL GLA+A+AN+DEV+ +I+ SP+P A+ L+ R+W + +L++ Sbjct: 366 LHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVVTELLER 425 Query: 434 ID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D D Y + +G LS +Q +AIL+LRL RLTGL +D I E +L + Sbjct: 426 ADAAEASRPRDLDPVYGL-REGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYRALLEQ 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL+ +RL+ +I+ EL++++++ PRRT I+ LD+ ED I EDMVVTVS Sbjct: 485 IADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDMVVTVS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PLS YRAQRRGG+G+ ++ED++ L + +TH ++L FSS G VY KV Sbjct: 545 HEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662 + LP+ S ARG+ +N+L L +GERI I+P E DE+ ++ AT G V++ L Sbjct: 605 YELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAH----FIFMATASGTVKKVAL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F + SGKIA++L D ++ V E D++L + G+ V F + +R GR + Sbjct: 661 SEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETDVRAM-GRTAA 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG++L +G +VI++ I + E Sbjct: 720 GVRGMTLQEGRKVIALII---------------------------------------ASE 740 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G + L ++E G+GKRT +F R G+G+ A S N GA+V Sbjct: 741 GTV---------------LNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARN--GAVV 783 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D+I+L++D GTL+R V+EI + SR T+GV + E+VV ++RI Sbjct: 784 GAALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEKVVGMDRI 838 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 9/120 (7%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L +E ++TVS +G+ K D+R R G+G +A + + I LV N Sbjct: 530 AEDLITEEDMVVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVV---ANT 586 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906 +D I+ S G + + V E+ +ASR +G V + + ER+ ++ IRE DEA Sbjct: 587 HDTILCFSSSGKVYWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIRE---FDEA 643 >gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] Length = 895 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/894 (46%), Positives = 574/894 (64%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A LL DL KDTVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F + +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 + L KARDRAH+L L++A+AN+DE++ +I+ +P P A+ L+ R W+ ++ ++ Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D Y I DG +L+E Q +AILELRL RLTGL + I +E +L E Sbjct: 426 AGTDAARPDWLED-QYGI-RDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEE 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I++EL +V+D RRT I + D++ E+ I +ED+VVT+S Sbjct: 484 IAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV Sbjct: 544 NAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARGK ++NIL L +GERIT I+P E N ++ AT G V++ L Sbjct: 604 YQLPQASRTARGKPIVNILPLEEGERITAILPVSE---FSNEKFIFMATGDGTVKKTSLD 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L D ++ V+ +DI+L +K G+ VRF +R GR + G Sbjct: 661 QFANVRANGLIAVNLRDDDSLIGVDITDGNSDIMLFSKSGKVVRFNEDKVRPM-GRTASG 719 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L + DQV+S+ + S EG Sbjct: 720 VRGMKLPEDDQVVSLIV--------------------------------------PSNEG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ILTV++ G+GKRT ++ R+ +G+ + VS N G +V Sbjct: 742 D---------------ILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI Sbjct: 785 AVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKN------DSSVEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ EE+ ++++ + + + + +EL +E ++T Sbjct: 482 EEIAELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ K D+ R GKG AT + + I L+ N +D I+ S +G Sbjct: 542 LSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV---ANTHDNILCFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ ASR +G V I + ER+ ++ + E Sbjct: 599 YRLKVYQLPQASRTARGKPIVNILPLEEGERITAILPVSE 638 >gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] Length = 885 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/897 (46%), Positives = 575/897 (64%), Gaps = 69/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 KGIT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 12 KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 72 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N DI +D L+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 251 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 252 ANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 311 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN L+ T LQ+ F VNMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 312 CKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 371 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +I+ +P+P A++ L+ R W+ ++ D+++ Sbjct: 372 IFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADMLER 431 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 432 AGTDAARPDWLEPEFGI-REGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 490 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ II+ EL++V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 491 AELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAAIHDIDIEDLITQEDVVVTLSR 550 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L Y AQRRGGKG+S M+D D++ L + +TH ++L FS+ G Y KV+ Sbjct: 551 EGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTRGKAYSLKVF 610 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARGK ++NIL L +GERIT I+P E + ++ AT G V++ L Sbjct: 611 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 667 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ +G IA+ L D ++ V+ T N+I+L +K G+ VRF +R GR + GV Sbjct: 668 FAKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGM-GRTASGV 726 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L DQV+S+ + S EG+ Sbjct: 727 RGMKLTGEDQVVSLIV--------------------------------------PSNEGD 748 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV+E G+GKRT ++ +R+ +G+ + VS N G++V Sbjct: 749 ---------------ILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRN--GSVVGA 791 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D D+ ++++D GTL+R V+E+ R T+GV + TA+DE VV ++RI E E Sbjct: 792 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEPE 848 >gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] Length = 877 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/894 (46%), Positives = 565/894 (63%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD S EP VL R P +L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ C+A+ID PD+ + LM I GPDFPT A+I G +GI NAY TGRG I +R Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAIINGASGIYNAYTTGRGKIYLRAR 245 Query: 254 SHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H E GD R+ I+ TE+PYQVNKA +LEKIAELV+E ++ I+ LRDESD+ G R+V Sbjct: 246 CHFEDI-GDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T Q++F +NMVAL +P L I+ AF+ R E+V R Sbjct: 305 IELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHCMNLREIISAFINHRREIVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+RAH+L GLAIA+AN+DE++ +I+ + P A+ L++++W+A + L+ Sbjct: 365 RTIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALL 424 Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D DD G +Y LSE Q +AILELRL RLTGL +D I NE L + Sbjct: 425 DRADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQ 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL S RL+ II++EL+++K++ RRT I++ D+ DED I EDMVVT+S Sbjct: 485 IDEYLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PLS Y+AQRRGG+G+S ++ D+V L + +TH ++L FSS G VY KV Sbjct: 545 HEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK +N+L L +GE+I I+P E S ++ AT G V++ L Sbjct: 605 YQLPVASRAARGKPFVNLLPLEEGEKINAILPIREFTDSK---FIFMATTAGTVKKTPLK 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F +GKIA+ L D ++ V + ++LL + G+ V F + +R GR + G Sbjct: 662 EFENQRANGKIAIDLREDDTLVGVAVTDGQQNVLLFSSTGKAVCFNEADVRSM-GRTASG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L +G +VIS+ I + EG Sbjct: 721 VRGIRLQEGQKVISLII---------------------------------------ATEG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L ++E G+GKRT +F R G+G+ A S N GA+V Sbjct: 742 T---------------VLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARN--GAVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VNDND+I+L++D GTL+R PV+ I + R T+GV I K+E+V+ V+RI Sbjct: 785 AVLVNDNDEIMLITDGGTLVRTPVDGISVVGRNTQGVTIIKLGKNEKVIGVDRI 838 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 12/155 (7%) Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVE------GNISEERCQELKLKEQFILTVSEKG 807 Y+ + + RL+ EE+ ++K S E N S+ ++L +E ++T+S +G Sbjct: 488 YLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMSHEG 547 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 + K D++ R G+G AT +++ + L+ N +D I+ S +G + + V Sbjct: 548 YVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIV---ANTHDTILCFSSRGKVYWLKV 604 Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 ++ +ASRA +G V + + E++ ++ IRE Sbjct: 605 YQLPVASRAARGKPFVNLLPLEEGEKINAILPIRE 639 >gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 898 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/907 (47%), Positives = 584/907 (64%), Gaps = 42/907 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK +VK Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N I ++ LM I GPDFPTGA+I GR GI+ AY TGRG + +R Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYVRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E T REQIVVTE+PYQVNKA ++EKIAELV+EK+I I+ + D SD++G +VIE Sbjct: 246 ASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EVV RRT Sbjct: 306 VKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+AN+D V+ +IR S E AR L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPMLEA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G DG YLSE Q RAILELRL RLTGL + I E L EI Sbjct: 426 AGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTEIG 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL+S RL+ +I++EL VK + + RRT I D+ ED I +ED+VVT+SH Sbjct: 486 ELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+ +DF+ L + +T ++L FSS G +Y+ KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLYQLKVYQ 605 Query: 606 LPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 LP S ARG ++NIL L + ERIT I+P P E S + ++ AT G V++ L Sbjct: 606 LPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADK-FIFMATASGVVKKVSLD 664 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + SG IA+KL DE++ V+ ++I+L + G+ VRF +A+R GR + G Sbjct: 665 AFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTATG 723 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L+ + +I D EE ++ SSV Sbjct: 724 VRGIKLST--------------------TEISSEEIEEAEIIETDNEE---AEDSSSV-- 758 Query: 784 NISEERCQELKLK--EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ ++R L + E ILTV++ G+GKRT ++ + +R+ KG+ + V++ N G + Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VA V + DQI+L++D GTL+R V E+ + R T+GV I TA+DE+VVS+ER+ E E Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876 Query: 902 IVDEAES 908 DE ES Sbjct: 877 D-DENES 882 >gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 871 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/903 (45%), Positives = 577/903 (63%), Gaps = 75/903 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ NYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+ IDN DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV+EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L R WN ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 ++ + I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPEWLEAQFGI-RDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL++V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++NIL L +GERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDK------FIFMATGDGTVKKTP 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ F + +G IA+ L D ++ V+ T ++DI+L +K G+ VRF +R GR + Sbjct: 659 LTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAM-GRTA 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L DQV+S+ IV D D Sbjct: 718 AGVRGMKLNDDDQVVSL-IVPANDGD---------------------------------- 742 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +LTV++ G+GKRT ++ + R+ +G+ + VS N G + Sbjct: 743 ------------------VLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRN--GPV 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + D++++++D GTL+R V E+ R T+GV + TA+DE VV ++RI E + Sbjct: 783 VGAVQVVEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELD 842 Query: 902 IVD 904 D Sbjct: 843 ETD 845 >gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4] gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4] Length = 879 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/903 (46%), Positives = 577/903 (63%), Gaps = 69/903 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL R P +LVNG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+ID P + ++ LME I GPDFPT A++ GR GI++AY TGRG V+R + Sbjct: 188 SEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRARAT 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEVK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +VILN LY T LQ+ F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W +++ +++ Sbjct: 368 ELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEKAG 427 Query: 436 DS-------SYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 D S G DG YL+E Q +AIL+LRL +LTGL + I +E L I Sbjct: 428 DDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIAAL 487 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L IL S RL+ +IK+EL V + RRT + +D+ ED I ED+VVT+SHLGY Sbjct: 488 LYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHLGY 547 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++LP Sbjct: 548 AKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQLP 607 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S QARG+ +IN+L L +GERIT I+P E ++ + YV+ AT HG V++ L + + Sbjct: 608 LASRQARGRPIINLLPLAEGERITAILPVREYDA---DKYVIMATSHGTVKKTSLDQYSR 664 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ L D+++ V+ +N+++L + G+ VRF +R GR + GVRGI Sbjct: 665 PRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVRGM-GRTATGVRGI 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L G V+S+ + KND + Sbjct: 724 KLEDGQSVVSLIVP----------------------------------KNDGA------- 742 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ILTV+E G+GKRT ++ +R+ KG+ + VS+ N GA+V V Sbjct: 743 ------------ILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERN--GAVVGAVQV 788 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +ND+I+L+SDKGTL+R P + + R T+GV I TA DE VV ++RI EI DE E Sbjct: 789 LENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQRI--DEIQDEQE 846 Query: 908 STE 910 E Sbjct: 847 FDE 849 >gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica] Length = 879 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 575/896 (64%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 11 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 71 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 131 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 191 SEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 250 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE+ Sbjct: 251 IEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEV 310 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 311 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRTI 370 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W ++ +++ Sbjct: 371 FELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNVASMLERA 430 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D S Y + +G YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 431 GDDAARPEWLESQYGV-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 489 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++ELL++K + + RRT + E D+ ED I +ED+VVT+SH Sbjct: 490 ELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADINIEDLINQEDVVVTLSHQ 549 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 550 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSRGRLYWMKVYQ 609 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E + LYV AT G V++ L DF Sbjct: 610 LPEASRSARGRPIINLLPLEQDERITAILPVREYE---DGLYVFMATASGTVKKTALQDF 666 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G +A+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVR Sbjct: 667 SRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFEEDAVRAM-GRTATGVR 725 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+V+S+ I G+ E +T +N Sbjct: 726 GIKLNGKDKVVSLIIP------------------------RGEGEILTVTEN-------- 753 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 G+GKRT+ ++ I +R+ +G+ + VS+ N G +V Sbjct: 754 ---------------------GYGKRTAENEYPIKSRATQGVISIKVSERN--GNVVGAI 790 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E E Sbjct: 791 QVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEPE 846 >gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145] gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145] Length = 879 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/896 (46%), Positives = 587/896 (65%), Gaps = 73/896 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K A Sbjct: 8 VSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LL DL K+TVDF NYDG+ + P VL + PN++VNG GIAVGMATNIP HNL Sbjct: 128 EKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G +A+IDNP+I ++ LME I GPDFPT A I GR+GI AY TGRG I +R + Sbjct: 188 TEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIHLRAKAE 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E + SG RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 248 VEVDEKSG-RESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 ++RG +V+LN LY T +Q +F +NMVAL+ +P+ F L +L AFV R EVV RR+ Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRREVVTRRS 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAI++AN+DEV+ +IR SP P A++ L+ R W ++ +++ Sbjct: 367 VYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLES 426 Query: 434 --IDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +D + Y I DG+ YL+E Q +AIL+LRL +LTGL + I +E L +I Sbjct: 427 AGVDAARPEHLPEEYGI-RDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E L IL S RL+ +I++EL+ ++D R+T I D+ ED I ED+VVT+SH Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLINEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG++ M+D+DFV L++ +TH ++L FS+ G +Y KV+ Sbjct: 546 EGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRIYWMKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S +RGK ++N+L L ERIT I+P +PED+ +V+ ATKHG V++ Sbjct: 606 QLPLASRASRGKPIVNLLPLESDERITAILPTRDYPEDK------FVIMATKHGTVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L ++ + G IA+ L+ DE++ V+ E +I+L + G+ VRF +R GR + Sbjct: 660 LPEYSRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L +G +V+S+ V Sbjct: 719 TGVRGIRLEEGQKVVSLI-----------------------------------------V 737 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 G +E ++ ILTV+E GFGKRT ++ +R+ KG+ + VS+ N GA+ Sbjct: 738 PGTYEDE-------QQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERN--GAV 788 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V V D ++I+L+S+KGTL+R VNE+ + R T+GV + T DE+VV ++RI Sbjct: 789 VGAMEVVDGNEIMLISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844 >gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] Length = 874 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/896 (45%), Positives = 577/896 (64%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 14 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 74 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH +L DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 134 AKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR + Sbjct: 194 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 253 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 254 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 314 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ RSW + +++ Sbjct: 374 FELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRSWALGTVAAMLERA 433 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y + +G +L+E Q +AIL+LRL +LTGL + + E L +I+ Sbjct: 434 GDDAARPEWLEPQYGV-HNGEYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQIE 492 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ + RRT I E D+ ED I +ED+VVT+SH Sbjct: 493 ELLFILRSPDRLMEVIREELEAIRNVYNDARRTEITENTADINIEDLINQEDVVVTLSHQ 552 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + YV AT G V++ L DF Sbjct: 613 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTPLQDF 669 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVR Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTATGVR 728 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+V+S+ I EG+I Sbjct: 729 GIKLMDDDKVVSLII--------------------------------------PRGEGHI 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 751 ---------------LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GHVVGAI 793 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E+E Sbjct: 794 QVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 849 >gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] Length = 874 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/896 (46%), Positives = 577/896 (64%), Gaps = 75/896 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG YL+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEEQYGI-RDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 KELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++NIL L +GERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDK------FIFMATGDGTVKKTP 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + Sbjct: 659 LTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAM-GRTA 717 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ LA+ DQV+S+ + + Sbjct: 718 AGVRGMKLAEDDQVVSLIV--------------------------------------PAN 739 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 EG+I LTV++ G+GKRT ++ R+ +G+ + VS N G + Sbjct: 740 EGDI---------------LTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPV 782 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V V + D++++++D GTL+R V+E+ R T+GV + TA+DE VV ++RI Sbjct: 783 VGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRI 838 >gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179] Length = 877 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/892 (47%), Positives = 578/892 (64%), Gaps = 41/892 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M G ++NK Y K Sbjct: 6 KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD L RMAQ +SLR L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVD++PNYDGS P VL + P +LVNG GIAVGMATNIP H Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVDGC+A IDN I +D LM I GPDFPT A+I G+ GI+ AY TGRG I IR Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIYIRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +++LN LY T LQ F +N+VAL+ +P+ L +++AFV R EVV RRT Sbjct: 306 VKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ + W +++ ++ Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAMLAA 425 Query: 434 I-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D +G G +Y LSE Q +AIL+LRL +LTGL + I +E SL I Sbjct: 426 AGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDVIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S +RL+ +I++EL +K + + PRRT I D+ ED I ED+VVT+SH Sbjct: 486 ELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLINPEDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L + ERIT I+P E + ++V AT G V++ L++F Sbjct: 606 LPQASRGARGRPIVNLLPLEENERITAILPVKE---YAEDKFIVMATAGGLVKKTALTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GVR Sbjct: 663 SRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAM-GRTAAGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA + + DE D EE + + D S++ +I Sbjct: 722 GIKLALTNDI------------SDE---------------ENDNEESGNDETDQSLDLSI 754 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 755 DKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSERN--GKVVAAA 812 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V +NDQI+L++D GTL+R V EI + R T+GV + T+ E+VVS+ER+ Sbjct: 813 QVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERV 864 >gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1] gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1] Length = 885 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 568/894 (63%), Gaps = 71/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 + L KARDRAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W + ++ Sbjct: 366 IFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D Y I DG YL+E Q +AILELRL RLTGL + I +E +L E Sbjct: 426 AGTDAARPDWLED-QYGI-RDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEE 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I +EL V+ RR+ I + D++ E+ I RED+VVT+S Sbjct: 484 IAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV Sbjct: 544 HEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ S ARGK ++NIL L +GERIT I+P E ++ AT G V++ L Sbjct: 604 YQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPEK---FIFMATGDGTVKKTSLD 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L D ++ V+ ++DI+L +K G+ VRF +R GR + G Sbjct: 661 QFSNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAM-GRTAAG 719 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ LA DQV+S+ + S +G Sbjct: 720 VRGMKLADEDQVVSLIV--------------------------------------PSNQG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +I LTV++ G+GKRT ++ R+ +G+ + VS+ N G +V Sbjct: 742 DI---------------LTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERN--GPVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D++++++D GTL+R V E+ R T+GV + TA DE VV ++RI Sbjct: 785 AIQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTASDESVVGLQRI 838 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKND------SSVEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ TEE+ ++ S + + + +EL +E ++T Sbjct: 482 EEIAELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S +G+ K D+ R GKG AT K+ E + + N +D I+ S +G Sbjct: 542 LSHEGYVKYQILSDYEAQRRGGKGKSAT---KMKEEDYIERLLVANTHDNILCFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ +ASR +G V I + ER+ ++ + E Sbjct: 599 YRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSE 638 >gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str. Pm70] gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70] Length = 899 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/896 (46%), Positives = 585/896 (65%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 19 ISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 79 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 139 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N +I +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 199 GEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E E IVV EIPYQVNKA ++EKIA+LV+EK++ I+ + D SD+ G R+ I++K Sbjct: 259 VETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITDLSDKDGMRIEIKIK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T LQ F +N+VAL+ +P+ L +++AFV R EVV RRT Y Sbjct: 319 RDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEAFVLHRREVVTRRTVY 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPE+A+R L+ ++W + ++ Sbjct: 379 ELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQAWELGHVSQMLAATG 438 Query: 432 -------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL + Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I Sbjct: 439 VDAARPEDL--EEQYGI-RDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDVI 495 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 496 GELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDLIAQEDVVVTLSH 555 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG+S ++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 556 EGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFSSRGRLYWLKVY 615 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP S ARG+ ++NIL L++ ERIT I+P + ED+ +VV AT G V++ Sbjct: 616 QLPQASRGARGRPIVNILPLDENERITAILPVTAYEEDK------FVVMATAGGIVKKIA 669 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L++F + +G IA+ L DE++ V+ +N+I+L + G+ VRF +A+R GR + Sbjct: 670 LTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENAVRAM-GRAA 728 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI LA L D DE D EEI+ + ++ Sbjct: 729 TGVRGIKLA-----------LTNDLSDDESAV--------------DMEEISDENTNDAL 763 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G + Sbjct: 764 DLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKVSERN--GKV 821 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V ++DQI+L++D GTL+R VNEI I R T+GV + T++ E +V ++R+ Sbjct: 822 VAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIRTSESETLVGLQRV 877 >gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336] gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336] Length = 881 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/894 (47%), Positives = 583/894 (65%), Gaps = 39/894 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q +NK YVK A Sbjct: 8 VTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK LL DL K+TVDF PNYDG P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 QKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A +DN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 NEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE IVVTEIPYQVNKA ++EKIAELVREK+I I+++RD S+++G RV +E+K Sbjct: 248 IETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVEVK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T +Q F +NMVAL+ +P+ L I++AFV R EV+ RRT + Sbjct: 308 RDAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKLLNLKQIIEAFVRHRREVITRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434 L KAR+RAH+L GLAIA+AN+D V+ +IR S + AR L+ ++W ++ ++ Sbjct: 368 ELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLSATG 427 Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 D+ + +G DG YLS+ Q RAIL+LRL RLTGL + I E + IEI + Sbjct: 428 VDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEIGKL 487 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L IL+S RL ++ +EL VK+E RRT I D+ ED I +ED++VT+SH GY Sbjct: 488 LHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDLITQEDVIVTLSHAGY 547 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS G +Y KV++LP Sbjct: 548 VKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRGRLYWLKVYQLP 607 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + ARG+ ++NIL L + ERIT I+P E + ++V AT G V++ L++F + Sbjct: 608 QANRGARGRPIVNILPLQENERITAILPVAAYEE---DKFIVMATAGGLVKKIALTEFSR 664 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 SG IA+ L DE++ V+ N+I+L + G+ VRF +A+R GR + GVRGI Sbjct: 665 PRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENAVRAM-GRLATGVRGI 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA L D DE ++ +S + DT+E L D V I + Sbjct: 724 KLA-----------LTNDISDDESAVEIEDISDE------DTKEPLDLNVDKVVSLVIPK 766 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + ILT ++ G+GKRT+ ++ +R+ KG+ + VS N G +VA V Sbjct: 767 --------NDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRN--GKVVAATQV 816 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +NDQI+L++D GTL+R V+EI I R T+GV + TA+ E+VVS+ER+ +++ Sbjct: 817 EENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVVSLERVCDTD 870 >gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568] gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568] Length = 882 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/905 (45%), Positives = 583/905 (64%), Gaps = 70/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 SEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ IV + D Sbjct: 723 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847 Query: 906 AESTE 910 +S E Sbjct: 848 LDSLE 852 >gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] Length = 875 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/893 (46%), Positives = 575/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N DI ++ LM I GPDFPT A+I GR GI++AY TGRG I +R Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIYLRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVVTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 246 ADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A A+VILN LY T LQ+ F +NMVAL+ +P F L +LK FV R EVV RRT Sbjct: 306 CKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQPRLFNLKDMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+DE++ +IR + P AR L R W+ + +++ Sbjct: 366 IFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLEA 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + + DG YL+E Q +AIL+LRL +LTGL + I +E L I Sbjct: 426 TGVDAARPEWLEDEFGV-RDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + ILSS RL+ +I++EL +V+D RRT I D++ ED I +ED+VVT+SH Sbjct: 485 GELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLINQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 545 EGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L Q ERIT I+P E E ++ +V AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNLLPLEQDERITAILPVKEYE---DDKFVFMATSDGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ +ND++L +K G+ VRF S +R GR + GV Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAM-GRTAAGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA+GD+V+S+ IV H + D Sbjct: 721 RGIKLAEGDKVVSL-IVPHNEGD------------------------------------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +LTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 743 ---------------VLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERN--GCVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ + +++++ GTL+R V E+ R T+GV + T++ ERVV ++RI Sbjct: 786 VQVDTGYEFMMITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVVGLQRI 838 >gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] Length = 887 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/919 (45%), Positives = 584/919 (63%), Gaps = 82/919 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E IVV EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I D YL+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEEQFGI-RDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 485 AELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLITQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P E + +V AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVRE---YTEDKFVFMATADGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI--------SAI 713 F + +G IA+ L D ++ V+ + DI+L + G+ VRF P+ + Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGV 721 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI LA+GD+VIS+ IV H D D Sbjct: 722 RGM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGD-------------------------- 753 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LTV+E G+GKRT ++ +R+ +G+ + VS Sbjct: 754 --------------------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVS 787 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G +V D D+ +++++ GTL+R V+E+ R T+GV + T + E+VV Sbjct: 788 ERN--GRVVGAVQAEDGDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTTEGEKVVG 845 Query: 894 VERI--RESEIVDEAESTE 910 ++RI E E++++AE E Sbjct: 846 LQRIDEPEEELIEDAELVE 864 >gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] Length = 873 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/896 (45%), Positives = 580/896 (64%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 14 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 74 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH +L DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 134 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ GC+A ID+ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR + Sbjct: 194 GEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAE 253 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V+EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 254 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 314 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 374 FELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIARPWDLGNVAAMLERA 433 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y + DG YL+E Q +AIL+LRL +LTGL + + E L +I+ Sbjct: 434 GDDAARPEWLEEQYGV-HDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLKQIE 492 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ + RRT I E D+ ED I +ED+VVT+SH Sbjct: 493 ELLYILRSPERLMEVIREELEAIRELYNDARRTEITENTADINIEDLISQEDVVVTLSHQ 552 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E + YV AT G V++ L DF Sbjct: 613 LPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGY---YVFMATASGTVKKTALQDF 669 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVR Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRPM-GRTATGVR 728 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ I EG+I Sbjct: 729 GIRLADEDKVVSLII--------------------------------------PRGEGHI 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 751 ---------------LTVTENGYGKRTAEQEYPTKSRATQGVISIKVSERN--GNVVGAI 793 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V++ DQI+++++ GTL+R V+E+ + R T+GV + TA++E+VV ++R+ E+E Sbjct: 794 QVDETDQIMMITNAGTLVRTRVSEVSVVGRNTQGVTLIRTAEEEKVVGLQRVAETE 849 >gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] Length = 906 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/931 (45%), Positives = 582/931 (62%), Gaps = 103/931 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++NIL L +GERIT I+ F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI----- 710 L+ F + +G IA+ L D ++ V+ EN+I+L +K G+ VRF P+ Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENG 718 Query: 711 --------------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +R GR + GVRG+ LA+ DQV+S+ + H Sbjct: 719 KPVLDENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSH------------- 764 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 EG+ ILTV+E G+GKRT+ + Sbjct: 765 -------------------------EGD---------------ILTVTENGYGKRTALSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G +V V + D++++++D GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 T+GV + TA+DE VV ++RI E VD+ E Sbjct: 843 TQGVTLIRTAEDESVVGLQRIEE---VDDEE 870 >gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] Length = 898 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/905 (45%), Positives = 584/905 (64%), Gaps = 69/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 40 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 100 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 160 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 219 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + IR + Sbjct: 220 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRASAE 279 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V+EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 280 VEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 339 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 340 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVVTRRTI 399 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 400 FELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARSWDLGNVAAMLERA 459 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G +G +L+E Q +AIL+LRL +LTGL + + E L ++I+ Sbjct: 460 GDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLLVQIEA 519 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D + PRRT I E D+ ED I +ED+VVT+SH G Sbjct: 520 LLFILRSPERLMEVIREELEIIRDTYNDPRRTEITENTADINIEDLINQEDVVVTLSHQG 579 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +DEDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 580 YVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTHDTILCFSSRGRLYWMKVYQL 639 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L Q ERIT I+P E E +N V AT G V++ L +F Sbjct: 640 PEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN---VFMATASGTVKKTPLQEFS 696 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVRG Sbjct: 697 RPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFAEDAVRPM-GRTATGVRG 755 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D+V+S+ I EG+I Sbjct: 756 IKLMDNDKVVSLII--------------------------------------PRGEGHI- 776 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 LTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 777 --------------LTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GNVVGAIQ 820 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V++ DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E++ + A Sbjct: 821 VDETDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETDDDENA 880 Query: 907 -ESTE 910 E+TE Sbjct: 881 IENTE 885 >gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25] gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25] Length = 906 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/931 (45%), Positives = 582/931 (62%), Gaps = 103/931 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++NIL L +GERIT I+ F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI----- 710 L+ F + +G IA+ L D ++ V+ EN+I+L +K G+ VRF P+ Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENG 718 Query: 711 --------------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +R GR + GVRG+ LA+ DQV+S+ + H Sbjct: 719 KPVLDENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSH------------- 764 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 EG+ ILTV+E G+GKRT+ + Sbjct: 765 -------------------------EGD---------------ILTVTENGYGKRTALSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G +V V + D++++++D GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 T+GV + TA+DE VV ++RI E VD+ E Sbjct: 843 TQGVTLIRTAEDESVVGLQRIEE---VDDEE 870 >gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163] gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617] Length = 878 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 576/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ Y I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDNAARPEWLEDQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V + ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + ++D ++ Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 745 ---------------MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841 >gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens] Length = 880 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 70/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R + Sbjct: 188 AEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ + W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL++VK+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ IV + D Sbjct: 723 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVETSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847 Query: 906 AESTE 910 +S E Sbjct: 848 LDSLE 852 >gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] Length = 883 Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/905 (45%), Positives = 582/905 (64%), Gaps = 70/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 SEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E+ Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL++VK+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ IV + D Sbjct: 723 GINLGEGDGVISL-IVPRGEGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E +E Sbjct: 788 QVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847 Query: 906 AESTE 910 +S E Sbjct: 848 LDSLE 852 >gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] Length = 884 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/900 (46%), Positives = 576/900 (64%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A+I++ +I +D LME I GPDFPT A+I GR GI AY TGRG I +R + Sbjct: 188 SEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIYVRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 >gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] Length = 849 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/895 (45%), Positives = 572/895 (63%), Gaps = 73/895 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 12 VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 72 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL DL K+TVDF PNYDGS EP+V AR+PN+LVNG GIAVGMATNIP HN+ EV Sbjct: 132 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 191 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+A++ NPD+D++ L+E++ PDFPT I G G+K Y TGRG +V+R +H E Sbjct: 192 VDACLALLKNPDMDIEQLIELVPAPDFPTAGFIYGLAGVKEGYRTGRGRVVMRARTHFED 251 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 GDR+ I++ E+PYQVNKA +L KI E+VREKRI ++++RDESD+ G R VIELKRG Sbjct: 252 IGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELKRG 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +ADVILNQLY+ T +Q F +NMVA+ +P+ L +++AF+ R EVV RRT + L Sbjct: 312 ENADVILNQLYKDTQMQDSFGINMVAIVDGQPKLCNLKDVIEAFLRHRREVVTRRTIFEL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R H+L GLA+A++N+DE++ +I+ +P P A+RELM R W +S ++D++ +D++ Sbjct: 372 RKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRVDEA 431 Query: 438 SYTIG-------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S G GT Y LS+ Q +AILELRL RLTGL +D I E + +I + LD Sbjct: 432 SRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDKITDLLD 491 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +R+ II EL++++ + RR+ IV DM ED I ED+VVT+SH GY+K Sbjct: 492 ILAKPARVTQIIGDELITIRSQFGDKRRSEIVTHTQDMSMEDLIAPEDVVVTMSHGGYMK 551 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 L YRAQ+RGG+G+ +++DF+ +LFI +TH +L FS+ G VY KV+ +P G Sbjct: 552 AQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRVYWLKVYDVPQG 611 Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + +RGK ++N+L L GE+I I+P F ED+ ++ FAT G V++ LSDF Sbjct: 612 TRISRGKPIVNLLPLEAGEKINAILPVKQFAEDQ------FIFFATSEGTVKKTPLSDFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++G IA+ LD D ++ V ++D++L + G+ VRF +R GR + GVRG Sbjct: 666 NPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGM-GRTARGVRG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ++LAKG +VI+ L+ + EE Sbjct: 725 MNLAKGGKVIA--------------------------LLVAENEE--------------- 743 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 Q +LT +E G+GKRT ++ R +G+ A S+ N G +VA Sbjct: 744 -----------QSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERN--GKVVAATL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D+I+L+ G LIR VNEIR RAT+GV + + + E++ + RI E+E Sbjct: 791 VKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGEKLAGLSRIAETE 845 >gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] Length = 901 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/901 (46%), Positives = 588/901 (65%), Gaps = 43/901 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G +NK Y K A Sbjct: 19 ISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 79 RIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS Q P VL + P +LVNG GIAVGMATNIP HNL Sbjct: 139 TKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A I+N +I +D LM I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 199 GEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAKAE 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E E IVV EIPYQVNKA ++EKIA+LV+EK+I I+ + D SD+ G R+ I++K Sbjct: 259 VETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITDLSDKDGMRIEIKIK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T LQ F +N+VAL+ +P+ L +++AFV R EVV RRT Y Sbjct: 319 RDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEAFVLHRREVVTRRTVY 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL-- 433 L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPETA+REL+ + W + D++ Sbjct: 379 ELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQPWKLGHVADMLAAAG 438 Query: 434 ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +D + Y I DG YL+EVQ +AIL+LRL +LT LG D+I +E L I E Sbjct: 439 VDAARPEELEEQYGI-RDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYQKLLEVIGE 497 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++++ + PRRT I D+ ED I +ED+VVT+SH G Sbjct: 498 LLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDLIAQEDVVVTLSHEG 557 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S ++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 558 YVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFSSRGRLYWLKVYQL 617 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S +RG+ ++NIL L++ ERIT I+P E + +VV AT G V++ L++F Sbjct: 618 PQASRGSRGRPIVNILPLDENERITAILPVTAYEE---DKFVVMATAGGIVKKISLTEFS 674 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + SG IA+ L DE++ V+ N+I+L + G+ VRF SA+R GR + GVRG Sbjct: 675 RPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESAVRAM-GRAATGVRG 733 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA L D DE + E+I+ +D ++ N+ Sbjct: 734 IKLA-----------LTNDLSDDESAV--------------EIEDISDDNSDDILDLNVD 768 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + + + ILT ++ G+GKRT ++ +R+ KG+ + VS+ N G +VA Sbjct: 769 KVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKVSERN--GKVVAATQ 826 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + DQI+L++D GTL+R VNEI + R T+GV + T +DE +V ++R+ E+ +EA Sbjct: 827 VEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTEDETLVGLQRV--CEVDEEA 884 Query: 907 E 907 E Sbjct: 885 E 885 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 49/247 (19%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSVLFFSS 594 VV + G VK++ L+ + R SG++ +RDED + + I ++ FS+ Sbjct: 655 FVVMATAGGIVKKISLTEFSRPRS-----SGIIALNLRDEDELIGVDITDGSNEIMLFSA 709 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------ 642 G +V R + +A G+A + +G ++ +DES+ Sbjct: 710 QG-----RVVRFSESAVRAMGRAATGV----RGIKLALTNDLSDDESAVEIEDISDDNSD 760 Query: 643 ----------------WNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEI 684 N ++ AT++G +R +L ++ +R+ G I++K+ R+ Sbjct: 761 DILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKVSERNGK 820 Query: 685 LSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + T +E D I+L T G VR ++ I V GRN+ GVR I + + ++ + V Sbjct: 821 VVAATQVEETDQIMLITDAGTLVRTRVNEISVV-GRNTQGVRLIRTTEDETLVGLQRVCE 879 Query: 744 ADADYDE 750 D + ++ Sbjct: 880 VDEEAED 886 >gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] Length = 887 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/919 (45%), Positives = 585/919 (63%), Gaps = 82/919 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I D +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEEQFGI-RDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + ILSS RL+ +I++EL VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 485 AELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L + ERIT I+P E + +V AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNILPLEENERITAILPVRE---YTEDKFVFMATADGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI--------SAI 713 F + +G IA+ L D ++ V+ + DI+L + G+ VRF P+ + Sbjct: 662 FSRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGV 721 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI LA+GD+VIS+ IV H D D Sbjct: 722 RGM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGD-------------------------- 753 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +LTV+E G+GKRT ++ +R+ +G+ + VS Sbjct: 754 --------------------------VLTVTENGYGKRTELAEYPAKSRATQGVVSIKVS 787 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G++V D D+ +++++ GTL+R V+E+ R T+GV + T + E+VV Sbjct: 788 ERN--GSVVGAIQAEDGDEFMMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTIEGEKVVG 845 Query: 894 VERIRE--SEIVDEAESTE 910 ++RI E E++++AE E Sbjct: 846 LQRIDEPDEELIEDAELVE 864 >gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430] gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430] gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158] Length = 878 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 576/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ Y I +G YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDNAARPEWLEEQYGI-HNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + ++D ++ Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 745 ---------------MTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841 >gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] Length = 894 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/900 (46%), Positives = 575/900 (63%), Gaps = 76/900 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ PVV+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE RE I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+V+E Sbjct: 246 ANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +VILN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLAIA+ N+D ++ +I+ +P P+ AR L+ W D+ +++ Sbjct: 366 IFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLER 425 Query: 434 --ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +D + Y I G +L+E Q +AILELRL RLTGL + I E L I Sbjct: 426 GGVDAARPEWLEPQYGI-HGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 +E L IL S RL+ +I+ EL +VK++ + RRT I D++ ED I +ED+VVT+SH Sbjct: 485 EELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+ M+DEDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++NIL L +GERIT I+P E E+ + YV AT G V++ L+D Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILPVREYEA---DKYVFMATADGTVKKTPLTD 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFA 717 F + +G IA+ L D ++ V+ +DI+L +K G+ VRF SA +R Sbjct: 662 FSRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM- 720 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG+ LA GD+V+S+ IV H + D Sbjct: 721 GRTAAGVRGMKLAAGDKVVSL-IVPHNEGD------------------------------ 749 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +LTV+E G+GKRT+ ++ +R+ +G+ + VS N Sbjct: 750 ----------------------VLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN- 786 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G++V D D+ +++++ GTL+R V E+ R T+GV + TA E VV ++RI Sbjct: 787 -GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELVVGLQRI 845 >gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] Length = 888 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/909 (46%), Positives = 572/909 (62%), Gaps = 79/909 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V + DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G WNKKYVK Sbjct: 35 KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A I G+VMGKYHPHG++AIYD L RMAQ +SLR L++GQGNFGS+DGDPPAA RYTE Sbjct: 95 SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL D+ K+TVDF PNYDGS QEP VL R PN+LVNG GIAVGMATN+P H Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE +D C+ ++D+PD D ALM + GPDFPTGA+I G GI+ AY TGRG I IR Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALINGAKGIREAYETGRGRIYIRAK 274 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S ++ IVV E+PYQVNKA +L KIAELV+EK+I I LRDESD+ G R+VI Sbjct: 275 THIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMVI 334 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG A+VILN L++ T LQ +F +NM+AL G +P +L L+ F+A R EVV RR Sbjct: 335 ELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQPRLLSLKEALQVFIAHRREVVTRR 394 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI- 431 + Y L KAR+RAH+L GLAIA+AN+DE++ +IR S P A+ L+ R W + D++ Sbjct: 395 SIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDMLA 454 Query: 432 ------DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D G G Y LS Q +AIL+LRL RLTGL +D I E + EI Sbjct: 455 RAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIHEI 514 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + L+IL RLL +IK+ELL +K++ + RRT+I++ L++ ED I ED V+T+SH Sbjct: 515 EALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDLIAEEDRVITLSH 574 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+K PL+ Y AQRRGGKG+S ++DEDFV L + +TH ++L F++ G VY KV+ Sbjct: 575 EGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTNRGKVYWLKVY 634 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 LP A+GK ++N+L GER+ ++ +PED+ Y++FATK G V++ Sbjct: 635 ELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYPEDQ------YLIFATKSGTVKKTP 688 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS++ + G IA+ L DE++ V DI+L + G+ VRF +++R GR+S Sbjct: 689 LSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSM-GRDS 747 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG++L G +VI++ +V EE Sbjct: 748 TGVRGMNLDDGQRVIALCVV----------------------------EE---------- 769 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +G+I LT++E G+GKRT D+ R KG+ + S N G Sbjct: 770 QGDI---------------LTITENGYGKRTPVADYPQKGRGTKGVISIACSARN--GQA 812 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V +++ I+LV+D GTL+R V EI + R T+GV + T E++++V ++ Sbjct: 813 VCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAV-----AK 867 Query: 902 IVDEAESTE 910 IV E+E +E Sbjct: 868 IVAESEDSE 876 >gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus parainfluenzae T3T1] Length = 881 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/919 (45%), Positives = 595/919 (64%), Gaps = 53/919 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q G+ KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E T +EQI+VTE+PYQVNKA ++EKIAEL+++K+I I+++ Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV+RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S + A +L+ R Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISR 413 Query: 421 SWNASDIKDLIDLIDDSSYTI---------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471 W ++ +++ L+D ++ GSD YLS Q AILELRL RLTGL + Sbjct: 414 PWKLNN--EILGLLDAAARPAELAAEFGIKGSD--YYLSPEQVDAILELRLHRLTGLATE 469 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ NE L ++I E L I++S RL+ +I++EL V+ + RRT I D++ ED Sbjct: 470 EVINEYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLED 529 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L Sbjct: 530 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILC 589 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +V+ A Sbjct: 590 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMA 646 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF S Sbjct: 647 TAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAES 706 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 A+R GR + GVRGI LA L D DE + EE Sbjct: 707 AVRAM-GRLATGVRGIKLA-----------LTNDIADDESAV--------------EIEE 740 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++ + +++ NI + + + ILT ++ G+GKRT ++ +R+ KG+ + Sbjct: 741 VSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIK 800 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 VS+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE V Sbjct: 801 VSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHV 858 Query: 892 VSVERIRESEIVDEAESTE 910 VS+ER+ ++ DE E TE Sbjct: 859 VSLERV--CDVDDEDEGTE 875 >gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] Length = 878 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 TEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EV+ RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ Y I DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDNAARPEWLEEQYGI-RDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+GD+V+S+ + ++D ++ Sbjct: 723 GIKLAEGDRVVSLIVP----------------------------------RDDGAI---- 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 745 ---------------MTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841 >gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] Length = 888 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I+ D D Sbjct: 723 GINLNGDDKVVSL-IIPRGDGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVATTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937] gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937] Length = 877 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/903 (45%), Positives = 583/903 (64%), Gaps = 70/903 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+AN+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E+Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGI-HDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL++++++ + RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ IV + D Sbjct: 723 GINLQDDDRVVSL-IVPRGEGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE+VV ++R+ E DE Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 >gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] Length = 881 Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/919 (45%), Positives = 595/919 (64%), Gaps = 53/919 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIHSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q G+ KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E T +EQI+VTE+PYQVNKA ++EKIAEL+++K+I I+++ Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV+RR+ + L KAR+R H+L GLA+A +N+DEV+ IIR S + A +L+ R Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISR 413 Query: 421 SWNASDIKDLIDLIDDSSYTI---------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471 W ++ +++ L+D ++ GSD YLS Q AILELRL RLTGL + Sbjct: 414 PWKLNN--EILGLLDAAARPAELAAEFGIKGSD--YYLSPEQVDAILELRLHRLTGLATE 469 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ NE L ++I E L I++S RL+ +I++EL V+ + RRT I D++ ED Sbjct: 470 EVINEYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLED 529 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L Sbjct: 530 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILC 589 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +V+ A Sbjct: 590 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEE---DKFVIMA 646 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L++F + SG IA+ L DE++ V+ N+I+L + G+ VRF S Sbjct: 647 TAGGIVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAES 706 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 A+R GR + GVRGI LA L D DE + EE Sbjct: 707 AVRAM-GRLATGVRGIKLA-----------LTNDIADDESAV--------------EIEE 740 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 ++ + +++ NI + + + ILT ++ G+GKRT ++ +R+ KG+ + Sbjct: 741 VSDDNAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIK 800 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 VS+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA+DE V Sbjct: 801 VSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHV 858 Query: 892 VSVERIRESEIVDEAESTE 910 VS+ER+ ++ DE E +E Sbjct: 859 VSLERV--CDVDDEDEGSE 875 >gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] Length = 890 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/900 (45%), Positives = 578/900 (64%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A+I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ SW ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG +L+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEYGI-RDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 >gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] Length = 889 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/905 (46%), Positives = 576/905 (63%), Gaps = 71/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ DI ++ LME I GPDFPTGA+I GR GI AY TGRG + +R + Sbjct: 188 SEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVYVRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSTDGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPED-DE 846 Query: 906 AESTE 910 E E Sbjct: 847 FEGEE 851 >gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320] gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320] Length = 877 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/892 (45%), Positives = 569/892 (63%), Gaps = 69/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR + Sbjct: 188 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 247 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+V+E+ Sbjct: 248 IETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ AF+ R EVV RRT Sbjct: 308 KRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D V+ +IR +P P A+ L+ + W+ + +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLERA 427 Query: 435 DDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 DS+ G DG YL+E Q +AIL+LRL +LTGL + + +E L ++I Sbjct: 428 GDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQIA 487 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++K + + PRRT I E D+ ED I E++VVT+SH Sbjct: 488 ELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQ 547 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 548 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 607 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E +V AT G V++ L DF Sbjct: 608 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGK---FVFMATASGTVKKTPLQDF 664 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+ +L + G+ VRF +R GR + GVR Sbjct: 665 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGVR 723 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L D+V+S+ I+ + D Sbjct: 724 GMKLVDDDKVVSL-IIPRGEGD-------------------------------------- 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ NR+ +G+ + VS+ N G +V Sbjct: 745 --------------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVGAI 788 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + DQI+++++ GTL+R V+E+ I R T+GV + T +DE VV ++R+ Sbjct: 789 QVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRV 840 >gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] Length = 884 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/900 (45%), Positives = 576/900 (64%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVTPTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 >gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] Length = 883 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/892 (45%), Positives = 569/892 (63%), Gaps = 69/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 14 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 74 RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 134 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR + Sbjct: 194 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQAD 253 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I+VTEIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+V+E+ Sbjct: 254 IETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVEI 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN L+ T +Q F +NMVAL+ +P+ L I+ AF+ R EVV RRT Sbjct: 314 KRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRTI 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D V+ +IR +P P A+ L+ + W+ + +++ Sbjct: 374 FELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLERA 433 Query: 435 DDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 DS+ G DG YL+E Q +AIL+LRL +LTGL + + +E L ++I Sbjct: 434 GDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQIA 493 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++K + + PRRT I E D+ ED I E++VVT+SH Sbjct: 494 ELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQ 553 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 554 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 613 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E +V AT G V++ L DF Sbjct: 614 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGK---FVFMATASGTVKKTPLQDF 670 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+ +L + G+ VRF +R GR + GVR Sbjct: 671 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGVR 729 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L D+V+S+ I+ + D Sbjct: 730 GMKLVDDDKVVSL-IIPRGEGD-------------------------------------- 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ NR+ +G+ + VS+ N G +V Sbjct: 751 --------------ILTVTENGYGKRTVQSEYPTKNRATQGVISIKVSERN--GKVVGAI 794 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + DQI+++++ GTL+R V+E+ I R T+GV + T +DE VV ++R+ Sbjct: 795 QVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDELVVGLQRV 846 >gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999] Length = 885 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/897 (45%), Positives = 576/897 (64%), Gaps = 69/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K Sbjct: 6 KEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TV+F PNYDG+ + P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GCVA+I+NP ++ L+E I GPDFPT A+I GR GI+ AY TGRG I +R Sbjct: 186 NLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIYLRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE+ +E I+V E+PYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R+VIE Sbjct: 246 AEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR SA+V+LN LY T LQ++F +NMVAL+ +P+ F L L+ F+ R EVV RRT Sbjct: 306 VKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y L KARDRAH+L GLAIA+AN+D V+ +I+ SP+P A+ +L + W D+ ++++ Sbjct: 366 VYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEMLER 425 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + Y I DG YL+E Q +AIL+LRL +LTGL D I +E L I Sbjct: 426 AGDDAARPDWLEPEYGI-RDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDVI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL +++DE RRT I D++ ED I RED+VVT+SH Sbjct: 485 AELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQ+RGGKG+S M+DEDF+ L + +TH +L FS+ G +Y KV+ Sbjct: 545 EGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARG+ ++NIL L +GERIT I+P E + YV AT +G V++ +L+ Sbjct: 605 QLPLASRNARGRPIVNILPLEEGERITAILPIKE---FVDGKYVFMATTNGTVKKTELTQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ L+ +E++ V+ +++I+L + G+ VRF +R GR + GV Sbjct: 662 YSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPM-GRTATGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L + +V+S+ + G+ +T+ +N Sbjct: 721 RGIRLEEDQKVVSLIVP------------------------QGEGAVLTATEN------- 749 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 G+GKRT ++ +R+ KG+ + VS+ N G +V Sbjct: 750 ----------------------GYGKRTDIAEYPAKSRATKGVVSIKVSERN--GLVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VN++D+I+L+SD+GTL+R E+ R T+GV + T ++E VV ++RI E E Sbjct: 786 VQVNEDDEIMLISDQGTLVRTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVE 842 >gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341] gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341] Length = 880 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/909 (45%), Positives = 575/909 (63%), Gaps = 86/909 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI-------- 710 L F + +G IA+ L D ++ VE E+DI+L +K G+ VRF PI Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTK 718 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVRGI L +GDQV+S+ IV D D Sbjct: 719 GGVRPM-GRTAAGVRGIKLVEGDQVVSL-IVPKNDGD----------------------- 753 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ILTV+E G+GKRT+ ++ +R+ +G+ + Sbjct: 754 -----------------------------ILTVTENGYGKRTTLDEYPAKSRATQGVVSI 784 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 VS+ N G++V V + D+ +++++ GTL+R V E+ R T+GV + T++ E Sbjct: 785 KVSERN--GSVVGAVQVTEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGES 842 Query: 891 VVSVERIRE 899 VV ++RI E Sbjct: 843 VVGLQRIDE 851 >gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217] gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217] Length = 908 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/921 (45%), Positives = 575/921 (62%), Gaps = 92/921 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDA+ R+AQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 QKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+ID P + ++ LME I GPDFPT A I GR GI +AY TGRG V+R + Sbjct: 188 TEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRAVMRSKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 368 ELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG +L+E Q +AILELRL RLTGL + I +E L I I Sbjct: 428 DDAARPEWLEPEYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIVIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL V ++ RRT I E +DM ED I ED+VVT+SH G Sbjct: 487 LLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVVTLSHTG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GERIT I+P E ++ +++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVRE---YADDKFIIMATAHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708 +G IA+ L D+++ V+ +DI+L + G+ VRF Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAET 723 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 I A+R GR + GVRGI L G +V+S+ + Sbjct: 724 GEEIIALRPM-GRTATGVRGIKLEDGQKVVSLIVP------------------------- 757 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 K D ++ LTV+E G+GKRT ++ +R KG Sbjct: 758 ---------KGDGAI-------------------LTVTENGYGKRTELNEYPAKSRGTKG 789 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + + V++ N GA+V V + D+I+L+SDKGTL+R P + I R T+GV I TA Sbjct: 790 VVSIKVTERN--GAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQGVTIIRTA 847 Query: 887 KDERVVSVERIRE---SEIVD 904 +DE+VV ++RI E EI+D Sbjct: 848 EDEKVVGLQRIEEIQTDEILD 868 >gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13] gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13] Length = 855 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/898 (44%), Positives = 566/898 (63%), Gaps = 67/898 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +N+ Y K ARI Sbjct: 11 VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A YD + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +H LL D+ KDTVDF PNYDGS EP+++ R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 SHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++ CV ++DNP+I +D L+ I GPDFPT +I G +GIK Y TGRG +V+R +H E+ Sbjct: 191 INACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVVMRARTHFEE 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 T G RE I++ E+PYQVNK +LEKIAELV +K++ I+DLRDESD+ G RVVIELKRG Sbjct: 251 TDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 DV+LN LY+ T LQ F +NMVAL +P+ L +L AF+ R EV+ RRT + L Sbjct: 311 EIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREVITRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R H+L GLA+A+ N+DE+++II+ SP+P A+ ELMQR W +S + ++ D + Sbjct: 371 RKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVSSMLKQGDAT 430 Query: 438 SYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 Y ++Y LS++Q + IL++RL RLTGL +D I NE + I + +D Sbjct: 431 QYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIADLID 490 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ R+ IIK EL +K+ RR+ IVE D+ ED I +DMVVT+SH GY+K Sbjct: 491 ILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDLIAPQDMVVTLSHTGYIK 550 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 L YRAQ+RGG+G+ +D+DF+ +F+ ++H ++L FSS G VY KV+ +P G Sbjct: 551 AQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYWLKVYEVPQG 610 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S +RGK ++N+ L GE+I I+ E +N Y+ AT G V++ LSDF Sbjct: 611 SRVSRGKPIVNLFPLMPGEKINAILTVKE---FVDNEYIFMATAKGTVKKTPLSDFSNPR 667 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SG IA+KLD+ D ++ ENDI+L + G+ V F S +R GRN+ GVRG+ L Sbjct: 668 KSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSM-GRNARGVRGMKL 726 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G +V+S+ I+E Sbjct: 727 TDGGEVLSLL---------------------------------------------IAENE 741 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q ++ +E G+GKRT +FR S R +G++A VS N G +V V D Sbjct: 742 AQS-------VMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRN--GQVVGAKLVGD 792 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +D+++L++ G LIR V+EIR RAT+GV + + + DE++ +E++ ESE DE + Sbjct: 793 HDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEKVAESEHHDEED 850 >gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] Length = 880 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/905 (46%), Positives = 587/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+DL D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + EEI Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILTV++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+] gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+] Length = 891 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] Length = 897 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758] gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758] Length = 897 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175] gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175] Length = 916 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R ++ Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL+ + DE RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GERIT I+P E + + Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ +++I+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V + GR + GVRGI L +G +V+S+ + Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K D ++ LTV+E G+GKRT ++ +R+ KG+ Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I TA Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848 Query: 888 DERVVSVERIRE 899 DE+VV ++RI E Sbjct: 849 DEKVVGLQRIDE 860 >gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola] gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola] Length = 885 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII] gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII] Length = 897 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10] gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM 10] gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004] gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038] gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 891 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEG---CHVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200] Length = 917 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/912 (45%), Positives = 573/912 (62%), Gaps = 87/912 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R ++ Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 IETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GERIT I+P E + + Y++ AT +G V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSNGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ +++I+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V + GR + GVRGI L +G +V+S+ + Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K D ++ LTV+E G+GKRT ++ +R+ KG+ Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N GA+V V ND+I+L+SDKGTL+R P + I R T+GV I TA Sbjct: 791 VSIKVSERN--GAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRTAS 848 Query: 888 DERVVSVERIRE 899 DE+VV ++RI E Sbjct: 849 DEKVVGLQRIDE 860 >gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185] gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223] gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185] gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223] Length = 916 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R ++ Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL+ + DE RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GERIT I+P E + + Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ +++I+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V + GR + GVRGI L +G +V+S+ + Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K D ++ LTV+E G+GKRT ++ +R+ KG+ Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I TA Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848 Query: 888 DERVVSVERIRE 899 DE+VV ++RI E Sbjct: 849 DEKVVGLQRIDE 860 >gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591] gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591] Length = 877 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/903 (45%), Positives = 581/903 (64%), Gaps = 70/903 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 188 SEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L++ Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGI-HDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL+++++ + RRT I D+ ED I E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLISEENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ IV + D Sbjct: 723 GINLQDDDRVVSL-IVPRGEGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GNVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DERVV ++R+ E DE Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 >gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] Length = 893 Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/917 (45%), Positives = 579/917 (63%), Gaps = 89/917 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A I N DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIA+LV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +R A A+V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GL++A+AN+DE++ +IR +P P A+ L+ R W+ + +++ Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL RLTGL I +E +L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + ILS+ RL+ +I++EL +D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L+ Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PI-------- 710 L F + +G IA+ L D ++ VE E+DI+L +K G+ VRF PI Sbjct: 659 LDQFSNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVK 718 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GVRG+ L KGDQV+S+ IV D D Sbjct: 719 GGVRPM-GRTASGVRGMKLVKGDQVVSL-IVPKTDGD----------------------- 753 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ILTV+E G+GKRT ++ +R+ +G+ + Sbjct: 754 -----------------------------ILTVTENGYGKRTQLSEYPAKSRATQGVVSI 784 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 VS+ N G +V ++ D+ +++++ TL+R V+E+ R T+GV + T++ E+ Sbjct: 785 KVSERN--GKVVGAVQADEGDEFMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEGEK 842 Query: 891 VVSVERIRESEIVDEAE 907 VV ++RI E +DEA+ Sbjct: 843 VVGLQRIEE---LDEAD 856 >gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] Length = 877 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/913 (45%), Positives = 569/913 (62%), Gaps = 76/913 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M WN+ YVK Sbjct: 6 KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNRPYVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGS+DGD AA RYTEC Sbjct: 66 CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL + + +L D+ K+T+DF PNYDG +EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++G + ++ PD +D L++II PDFPTG +I G +G++ Y TGRG +V+R Sbjct: 186 NLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ + R+ I+V E+PYQVNK +LE+IAE VREK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN L++ T LQ F +NMVAL +P+ L +L+ F+A R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+D+ + IIR +P P AR+ELM RSWN+S +K +++ Sbjct: 366 TIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVKSMLE 425 Query: 433 L--------IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 +DD + I SDG LSE Q IL++RL RLTGL +D I NE Sbjct: 426 RTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKILNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI 533 + +I E LDIL+ R+L II EL V E RR+ I D+E ED I Sbjct: 486 GDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRSEIELNASDLETEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY K PLS YRAQ+RGG+GR +++D+V LFI +TH +L FS Sbjct: 546 TPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFAT 652 G +Y KVW +P GS +RGK ++N+ L E+IT I+P E+ + +N Y+ AT Sbjct: 606 DRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNHYIFMAT 665 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L+DF ++G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 666 SQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAVRFDEND 725 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRG++L +VI+M L++GD Sbjct: 726 VRPM-GRTARGVRGMNLEDDQKVIAM-------------------------LVAGD---- 755 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + Q +LT +E GFGKRT ++ R KG+ A Sbjct: 756 -----------------------ESQSVLTATENGFGKRTPIAEYTRHGRGTKGMIAIQT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA VN+ND+I+L++ G LIR V+E+R RAT+GV + + + + Sbjct: 793 SERN--GKVVAATLVNENDEIMLITTGGVLIRTRVSEVREMGRATQGVTLIAVEEGTTLS 850 Query: 893 SVERIRESEIVDE 905 ++RI ES+I DE Sbjct: 851 GLQRILESDIEDE 863 >gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] Length = 888 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/900 (45%), Positives = 575/900 (63%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEEEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E DE Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847 >gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661] gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661] Length = 887 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 TEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E+ Sbjct: 248 VETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+ANLD ++ +IR + NP A+ L+ R W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDNAARPEWLEDEFGI-RDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E WN + AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATACGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+ D+V+S+ + EG I Sbjct: 723 GIKLAENDRVVSLIV--------------------------------------PQEEGAI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 745 ---------------MTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D+DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAE 841 >gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195] gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195] gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678] Length = 916 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/912 (44%), Positives = 574/912 (62%), Gaps = 87/912 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R ++ Sbjct: 188 TEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG +L+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPQYGI-RDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL+ + +E RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELVQILEEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GERIT I+P E + + Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGERITAILPVREYAA---DKYIIMATSHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ +++I+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V + GR + GVRGI L +G +V+S+ + Sbjct: 724 GEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K D ++ LTV+E G+GKRT ++ +R+ KG+ Sbjct: 758 --------KGDGAI-------------------LTVTENGYGKRTQLSEYPAKSRATKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N GA+V V ND+++L+SDKGTL+R P + I R T+GV I TA Sbjct: 791 VSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRTAG 848 Query: 888 DERVVSVERIRE 899 DE+VV ++RI E Sbjct: 849 DEKVVGLQRIDE 860 >gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703] gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703] Length = 878 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/895 (45%), Positives = 577/895 (64%), Gaps = 72/895 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E + SG RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE Sbjct: 248 VEADEKSG-RETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 367 IFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLER 426 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEFGI-RDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 L IL S RL+ +I++EL ++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 486 AALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLISQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 546 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRLYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ +IN+L L Q ERIT I+P E E N V AT G V++ L++ Sbjct: 606 QLPEASRGARGRPIINLLPLEQNERITAILPVREYEEGLN---VFMATASGTVKKTALTE 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GV Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D+V+S+ IV + D Sbjct: 722 RGINLQDDDRVVSL-IVPRGEGD------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV+E G+GKRT+ D+ +R+ KG+ + VS+ N G +V Sbjct: 744 ---------------ILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERN--GNVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA++ERVV ++R+ E Sbjct: 787 VQVDTTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAE 841 >gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] Length = 901 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/918 (44%), Positives = 577/918 (62%), Gaps = 94/918 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 EKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+ P++ ++ LME I GPDFPT A+I G+ GI+ AY TGRG ++R + Sbjct: 188 TEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKAIMRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 VEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +QS F +NMVAL +P+ F L +L+AF+ R EVV RRT Y Sbjct: 308 RGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREVVTRRTVY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH+L LA+A+AN+D ++ +I+ S +P A+ L+ + W +K +++ Sbjct: 368 ELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I DG +++E Q +AIL+LRL +LTGL + I E L I Sbjct: 428 DDAARPEWLEPEFGI-RDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + ++ RRT I +D+ ED I ED+VVT+SHLG Sbjct: 487 LLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARG+ ++N+L L +GERIT I+P E E Y++ AT HG V++ L+++ Sbjct: 607 PLASRQARGRPIVNLLPLQEGERITAILPVREYEEGK---YILMATSHGTVKKTALTEYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI-- 710 + +G IA+ L D+++ V+ ++I+L + G+ VRF P+ Sbjct: 664 RPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLD 723 Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRGI+L +G +V+S+ + Sbjct: 724 EEGKPQINFKGVRPM-GRGATGVRGIALEEGQRVVSLIVP-------------------- 762 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 K+DS+ ILTV+ GFGKRT ++ + Sbjct: 763 --------------KDDSA-------------------ILTVTANGFGKRTELAEYPAKS 789 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R+ KG+ + V++ N G +V V +ND+I+L+SDKGTL+R P + I R T+GV Sbjct: 790 RATKGVVSIKVTERN--GPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIGRNTQGVT 847 Query: 882 IFSTAKDERVVSVERIRE 899 I TA DE VV ++RI E Sbjct: 848 IIRTADDETVVGLQRIDE 865 >gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] Length = 878 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/893 (45%), Positives = 572/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N +I +D LM I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPEFGI-REGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I+ EL+ V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSR 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVF 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARGK ++NIL L +GERIT I+P E + ++ AT G V++ L Sbjct: 605 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ +G IA+ L D ++ V+ ++I+L +K G+ VRF +R GR + GV Sbjct: 662 FAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGM-GRTASGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L+ DQV+S+ + S EG+ Sbjct: 721 RGMKLSGEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 743 ---------------ILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D D+ ++++D GTL+R V+E+ R T+GV + T+++E VV+++RI Sbjct: 786 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRI 838 >gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] Length = 882 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] Length = 872 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/919 (45%), Positives = 574/919 (62%), Gaps = 78/919 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M WN+ YVK Sbjct: 6 KETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNRPYVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGS+DGD AA RYTEC Sbjct: 66 CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A +L D+ K+T+DF PNYDG +EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ G + ++ +PD +D L++II PDFPTG +I G TG++ Y TGRG +V+R Sbjct: 186 NLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIYGVTGVREGYRTGRGRVVMRAR 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ D R+ I++ E+PYQVNK +LE+IAE VREK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+V+LN L++ T LQ F +NMVAL +P+ L +L+ F+A R EVV RR Sbjct: 306 ELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P AR+ELM RSW++S ++ +++ Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVRSMLE 425 Query: 433 L--------IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 +DD Y I SDG LSE Q IL++RL RLTGL +D I NE Sbjct: 426 RTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRILNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDMEDEDC 532 + +I E LDIL+ R+L II EL +V E DT RR+ I D+E ED Sbjct: 486 GDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDT-RRSEIELNASDLETEDL 544 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I +DMVVT+SH GY+K PLS YRAQ+RGG+GR +++D+V LFI +TH +L F Sbjct: 545 ITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYILCF 604 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651 S G +Y KVW +P GS +RGK ++N+ L E+IT I+P E+ + N Y+ A Sbjct: 605 SDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENHYIFMA 664 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L+DF ++G IA+ LD D ++ +D++L + G+ VRF + Sbjct: 665 TSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAVRFDEN 724 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GV+G++L +VI++ L++GD Sbjct: 725 DVRPM-GRTARGVKGMNLEDEQKVIAL-------------------------LVAGD--- 755 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + Q +LT +E GFGKRT ++ R KG+ A Sbjct: 756 ------------------------ENQSVLTATENGFGKRTPIAEYTRHGRGTKGMIAIQ 791 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V++ND+I+L++ G LIR V+EIR RAT+GV + S + + Sbjct: 792 TSERN--GKVVAATLVSENDEIMLITTGGVLIRTRVSEIREMGRATQGVTLISIEEGTTL 849 Query: 892 VSVERIRESEIVDEAESTE 910 ++RI ES+I D E +E Sbjct: 850 SGLQRILESDIEDVPEGSE 868 >gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] Length = 878 Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 570/894 (63%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 AKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 SEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I+V EIPYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R+VIE+ Sbjct: 248 IEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LA+A+AN+D ++ +IRF+ P A+ L+ + W + +++ Sbjct: 368 FELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D S Y + +G YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLESQYGV-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL+ +I++ELL++K + RRT I E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLMEVIREELLAIKAQYSDARRTEITENTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E LYV AT G V++ L DF Sbjct: 607 LPEASRGARGRPIVNLLPLEQNERITAILPVREYEEG---LYVFMATASGTVKKTALQDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G +A+ L+ DE++ V+ N+++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGILAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFAEEAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+V+S+ I G+ E +T +N Sbjct: 723 GIKLNGEDKVVSLIIP------------------------RGEGEILTVTEN-------- 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 G+GKRT+ ++ I +R+ +G+ + VS+ N G ++ Sbjct: 751 ---------------------GYGKRTAENEYPIKSRATQGVISIKVSERN--GNVIGAI 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV ++R+ E Sbjct: 788 QVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAE 841 >gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4] gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4] Length = 907 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/916 (45%), Positives = 574/916 (62%), Gaps = 94/916 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R + Sbjct: 188 VEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSKAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE K Sbjct: 248 IEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIECK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L L++A+AN+DEV+ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 368 ELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLERAG 427 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + Y I DG YL+E Q +AILELRL RLTGL + I +E +L EI E Sbjct: 428 TDAARPEWLEEQYGI-RDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH G Sbjct: 487 LMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIAREDVVVTLSHEG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y+ KV++L Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARGK ++NIL L GERIT I+P DE S ++ AT G V++ L+ F Sbjct: 607 PHATRTARGKPIVNILPLEDGERITAILPV--DEFSPEK-FIFMATGDGTVKKTPLNQFA 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI---------- 710 + +G IA+ L D ++ V+ +++I+L +K G+ VRF P+ Sbjct: 664 NVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLD 723 Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRG+ LA+ DQV+S+ + Sbjct: 724 ENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIV--------------------- 761 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 S EG+ ILTV++ G+GKRT ++ Sbjct: 762 -----------------PSNEGD---------------ILTVTQNGYGKRTELSEYPTKG 789 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R +G+ + VS+ N G +V V + D++++++D GTL+R V+E+ R T+GV Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVT 847 Query: 882 IFSTAKDERVVSVERI 897 + TA+DE VV ++RI Sbjct: 848 LIRTAEDESVVGLQRI 863 >gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] Length = 892 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/896 (45%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] Length = 921 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/905 (45%), Positives = 578/905 (63%), Gaps = 70/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 49 ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 108 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R+AQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 109 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 168 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 169 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 228 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 229 SEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 288 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+V+E+ Sbjct: 289 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVEV 348 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 349 KRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRTI 408 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ + W+ ++ +++ Sbjct: 409 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLERA 468 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 469 GDDAARPEWLEPEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 527 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL +V+D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 528 ELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLSHQ 587 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 588 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 647 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 648 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 704 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRFP S +R GR + GVR Sbjct: 705 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVRSM-GRTATGVR 763 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD VIS+ IV + D Sbjct: 764 GINLGEGDSVISL-IVPRGEGD-------------------------------------- 784 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 785 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 828 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E +E Sbjct: 829 QVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 888 Query: 906 AESTE 910 +S E Sbjct: 889 LDSIE 893 >gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866] Length = 880 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + EEI Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1] gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1] Length = 856 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/910 (44%), Positives = 584/910 (64%), Gaps = 83/910 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 8 ILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+AA+YD + R+AQ +S+R L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL D+ K+TVDF NYDGS QEP VL R PN+LVNGG GIAVGMATNIP HNL Sbjct: 128 ARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D CVA++D+P++ +++L+E + PD PTG +I G GI A+ TGRG +V+R + Sbjct: 188 REVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGTAGIHQAFRTGRGRMVLRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ + DRE+IVVTE+PYQVNKA ++EKIAELV+E+R+ I++LRDESD++G R+V+ELK Sbjct: 248 VEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG + +++LN LYR+T +Q++F +N+VAL+ +P L +L+AF+ R EVV RRT Y Sbjct: 308 RGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQPRTLNLRQVLEAFIRHRREVVTRRTIY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI---- 431 L KAR+RAHVL GLA+A+AN+DEV+ +I+ S P A+ EL+ R W + +++ Sbjct: 368 ELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLERAG 427 Query: 432 -------DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 DL D + + +D +Y LSE Q +AIL+LRL RLT + +D I E ++L Sbjct: 428 AAATRPEDLAD--HFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLER 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL S RL+ +I++EL++++D+ R+T I E ++ ED I EDMVVT+S Sbjct: 486 IAELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PL YRAQRRGG+G+S M+DEDF+ LFI +TH ++L FSS G Y KV Sbjct: 546 HHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660 + LP GS +RG+ ++N+L L + ERI ++P F ED +V AT++G V++ Sbjct: 606 YELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFDEDH------FVFMATRNGTVKKT 659 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS F + SG IA++L D ++ E + +++L + G+ +RF S +R GR Sbjct: 660 PLSHFSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAM-GRT 718 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRGI L G +VI++ LI G Sbjct: 719 AGGVRGIRLESGQRVIAL-------------------------LILG------------- 740 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 EG+I LT +E G+GKRT D+ R G G+ ++ N G Sbjct: 741 -EGDI---------------LTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERN--GR 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V ++D+I+LVS GTL+R PV ++ R T+GV + S + E++V +ER+ Sbjct: 783 VVGAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAEQLVGLERV--- 839 Query: 901 EIVDEAESTE 910 E + E E+ E Sbjct: 840 EGLAEGEAPE 849 >gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] Length = 878 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/893 (45%), Positives = 572/893 (64%), Gaps = 69/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A I+N +I +D LM I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 ++IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + I +G +L+E Q +AILELRL RLTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPEFGI-REGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I+ EL+ V+D RRT I + D++ ED I +ED+VVT+S Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSR 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G Y KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVF 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARGK ++NIL L +GERIT I+P E + ++ AT G V++ L Sbjct: 605 QLPQASRTARGKPIVNILPLEEGERITAILPVSE---YSEDKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ +G IA+ L D ++ V+ ++I+L +K G+ VRF +R GR + GV Sbjct: 662 FAKVRANGLIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVRFNEEQVRGM-GRTASGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L+ DQV+S+ + S EG+ Sbjct: 721 RGMKLSGEDQVVSLIV--------------------------------------PSNEGD 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV++ G+GKRT ++ +R+ +G+ + VS+ N G++V Sbjct: 743 ---------------ILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D D+ ++++D GTL+R V+E+ R T+GV + T+++E VV+++RI Sbjct: 786 VQAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRI 838 >gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 885 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/896 (45%), Positives = 574/896 (64%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ SW ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] Length = 880 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/918 (46%), Positives = 593/918 (64%), Gaps = 52/918 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R ++E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERIRESEIVDEAESTE 910 S+ER+ ++ DE +S E Sbjct: 860 SLERVCDA---DEEDSLE 874 >gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS] gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS] Length = 875 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae] Length = 881 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/892 (46%), Positives = 572/892 (64%), Gaps = 70/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 14 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDA+ R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 74 RVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 134 AKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A ID+ +I ++ L+E I GPDFPT A+I GR GI +AY TGRG + IR ++ Sbjct: 194 SEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAIINGRRGIIDAYRTGRGKVYIRARAN 253 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 254 IEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 313 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+V+LN LY T LQ F +NMVAL +P L IL+AFV R EVV RRT Sbjct: 314 KRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQPRLLNLKEILEAFVRHRREVVTRRTI 373 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LA+A+AN+D ++ +IR + P A+ L+ R W ++ ++ Sbjct: 374 FELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIARPWQLGNVSAMLASA 433 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D++ Y + +G YL+E Q +AIL+LRL +LT L D I +E L +I Sbjct: 434 GDNAARPEWLEPQYGV-REGQYYLTEPQAQAILDLRLQKLTSLEHDKILDEYRELLKQIA 492 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL+S RL+ +I++EL +VK++ RRT I E D+ ED I +ED+VVT+SH Sbjct: 493 ALLYILTSPERLMEVIREELEAVKEQYRDVRRTEITENSADINIEDLINQEDVVVTLSHQ 552 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 553 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQ 612 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E + YV AT G V++ L DF Sbjct: 613 LPEASRGARGRPIVNLLPLEQNERITAILPVREFDDGH---YVFMATASGTVKKTSLKDF 669 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +N+++L + G+ VRF +A+R GR + GVR Sbjct: 670 SRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVVRFAENAVRPM-GRTATGVR 728 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD+V+S+ IV + D Sbjct: 729 GIKLHAGDKVVSL-IVPRGEGD-------------------------------------- 749 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 750 --------------ILTVTENGYGKRTEQSEYPTKSRATQGVISIKVSERN--GNVVGAI 793 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V DQI++++D GTL+R V E+ I R T+GV + TA+DE+VV ++R+ Sbjct: 794 QVEKTDQIMMITDAGTLVRTRVAEVSIVGRNTQGVTLIRTAEDEKVVGLQRV 845 >gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] Length = 866 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/896 (46%), Positives = 573/896 (63%), Gaps = 70/896 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D+P+I LD +M+II GPDFPT A+I GR GI Y TG+G +IR Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAIINGRAGIIQGYRTGKGRAIIRAR 245 Query: 254 SHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T D R+ I++TE+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVV Sbjct: 246 TEIE-TDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR ADVILN LY T +Q++F +NMVAL +P L IL+ F+ R EVV R Sbjct: 305 IELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A++ L+ + W +K ++ Sbjct: 365 RTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTML 424 Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + DD + G Y LSE Q +AILELRL RLT L +D I +E L Sbjct: 425 ERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKL 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E L+IL+S RL+ +I+ E + +K + RRT I+E D+ ED I E++VVT+S Sbjct: 485 IRELLEILASPERLMQVIRDEFVEIKTQFGDERRTEIIESQEDLTIEDLITEENVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK P+S Y+AQRRGGKG+S ++DEDFV+ L I STH ++L FS+ G +Y K Sbjct: 545 HQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKA 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP+ S +RG+ +INIL L +GE I ++P E + YV ATK G V++ L+ Sbjct: 605 YELPLASRISRGRPIINILPLAEGEEINAMLPVRE---YLDGYYVFMATKKGTVKKVPLN 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ LD D ++ V+ DI+L T G+ VRF + +R GR + G Sbjct: 662 AFSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPM-GRTARG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI + + VIS+ +V H D Sbjct: 721 VRGIRIEEEQAVISL-VVAHPDGT------------------------------------ 743 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ILT +E G+GKRTS ++R+S R G+G+ + V++ N G +V Sbjct: 744 ----------------ILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNERN--GKVVR 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D D+ +L++DKGTL+R VNE+ + R T+GV + + + E+VV +++I + Sbjct: 786 SVQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGMQKIED 841 >gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae 10810] Length = 880 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586] gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586] Length = 877 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/903 (45%), Positives = 580/903 (64%), Gaps = 70/903 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LM I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 188 SEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKDILAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+ N+D ++ +IR + P A+ L+ ++W + +++ Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGI-HDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL +++++ + RRT I D+ ED I +E++VVT+SH Sbjct: 487 ELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L Q ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ IV D D Sbjct: 723 GINLQDDDRVVSL-IVPRGDGD-------------------------------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV++ GFGKRT+ ++ + +R+ KG+ + VS+ N G +V Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+ DQI++++D GTL+R V+E+ I R T+GV + TA++ERVV ++R+ E DE Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847 Query: 906 AES 908 +S Sbjct: 848 LDS 850 >gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] Length = 880 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW +DI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + EEI Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEEI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010] Length = 875 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 879 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG YL+E Q +AIL+LRL +LTG+ + + +E +L EI Sbjct: 428 GDDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841 >gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586] gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586] Length = 894 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ VE E+DI+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV A+ D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] Length = 892 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/896 (45%), Positives = 572/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP + +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 843 >gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301] gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T] gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227] gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. W3110] gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536] gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A] gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94] gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11] gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22] gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1] gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989] gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9] gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088] gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736] gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W] gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli] gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli] gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K12 substr. W3110] gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 301] gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 2457T] gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227] gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536] gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A] gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94] gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11] gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22] gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli 55989] gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI1] gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088] gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W] gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T] gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W] gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431] gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112] gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B] gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14] gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68] gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180] gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357] gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11] gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520] gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482] gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120] gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863] gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1] gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167] gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v] gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74] gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9] Length = 875 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 879 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 577/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTG+ + + +E +L EI Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTSLTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 745 ---------------LTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDENVVGLQRVAE 841 >gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024] gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026] gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359] gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK2000] gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK966] gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354] gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185] gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299] gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli] gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli] gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli] gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli] gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli] gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli UMN026] gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. TW14359] gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042] gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185] gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354] gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212] gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101] gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89] gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687] gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905] gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G] gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125] gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044] gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299] Length = 875 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] Length = 899 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/905 (45%), Positives = 584/905 (64%), Gaps = 52/905 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 ILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL DL KDTVD+ NYDG+ + P VL + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 ARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHNM 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252 EV+DGC+A+ID+ + +D LME I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 188 VEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARHT 247 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + H EKT R+ I+VTE+PYQVNKA ++EKIAELV++KRI IA+LRDESD++G RVVI Sbjct: 248 IEHDEKTG--RDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S +V++N L+ T LQ++F +NMVAL+G +P + +L+AF+ R EVV RR Sbjct: 306 EVKRGESGEVVVNNLFAQTQLQNVFGINMVALDGGEPRTLNIKEVLEAFIRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GL +A++N+DEV+ +I+ SP+ A+ +L++R+W + +++ Sbjct: 366 TLFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLE 425 Query: 433 LIDDSS---------YTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +S + + + G Y LS Q +AILELRL RLTGL + + +E + Sbjct: 426 RAGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILE 485 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E IL+S RLL +I++EL +V+D+ RRT I LD+ ED I EDMVVTV Sbjct: 486 KIAELTAILASADRLLEVIREELTAVRDQFGETRRTEIQASHLDLSIEDLIAEEDMVVTV 545 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S GY K PLS Y+AQRRGG+G+S M+DED + L + STH +VL FS+ G VY K Sbjct: 546 SRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRGKVYWLK 605 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P S +RGK L+N+L L + E I I+P + + + Y+ FAT G V+R L Sbjct: 606 VYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDP---DSYIFFATAKGTVKRTSL 662 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + F + G IA+ L+ D ++ + + +L + G+ +RF S +R GR + Sbjct: 663 AQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM-GRTAR 721 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L G +VIS+ I + +LI + + Sbjct: 722 GVRGMRLLDGAEVISLII-------------------PRSQLID------------AEDQ 750 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + + + L + +ILT SE G+GKRT +F + R G+G+ A S+ N G+LV Sbjct: 751 DDAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERN--GSLV 808 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V +D+++L++DKGTL+R V+E+ I+SR T+GV++ + E +V RI E E Sbjct: 809 AAMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESESLVKTVRIDEPEE 868 Query: 903 VDEAE 907 VD AE Sbjct: 869 VDAAE 873 >gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] Length = 875 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTECEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846] Length = 882 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 584/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y GRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRAGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39] gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI39] Length = 875 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PGATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017] Length = 875 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] Length = 884 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus influenzae F3031] gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3031] Length = 882 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223] gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223] Length = 894 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV A+ D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407] Length = 875 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQ+NKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] Length = 878 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/892 (45%), Positives = 568/892 (63%), Gaps = 69/892 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+D+++ +IR + P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLELQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L ERIT I+P E ++ ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ +++I+L +K G+ VRF +R GR + GV Sbjct: 662 FSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L +GDQV+S+ IV D D Sbjct: 721 RGMKLMEGDQVVSL-IVPKTDGD------------------------------------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ D+ +++++ GTL+R V E+ R T+GV + T++DE+VV ++R Sbjct: 786 VQADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837 >gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] Length = 880 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 586/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D+ D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047] gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3047] Length = 880 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/918 (46%), Positives = 592/918 (64%), Gaps = 52/918 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+T++F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERIRESEIVDEAESTE 910 S+ER+ ++ DE +S E Sbjct: 860 SLERVCDA---DEEDSLE 874 >gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b] gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b] Length = 879 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/902 (45%), Positives = 584/902 (64%), Gaps = 72/902 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 REVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAI++AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 368 FELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEAEFGI-RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL +++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR++ GVR Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAM-GRSASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI +L GD ++ SL Sbjct: 723 GI-----------------------------------KLAEGD--KVVSLI--------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G +V Sbjct: 737 -------VPREEGAILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D+DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ +E V+E Sbjct: 788 QVDDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845 Query: 906 AE 907 E Sbjct: 846 EE 847 >gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218] Length = 877 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/892 (45%), Positives = 568/892 (63%), Gaps = 69/892 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+D+++ +IR + P A+ L+ R W ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L ERIT I+P E ++ ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNLLPLEDNERITAILPVTE---FSDDKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L D ++ V+ +++I+L +K G+ VRF +R GR + GV Sbjct: 662 FSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L +GDQV+S+ IV D D Sbjct: 721 RGMKLMEGDQVVSL-IVPKTDGD------------------------------------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV+E G+GKRT ++ +R+ +G+ + VS+ N G +V Sbjct: 743 ---------------ILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ D+ +++++ GTL+R V E+ R T+GV + T++DE+VV ++R Sbjct: 786 VQADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837 >gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146] gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146] Length = 878 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/894 (45%), Positives = 575/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 IEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 368 FELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALAEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H Sbjct: 723 GIKLAGDDRVVSL-IVPHG----------------------------------------- 740 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKR+S ++ +R+ +G+ + V++ N G++V Sbjct: 741 -----------EGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D+DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVEDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVE 841 >gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451] gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451] Length = 893 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/923 (44%), Positives = 574/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV A+ D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKAEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253] Length = 878 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171] gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ +A+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRV--AEPVDE 845 >gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3] gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3] Length = 918 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/921 (44%), Positives = 573/921 (62%), Gaps = 100/921 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R ++ Sbjct: 188 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S +RG+ ++N+L L+ GERIT I+P + ED+ Y++ AT +G V++ L+ Sbjct: 607 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------- 709 + +G IA+ L D+++ V+ +++I+L + G+ VRF Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNA 720 Query: 710 -----------ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 +R GR + GVRGI L +G +V+S+ + Sbjct: 721 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVP----------------- 762 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 K D ++ LTV+E G+GKRT ++ Sbjct: 763 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 786 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ KG+ + VS+ N GA+V V ND+I+L+SDKGTL+R P N + I R T+ Sbjct: 787 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 844 Query: 879 GVVIFSTAKDERVVSVERIRE 899 GV I TA DE+VV ++RI E Sbjct: 845 GVTIIRTASDEKVVGLQRIDE 865 >gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046] gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905] gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82] gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/901 (45%), Positives = 581/901 (64%), Gaps = 74/901 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E KT RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VI Sbjct: 248 VEVDGKTG--RETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RR Sbjct: 306 EVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLE 425 Query: 433 LIDDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH Sbjct: 486 AELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV+ Sbjct: 546 QGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++ Sbjct: 606 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTE 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GV Sbjct: 663 FNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L +GD+V+S+ + GD +T+ +N Sbjct: 722 RGIRLGEGDKVVSLIVP------------------------RGDGAILTATQN------- 750 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 ----------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VD Sbjct: 787 VQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVD 844 Query: 905 E 905 E Sbjct: 845 E 845 >gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908] gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908] Length = 905 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/915 (45%), Positives = 567/915 (61%), Gaps = 93/915 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ P VL R P +LVNG GIAVGMATNIP HNL Sbjct: 128 DKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+NPD+ ++ LME I GPDFPT +I GR GI +AY TGRG V+R + Sbjct: 188 NEVVSGCLALIENPDLTINELMEYIPGPDFPTAGIINGRKGIIDAYHTGRGRAVMRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+V+E+K Sbjct: 248 VEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +QS F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ W +++ +++ Sbjct: 368 ELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 428 DDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIAA 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K L+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S ARG+ ++NIL L++GERIT I+P + ED+ Y++ AT HG V++ L+ Sbjct: 607 PLASRTARGRPIVNILPLSEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708 + +G IA+ L D+++ V+ NDI+L + G+ VRF Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLD 720 Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 P + + A GR + GVRGI L G QV+S+ IV + D Sbjct: 721 PETGEEMIALRAMGRTATGVRGIKLEDGQQVVSL-IVPKGEGD----------------- 762 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 ILTV+E GFGKRT ++ +R Sbjct: 763 -----------------------------------ILTVTENGFGKRTDLAEYPAKSRGT 787 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KG+ + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I Sbjct: 788 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 845 Query: 885 TAKDERVVSVERIRE 899 TA+DE+VV ++RI E Sbjct: 846 TAEDEKVVGLQRIDE 860 >gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] Length = 915 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/916 (44%), Positives = 571/916 (62%), Gaps = 84/916 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G EWN+ Y K AR+ Sbjct: 15 INIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELGNEWNRSYKKSARVV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+S+R LL++GQGNFGSVDGD AA RYTE R+ + Sbjct: 75 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDSAAAMRYTEVRMTRL 134 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV F PNYDGS +EP VL A+YPN+LVNG GIAVGMATNIP HNLGEV Sbjct: 135 ASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAVGMATNIPPHNLGEV 194 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D A+ID+P++D ALM+ I GPDFPTG I G+ GI + Y TGRGS++IR + IE Sbjct: 195 IDATCALIDDPELDPRALMQYIPGPDFPTGGSIHGQAGIVSGYETGRGSVIIRAKTVIET 254 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +E I+V E+PYQVNKA ++E+IAELVREK++ I+DLRDESDR+G RVVIE+KR Sbjct: 255 RKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDESDREGMRVVIEIKRDH 314 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ADV+LNQL+++T++QS F +N +AL +P +L L AF+ R EVV RRT + LN Sbjct: 315 QADVVLNQLFKHTAMQSSFGINALALVDGRPVTLSLKAFLVAFLKHRREVVTRRTIFELN 374 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI---D 435 KA+ RAH+L GLA+A+AN+D ++ +IR + A+ LM W ++ ++ + Sbjct: 375 KAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERWERGPVEAMLARALGEN 434 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D +G LS Q +AIL++RL RLTGL + I E + EI IL+S Sbjct: 435 DVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEEILKEIAYLKGILASDG 494 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L+ +I+QELL +K+ PRRT IVE + D D I E+MVVTVSH GY+KR P Sbjct: 495 VLMDVIRQELLEIKERYANPRRTLIVEAVGDFSIADLIPEEEMVVTVSHGGYIKRQPSLA 554 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQRRGGKG+S ++DEDFV +F+ STH ++ F+ G V+K KV+ +P GS +RG Sbjct: 555 YQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGRVFKLKVYEIPSGSRLSRG 614 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L +GE++ I+P P E+ W + ++FAT+ G +++ LS++ I +G A Sbjct: 615 KAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFATRRGLIKKTVLSNYANIRTTGIRA 674 Query: 676 MKLDSRDEILSVETCTQEND---------------------------ILLTTKLGQCVRF 708 + L D+++ V D I+L + G+ VRF Sbjct: 675 INLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPEDESSADAAPGRIMLFAQGGKAVRF 734 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR S GVRG+ L D VI++ ++ D Sbjct: 735 ADEKVR-RVGRVSQGVRGMRLKGEDGVIALTVI--------------------------D 767 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 E + L LT++EKG+GKR+ + R +G+ Sbjct: 768 GEAVGQL-------------------------LTITEKGYGKRSDLSQYPTKGRGTQGVI 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 DV ++ G +V+ V++ D++++++D+GT++R V+ IR+A RAT GV + + A+ Sbjct: 803 GMDVR--DKTGNVVSALVVDEQDEVMVITDQGTVLRTKVDSIRVAGRATMGVRVLNVAEG 860 Query: 889 ERVVSVERIRESEIVD 904 ERVVSV R+ E+E VD Sbjct: 861 ERVVSVARLAEAEEVD 876 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 75/140 (53%), Gaps = 8/140 (5%) Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRF 708 T+ G +R+ LS + R + + +D RD+ ++S +++++++ T G +R Sbjct: 778 TEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGTVLRT 837 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +IRV AGR ++GVR +++A+G++V+S+A + A+ +E + + L GD Sbjct: 838 KVDSIRV-AGRATMGVRVLNVAEGERVVSVARL----AEAEEVDAFDEEGEPIAPLTEGD 892 Query: 769 TEEITSLKNDSSVEGNISEE 788 + +D + + SEE Sbjct: 893 ALGEDGVADDGVADASASEE 912 >gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli BL21(DE3)] gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)] gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489] gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + G+ +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGEGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7] gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7] Length = 944 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/921 (44%), Positives = 575/921 (62%), Gaps = 100/921 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 34 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 93 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 94 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 153 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 154 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 213 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R ++ Sbjct: 214 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 273 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 274 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 333 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 334 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 393 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 394 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 453 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 454 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 512 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHLG Sbjct: 513 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 572 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 573 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 632 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S +RG+ ++N+L L+ GERIT I+P + ED+ Y++ AT +G V++ L+ Sbjct: 633 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 686 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709 + +G IA+ L D+++ V+ +++I+L + G+ VRF P Sbjct: 687 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 746 Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + +R GR + GVRGI L +G +V+S+ + Sbjct: 747 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVP----------------- 788 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 K D ++ LTV+E G+GKRT ++ Sbjct: 789 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 812 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ KG+ + VS+ N GA+V V ND+I+L+SDKGTL+R P N + I R T+ Sbjct: 813 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 870 Query: 879 GVVIFSTAKDERVVSVERIRE 899 GV I TA DE+VV ++RI E Sbjct: 871 GVTIIRTASDEKVVGLQRIDE 891 >gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ +FV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIASFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073] gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88] gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a] gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972] gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA] gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101] gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206] gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073] gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli S88] gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli ED1a] gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82] gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA] gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972] gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034] gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101] gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972] gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146] gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C] gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3] gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1] gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3] gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327] gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1] gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252] gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263] gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2] gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206] Length = 875 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605] gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15] gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605] Length = 875 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509] Length = 875 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] Length = 875 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGG+G+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20] gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20] gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] Length = 880 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/902 (46%), Positives = 582/902 (64%), Gaps = 43/902 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A ID +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I++A Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+D D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P E + +VV AT G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEE---DKFVVMATAGG 650 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A+R Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI LA L D DE + E+I+ Sbjct: 711 M-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDISDD 744 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++S++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + VS+ Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VVS+E Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862 Query: 896 RI 897 R+ Sbjct: 863 RV 864 >gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1] gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1] Length = 875 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4] gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4] Length = 946 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/921 (44%), Positives = 575/921 (62%), Gaps = 100/921 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 34 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 93 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 94 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 153 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 154 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 213 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R ++ Sbjct: 214 TEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRALAE 273 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 274 VETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 333 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 334 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 393 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 394 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 453 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 454 DDAARPEWLEPEFGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 512 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHLG Sbjct: 513 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 572 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 573 YAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 632 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S +RG+ ++N+L L+ GERIT I+P + ED+ Y++ AT +G V++ L+ Sbjct: 633 PLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 686 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709 + +G IA+ L D+++ V+ +++I+L + G+ VRF P Sbjct: 687 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNP 746 Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + +R GR + GVRGI L +G +V+S+ + Sbjct: 747 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVP----------------- 788 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 K D ++ LTV+E G+GKRT ++ Sbjct: 789 -----------------KGDGAI-------------------LTVTENGYGKRTELSEYP 812 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ KG+ + VS+ N GA+V V ND+I+L+SDKGTL+R P N + I R T+ Sbjct: 813 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 870 Query: 879 GVVIFSTAKDERVVSVERIRE 899 GV I TA DE+VV ++RI E Sbjct: 871 GVTIIRTASDEKVVGLQRIDE 891 >gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1] gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] Length = 923 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/937 (43%), Positives = 570/937 (60%), Gaps = 108/937 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E+ G REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G RVV Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EVV R Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VVT+ Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY + Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----------------- 645 + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664 Query: 646 -----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 I E Q ILT Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+GTL Sbjct: 791 ASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +R V+E+ ++ R T+GV + A DE +V +ER++E Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQE 885 >gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] Length = 875 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T +DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRV--AEPVDE 845 >gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021] gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021] Length = 880 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/905 (46%), Positives = 585/905 (64%), Gaps = 49/905 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I SS IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+ Sbjct: 54 DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+QK LL DL K+TV+F PNYDG P VL R P +L NG Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R + +E REQI+V+E+PYQVNKA ++EKIAEL+REK+I I+++ Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S+++G R+ I++KR A +V+LN LY T +Q F +NMVAL+ +P F L I+++ Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A + R Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413 Query: 421 SWN-ASDIKDLIDL---IDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDIRN 475 SW SDI +L+DL D+ +G G YLS Q AILELRL RLTG+ +++ Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++I + L ILSS RL+ +I++EL VK + R T I D++ ED I + Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT+SH GYVK PL+ Y AQRRGGKG+S M++EDF+ L + +TH ++L FSS Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G +Y KV++LP S ARG+ ++NIL L + ERIT I+P + ED+ +VV AT Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDK------FVVMAT 647 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L++F + +G IA+ L DE++ V+ N+I+L + G+ VRF +A Sbjct: 648 AGGIVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENA 707 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI LA L D DE + E+I Sbjct: 708 VRAM-GRLATGVRGIKLA-----------LTNDISDDESAV--------------EIEDI 741 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + ++ ++ NI + + E ILT ++ G+GKRT ++ +R+ KG+ + V Sbjct: 742 SDDNAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKV 801 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + DQI+L++D GTL+R V+E+ I R T+GV + TA DE VV Sbjct: 802 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVV 859 Query: 893 SVERI 897 S+ER+ Sbjct: 860 SLERV 864 >gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1] gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1] Length = 890 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/902 (45%), Positives = 581/902 (64%), Gaps = 72/902 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I++ +I ++ALME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 REVINGCLAYIEDENISIEALMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG YL+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 428 GDDAARPEWLDPQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILSS RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI RL GD + SL Sbjct: 723 GI-----------------------------------RLAEGD--RVVSLI--------- 736 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + +E I+TV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 737 -------VPREEGAIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ +E V+E Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845 Query: 906 AE 907 E Sbjct: 846 EE 847 >gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] Length = 886 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/903 (46%), Positives = 559/903 (61%), Gaps = 72/903 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L+++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K +H +L DL K+TVDF NYDG+ + P VL R P +LVNG GIAVGMATNIP H Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252 NL EVV GC+A++ +PD+ +D LME I GPDFPTGA+I GR GI AY TGRG I +R Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAIINGRAGIIQAYRTGRGRIYVRAR 245 Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 V H EK D I+V EIPYQ+NKA ++E+IAELV+EK+I I +LRDESD+ G RV Sbjct: 246 AEVIHDEKRGKD--IIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG DV+LN LY T LQS+F +NMVAL +P+ L IL+AFV R EVV Sbjct: 304 VIELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQPKILNLKEILEAFVRHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YLL KAR+R H+L GLAIA+AN+D V+ +I+ SP+ A+ +L+ RSW D+ + Sbjct: 364 RRTVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGM 423 Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ D + DG YLS Q +AILELRL RLTGL + + NE Sbjct: 424 LERAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLR 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI E L+ILS RL +I++EL + E RRT I D+ ED I ED VVT+ Sbjct: 484 EIAEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEEDRVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGG G+S ++DEDFV L I STH ++L FS+LG VY K Sbjct: 544 SHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVYWLK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+++P+ +RG+ +IN+L L +GER+T+I+P E Y+ AT G V++ L Sbjct: 604 VYQIPLAGRNSRGRPMINLLPLEEGERVTSILPV---EDYTEGHYIFMATASGTVKKTAL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + G A++L+ D ++ T + D++L + G+ VRF +R GR + Sbjct: 661 INFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAM-GRTAR 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L GD E+ SL Sbjct: 720 GVRGIKL-------------------------------------GDGHEMISLI------ 736 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I E + +LTVSE G+GKRT +F R KG+ A S+ N G LV Sbjct: 737 --IPREGGR--------VLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERN--GTLV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V D DQ++L+S++GTL+R +EI + R T+GV + T DE +VSVERI E E Sbjct: 785 GAVQVFDGDQLMLISNQGTLVRTRADEISVLGRNTQGVRVIRTKTDESLVSVERIEEPED 844 Query: 903 VDE 905 DE Sbjct: 845 DDE 847 >gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] Length = 923 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/937 (43%), Positives = 570/937 (60%), Gaps = 108/937 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E+ G REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G RVV Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EVV R Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VVT+ Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY + Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----------------- 645 + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664 Query: 646 -----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 I E Q ILT Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 SE+GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+GTL Sbjct: 791 ASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +R V+E+ ++ R T+GV + A DE +V +ER++E Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQE 885 >gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227] Length = 878 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469] gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia fergusonii ATCC 35469] Length = 878 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 579/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 879 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/894 (45%), Positives = 575/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841 >gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 885 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/896 (45%), Positives = 572/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + T +DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPE 843 >gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] Length = 899 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/927 (44%), Positives = 579/927 (62%), Gaps = 98/927 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 GILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +H LL DL K+TVDF PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVV+GC+A+I NP++ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R + Sbjct: 187 LTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARA 246 Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 247 EIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +IR SP P A+ L RSW ++K ++D Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDK 426 Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + +G DG ++SE Q +AIL+LRL +LTGL + I E SL I Sbjct: 427 AGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL++ RL+ +I+ EL+ +K + RRT I D+ ED I E++VVT+SH Sbjct: 487 AELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L ERIT I+P + ED+ Y+ AT G V++ Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDK------YIFMATAFGTVKKTP 660 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L+ + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF Sbjct: 661 LTAYSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENG 720 Query: 709 -PI------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 P+ IR GR + GVRGI + +G +V+S+ + Sbjct: 721 NPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRVVSLIVP---------------- 764 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 K D ++ LTV+E G+GKRT D+ Sbjct: 765 ------------------KTDGAI-------------------LTVTENGYGKRTLLEDY 787 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T Sbjct: 788 PAKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNT 845 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVD 904 +GV++ T +E+VV ++RI E E+ + Sbjct: 846 QGVILIRTIDEEQVVGLQRIEEIEVTE 872 >gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197] gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197] gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] Length = 875 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+ ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 MEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627] gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627] Length = 875 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/893 (45%), Positives = 574/893 (64%), Gaps = 68/893 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S ++DEDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVEEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+ E VV ++R+ E Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEGENVVGLQRVAE 841 >gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86] Length = 875 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739] gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739] Length = 875 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+ ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] Length = 894 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] Length = 894 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] Length = 899 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/916 (44%), Positives = 570/916 (62%), Gaps = 93/916 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +H LL DL K+TVD+ NYDG+ + P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A+I+NPDI +D L++ I GPDFPT A+I G+ GI+ AY TGRG + IR + Sbjct: 188 NEVINGCLALINNPDITIDELIDYIPGPDFPTAAIISGKKGIEQAYKTGRGKVYIRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E +E I+V E+PYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+V+E+K Sbjct: 248 VETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY TS+Q++F +NMVAL+ +P+ L +L AFV R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQPKLLNLKEMLHAFVVHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L+ R W+ ++ +++ Sbjct: 368 DLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLERTG 427 Query: 436 DSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +S+ +G DG +LS Q +AILELRL RLTGL + I E L I E Sbjct: 428 ESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L ILSS RLL +I+ EL K++ RRT I D+ ED I ED+VVT+SH G Sbjct: 488 LLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDVVVTLSHEG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV++L Sbjct: 548 YVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARGK +IN+L L ERIT I+P E E N Y+ AT G V++ L+ + Sbjct: 608 PLASRAARGKPIINLLPLEANERITAILPVREYEE---NKYIFMATAFGTVKKTPLTAYS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--------------- 711 + SG IA+ L+ D ++ V+ N+I+L + G+ VRF S Sbjct: 665 RQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDENGNLVLD 724 Query: 712 ----------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRGI + +G +V+S+ + Sbjct: 725 ENGQPEIKFKGVRPM-GRTATGVRGIKMGEGQRVVSLIVP-------------------- 763 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 KND S ILTV+E G+GKRT+ D+ + Sbjct: 764 --------------KNDGS-------------------ILTVTENGYGKRTNLEDYPSKS 790 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R+ +G+ + VS+ N G +V V +ND+I+L+S++GTL+R V E+ R T+GV+ Sbjct: 791 RATQGVVSIKVSERN--GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGRNTQGVI 848 Query: 882 IFSTAKDERVVSVERI 897 + T +E VV ++RI Sbjct: 849 LIRTIDEELVVGLQRI 864 >gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103] gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103] gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355] Length = 880 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/902 (45%), Positives = 578/902 (64%), Gaps = 72/902 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR Sbjct: 188 REVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARGE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I +G YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEAQFGI-REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATASGTVKKTGLQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR + GVR Sbjct: 664 SRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA +ND V + Sbjct: 723 GIKLA---------------------------------------------QNDRVVSLIV 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G ++ Sbjct: 738 PRE--------EGAILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D+DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ +E V+E Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVEE 845 Query: 906 AE 907 E Sbjct: 846 EE 847 >gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75] gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75] Length = 875 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ T++DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRV--AEPVDE 845 >gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163] gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163] Length = 879 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ DI L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 TEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 428 GDDAARPEWLEPEFGI-RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841 >gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12] Length = 875 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I PDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] Length = 876 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/905 (46%), Positives = 560/905 (61%), Gaps = 69/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 12 VLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD + RMAQD+SLR L++GQGNFGS+DGD AA RYTE R+ Sbjct: 72 RIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF NYDGS Q PVVL R PN+L+NG GIAVGMATNIP HNL Sbjct: 132 SKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A IDNP+ID+D LME I GPDFPTGA+I GR GI AY TGRG I +R + Sbjct: 192 REVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 251 Query: 256 -IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I S ++ I++ EIPYQ+NKA ++E+IAELV+EK++ I +LRDESD+ G RVVIEL Sbjct: 252 VITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDESDKDGLRVVIEL 311 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG DV+LN LY T LQS+ +NMVAL +P L+ +++AFV R EVV RRT Sbjct: 312 RRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQPRTLNLLEMIEAFVRHRREVVTRRTV 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+R HVL GLAIA+ N+DE++ +I+ SP P A+ L+ + W + ++ +++ Sbjct: 372 YLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKPWQSGEVTGMLERA 431 Query: 435 -------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DD G G+ Y LS Q +AILELRL RLTGL + + E + +EI Sbjct: 432 GEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKLLQEYSDKLVEIAG 491 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L+IL RL +I+ EL + +E R T I + D+ ED I ED VVT+SH G Sbjct: 492 YLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVEDLITEEDRVVTISHGG 551 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGG GRS ++DEDFV L I STH ++L FS LG VY KV+ + Sbjct: 552 YAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILCFSDLGKVYWLKVFHI 611 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L++GERIT+I+P E ++ AT G V++ + F Sbjct: 612 PLASRNARGRPMVNLLPLDEGERITSILPV---EGYEEGHFIFMATARGIVKKTDMQQFA 668 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A++L++ D ++ D++L + G+ VRF A+R GR + GVRG Sbjct: 669 RQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRAM-GRTARGVRG 727 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L ++IS+ IV AD+ Sbjct: 728 IKLGDEHRLISL-IVPQADST--------------------------------------- 747 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ILTVSEKG+GKRT + +F R KG+ A + N G LV Sbjct: 748 -------------ILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMATTAKN--GPLVGAVQ 792 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDE 905 V+ D+I+L+SD+GT +R V EI R T+GV + T +DE++V + RI E + V E Sbjct: 793 VSTGDEIMLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKLVRLSRIVEDDDAVPE 852 Query: 906 AESTE 910 AES E Sbjct: 853 AESAE 857 >gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] Length = 871 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/895 (46%), Positives = 575/895 (64%), Gaps = 68/895 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ C+A++DNP++ LD +MEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAIINGRAGIIQGYRTGKGRVVIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE +R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR ADVILN LY +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 EIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ ++W +K +++ Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD + G SD LS Q +AILELRL RLT L +D I E L I I Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ ELL +K + RRT I D+ ED I E++VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y+AQRRGGKG+S ++DEDFV+ L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S +RG+ +INIL L +GE I ++P E + + YV AT++G V++ L+ Sbjct: 606 QLPLASRISRGRPIINILPLAEGEEINAMLPVREYQEGF---YVFMATRNGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ LD D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRP-TGRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + + VIS+ IV H + Sbjct: 722 RGIRIEEDQAVISL-IVAHPNGT------------------------------------- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILT +E G+GKRT ++R+S R G+G+ + V++ N G +V Sbjct: 744 ---------------ILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERN--GKVVRS 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 VND+D+ +L++DKGTL+R V+E+ I R T+GV + + + E VV +++I + Sbjct: 787 VQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKIED 841 >gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] Length = 875 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] Length = 894 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5] gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5] gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1] gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3] Length = 875 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10] gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10] gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] Length = 894 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126] Length = 904 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/920 (45%), Positives = 576/920 (62%), Gaps = 87/920 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K Sbjct: 6 KEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDG+ P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GCVA+I +P I +D LM I GPDFPT A+I GR GI++AY TGRG I +R Sbjct: 186 NLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYLRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE S +E IVV EIPYQVNKA ++EKIAELV+EKRI ++ LRDESD+ G R+VIE Sbjct: 246 AEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR SA+V+LN LY T LQ++F +NMVAL+ +P+ F L L+ F+ R EVV RRT Sbjct: 306 VKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P A++ L+ + W+ D+ +++ Sbjct: 366 VFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQMLER 425 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + + I DG YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 426 AGDDAARPDWLMPEFGI-RDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLEII 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL+S RL+ +I++EL V+DE RRT I D++ ED I +ED+VVT+S Sbjct: 485 AELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTLSR 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L+ Y AQRRGG+G+S M+DEDF+ L + +TH +L FS+ G +Y KV+ Sbjct: 545 EGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYWLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ ++NIL L + ERIT I+P E E +V+ AT +G V++ LS Sbjct: 605 QLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGK---FVLMATANGTVKKTDLSL 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------P 709 + + SG IA+ L+ DE++ V+ ++DI+L + G+ VRF P Sbjct: 662 YSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKRDP 721 Query: 710 ISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 + + A GR + GVRGI L G +V+S+ + Sbjct: 722 ETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVP------------------------ 757 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 K D + LT +E GFGKRT D+ +R+ + Sbjct: 758 ----------KGDGPI-------------------LTATENGFGKRTPLEDYPAKSRATQ 788 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ + VS+ N G +V V++ ++I+L+SD+GTL+R V E+ + R T+GV + T Sbjct: 789 GVVSIKVSERN--GKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVVGRNTQGVRLIRT 846 Query: 886 AKDERVVSVERIRESEIVDE 905 + E VV ++RI E E + E Sbjct: 847 VEGEHVVGLQRIEEVEELQE 866 >gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] Length = 895 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ + Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 EG+ +LTV+E G+GKRTS + Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587] gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587] Length = 894 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 573/923 (62%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica Y11] Length = 885 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/896 (45%), Positives = 571/896 (63%), Gaps = 70/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMV L+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVGLSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL + RL+ +I++EL+++K+ + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ N+++L + LG+ VRFP S +R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+VIS+ I GD E Sbjct: 723 GINLNGDDRVISLIIP------------------------RGDGE--------------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILTV+E G+GKRT+ ++ +R+ +G+ + VS+ N G +V Sbjct: 744 --------------ILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DQI++++D GTL+R V+E+ + R T+GV + T +DE VV ++R+ E E Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPE 843 >gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] Length = 879 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/917 (44%), Positives = 578/917 (63%), Gaps = 83/917 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 SEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAE 247 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFVCHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LAIA+AN+D V+ +IR + P A+ L+ + W ++ +++ Sbjct: 368 FELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLEQA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I +G YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEYGI-HEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL+ +I++ELL++K++ + RRT + E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLMEVIREELLAIKEQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S ++EDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKGKMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E N + AT G V++ KLS+F Sbjct: 607 LPEASRGARGRPIVNLLPLGQNERITAILPVREYEDGLN---IFMATASGIVKKTKLSEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712 + +G IA+ L+ DE++ V+ N+++L + G+ VRF + Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKG 723 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRGI L+ GD+V+S+ I G+ E + Sbjct: 724 VRAM-GRTATGVRGIKLSAGDKVVSLIIP------------------------RGEGEIL 758 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T +N G+GKRT+ ++ +R+ +G+ + V Sbjct: 759 TVTEN-----------------------------GYGKRTAESEYPTKSRATQGVISIKV 789 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G ++ V DQI++++D GTL+R V+E+ + R T+GV + TA+DE+VV Sbjct: 790 SERN--GNVIGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVV 847 Query: 893 SVERIRESEIVDEAEST 909 ++R+ E + +E +T Sbjct: 848 GLQRVAEPDDEEEDNNT 864 >gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5] gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5] Length = 889 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/901 (45%), Positives = 569/901 (63%), Gaps = 72/901 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGREGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQ++F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVMTMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ L+N+L L++GE ITT++P E Y+ AT +G V++ L Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDEGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA++LD D ++S E +++L + G+ RF S +R GR + Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ LA+G ++ISM Sbjct: 721 GVRGMRLAEGQKLISML------------------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I EE Q ILT SE+GFGKRT+ +F R G+G+ A ++ N G LV Sbjct: 738 --IPEEGSQ--------ILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SE 901 V D ++I+L+SD+GTL+R V+E+ R T+GV + A DE +V +ER++E SE Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEPSE 845 Query: 902 I 902 I Sbjct: 846 I 846 >gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1] gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1] Length = 919 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/921 (44%), Positives = 574/921 (62%), Gaps = 100/921 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I +P + ++ LM+ I GPDFPT A+I GR GI +AY TGRG ++R ++ Sbjct: 188 TEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRALAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+++ W ++ +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG YL+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPEYGI-RDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL + E RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PLS Y+AQRRGGKG+ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S +RG+ ++N+L L GERIT I+P + ED+ Y++ AT +G V++ L+ Sbjct: 607 PLASRTSRGRPIVNLLPLADGERITAILPVREYAEDK------YIIMATSNGTVKKTALT 660 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------P 709 + +G IA+ L D+++ V+ +++I+L + G+ VRF P Sbjct: 661 AYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNP 720 Query: 710 I-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + +R GR + GVRGI L +G +V+S+ + Sbjct: 721 VLDEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVP----------------- 762 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 K+D + ILTV+E G+GKRT ++ Sbjct: 763 -----------------KDDGA-------------------ILTVTENGYGKRTELSEYP 786 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +R+ KG+ + VS+ N GA+V V ND+I+L+SDKGTL+R P N + I R T+ Sbjct: 787 SKSRATKGVVSIKVSERN--GAVVGAVQVGGNDEIMLISDKGTLVRTPANGVSIIGRNTQ 844 Query: 879 GVVIFSTAKDERVVSVERIRE 899 GV I TA DE+VV ++RI E Sbjct: 845 GVTIIRTASDEKVVGLQRIDE 865 >gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] Length = 894 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ + Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 EG+ +LTV+E G+GKRTS + Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933] gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli O157:H7 str. EDL933] Length = 875 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/899 (45%), Positives = 577/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ ME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE +V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83] Length = 875 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 578/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+S G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSLQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] Length = 903 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/936 (44%), Positives = 580/936 (61%), Gaps = 99/936 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L + ERIT I+P E + + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710 F + +G IA+ L D ++ V+ E++I+L +K G+ VRF P+ Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPV 721 Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 +R GR + GVRG+ LA GDQV+S+ + Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 KND V LTV+E G+GKRT ++ Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R +G+ + VS+ N G++V V D D+ ++++D GTL+R V E+ R T+G Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845 Query: 880 VVIFSTAKDERVVSVERIRESEIVD-----EAESTE 910 V + TA+DE VV ++RI E E D EA++TE Sbjct: 846 VTLIRTAEDESVVGLQRIDEVEETDLPEGEEADATE 881 >gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] Length = 889 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/914 (44%), Positives = 572/914 (62%), Gaps = 78/914 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL DL K+TVDF PNYDGS QEP+V+ R PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP+ +D LMEII PDFPTG +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTGGIIYGINGVKDGYRTGRGRVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI+LKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIDLKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F++ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALINGQPKLCNLKDLIQVFISHRREVVTRRTVFTL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL---- 433 KAR+R HVL GLA+A+AN+DE + IIR +P P A+ ELM R+W++S +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSLVREMLTRAHAD 430 Query: 434 -----IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DD S+ +GSDG LSE QT+ IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDKIVAEYKEVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI + LDIL+ R+ II QEL ++K E RR+ I D+ ED I D Sbjct: 491 AEIDDLLDILARPERVSTIIGQELAAIKLEFGQTKLGARRSHIEHSSFDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH +L FS G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSDRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L +GE+IT ++ ++ S+ + YV AT G Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRSFPADQYVFMATSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L DF + G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRG++L +G VI+M L++ D E Sbjct: 731 -GRNARGVRGMNLEEGQGVIAM-------------------------LVAEDGE------ 758 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 Q +LT ++ GFGKRTS ++ R KG+ A S+ N Sbjct: 759 ---------------------QSVLTATQMGFGKRTSISEYTRHGRGTKGMIAIQQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++D+G L+R V+EIR RAT+GV + + ++ ++R Sbjct: 798 --GKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGRATQGVTLIGLDEGSQLSGLQR 855 Query: 897 IRESE-IVDEAEST 909 I E++ +D+ E T Sbjct: 856 IVENDATLDDTEKT 869 >gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] Length = 866 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/911 (45%), Positives = 576/911 (63%), Gaps = 82/911 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ALM I GPDFPTGA+I G GI AY TGRG I +R + Sbjct: 188 TEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGRGIAEAYRTGRGKIYLRARAE 247 Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + KT RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G RVVI Sbjct: 248 VVIDAKTQ--RETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL++FV+ R EVV RR Sbjct: 306 EIKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQPKILPLKEILQSFVSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L L +A+A++D ++ +IR +P A+ LM+ +W SD+ +++ Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425 Query: 433 LIDDSSYTIG----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 TIG D + +L+E Q +AIL+LRL +LTG+ D + +E Sbjct: 426 RSSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L I+I E + IL + RL+ IIK EL ++K++ PRRT I+ L++ +ED I +E Sbjct: 486 YKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDPRRTNIIVNNLEINNEDLINQE 545 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 D+VVT+SH GYVK PL+ Y AQRRGGKG+S ++ EDF+ L + +TH ++L FSS G Sbjct: 546 DVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDTILCFSSKG 605 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 +Y KV++LP S ARG+ +IN+L L + ERIT I+P E ++ +V AT G Sbjct: 606 SLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDAGH---HVFMATACGI 662 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L F + + G IA+ L+ DE++ V N+++L + G+ VRF S +R Sbjct: 663 VKKTALDCFSRPRKDGIIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRFSESKVRSV 722 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + G+RGI L D+++S+ I Sbjct: 723 -GRKAAGMRGIKLNDDDRLVSLII------------------------------------ 745 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 EG I LT+++ G+GKRT + ++ R+ KG+ + S+ N Sbjct: 746 --PQKEGEI---------------LTITKNGYGKRTLAEEYPTKGRATKGVLSIKTSERN 788 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V +DQI++++D GTL+R V+EI + R T+GV + TAK+E VV ++R Sbjct: 789 --GNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKNEHVVGLQR 846 Query: 897 IRES--EIVDE 905 + E +IV+E Sbjct: 847 VAEQDDDIVNE 857 >gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] Length = 891 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/920 (45%), Positives = 576/920 (62%), Gaps = 94/920 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A+I NPD+ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R + Sbjct: 188 TEVINGCLALIVNPDLTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRARAD 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE + +G RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID- 432 + L KARDRAH+L GLAIA+AN+D ++ +IR SP P A+ L RSW ++K +++ Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLEK 426 Query: 433 -----------LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 L DD DG ++SE Q +AIL+LRL +LTGL + I +E +L Sbjct: 427 AGEANVARPDWLADDLGI---RDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLL 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L IL+S RL+ +I+ EL+ +K + RRT I D+ ED I E++VVT Sbjct: 484 DLIAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y Sbjct: 544 LSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWL 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV++LP+ S ARGK ++N+L L ERIT I+P E E + Y+ AT G V++ Sbjct: 604 KVYQLPLASRAARGKPIVNLLPLEADERITAILPVREYEE---DKYIFMATAFGTVKKTP 660 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP------------ 709 L+ + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF Sbjct: 661 LTAYSRQRASGIIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDENG 720 Query: 710 -----ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 +R GR + GVRGI + +V+S+ + Sbjct: 721 NPEIRFKGVRPM-GRTATGVRGIKMTDEQRVVSLIVP----------------------- 756 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 K D ++ LTV+E G+GKRT D+ +R+ Sbjct: 757 -----------KTDGAI-------------------LTVTENGYGKRTQLEDYPSKSRAT 786 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 +G+ + VS+ N GA+V V+DND+I+L+S++GTL+R VNE+ R T+GV++ Sbjct: 787 QGVVSIKVSERN--GAVVGAVQVDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIR 844 Query: 885 TAKDERVVSVERIRESEIVD 904 T +E+VV ++RI E E+ + Sbjct: 845 TIDEEQVVGLQRIEEIEVTE 864 >gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] Length = 894 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33] gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33] Length = 894 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/923 (43%), Positives = 572/923 (61%), Gaps = 100/923 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ + Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV---------------- 761 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 EG+ +LTV+E G+GKRTS + Sbjct: 762 ----------------------PKTEGD---------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 843 TQGVTLIRTSEGESVVGLQRIDE 865 >gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] Length = 875 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/899 (45%), Positives = 577/899 (64%), Gaps = 70/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E VDE Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDE 845 >gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] Length = 864 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/904 (44%), Positives = 568/904 (62%), Gaps = 71/904 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 18 KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 77 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 78 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 137 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATNIP H Sbjct: 138 RMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 197 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ C+A++ NP+ +D L+EII PDFPT +I G G++ Y TGRG +V+RG Sbjct: 198 NLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTVGVREGYRTGRGRVVMRGR 257 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H+E G+R+ ++V E+PYQVNK +EKIAELV EK+I I+DLRDESD+ G RVVI Sbjct: 258 THVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVI 317 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EVV RR Sbjct: 318 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTRR 377 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P A+RELM R+W + +++++ Sbjct: 378 TVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVEEMLK 437 Query: 433 --LIDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ S ++ + DG LS+VQ + IL++RL RLTGL +D I NE + Sbjct: 438 RAAMEASRPEGLAVNFGLTPDG-YKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEIMDV 496 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL+ R+ II +EL ++ ++ RR+ IV D+ ED I +D+VVT+S Sbjct: 497 IADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQDLSLEDLITPQDVVVTLS 556 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY KV Sbjct: 557 HTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKV 616 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662 + +P GS +RGK ++N+ L GE+I I+P E DE N +V AT G V++ L Sbjct: 617 YEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFDE----NHFVFMATAKGTVKKTAL 672 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++F RSG IA+ LD D ++ E NDI+L + G+ V F +R GR + Sbjct: 673 TEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM-GRAAR 731 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L QVIS+ I AD D Sbjct: 732 GVRGMKLQGKQQVISLLI---ADND----------------------------------- 753 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +Q +L +E G+GKRT DFR S R +G++A S+ N G +V Sbjct: 754 --------------KQTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSERN--GIVV 797 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V D+D+I+L++ G LIR V EIR RAT+GV + + + E++ +E++ E++ Sbjct: 798 GARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKVVETDD 857 Query: 903 VDEA 906 +EA Sbjct: 858 DNEA 861 >gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60] Length = 878 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 573/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 IEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYTQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H Sbjct: 723 GIKLAGEDRVVSL-IVPHG----------------------------------------- 740 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ILTV++ G+GKR+ ++ +R+ +G+ + V++ N G++V Sbjct: 741 -----------EGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERN--GSVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ E Sbjct: 788 QVEDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVE 841 >gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396] gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396] Length = 879 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/899 (45%), Positives = 566/899 (62%), Gaps = 72/899 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH +L DL K+TVDF PNYDGS Q PVVL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A +DN DI +D LME I GPDFPT A+I GR GI AY TGRG I IR Sbjct: 186 NLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYIRAR 245 Query: 254 SHIE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE KTS +E IV+TEIPYQVNKA ++EKIAELV+EK++ I +LRDES ++G RV Sbjct: 246 YEIEQDKKTS--KETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG +ADV++N L+ T L+++F +NMVAL +P+ L ++ FV R EVV Sbjct: 304 VIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDCIECFVRHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L G A+A+AN+D V+ +I+ S A+ LM + W + + Sbjct: 364 RRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTGM 423 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ DD + G +G YLSEVQ ++IL+LRL +LTGL + I +E S+ Sbjct: 424 LERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSIIE 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E L+IL + RL+ +I++EL +V++E R T I D+ D I EDMVVT+ Sbjct: 484 QIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVTL 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL Y+AQ+RGGKG++ +RDEDFV L I ++H ++L F+S G +Y K Sbjct: 544 SHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYWLK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S +RG+ ++NIL L + ERITT++P E + + YV AT+ G V++ L Sbjct: 604 TYEIPQASRISRGRPIVNILPLAENERITTMLPVREYTA---DHYVFMATRQGTVKKTPL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + SG IA+ LD D ++ + D++L + G+ +RF +R GR + Sbjct: 661 ENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM-GRTAR 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI LA+G V+S+ I+ DA Sbjct: 720 GVRGIRLAQGQTVVSL-IIPQEDA------------------------------------ 742 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +ILT S KG+GKRT+ +F + R G+G+ A S+ N G LV Sbjct: 743 ----------------YILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN--GDLV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + V DQ++L+S++GTL+R +E+ I R T+GV + ++ E +V VERI E E Sbjct: 785 SAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPE 843 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 101/214 (47%), Gaps = 19/214 (8%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + G VK+ PL + R G + + + D + I V+ FSS G Sbjct: 646 VFMATRQGTVKKTPLENFSRPR--SSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKA 703 Query: 599 --YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + E R P+G ARG + + L QG+ + +++ P++++ Y++ A++ G Sbjct: 704 IRFNEDDVR-PMGR-TARG---VRGIRLAQGQTVVSLI-IPQEDA-----YILTASRKGY 752 Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S+F R G+ IA++ R+ +++S + ++L + G VR + Sbjct: 753 GKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISGDQLMLISNQGTLVRTRSDEV 812 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + GRN+ GVR I L++ + ++ + + + D Sbjct: 813 SIV-GRNTQGVRLIRLSESEDLVGVERIAEPEED 845 >gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044] gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] Length = 877 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA+ NDS V I Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] Length = 877 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA+ NDS V I Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum] Length = 878 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/894 (45%), Positives = 575/894 (64%), Gaps = 71/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 428 GDDAARPEWLEPEFGI-RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL + K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + + SG IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 722 GINLQGEDRVVSLII--------------------------------------PRGEGDI 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 744 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 787 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 840 >gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 904 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/912 (44%), Positives = 567/912 (62%), Gaps = 87/912 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP HN+ Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+NPD+ ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 188 NEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRAVMRAKAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+V+E+K Sbjct: 248 VETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ W ++ +++ Sbjct: 368 ELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 428 DDAARPEWLEPEYGI-RDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIAA 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K L+ Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++NIL L++GERIT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNILPLSEGERITAILPVRE---YADDKYIIMATAHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ E++I+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V A GR + GVRGI L +V+S+ + Sbjct: 724 GEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K+D + ILTV+E G+GKRT ++ +R+ KG+ Sbjct: 758 --------KDDGA-------------------ILTVTENGYGKRTDLSEYPAKSRATKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + +S+ N GA+V V +ND+I+L+SDKGTL+R P + R T+GV I TA+ Sbjct: 791 VSIKISERN--GAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAE 848 Query: 888 DERVVSVERIRE 899 +E+VV ++RI E Sbjct: 849 EEKVVGLQRIDE 860 >gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] Length = 884 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/905 (45%), Positives = 567/905 (62%), Gaps = 72/905 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVVAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPETLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + ILSS RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ L+N+L L+ E ITT++P E ++ AT G V++ L Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDSDEYITTMLPV---EEYTEGHFIFMATAKGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA++LD D ++S E +++L + G+ RF S +R GR + Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +G ++ISM Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I EE Q ILT SE+G+GKRT+ +F R G+G+ A + N G LV Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SE 901 V D ++I+L+SD+GTL+R V E+ R T+GV + AKDE++V +ER++E SE Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEPSE 845 Query: 902 IVDEA 906 + EA Sbjct: 846 VEGEA 850 >gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4] gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688] gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4] gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688] Length = 848 Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/902 (44%), Positives = 565/902 (62%), Gaps = 69/902 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP+ +D L++II PDFPT +I G G+K Y TGRG +V+RG Sbjct: 186 NLNEVVDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTLGVKEGYRTGRGRVVMRGR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H+E G+R+ +++ E+PYQVNK ++EKIAELV +K+I I+DLRDESD+ G RVVI Sbjct: 246 THVEDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +VILN LY+ T LQ F +NMVAL +P L +L+AF+ R EV+ RR Sbjct: 306 ELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P A++ LM R+W + +++++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLK 425 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D S G Y LS+VQ + IL++RL RLTGL +D I NE + I Sbjct: 426 RAAMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL+ R+ +I EL +++ + RR+ IV D+ ED I +D+VVT+SH Sbjct: 486 ADLLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY KV+ Sbjct: 546 TGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLS 663 +P GS +RGK ++N+ L GE+I I+P E DE N ++ AT G V++ L Sbjct: 606 EVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFDE----NHFIFMATAQGTVKKTALV 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F R+G IA+ LD D ++ E NDI+L + G+ V F +R GRN+ G Sbjct: 662 EFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRNTRG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L +VIS+ LI+ D Sbjct: 721 VRGMKLMAKQRVISL-------------------------LIAED--------------- 740 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +Q +L +E G+GKRT DFR S R +G++A S+ N G++VA Sbjct: 741 ------------DKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERN--GSVVA 786 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+D D+I+L++ G LIR V EIR RAT+GV + + ++E++ +E++ E++ Sbjct: 787 ARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDA 846 Query: 904 DE 905 DE Sbjct: 847 DE 848 >gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3] gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3] Length = 897 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/918 (44%), Positives = 568/918 (61%), Gaps = 89/918 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP HNL Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+I++P + ++ LME I GPDFPT A++ GR GI +AY TGRG V+R + Sbjct: 188 TEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAIVNGRKGIIDAYKTGRGRAVMRARAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 VETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ + W +K +++ Sbjct: 368 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I D +L+E Q +AILELRL RLTGL D I E L I Sbjct: 428 DDAARPEWLEPEFGI-RDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEVIAA 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L ILSS RL+ +I +EL V + RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L++GERIT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSEGERITAILPVRE---YADDKYIIMATSHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 +G IA+ L D+++ V+ +DI+L + G+ VRF P + Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARNAETGEVKIDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 V A GR + GVRGI L G V+S+ + Sbjct: 724 GEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVP-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 K D ++ LTV+E G+GKRT+ ++ +R KG+ Sbjct: 758 --------KEDGAI-------------------LTVTENGYGKRTALSEYPAKSRGTKGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N GA+V V DND+I+L+SDKGTL+R P + R T+GV I TA+ Sbjct: 791 VSIKVSERN--GAVVGAVQVGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRTAE 848 Query: 888 DERVVSVERIRESEIVDE 905 DE+VV ++RI EI DE Sbjct: 849 DEKVVGLQRI--DEIQDE 864 >gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] Length = 899 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/924 (44%), Positives = 579/924 (62%), Gaps = 94/924 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A+I NP++ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R + Sbjct: 188 TEVVNGCLALIQNPELTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRARAD 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE + +G RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 307 IKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L R W ++K ++D Sbjct: 367 VFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLDK 426 Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + +G DG Y+SE Q +AIL+LRL +LTGL + I E SL I Sbjct: 427 AGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLELI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL++ RL+ +I+ EL+ +K++ RRT I D+ ED I E++VVT+SH Sbjct: 487 AELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEENVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK L+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 547 EGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L ERIT I+P + E ++ Y+ AT G V++ L+ Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVRDYE---DDKYIFMATAFGTVKKTPLTA 663 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI 710 + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF P+ Sbjct: 664 YSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNPV 723 Query: 711 ------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760 IR GR + GVRGI + +V+S+ + Sbjct: 724 LDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRVVSLIVP------------------- 764 Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 KND + ILTV+E G+GKRT D+ Sbjct: 765 ---------------KNDGA-------------------ILTVTENGYGKRTQLEDYPSK 790 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T+GV Sbjct: 791 SRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQGV 848 Query: 881 VIFSTAKDERVVSVERIRESEIVD 904 ++ T +E+VV ++RI E E+ + Sbjct: 849 ILIRTIDEEQVVGLQRIEEIEVTE 872 >gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c] gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c] Length = 897 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/910 (44%), Positives = 570/910 (62%), Gaps = 87/910 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K A Sbjct: 8 ILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H LL DL K+TVDF PNYDG+ P VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 AKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ AY TGRG I +R + Sbjct: 188 TEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEAYRTGRGKIYMRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +E IVV EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+V+E+K Sbjct: 248 IEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T +Q++F +NMVAL+ +P+ F L+ IL+AFV R EVV RRT + Sbjct: 308 RNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLEILQAFVLHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P A+ L + W D+ D+++ Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDMLERAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + + + I DG YL+E Q +AIL+LRL +LTGL + I +E L I E Sbjct: 428 NDAARPDWLEPEFGI-RDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++DE RRT I D++ ED I RE++VVT+S G Sbjct: 487 LLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLSREG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK L+ Y +QRRGGKG+S M++EDF+ L + +TH +L FS+ G +Y KV++L Sbjct: 547 YVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++NIL L ERIT I+P E E YV+ AT +G V++ L + Sbjct: 607 PLASRNARGRPIVNILPLEANERITAILPIQEFEEGK---YVLMATANGTVKKTALVQYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 + +G IA+ L+ DE++ V+ +DI+L + G+ VRF P + Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + A GR + GVRGI L G +V+S+ IV D Sbjct: 724 GEEILALRPMGRTATGVRGIRLQDGQKVVSL-IVPQGDG--------------------- 761 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 ILT +E GFGKRT D+ +R+ +G+ Sbjct: 762 -------------------------------AILTATENGFGKRTPVEDYPAKSRATQGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N G +V VND+D+I+L+SD+GTL+R V E+ R T+GV + T + Sbjct: 791 VSIKVSERN--GKVVGAVQVNDSDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLIRTGE 848 Query: 888 DERVVSVERI 897 DE VV ++RI Sbjct: 849 DEHVVGLQRI 858 >gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894] gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894] Length = 878 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/902 (45%), Positives = 576/902 (63%), Gaps = 72/902 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ TL IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ ++W + +++ Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ + G+ +T+ +N Sbjct: 723 GIRLGEGDSVVSLIVP------------------------RGEGAILTATQN-------- 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 G+GKRT+ ++ +R+ KG+ + V+ N G +V Sbjct: 751 ---------------------GYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDD 845 Query: 906 AE 907 E Sbjct: 846 EE 847 >gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] Length = 879 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/899 (44%), Positives = 571/899 (63%), Gaps = 70/899 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Y K ARI Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H +L+DL K+TVDF PNYDGS EP+V+ AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE- 257 + GC+A+++NP + ++ L+ I PDFPT +I G TG++ Y TGRG +++R +H E Sbjct: 191 IAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVIMRARTHFED 250 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + S R+ ++V EIPYQVNK +++EKIAELV EK+I I+D+RDESD+ G R+VIELKR Sbjct: 251 MEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIELKR 310 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G +VILN LY+ T LQ F +NMVAL +P L +L+ F++ R EV+ RRT Y Sbjct: 311 GEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRREVITRRTVYE 370 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LIDLID 435 L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W ++ +++ L+ Sbjct: 371 LRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVVEEMLVRAAS 430 Query: 436 DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 D+S G S LS+ Q +AILELRL RLTGL +D I E + +I + L Sbjct: 431 DASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKILDLL 490 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ R+ II EL++++++ RR+ I+ ++ ED I +DMVVT+SH GY+ Sbjct: 491 DILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMVVTLSHGGYI 550 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K PL+ YRAQRRGG+G+ ++DEDFV LF+ +TH +L FS+ G Y KV+ P Sbjct: 551 KAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCYWLKVYEAPQ 610 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS +RGK ++N+ L +GERI ++P E ++ ++ AT+ G V++ LSDF Sbjct: 611 GSRVSRGKPIVNLFPLEEGERINAVLPVKE---FADDKFIFMATRAGTVKKTPLSDFSNP 667 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G IA+ L D ++ VE T ++DI+L + G+ V F +R GR + GVRG+ Sbjct: 668 RKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPM-GRGARGVRGMK 726 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L G VIS+ L A++D Sbjct: 727 LQAGQAVISL---LVAESD----------------------------------------- 742 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +Q +L +E GFGKRT DFR S R +G++A S+ N G ++ V+ Sbjct: 743 --------QQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERN--GVVIGAKLVD 792 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 DND+++L++ G LIR V+EIR RAT+GV + S E++ +E++ ES V EAE Sbjct: 793 DNDEVMLITTGGVLIRTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAES--VAEAE 849 >gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli] Length = 878 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/902 (45%), Positives = 579/902 (64%), Gaps = 73/902 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ +GK+A+KL DE++ V+ + E++++L + G+ VRF S++R G N+ GVRG Sbjct: 665 RLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L +GD+V+S+ + GD +T+ +N Sbjct: 724 IRLGEGDKVVSLIVP------------------------RGDGAILTATQN--------- 750 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 G+GKRT+ ++ +R+ KG+ + V++ N G +V Sbjct: 751 --------------------GYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQ 788 Query: 847 VNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+D DQ I++++D GTL+R V+EI I R T+GV++ TA+DE VV ++R+ +E V Sbjct: 789 VDDCDQIMMIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRV--AEPV 846 Query: 904 DE 905 DE Sbjct: 847 DE 848 >gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22] gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22] Length = 877 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/901 (45%), Positives = 578/901 (64%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA+ NDS V I Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7] gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7] Length = 921 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/948 (43%), Positives = 572/948 (60%), Gaps = 108/948 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E + G REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G RVV Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EVV R Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VVT+ Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY + Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------------ 644 + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664 Query: 645 ----------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 665 VVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 I E Q L E Sbjct: 781 ------------------------------------------IPESGAQILTASE----- 793 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+GTL Sbjct: 794 ---RGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +R V+E+ ++SR T+GV + A DE +V +ER++E D+ E E Sbjct: 849 VRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPE 896 >gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ] gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ] Length = 848 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/883 (44%), Positives = 567/883 (64%), Gaps = 60/883 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR+ Sbjct: 10 AVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD PAA RYTE R+++ Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQ 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 H LL DL K+TV F PNYD S EP VL A++PN+LVNG GIAVGMATNIP HNLGE Sbjct: 130 LTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++D +A+I NP + + L+E++ GPDFPTG I GR GI + YATGRG I IR +H+E Sbjct: 190 IIDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQIRAKAHVE 249 Query: 258 KTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + DRE IVVTEIPYQVNKA ++ IAELV+EK+I I+DLRDESDR G R+VI+LK+ Sbjct: 250 NSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLKK 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 +A+V+LNQLY++T +Q+ F +NM+A+ +P+ +L ++ F+ R E+V +RT + Sbjct: 310 DENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREMVTKRTLFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ LD V+ +IR S P A+ LM+ + D ++L Sbjct: 370 LKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLPRP 429 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 + Y + + LSE+Q +AILE+RL RLTGL RD I E + I +IL S + Sbjct: 430 AGY----EKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAE 485 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 ++ II EL +K+ RRT IV D+ ED I +MVVTVSH GY+KR + +Y Sbjct: 486 IMKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYIKRSAVDLY 545 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ R+EDFV LFI ST +LFFS +G VY+ KV+ +P GS +GK Sbjct: 546 RAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPEGSRTTKGK 605 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N++++ +GE+IT I+P + + +LY++ AT++G V++ L +++ I +G A+ Sbjct: 606 AVVNLVNVQEGEKITAILPV--KDLNREDLYLLMATRNGVVKKTPLVEYLNIRTTGINAV 663 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D+++SV + D+ L ++ G+ +RFP S R GR + GVRG++L D+VI Sbjct: 664 NLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPM-GRVTRGVRGMNLEARDEVI 722 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M +V D + G+ Sbjct: 723 GMEVV------------------------------------DPTATGST----------- 735 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I T++E GFGKRT ++R +R GKG+ + N G +V V VND +Q++++ Sbjct: 736 ---IFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN--GLVVGVMQVNDENQLMVI 790 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +D+G ++RVPV + R T+GV + T + E++V+V ++ E Sbjct: 791 TDQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAE 833 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 50/216 (23%), Positives = 100/216 (46%), Gaps = 15/216 (6%) Query: 535 REDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 RED+ ++ + G VK+ PL Y R G + V + + D + + + V S Sbjct: 630 REDLYLLMATRNGVVKKTPLVEYLNIRT--TGINAVNLDEGDKLISVALTDGQKDVFLAS 687 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFAT 652 G K R P + G+ + +N R I M + ++ + ++ + T Sbjct: 688 RHG-----KAIRFPESDARPMGRVTRGVRGMNLEARDEVIGMEVVDPTATGSTIFTL--T 740 Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R L ++ +R GK I +K +R+ ++ V EN +++ T G+ +R P Sbjct: 741 ENGFGKRTDLDEYRGQSRGGKGLITIKTTTRNGLVVGVMQVNDENQLMVITDQGKILRVP 800 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 ++ V GRN+ GVR + + ++++++A + D Sbjct: 801 VAGFSVI-GRNTQGVRVMVTEEQEKIVAVAKLAERD 835 >gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 877 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/901 (45%), Positives = 577/901 (64%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A +D+ DI ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA+ NDS V I Sbjct: 724 IKLAE---------------------------------------------NDSVVSLIIP 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E ILTV++ G+GKRT++ ++ +R+ +G+ + V++ N G++V Sbjct: 739 R--------GEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+D DQI++++D GTL+R V+E+ I R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 789 VDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4] gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4] Length = 908 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/918 (45%), Positives = 567/918 (61%), Gaps = 94/918 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP HN+ Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 188 NEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRSRAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +G RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IEEENG-RERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 307 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ W +K +++ Sbjct: 367 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEKAG 426 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I D YL+E Q +AILELRL RLTGL D I E L I Sbjct: 427 DDAARPEWLEPEFGI-RDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIAA 485 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL V RRT I +DM ED I ED+VVT+SHLG Sbjct: 486 LLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 545 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 546 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 605 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S ARG+ ++N+L L +GERIT I+P + ED+ Y++ AT HG V++ L+ Sbjct: 606 PLASRTARGRPIVNLLPLAEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 659 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708 + +G IA+ L D+++ V+ NDI+L + G+ VRF Sbjct: 660 AYSNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKID 719 Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 P + V A GR + GVRGI L G V+S+ IV + D Sbjct: 720 PETGEEVIALRAMGRTATGVRGIKLEDGQTVVSL-IVPKGEGD----------------- 761 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 ILTV+E G+GKRT ++ +R Sbjct: 762 -----------------------------------ILTVTENGYGKRTDLAEYPAKSRGT 786 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KG+ + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I Sbjct: 787 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 844 Query: 885 TAKDERVVSVERIRESEI 902 TA+DE+VV ++RI E ++ Sbjct: 845 TAEDEKVVGLQRIDEIQV 862 >gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069] gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069] Length = 879 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/900 (45%), Positives = 564/900 (62%), Gaps = 82/900 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G ++NK Y K Sbjct: 6 KEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF NYDGS EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A+IDNPDI + LME I+GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAIINGRAGIIDAYHTGRGKIYLRSR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 SH+E + SG ++ IVVTE+PYQVNKA ++EKIAELV++K+I I LRDESD+ G R+V Sbjct: 246 SHVETDEKSG-KQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRMV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL++G +V+LN LY + +Q++F +NMVAL+ +P F L + AFV R EVV R Sbjct: 305 IELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQPRLFNLKDAIDAFVTHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR++AHVL GLAIA+AN+D ++ +I+ SP P+ A+ LM R W + ++ Sbjct: 365 RTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVSTML 424 Query: 432 -----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +L + + DG LS+ Q +AIL+LRL +LTGL D I E L Sbjct: 425 ARAGTEACRPEELAAEFGF---HDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+E L IL S RLL +I++EL V++ RR+ I++ LD+ D I ED+VV Sbjct: 482 LGLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK LS Y+AQRRGG+G+S M+DEDF+ L + STH ++L FSS G VY Sbjct: 542 TLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 KV+ LP +RGK ++N+L L GERI I+P F ED+ +V AT +G V Sbjct: 602 LKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDK------FVFMATANGTV 655 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F + +G IA+ + DE++ V N I++ + G+ +RF + +R Sbjct: 656 KKTSLEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGM- 714 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG+ L +G +VI M + + Sbjct: 715 GRTARGVRGMKLPEGAKVIQMIVA----------------------------------EE 740 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D SV LT +E G+GKRT+ D + R G+G+ + +S+ N Sbjct: 741 DGSV-------------------LTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN- 780 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 GA+V+ PV D D+++L+S GTLIR V++IRI R T+GV + E +V ++RI Sbjct: 781 -GAVVSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGETLVGLQRI 839 >gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345] gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345] Length = 903 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/920 (45%), Positives = 568/920 (61%), Gaps = 94/920 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P VL R P +LVNG GIAVGMATNIP HNL Sbjct: 128 DKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG V+R + Sbjct: 188 NEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +G RE+I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+K Sbjct: 248 IEEENG-RERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEIK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 307 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LA+A+AN+D ++ +I+ SP P A+ +L+ W +K +++ Sbjct: 367 ELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEKAG 426 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I D YL+E Q +AILELRL RLTGL D I E L I Sbjct: 427 DDAARPEWLEPEFGI-RDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIAA 485 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +IK+EL V RRT I +DM ED I ED+VVT+SHLG Sbjct: 486 LLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 545 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 546 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 605 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ S ARG+ ++N+L L +GERIT I+P + ED+ Y++ AT HG V++ L+ Sbjct: 606 PLASRTARGRPIVNLLPLAEGERITAILPVREYAEDK------YIIMATSHGTVKKTALT 659 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708 + +G IA+ L D+++ V+ +DI+L + G+ VRF Sbjct: 660 AYSNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKID 719 Query: 709 PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 P + V A GR + GVRGI L G V+S+ IV + D Sbjct: 720 PETGEEVIALRAMGRTATGVRGIKLEDGQTVVSL-IVPKGEGD----------------- 761 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 ILTV+E G+GKRT ++ +R Sbjct: 762 -----------------------------------ILTVTENGYGKRTDLAEYPAKSRGT 786 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KG+ + VS+ N GA+V V +ND+I+L+S+KGTL+R P + R T+GV I Sbjct: 787 KGVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIR 844 Query: 885 TAKDERVVSVERIRESEIVD 904 TA+DE+VV ++RI E ++ D Sbjct: 845 TAEDEKVVGLQRIDEIQVPD 864 >gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 897 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/910 (44%), Positives = 571/910 (62%), Gaps = 87/910 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K A Sbjct: 8 ILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H LL DL K+TVDF PNYDG+ P VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 AKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ AY TGRG I +R + Sbjct: 188 TEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEAYRTGRGKIYMRARAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +E I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+V+E+K Sbjct: 248 IEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T +Q++F +NMVAL+ +P+ F L+ ILKAFV R EVV RRT + Sbjct: 308 RNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLDILKAFVLHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P A+ L + W D+ ++++ Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEMLERAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + + + I DG YL+E Q +AIL+LRL +LTGL + I +E L I E Sbjct: 428 NDAARPDWLEPEFGI-RDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++DE RRT I D++ ED I RE++VVT+S G Sbjct: 487 LLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVVVTLSREG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK L+ Y +QRRGGKG+S M++EDF+ L + +TH +L FS+ G +Y KV++L Sbjct: 547 YVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++NIL L + ERIT I+P E E YV+ AT +G V++ L + Sbjct: 607 PLASRNARGRPIVNILPLEENERITAILPIQEFEEGK---YVLMATANGTVKKTALVQYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---------------PIS 711 + +G IA+ L+ DE++ V+ +DI+L + G+ VRF P + Sbjct: 664 RPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKARDSETGAVKIDPET 723 Query: 712 AIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 + A GR + GVRGI L +G +V+S+ IV D Sbjct: 724 GEEILALRPMGRTATGVRGIRLQEGQRVVSL-IVPQGDG--------------------- 761 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 ILT +E GFGKRT D+ +R+ +G+ Sbjct: 762 -------------------------------AILTATENGFGKRTPVEDYPAKSRATQGV 790 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + VS+ N G +V VN++D+I+L+SD+GTL+R V E+ R T+GV + T Sbjct: 791 VSIKVSERN--GKVVGAVQVNESDEIMLISDQGTLVRTRVGEVSTVGRNTQGVRLIRTGA 848 Query: 888 DERVVSVERI 897 DE VV ++RI Sbjct: 849 DEHVVGLQRI 858 >gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313] Length = 827 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/891 (44%), Positives = 568/891 (63%), Gaps = 90/891 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ I V+I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G +K Y Sbjct: 8 KQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLGFTPDKAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA GEV+GKYHPHG+AA+YD+L RMAQ++SLR I+G GNFGS+DGDPPAA RYT Sbjct: 68 RKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDPPAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 128 EARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAVGMATNIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG + VID+P++ LD LM+II+GPDFPT +I+G+ GI++AYATG+G I++R Sbjct: 188 PHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDAYATGKGKIIVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ IE+ G++++IVVTE+PYQVNKA ++E+IAELV+EKRI I+DLRDESD+ G R+V Sbjct: 248 AVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDESDKDGMRIV 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFRE 366 IELK+ A+A+V+LNQLY+ T +Q F+VNMVAL ++P L + ++ +E Sbjct: 308 IELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQAIDYYIKHQE 367 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRTK+ L+KA RAH+L GL IA+ NLDEV+ IIR S N A+ L+QR Sbjct: 368 DVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEALIQRFG---- 423 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 SE Q +AI+++RL RLT L R+ I NE L EIK Sbjct: 424 ----------------------FSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKY 461 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 D+L+++S +L IIK+EL +K + RRT+I+ ++E ED I E+ VVT++H G Sbjct: 462 YKDVLANKSMVLDIIKKELEEIKQKYGDERRTKIIPDEDEIEIEDLIEVEENVVTLTHFG 521 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y++Q+RGGKG G+ R+EDFV LFI STH +LFF++ G VY+ K + + Sbjct: 522 YIKRLPTSTYKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEI 581 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P QA+G A++N+L L+Q E+ITT++P E + LY+ ATKHG V++ L +F Sbjct: 582 PEAGRQAKGTAIVNLLQLDQNEKITTVIPISEYKEG---LYLFMATKHGIVKKTDLMEFD 638 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I + G A+ L DE++ V +ILL T+ G +RF +R GR + GV+G Sbjct: 639 NIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRPL-GRAAQGVKG 697 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + D+V+ M S D E + Sbjct: 698 ITLEEDDEVVGM---------------------------SADIENAS------------- 717 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V+E+GFGKRT ++++ R GKGI V++ + G + + Sbjct: 718 -------------VLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTE--KTGKVAGMKL 762 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+++D ++++S G++IR+ +I + RAT+GV + + VVSV RI Sbjct: 763 VSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVARI 813 >gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032] gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032] Length = 878 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/902 (45%), Positives = 576/902 (63%), Gaps = 72/902 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W + +++ Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGI-RDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ + G+ +T+ +N Sbjct: 723 GIRLGEGDSVVSLIVP------------------------RGEGAILTATQN-------- 750 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 G+GKRT+ ++ +R+ KG+ + V+ N G +V Sbjct: 751 ---------------------GYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D DQI++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDD 845 Query: 906 AE 907 E Sbjct: 846 EE 847 >gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] Length = 876 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/900 (45%), Positives = 570/900 (63%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 DRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDGC+ +IDN +D L+EII GPDFPTG +I GR GI AY TGRG I +R + Sbjct: 188 TEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIYVRAKTE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIELK Sbjct: 248 VETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q++F +NMVAL +P+ F L +L+AF+ R EVV RRT Y Sbjct: 308 RGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRREVVTRRTVY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L GLAIA+AN+D ++ +IR SP P AR L+ + W+ ++ +++ Sbjct: 368 ELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG YL+ Q +AIL+LRL +LTGL + I +E SL +I E Sbjct: 428 DDAARPEWLTPEYGI-RDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL +VK + R T I D+ ED I +ED+VVT+SH G Sbjct: 487 LLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S M+DEDF+ L + +TH ++L FSS+G VY +V++L Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L +GERIT I+P E + + +++FAT G V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLGEGERITAILPVEEYSA---DKFILFATAKGTVKKTALNAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + SG A+ L DE++ V N+++L + G+ VRF +R GR + GVRG Sbjct: 664 RPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAM-GRTATGVRG 722 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L D+V+S+ + D D I + +R T + + +G IS Sbjct: 723 INLEGSDRVVSLIV-----PDEDGAILTVTENGFGKR-----TPQQEYPTKSRATKGVIS 772 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++S R+G +V Sbjct: 773 ------------------------------IKVSERNG---------------LVVGAVQ 787 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V +ND+I+L++++GTL+R V+E+ R T+GV + TA+ E+VV +ERI E E VDE+ Sbjct: 788 VGENDEIMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVE-VDES 846 >gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] Length = 879 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 574/894 (64%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A ID+ +I L+ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR + +P A+ L+ ++W + +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I +G YL+E Q +AIL+LRL +LTG+ + + +E L EI Sbjct: 428 GDDAARPEWLEPEFGI-REGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL+S RL+ +I++EL ++K + RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGG+G+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E ++ AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HIFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ ++ +L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D+V+S+ I EG+I Sbjct: 723 GINLQGEDRVVSLII--------------------------------------PRGEGDI 744 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LTV++ GFGKRT+ ++ +R+ KG+ + VS+ N G +V Sbjct: 745 ---------------LTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++R+ E Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAE 841 >gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] Length = 880 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/904 (45%), Positives = 572/904 (63%), Gaps = 81/904 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 SEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARAK 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + RE I+V EIPYQ+NKA ++EKIAELV++KRI I+ LRDESD+ G R+VIE+ Sbjct: 248 IETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+V+LN LY T LQ F +NMVAL+ +P+ L IL AF+ R EVV RRT Sbjct: 308 KRDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFINHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LA+A+ N+D + +IR + P A+ L+ ++W ++ +++ Sbjct: 368 FELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLEQA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG YL+E Q +AIL+LRL +LTGL + + +E L I Sbjct: 428 GDDAARPEWLEPEYGI-HDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLIG 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL + RL +I++ELL++KD+ + RRT + E D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILENPERLREVIREELLAIKDQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FS+ G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L Q ERIT I+P E E N + AT G V++ KLS+F Sbjct: 607 LPEASRGARGRPIVNLLPLEQEERITAILPVREYEDGLN---IFMATASGTVKKTKLSEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------PISAIRVFA 717 + +G IA+KL DE++ V+ N+++L + G+ VRF IRV Sbjct: 664 SRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKG 723 Query: 718 ----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 GR + GVRGI L+ GD+V+S+ I G+ E +T Sbjct: 724 VRAMGRTAAGVRGIKLSAGDKVVSLIIP------------------------RGEGEILT 759 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +N G+GKRT+ ++ +R+ +G+ + VS Sbjct: 760 VTEN-----------------------------GYGKRTAQSEYPTKSRATQGVISIKVS 790 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G ++ V DQI++++D GTL+R V+E+ + R T+GV + T +DE+VV Sbjct: 791 ERN--GDVIGAIQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEKVVG 848 Query: 894 VERI 897 ++R+ Sbjct: 849 LQRV 852 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N ++ ++L +E ++T+S +G+ K D+ R GKG A ++I E L Sbjct: 524 NSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSA---ARIKEEDFLER 580 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRES 900 + N +D I+ S+KG + + V ++ ASR +G V + ++ER+ ++ +RE Sbjct: 581 LLVANTHDTILCFSNKGKMYWMKVYQLPEASRGARGRPIVNLLPLEQEERITAILPVREY 640 Query: 901 E 901 E Sbjct: 641 E 641 >gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] Length = 900 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/920 (44%), Positives = 572/920 (62%), Gaps = 94/920 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L + ERIT I+P E + + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710 F + +G IA+ L D ++ V+ E++I+L +K G+ VRF P+ Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPV 721 Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 +R GR + GVRG+ LA GDQV+S+ + Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 KND V LTV+E G+GKRT ++ Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R +G+ + VS+ N G++V V D D+ ++++D GTL+R V E+ R T+G Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845 Query: 880 VVIFSTAKDERVVSVERIRE 899 V + TA+DE VV ++RI E Sbjct: 846 VTLIRTAEDESVVGLQRIDE 865 >gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6] gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6] Length = 903 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/920 (44%), Positives = 572/920 (62%), Gaps = 94/920 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A I+N I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E +L EI Sbjct: 426 AGTDAARPDWLEPQYGI-RDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE + IL+S RL+ +I++EL V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP+ S ARGK ++N+L L + ERIT I+P E + + ++ AT G V++ L Sbjct: 605 QLPLASRTARGKPIVNLLPLEESERITAILPVTEFSA---DKFIFMATGDGTVKKTSLDQ 661 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI-------- 710 F + +G IA+ L D ++ V+ E++I+L +K G+ VRF P+ Sbjct: 662 FSNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPVLDENGNPA 721 Query: 711 -----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 +R GR + GVRG+ LA GDQV+S+ + Sbjct: 722 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIVP------------------ 762 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 KND V LTV+E G+GKRT ++ Sbjct: 763 ----------------KNDGDV-------------------LTVTENGYGKRTVLSEYPT 787 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R +G+ + VS+ N G++V V D D+ ++++D GTL+R V E+ R T+G Sbjct: 788 KGRGTQGVVSIKVSERN--GSVVGAVQVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQG 845 Query: 880 VVIFSTAKDERVVSVERIRE 899 V + TA+DE VV ++RI E Sbjct: 846 VTLIRTAEDESVVGLQRIDE 865 >gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23] gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23] Length = 893 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/906 (45%), Positives = 567/906 (62%), Gaps = 33/906 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G G Y L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL S LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A M + + D + + ++ Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTAESVHID 769 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + C ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAE 907 I DE E Sbjct: 879 IPDETE 884 >gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 130b] Length = 863 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD + G Y LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K DQ + +V+ SG T +T+ +N + Sbjct: 722 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 758 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I E R +S R G+G+ + V++ N G +V Sbjct: 759 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2] gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1] gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] Length = 921 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/948 (43%), Positives = 571/948 (60%), Gaps = 108/948 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E + G REQI++TE+PYQ+NKA ++EKIAELV+EK+I I++LRDESD+ G RVV Sbjct: 246 AVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EVV R Sbjct: 306 IELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG YLS Q +AILELRL RLTGL + + +E + Sbjct: 426 ERAGADACRPEDLDPQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL++ +RL+ +I++EL +VK E RRT IV +D+ D I ED VVT+ Sbjct: 485 LIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S M+DED++ L + ++H ++L FSS G VY + Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYWLR 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------------ 644 + +P S ARG+ L+N+L L++GERIT ++ + N Sbjct: 605 TFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLEGE 664 Query: 645 ----------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 665 VVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGD 724 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ +++L + G+ +RF S +R+ GRN+ GVRG+ L KG Q+ISM Sbjct: 725 TLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISML--- 780 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 I E Q L E Sbjct: 781 ------------------------------------------IPESGAQILTASE----- 793 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +GFGKRT F R G+G+ A ++ N GAL+A V + ++I+L+SD+GTL Sbjct: 794 ---RGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQGTL 848 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +R V+E+ ++ R T+GV + A DE +V +ER++E D+ + E Sbjct: 849 VRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896 >gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum] Length = 907 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/922 (44%), Positives = 571/922 (61%), Gaps = 94/922 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R + Sbjct: 188 TEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +E I+V EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE K Sbjct: 248 IEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIECK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN LY T LQ+ F +NMVAL+ P+ F L +LK FV R EVV RRT + Sbjct: 308 RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGLPKLFNLKEMLKCFVDHRREVVTRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH+L LA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 368 ELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLERAG 427 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + Y I DG +L+E Q +AILELRL RLTGL + I +E +L EI E Sbjct: 428 TDAARPEWLEPEYGI-RDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+ VT+SH G Sbjct: 487 LMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIAREDVAVTLSHAG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK LS Y AQRRGGKG+S M++ED++ L + +TH +L FS+ G Y+ KV++L Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGKTYRLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARGK ++NIL L +GERIT I+P E ++ ++ AT G V++ LS F Sbjct: 607 PLASRTARGKPIVNILPLEEGERITAILPVTE---FSDDKFIFMATGDGTVKKTSLSSFA 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PI---------- 710 + +G IA+ L D ++ V+ ++I+L +K G+ VRF P+ Sbjct: 664 NVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPVLD 723 Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRG+ LA+GDQV+S+ IV D D Sbjct: 724 EHGQPEIKFKGVRAM-GRTASGVRGMKLAEGDQVVSL-IVPSNDGD-------------- 767 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 ILTV++ G+GKRT+ ++ Sbjct: 768 --------------------------------------ILTVTQNGYGKRTTLGEYPTKG 789 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R+ +G+ + VS+ N G + + D+ ++++D GTL+R V E+ R T+GV Sbjct: 790 RATQGVVSIKVSERN--GQVAGAVQTEEGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVT 847 Query: 882 IFSTAKDERVVSVERIRESEIV 903 + TA+DE VV ++RI E E V Sbjct: 848 LIRTAEDENVVGLQRIEEIEDV 869 >gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72] gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72] Length = 877 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/898 (44%), Positives = 563/898 (62%), Gaps = 70/898 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H LL D+ K+TVDF PNYDGS +EP++L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVVD C+ ++++P+ DL+AL+EI++ PDFPT +I G G+ Y TGRG +V+R Sbjct: 186 NLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVVMRAR 245 Query: 254 SHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE + DRE I+V E+PYQVNK +LE+IAELV EK++ I+++RDESD+ G RVV Sbjct: 246 THIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR +V+LN LY++T LQ F +NMVAL KP L +L F+ R EVV R Sbjct: 306 IELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KARDR H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W + +++++ Sbjct: 366 RTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLVEEML 425 Query: 432 DLIDDSSY-------TIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 SY G Y LS+ Q +AILELRL RLTGL +D I E + Sbjct: 426 SRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDL 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL+ R+ II +EL +++++ PRR+ IV ++ ED I EDMVVT+S Sbjct: 486 ITDLLDILARPERITAIIVEELTAIRNQFGDPRRSEIVLSTAEINIEDLITPEDMVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY KR PL+ YRAQRRGG+G+ M+DEDF+ LF+ +TH +VL FSS G Y KV Sbjct: 546 HTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF-ATKHGNVRRNKL 662 + +P G+ +RGK ++N+ L +GE+IT ++P +++ + VF AT G V++ L Sbjct: 606 YEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPV----QTFDEEHFVFMATSEGTVKKTAL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + F ++G IA+ LD D ++ V E D++L + G+ VRF S +R GR + Sbjct: 662 TAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPM-GREAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG++L G +VI+M + G+T Sbjct: 721 GVRGMTLEDGQRVIAMLVA------------------------KGET------------- 743 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 Q +LT +E G+GKRT ++ R KG+ A S N G LV Sbjct: 744 ---------------QSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GKLV 786 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+ D+++L+S LIR V +IR RAT+GV + + + + +E++ ES Sbjct: 787 GAVLVDPTDEVMLISTGAVLIRTKVQDIRELGRATQGVTLINLDEGTYLAGIEKVAES 844 >gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1] gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1] Length = 881 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/893 (44%), Positives = 559/893 (62%), Gaps = 68/893 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WNK Y K Sbjct: 6 KEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+Y+ + RMAQ +S+R L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYD S P VL AR P +LVNG GIAVGMATNIP H Sbjct: 126 RMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A+ID P+I++D LME I GPDFPTGA I GR GI AY TGRG I +R Sbjct: 186 NLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGAFINGRAGIVEAYKTGRGRIYMRAR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H+E G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++ I++LRDESD+ G R+VI Sbjct: 246 HHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG + DV++N ++ T LQS+F +NMVAL +PE L IL+ FV R EVV RR Sbjct: 306 ELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPELLNLKQILECFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+D V+ +IR SP+ AR +L+ SW D+ +++ Sbjct: 366 TIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMAMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD G ++G LS Q +AIL+LRL RLTGL + + +E L I Sbjct: 426 RAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLIAVI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L+IL + +RL+ +I +EL +V+D+ R T I+ D+ D I MVVT+S Sbjct: 486 AELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVVTISD 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL Y+AQRRGG+G+S M+DED ++ L + S+H +V+ FS+ G VY +V+ Sbjct: 546 TGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYWLRVF 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P+ S A+G+ ++N+L L +GE I+ ++P ++ + Y+ AT +G V++ + Sbjct: 606 EIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDE---MEDSYIFMATANGTVKKTAVEY 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ LD DE++ V + ENDI+L + G+ +RF S +R GR + GV Sbjct: 663 FARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAM-GRTAAGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI LA +V+S+ Sbjct: 722 RGIRLADEYKVVSLI--------------------------------------------- 736 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +E C +L E GFGKRT + DF + R G+G+ VS+ N G +V Sbjct: 737 VPQEGCS--------VLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN--GPVVGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D+I+L+SD+GTL+R +E+ R T+GV + DE +V VER+ Sbjct: 787 TQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVTLIRLMNDEHLVGVERV 839 >gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] Length = 887 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/897 (45%), Positives = 564/897 (62%), Gaps = 71/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W ++ + ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVVAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ L+N+L L+ GE ITT++P E Y+ AT +G V++ L Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDDGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA++LD D ++S E +++L + G+ RF S +R GR + Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +G ++ISM Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I EE Q ILT SE+G+GKRT+ +F R G+G+ A ++ N G LV Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D ++I+L+SD+GTL+R V+E+ R T+GV + AKDE +V +ER++E Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQE 842 >gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] Length = 893 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/907 (45%), Positives = 571/907 (62%), Gaps = 35/907 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G G Y L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL S LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A M + + + D + T+ DS Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG------VDMLEEAEE----TADDDIQTANTADSVHI 768 Query: 783 GNISEE-RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 G ++ C ILT +E G+GK T + R +G+ ++ N G L Sbjct: 769 GPTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRL 817 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900 VA + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 818 VAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASL 877 Query: 901 EIVDEAE 907 I DE E Sbjct: 878 SIPDETE 884 >gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] Length = 884 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/897 (45%), Positives = 561/897 (62%), Gaps = 71/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPETLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ L+N+L L+ E ITT++P E ++ AT G V++ L Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDSDEYITTMLPV---EEYTEGHFIFMATAKGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA++LD D ++S E +++L + G+ RF S +R GR + Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +G ++ISM Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I EE Q ILT SE+G+GKRT+ +F R G+G+ A + N G LV Sbjct: 738 --IPEEGSQ--------ILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D ++I+L+SD+GTL+R V E+ R T+GV + AKDE++V +ER++E Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQE 842 >gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] Length = 852 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/894 (46%), Positives = 564/894 (63%), Gaps = 70/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+AA+YD + RMAQ +++R LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVDF NYDGS QEP VL R PN LVNGG GIAVGMATN+P H Sbjct: 126 RMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+A+ID+ + +D LM + GPD PT A+I G GI+ AY TGRG +VIR Sbjct: 186 NLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAIINGVAGIREAYRTGRGRMVIRAR 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 E+ + + ++VTE+PYQVNKA +LEKIA LV+EKRI I +LRDESD+ G RVVI Sbjct: 246 CEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN LY++T L+S+ +NMVAL +P+ +L +L AF+ R EVV RR Sbjct: 306 ELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQPKLHSLRDVLDAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLI 431 T Y L KAR+R HVL GLA+A+AN+DEV+ +I+ SP P A+ L+ RSW S I +++ Sbjct: 366 TVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGITEML 425 Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + ++G G Y LSE Q +AIL+LRL RLTGL ++ I E L Sbjct: 426 QRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRDLLGS 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL S RL+ +I++ELL++K+ PRRT I +D+ ED I ED+VVT+S Sbjct: 486 INELLAILGSGDRLMAVIREELLAIKEHYADPRRTEITANRVDLTLEDLIQPEDVVVTLS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL Y+AQ RGGKG++ M+DEDF+ LF+ +TH ++L FSS G Y KV Sbjct: 546 HGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLCFSSHGKCYWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP GS +RGK ++N+L L+ ERI+ ++ E + + +V AT+ G V++ LS Sbjct: 606 YELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFD---DQHFVFMATRKGTVKKTPLS 662 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF + SG IA+ L D +++V E +I+L T G+ +RFP A+R GR + G Sbjct: 663 DFSRPRSSGIIAVNLQEDDWLVNVGITDGEREIMLLTDAGKAIRFPEDAVRPM-GRTAGG 721 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L G VI + LI G EG Sbjct: 722 VRGIQLGTGQSVIQL-------------------------LILG--------------EG 742 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +I LT +E G+GKRT ++ +R G+G+ + S+ N G +V Sbjct: 743 DI---------------LTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERN--GNVVG 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D+I+L+++ GTL+R+PV EI I SR T+GV + + +ER+ V RI Sbjct: 786 AAQVTEEDEIMLITNAGTLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVARI 839 >gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] Length = 862 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/891 (45%), Positives = 562/891 (63%), Gaps = 71/891 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 ILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +++R +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH LL D+ K+TVD+ NYDGS EP VL R PN+LVNGG GIAVGMATNIP HN+ Sbjct: 128 SRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D CVA+ID+ +D+DALM+ + GPD PT +I G GI AY TGRG +V+R + Sbjct: 188 REVIDACVALIDDDSLDVDALMQYLPGPDLPTAGIINGTAGIHEAYRTGRGRMVMRARAR 247 Query: 256 IEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE+ SG + +I+V+E+PYQVNKA +LEKIAELV+EKR+ I +LRDESD+ G RVVIE Sbjct: 248 IEEDDKSG-KARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +V+LN LY++T LQ++F +NMVAL +P+ L IL AFV R EVV RRT Sbjct: 307 LRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQPKLLNLRQILDAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAHVL GLA+A+AN+D V+ +I+ SP P A+ LM R W + D+++ Sbjct: 367 IFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLER 426 Query: 434 IDDSS-------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D ++ +G DG LS Q +AILELRL RLTGL ++ I E L +I E Sbjct: 427 ADATTPDDLSPDVGLGEDG-YRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + IL S RL+ +I++EL++++++ RR+ I+ LD+ ED I +D+VVT+SH G Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDERRSEIIPQALDLTLEDLITPQDVVVTLSHSG 545 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL YRAQRRGG+G+S M+D DFV LF+ +TH ++L FSS G Y KV+ L Sbjct: 546 YAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKCYWLKVYEL 605 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS Q+RGK ++N+L L ERI ++P E + + +V AT +G V++ LS F Sbjct: 606 PQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAH---FVFMATHNGTVKKTPLSHFS 662 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L + D ++ V D++L + G+ +RF S +R GR + GVRG Sbjct: 663 RPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAM-GRTAAGVRG 721 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L G +VI++ I L GD Sbjct: 722 IRLEPGQRVIALLI-----------------------LDDGD------------------ 740 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 IL+ + G+GKRT ++ R G G+ S N G +V Sbjct: 741 -------------ILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRN--GEVVGAVQ 785 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D+I+L++ GTL+R PV +I SR T+GV + S +DE +V +ERI Sbjct: 786 VADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISLDEDETLVGLERI 836 >gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c] gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c] Length = 893 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/906 (44%), Positives = 568/906 (62%), Gaps = 33/906 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G G Y L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A M + + D + + + ++ Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTADSVHID 769 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + C ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAE 907 I DE E Sbjct: 879 IPDETE 884 >gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12] gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12] Length = 893 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/906 (44%), Positives = 568/906 (62%), Gaps = 33/906 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G +K Sbjct: 3 ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY Sbjct: 63 YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + +H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP++D+D LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EKRI I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L IL+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+ L+ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422 Query: 431 IDL-------IDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G G Y L+EVQ R ILE+RL RLTGL +D + E L Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I+ ELL +++E RRT I D++ D I ED+VVT+ Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQ+RGG+GR+ V ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GE++ ++P E N YV FAT+ G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---YAENHYVFFATRQGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V E D+LL G+ VRF + +R GR + Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L +G++V+S+ I A M + + D + + + ++ Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPATG---------VDMLEEAEETADDDIQTANTADSVHID 769 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + C ILT +E G+GK T + R +G+ ++ N G LV Sbjct: 770 PTQDDILC---------ILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901 A + D+++L+SD GTL+R +EI R T+GV + + E++ +VER+ S Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878 Query: 902 IVDEAE 907 I DE E Sbjct: 879 IPDETE 884 >gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297] gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297] Length = 881 Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/903 (45%), Positives = 565/903 (62%), Gaps = 72/903 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DG +A+I+NPD+D+D LME I GPDFPTGA I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYINGRKGIVEAYRTGRGRIYMRAK 245 Query: 254 SHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + + EKT RE I+V EIPYQVNKA ++EKIAELV+EK+I I++LRDESD++G R+ Sbjct: 246 ADVVVDEKTG--RESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+LKRG S DV+LN LY T L+++F +N VAL +P+ L +L+AF+ R EVV Sbjct: 304 AIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQPKVLNLKEMLEAFIRHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR R H+L GLA+A+AN+DE++ +IR S A+ ++ RSW D+ + Sbjct: 364 RRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSAM 423 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ +D G D YLS Q + IL++RL +LTGL D + E + Sbjct: 424 LERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQIID 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E L IL+S RL+ +I++EL+ VKDE R+T I+ LD+ ED I EDMVVT+ Sbjct: 484 DIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEIMTSRLDLSMEDLITEEDMVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y AQ+RGGKGRS ++D+DF+ L + S+H ++L FS+ G VY + Sbjct: 544 SHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFGKVYWLR 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P S ARG+ ++N+L L ER+T I+P + + ++ AT G V++ L Sbjct: 604 VFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDY---FIFMATASGTVKKTSL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + SG IA+ LD D ++ V E +++L + G+ VRF +R GR + Sbjct: 661 DAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPM-GRTAR 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI SL++ SV Sbjct: 720 GVRGI----------------------------------------------SLEDGQSV- 732 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 IS QE E F+LT SE+G+GKRT +F R KG+ A + N G LV Sbjct: 733 --ISLIVPQE----EGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRN--GKLV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V + D+++L+SD+GTL+R V+EI R T+GV + A DE++VS+ERI E E Sbjct: 785 GAKQVFNGDEVMLISDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSIERIEEPED 844 Query: 903 VDE 905 V E Sbjct: 845 VVE 847 >gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby] gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Corby] gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] Length = 863 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/894 (46%), Positives = 566/894 (63%), Gaps = 69/894 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + SG R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVV Sbjct: 246 TEIETDENSG-RQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV R Sbjct: 305 IELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K ++ Sbjct: 365 RTIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAML 424 Query: 432 DLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + DD + G Y LSE Q +AILELRL RLT L +D I NE L Sbjct: 425 EKAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNL 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IKE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+S Sbjct: 485 IKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K Sbjct: 545 HQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKA 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 605 YQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLN 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + G Sbjct: 662 AFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI + K DQ + +V+ SG T +T+ +N Sbjct: 721 VRGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRT 757 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +I E R +S R G+G+ + V++ N G +V Sbjct: 758 HIDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVR 786 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I Sbjct: 787 SLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKI 840 >gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666] gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666] Length = 880 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/905 (44%), Positives = 569/905 (62%), Gaps = 77/905 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL DL K+TVDF PNYDGS QEP+V+ R PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP+ +D LMEI+ PDFPTG +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHMLKNPEASIDELMEIVPAPDFPTGGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F++ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIQVFLSHRREVVTRRTVFTL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R W++S +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSLVREMLTRTRAD 430 Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DD ++ +GSDG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI + LDIL+ R+ II +EL ++K E RR++I D+ ED I D Sbjct: 491 AEIDDLLDILAKPERVSIIIGEELSAIKLEFGQTKLGARRSQIEHSSFDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH +L FS+ G Sbjct: 551 MVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L +GE+IT ++P ++ S+ + YV AT G Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPADQYVFMATSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRG++L G VI+M L++ D Sbjct: 731 -GRNARGVRGMTLEDGQGVIAM-------------------------LVAED-------- 756 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++Q +LT ++ G+GKRTS ++ R KG+ A S+ N Sbjct: 757 -------------------EQQSVLTATQNGYGKRTSITEYTRHGRGTKGMIAIQQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + ++ ++R Sbjct: 798 --GKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIGLDEGSQLSGLQR 855 Query: 897 IRESE 901 I E++ Sbjct: 856 IVEND 860 >gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] Length = 861 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/906 (44%), Positives = 581/906 (64%), Gaps = 73/906 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E V+I EM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G ++NK Y Sbjct: 12 ESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMDVLGNDYNKSYK 71 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD AA RYTE Sbjct: 72 KSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSAAAMRYTE 131 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +H LL DL KDTVDF NYDGS EP VL AR PN+L NG GIAVGMATNIP Sbjct: 132 IRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSGIAVGMATNIPP 191 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++ C+ I+N DI +D L+EI+ GPDFPT +I G +GI+ AY TG+G I +R Sbjct: 192 HNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGIINGTSGIRQAYETGKGKIYLRC 251 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 VSHIE ++ I+VTE+PYQVNKA ++ KIAELV++KRI I LRDESD+ G +VI Sbjct: 252 VSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLRDESDKDGMSMVI 309 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +VILN LY+ T +Q++F +NMVA++ P+ TL IL+AF+A R +VV RR Sbjct: 310 ELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKGIPKLMTLKDILEAFIAHRRDVVTRR 369 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + LNKAR+R H+L GL++A+ N+D +V +I+ +P+ AR L+ ++W +S I +L+ Sbjct: 370 SIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAKTWRSSVIIELVG 429 Query: 433 LIDDSSYT---------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D + + + G LS+ Q +AIL+L+L RLTG +D I +E N L Sbjct: 430 NRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKDKIFDEFNELLER 489 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IK LDIL + RL+ +I +EL+ ++ R T+I+E +D+ ED I +E+ VVT+S Sbjct: 490 IKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLEDLIAQEERVVTLS 549 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK LS Y+AQ RGGKG+S ++DEDFV LFI ++H VL FSS G VY KV Sbjct: 550 HGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLCFSSFGKVYWLKV 609 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662 + LP+ S +RGK +IN+L L + E I I+P + DE N +V AT G ++ L Sbjct: 610 YDLPMASRISRGKPIINLLPLEKKEIINAILPILKFDE----NHFVFMATSSGTCKKTAL 665 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++F + + G IA++L + D+++ VE + E+DI+L + G+ +RF S +R+ GR ++ Sbjct: 666 TNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKESDVRI-VGRTAI 724 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI L GD+V+S+ IV + D+ Sbjct: 725 GVRGIKLVDGDKVVSL-IVTNQDSP----------------------------------- 748 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +LT +EKGFGKRT ++R+ +R G G+ + S N G ++ Sbjct: 749 -----------------VLTATEKGFGKRTHLNEYRVQSRGGSGVISIKTSDRN--GKII 789 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V + D+++L+S+KG L+R ++ I R T+GV++ + +KDE++VS+ ++ E+E Sbjct: 790 GAIQVTNEDEMMLISNKGILVRARAADVSIIGRNTQGVILINISKDEKLVSIAKVVETE- 848 Query: 903 VDEAES 908 D++ES Sbjct: 849 DDKSES 854 >gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619] gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619] Length = 923 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/936 (43%), Positives = 562/936 (60%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIVVTE+PYQ+NKA ++EKIAELV++K+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDGRPRVLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P AR L+ +W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG YLS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------- 640 + +P S ARG+ L+N+L L +GERIT ++ P++E Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIEGEV 665 Query: 641 -------------SSW----NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 W Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GR + GVRG+ L KG Q+ISM Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQQIISML---- 780 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I E Q ILT Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 871 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 14 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKK 73 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 74 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 133 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 134 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 193 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 194 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 253 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 254 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 313 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 314 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 373 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 374 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 433 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD + G + Y LSE Q +AILELRL RLT L +D I NE L I Sbjct: 434 KAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 493 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 494 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 553 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 554 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 613 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 614 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 670 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 671 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 729 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K DQ + +V+ SG T +T+ +N + Sbjct: 730 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 766 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I E R +S R G+G+ + V++ N G +V Sbjct: 767 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 795 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 796 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 855 Query: 904 DEAEST 909 +EAE + Sbjct: 856 EEAEDS 861 >gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602] gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602] Length = 883 Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/894 (45%), Positives = 567/894 (63%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKILGLKEILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ ++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLASA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L ++I Sbjct: 428 GDDAARPEWLEPQFGI-HDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILS+ RL+ +I++EL +++D+ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L+DF Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGR---HVFMATASGTVKKTALTDF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ +++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+S+ I+ D C ++ + TE + +G I Sbjct: 723 GIRLGEGDSVVSL-IIPRGDG------CI---LTVTQNGFGKRTESTEYPTKSRATQGVI 772 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S ++S R+G ++ Sbjct: 773 S------------------------------IKVSERNG---------------PVIGAI 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V++ DQI++++D GTL+R V+E+ R T+GV + TA DE VV ++R+ E Sbjct: 788 QVDEADQIMMITDAGTLVRTRVSEVSTVGRNTQGVTLIRTADDENVVGLQRVAE 841 >gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] Length = 879 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/903 (44%), Positives = 563/903 (62%), Gaps = 76/903 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYDGS EP+V AR+PN+LVNG GIAVGMATN Sbjct: 122 YTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+D C+A++ NP++D++ L+E + PDFPT I G G+K Y TGRG ++ Sbjct: 182 IPPHNMTEVIDACLALLKNPEMDIEELIEYVPAPDFPTAGFIYGLAGVKEGYRTGRGRVI 241 Query: 250 IRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R H E G+R+ I++ E+PYQVNKA +L KI E+VREKR+ I+++RDESD+ G Sbjct: 242 MRARCHFEDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R VIELKRG +ADV+LN+LY+ T +Q F +NMVA+ +P L ++ AF+ R EV Sbjct: 302 RAVIELKRGENADVLLNKLYKDTQMQDSFGINMVAIVDGQPRLLNLKQVMDAFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P A+RELM +SW + ++ Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVE 421 Query: 429 DLIDLIDDSSYTIG---------SDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNEL 477 D++ + D+S G +D + LS+ Q +AILELRL RLTG+ +D I E Sbjct: 422 DMLSRVSDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEY 481 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I + LDIL+ R+ II EL++VK + RR+ IV DM ED I ED Sbjct: 482 REVMDKIADLLDILAKPERVTAIIGDELVAVKTQFGDKRRSEIVTHTHDMSMEDLIPPED 541 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GY+K + Y+AQ+RGG+GR +D+DF+ +LF+ +TH +L FS+ G Sbjct: 542 VVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKGR 601 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654 VY KV+ +P GS ARGK ++N+L L +GE+I I+P F ED+ YV FAT + Sbjct: 602 VYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFAEDK------YVFFATAN 655 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ L+DF + + G IA+ LD D ++ V +D++L + G+ VRF + +R Sbjct: 656 GTVKKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVR 715 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR S GVRG+ L + QVISM Sbjct: 716 E-TGRASRGVRGMKLHENQQVISML----------------------------------- 739 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 ++E Q + LT +E G+GKRT ++ R +G+ A S+ Sbjct: 740 ----------VAENEQQSV-------LTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSE 782 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +VA VN D+I+++ G LIR V EIR R T+GV + + K ER+ + Sbjct: 783 RN--GKVVAATLVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKGERLAGL 840 Query: 895 ERI 897 RI Sbjct: 841 SRI 843 >gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] Length = 867 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/897 (44%), Positives = 557/897 (62%), Gaps = 78/897 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L D+ K+TVDF NYDGS EP V R P +LVNGG GIAVGMATNIP H Sbjct: 126 RMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+DGCVA+ID P++D+ LME I GPDFPT +I G GI+ AY TGRG I +R Sbjct: 186 NINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGARGIREAYRTGRGRIYMRAR 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + +E+ + IVVTEIPYQVNKA +LEKIAELV+EK+I I LRDESD+ G R+VIE Sbjct: 246 ASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+RG +VILN LY T LQ++F +NMVAL+ +P L +L+AF+A R EVV RRT Sbjct: 306 LRRGEVGEVILNNLYAQTQLQTVFGINMVALDKGQPRLMNLKQVLEAFIAHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431 Y L KAR+R H+L GLA+A++N+D ++ +I+ S NP AR++L+ W + ++ Sbjct: 366 LYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGMLER 425 Query: 432 --------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D ++D + D +LS Q +AIL+L+L RLTGL +D I E L + Sbjct: 426 AGADATRPDTLEDGLGLL--DDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEK 483 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L+IL + RL +++ EL+ ++D RRT I + D+ ED I +D+VVT+S Sbjct: 484 IAELLNILRNPDRLTEVVRDELVELRDSYGDERRTEIYQNQSDLTVEDLINEQDVVVTLS 543 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL Y+AQ+RGG+GRS M+DEDF+ LF+ TH ++L FSS G VY +KV Sbjct: 544 HAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYWKKV 603 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660 + LPIGS ARGK ++N+L L +GERI+ ++P F +DE +V AT +G V+R Sbjct: 604 YELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFTDDE------FVFMATANGTVKRT 657 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS+F + +G IA+ + D ++ V + DI+L G+ +RF +R GR Sbjct: 658 ALSNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPM-GRT 716 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRGI L+ D+ + +++ D D Sbjct: 717 AAGVRGIRLS--DEQTMVGLIIVEDGD--------------------------------- 741 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILT + G+GKRT+ D+ R G G+ + S N G Sbjct: 742 -------------------ILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRN--GG 780 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +V V D+I+L+S+ G L+R V +I + SR T+GV + E++V +ERI Sbjct: 781 VVGAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDDKEQLVELERI 837 >gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] Length = 862 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/898 (44%), Positives = 579/898 (64%), Gaps = 70/898 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+A+++N ++ +D L+++I GPDFPTG +I GR+GI +AY TGRG I +R Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGIINGRSGILDAYRTGRGKIYVRAR 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + +E I+VTE+PY VNKA ++EKIAELV++K+I I LRDESD+ G RVVI Sbjct: 246 TEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN LY +T +Q++F +NMVAL +P+ L IL AF+ R EVV RR Sbjct: 306 ELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQPKTLNLKEILAAFIDHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GLAIA+AN+D V+ +I+ S +P A++ L+ R W + ++++ Sbjct: 366 TVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLE 425 Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + + I D +L+E Q +AIL+LRL +LTGL + I +E L E Sbjct: 426 RAGGDAARPEWLEPEFGI-RDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGE 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S RL+ +I++EL VK + RRT I +++ ED I ED+VVT+S Sbjct: 485 IAELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PLS Y AQRRGG+G++ ++DEDFV L + +TH ++L FS+ G VY KV Sbjct: 545 HEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARG+ +IN+L L++ ERIT I+P +S ++ YV FAT G V++ +LS Sbjct: 605 YQLPEASRTARGRPIINLLPLDENERITAILPV---KSYDDDKYVFFATGDGTVKKTELS 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + SG A+ L+ D ++ V ++I+L + G+ VRF S +R GR + G Sbjct: 662 AYSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM-GRTATG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L + D+V+S+ + + A Sbjct: 721 VRGMKLGETDKVVSLIVPQNGGA------------------------------------- 743 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ILT +E G+GKRT ++ + +R+ G+ + V++ N G +V Sbjct: 744 ----------------ILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN--GKVVG 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+++D+I+L+++ GTL+R V+E+ + R T GV + TA+DE++VS+ER+ E E Sbjct: 786 AIQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPE 843 Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 21/208 (10%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VK+ LS Y R G + + + D + + I ++ ++ FS G KV R Sbjct: 653 GTVKKTELSAY--SRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAG-----KVVR 705 Query: 606 LPIGSPQARGKALINILSLNQGER---ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 ++ G+ + + GE ++ I+P N ++ AT++G +R L Sbjct: 706 FNESDVRSMGRTATGVRGMKLGETDKVVSLIVP-------QNGGAILTATENGYGKRTDL 758 Query: 663 SDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 +++ +R+ G I++++ R+ +++ + ++I+L T G VR +S + + GR Sbjct: 759 AEYPVKSRATLGVISIQVTERNGKVVGAIQVDESDEIMLITNAGTLVRTRVSEVGLI-GR 817 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747 N+ GVR I A+ ++++S+ V + D Sbjct: 818 NTAGVRLIRTAEDEKLVSLERVAEPEGD 845 >gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21] gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21] Length = 836 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 564/894 (63%), Gaps = 83/894 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR+ Sbjct: 9 SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R+++ Sbjct: 69 VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL E Sbjct: 129 LAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLTE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG VAVIDNP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R IE Sbjct: 189 VIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G R+VIELK+ Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIELKK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + ++LN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 309 DENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL++RL RLTGL RD I EL + I +IL+S + Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAE 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++Y Sbjct: 463 ILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARGK Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L+L E+ITTI+P E ++ +++ AT++G V++ + ++ G IA+ Sbjct: 583 AIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D++++V + D+LL + G+ +RF +R GR S GVRG++L D VI Sbjct: 640 NLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT-VGRVSRGVRGMTLEDEDVVI 698 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M I+ E T DS+ Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L+ Sbjct: 712 ---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLMLI 766 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +D+G ++RVPV I R T+GV + ++ERVV+V R+ E E DE E E Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGE 820 >gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] Length = 863 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/906 (45%), Positives = 571/906 (63%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K+I I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GL IA+AN+DE++ +I+ S P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD + G Y LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF S +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K DQ + +V+ SG T +T+ +N + Sbjct: 722 RGIRVEK-DQAVKSLVVVDP---------------------SGGT-ILTATENGYGKRTH 758 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I E R +S R G+G+ + V++ N G +V Sbjct: 759 IDEYR-----------------------------VSGRGGQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem] gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem] Length = 836 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 565/894 (63%), Gaps = 83/894 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR+ Sbjct: 9 SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R+++ Sbjct: 69 VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AH LL D+ K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL E Sbjct: 129 LAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLSE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG VA+IDNP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R IE Sbjct: 189 VIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G RVVIELK+ Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELKK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + +ILN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 309 DENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL++RL RLTGL R+ I EL + I +IL+S + Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLEREKIMEELREILKYIARLKEILASEAE 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++Y Sbjct: 463 ILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARGK Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L+L E+ITTI+P E ++ +++ AT++G V++ + ++ G IA+ Sbjct: 583 AIVNLLNLAANEKITTILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D++++V + D+LL + G+ +RF +R GR S GVRG++L D VI Sbjct: 640 NLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRT-VGRVSRGVRGMTLEGEDVVI 698 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M I+ E T DS+ Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L+ Sbjct: 712 ---IFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLMLI 766 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +D+G ++RVPV I R T+GV + ++ERVV+V R+ E E DE+E E Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGE 820 >gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 915 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/935 (43%), Positives = 581/935 (62%), Gaps = 110/935 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V+GC+A+I+N D+ +D LM I GPDFPTG +I GR+GI AY TGRGS+ +R + Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAE 247 Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + EKTS RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VI Sbjct: 248 VEVDEKTS--RETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S +++LN LY++T +Q+ F +NMVAL+ +P+ L IL AF+ R EVV RR Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+D V+ +IR S P A+ L+ R W ++ +++ Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425 Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D + + I +G YL+E Q +AIL+LRL +LTGL + I E SL Sbjct: 426 KAGDDAARPEWLEPEFGI-REGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDL 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+S Sbjct: 485 IAELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PLS Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV Sbjct: 545 HQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARG+ +IN+L L++GERIT I+P E ++ + YV FAT +G V++ LS Sbjct: 605 YQLPEASRGARGRPIINLLPLDEGERITAILPVKEYDA---DKYVFFATANGTVKKTSLS 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------ 717 DF + SG A+ L DE++ V+ N+I+L + G+ VRF + R A Sbjct: 662 DFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADATDEV 721 Query: 718 -------------------------------GRNSVGVRGISLAKGDQVISMAIVLHADA 746 GR + GVRGI L GD+V+S+ + Sbjct: 722 DTDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVP----- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 GD +T+ +N Sbjct: 777 -------------------RGDGAILTATEN----------------------------- 788 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ ++ +R +G+ + V + N G ++ V D DQI+L+++ GTL+R Sbjct: 789 GYGKRTALDEYPTKSRGTQGVISIKVDERN--GKVIDAIQVEDTDQIMLITNGGTLVRTR 846 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+E+ + R T GV + T +DE VV ++R+ ES+ Sbjct: 847 VSEVSVIGRNTGGVRLIRTGEDETVVGLQRVAESD 881 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P R A + + L G+++ +++ P + + ++ AT++G +R L ++ +R Sbjct: 751 PMGRTAAGVRGIKLGAGDKVVSLI-VPRGDGA-----ILTATENGYGKRTALDEYPTKSR 804 Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G I++K+D R+ +++ + I+L T G VR +S + V GRN+ GVR I Sbjct: 805 GTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVSEVSVI-GRNTGGVRLI 863 Query: 728 SLAKGDQVISMAIVLHADADYDE 750 + + V+ + V +D D +E Sbjct: 864 RTGEDETVVGLQRVAESDEDENE 886 >gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8] gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8] Length = 862 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/899 (43%), Positives = 566/899 (62%), Gaps = 67/899 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ ++NK Y K ARI Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D C +++ NP+ ++ L+E++ PDFPT +I G G+K Y TGRG +V+RG +H E Sbjct: 191 LDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVVMRGRTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I++ E+PYQVNK ++EKIAELV EK+I I+DLRDESD+ G RVVIELKRG Sbjct: 251 MDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 DV+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EVV RRT + L Sbjct: 311 EIPDVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 KAR+R HVL GLA+A+AN+DE++ II+ +P P A+++LM +SW + +++++ Sbjct: 371 RKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRAAME 430 Query: 435 ----DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + G Y LS+VQ + IL++RL RLTGL +D I NE + I + LD Sbjct: 431 AARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADLLD 490 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +R+ II EL ++ + RR+ IVE D+ ED I +D+VVT+SH GY+K Sbjct: 491 ILATAARVTAIITDELTEIRRQFGDKRRSEIVENAQDLSLEDLIAPQDVVVTLSHTGYIK 550 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 PL YRAQ+RGG+G+ +++DF+ +F+ +TH +L FS+ G VY KV+ +P G Sbjct: 551 SQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVYWLKVYEVPQG 610 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S +RGK ++N+ L + E+I I+ +S N ++ AT G V++ L++F Sbjct: 611 SRTSRGKPIVNLFPLEENEKINAILSV---KSFDENHFIFMATSLGTVKKTALTEFANPR 667 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 RSG IA+ LD D ++ E ND++L + G+ V F +R GR + GVRG+ L Sbjct: 668 RSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQM-GRATRGVRGMKL 726 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 A+ QV+S+ I ND Sbjct: 727 AEDQQVLSLLIA----------------------------------SND----------- 741 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ++ +E G+GKRT DFR S R +G++A VS+ N G +VA V+D Sbjct: 742 -------QQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERN--GLVVAAKLVSD 792 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+I+L++ G LIR V+EIR RAT+GV + + + E++ +E+I E++ ++ E+ Sbjct: 793 EDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVETDDEEDGET 851 >gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T] gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T] Length = 883 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/899 (43%), Positives = 563/899 (62%), Gaps = 71/899 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H LL D+ K+TVDF PNYDGS +EP+VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE+VD C+ ++ PD D++AL++I++ PDFPT +I G G++ Y TGRG +++R Sbjct: 186 NLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVIMRAR 245 Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E DR+ I+V E+PYQVNK + E++AELV EK+I I+++RDESD+ G R+VI Sbjct: 246 THFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN+L+++T LQ F +NMVAL KP L +L F+ R EVV RR Sbjct: 306 ELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDR H+L GLA+A++N+DE++ +I+ +P P A+RELM R W ++ +++++ Sbjct: 366 TIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVEEMLS 425 Query: 433 --LID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 L D D Y + + G LSE Q +AILELRL RLTGL +D I E + Sbjct: 426 RALADSYRPEGLDPQYGLQAQG-YRLSEAQAQAILELRLQRLTGLEQDKIVGEYREVMDV 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL+ R+ II +EL +++++ PRR+ +V ++ ED I EDMVVT+S Sbjct: 485 ITDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIEDLITPEDMVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY KR PL+ YRAQRRGG+G+ M+DEDF+ LF+ +TH +VL FS+ G Y KV Sbjct: 545 HTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKL 662 + +P G+ +RGK ++N+ L +GE+IT ++P E DE +V AT G V++ L Sbjct: 605 YEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEH----FVFMATSEGTVKKTAL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + F ++G IA+ LD D ++ V + D++L + G+ VRF + +R GR++ Sbjct: 661 TAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPM-GRDAR 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG++L G VI+M + Sbjct: 720 GVRGMTLEDGQAVIAMLVA----------------------------------------- 738 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 K + Q +LT +E G+GKRT ++ R KG+ A S N G LV Sbjct: 739 -----------KDESQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V +D+++L+S G LIR V IR R+T+GV + + + + S+E++ ESE Sbjct: 786 GAVLVEPSDEVMLISTGGVLIRTSVESIREMGRSTQGVTLINLDEGTFLASIEKVAESE 844 >gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] Length = 921 Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/936 (43%), Positives = 561/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG +LS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + IL+S RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636 + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDADDTVLEGEL 665 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 PE + Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Q+ISM Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQQIISML---- 780 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I E Q ILT Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V++ ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVHEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 887 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/897 (45%), Positives = 561/897 (62%), Gaps = 71/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 STVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S + ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ L+N+L L+ GE ITT++P E Y+ AT +G V++ L Sbjct: 605 TYEIPEASRAARGRPLVNLLPLDDGEYITTMLPV---EEYTEGHYIFMATANGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + G IA++LD D ++S E +++L + G+ RF S +R GR + Sbjct: 662 ESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +G ++ISM Sbjct: 721 GVRGMRLPEGQKLISML------------------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 I EE Q ILT S +G+GKRT+ +F R G+G+ A + N G LV Sbjct: 738 --IPEEGSQ--------ILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GRLV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D ++I+L+SD+GTL+R V E+ R T+GV + A DE +V +ER++E Sbjct: 786 GAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLASDETLVGLERVQE 842 >gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2] gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2] Length = 864 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/905 (44%), Positives = 569/905 (62%), Gaps = 70/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 IFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L DL K+TVDF NYDGS EP V ARYPN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++ +A+ID+PD D + L+ + GPDFPT +I G GI+ AY TGRG +V+R +H Sbjct: 188 TEILNATIALIDDPDTDDETLLSHVPGPDFPTAGIINGAAGIREAYLTGRGRVVMRARTH 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ + I+VTE+PYQVNKA ++E+IAELVREK+I I +LRDESD+ G R+VIEL Sbjct: 248 FEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG DV+LN LY+ T +QS+F +NMVA+ G +P L IL F+ R EVV RRT Sbjct: 308 RRGELPDVMLNNLYQQTQMQSVFGINMVAIVGGQPRTLGLRDILTVFLRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+RAH+L GLA+A+AN+D ++ +I+ +P AR LM ++W++ + L++ Sbjct: 368 YDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHALLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D ++ + + D + LS+ Q +AILE+RL RLTGL +D I E SL +I Sbjct: 428 DAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSLLEKII 487 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + LDIL S SRL+ +I+ EL+++ +E RRT IV D+ ED I ED VVT+S Sbjct: 488 DLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEEDRVVTLSRE 547 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+K LS Y++QRRGG+G+S M+DED + L + STH L F++LG VY KV++ Sbjct: 548 GYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGRVYWRKVYQ 607 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP G+ ARG+ ++NIL L +GER+ ++P E ++ Y+ FAT G V++ L DF Sbjct: 608 LPQGARGARGRPVVNILPLQEGERVNALLPVRE---FVDDHYIFFATATGQVKKTPLVDF 664 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + ++G IA+ L D ++ +++L + G+ +RF + +R GR + GVR Sbjct: 665 SRPRQAGIIAIDLRDDDRLVGARLTDGSRELMLFSNAGKSIRFAEADVRSM-GRTAGGVR 723 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI + + +V+S+ L+ G+ + +T+ Sbjct: 724 GIRMDEMQRVVSL-------------------------LVVGEGQVLTA----------- 747 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +E G+GKRT DF + R G+G+ A S+ N GALV Sbjct: 748 ------------------TEHGYGKRTPIDDFPLQGRGGQGVIAIQTSERN--GALVGAA 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D D++IL+SD GTL+R +++I SR T+GV++ + DE++V + + + + Sbjct: 788 LVQDEDEVILISDAGTLVRTEISQISSVSRNTQGVILIRLSDDEKLVQLAAVSAMSVDSD 847 Query: 906 AESTE 910 A+ E Sbjct: 848 ADRDE 852 >gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400] gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400] Length = 909 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/922 (44%), Positives = 571/922 (61%), Gaps = 92/922 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK AH LL DL K+TVDF PNYDG+ P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 QKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I++P + ++ LME I GPDFPT A I GR GI +AY TGRG ++R + Sbjct: 188 TEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYNTGRGRAIMRSKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE+I+V EIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE+K Sbjct: 248 IETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAHVL LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 368 ELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + + I DG YL+E Q +AILELRL RLTGL D I E L + I Sbjct: 428 DDAARPEWLEPEFGI-RDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELLVLIAG 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL + SRL+ +IK+EL + ++ RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGGKG++ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ARG+ ++N+L L+ GE IT I+P E ++ Y++ AT HG V++ L+ + Sbjct: 607 PLASRTARGRPIVNLLPLSDGEHITAILPVRE---YADDKYIIMATAHGTVKKTALTAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708 +G IA+ L D+++ V+ +DI+L + G+ VRF Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAET 723 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 I A+R GR + GVRGI L G +V+S+ + Sbjct: 724 GEEIIALRPM-GRTATGVRGIKLDAGQKVVSLIVP------------------------- 757 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 K D ++ LTV+E G+GKRT ++ +R KG Sbjct: 758 ---------KGDGAI-------------------LTVTENGYGKRTELSEYPAKSRGTKG 789 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + + VS+ N G +V V D+I+L+S+KGTL+R P + I R T+GV I TA Sbjct: 790 VVSIKVSERN--GEVVGAVQVGTFDEIMLISNKGTLVRTPAEGVSIIGRNTQGVTIIRTA 847 Query: 887 KDERVVSVERIRE---SEIVDE 905 +DE+VV ++RI E E++DE Sbjct: 848 EDEKVVGLQRIEEIQTEELLDE 869 >gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 864 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/899 (45%), Positives = 565/899 (62%), Gaps = 75/899 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K + V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Sbjct: 3 EFAKEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K AH LL D+ K+TVDF NYDGS +EP V R PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ EVVD CVA+ID+P I + LME + GPDFPT AVI G TGI AY TGRG I + Sbjct: 183 PPHNMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAAVINGATGIHEAYHTGRGRIYL 242 Query: 251 RGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R SH+E G R+ +VVTE+PYQVNKA +LEKIAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG +VILN LY++T +Q++F +NMVAL +P L +L+AF+ R EVV Sbjct: 303 MVIELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQPRLLDLKQVLEAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S +P A+ LM R+W + + + Sbjct: 363 TRRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDE 422 Query: 430 LI-----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 ++ DL D+++ I +DG YLS+ Q +AIL+LRL RLTGL ++ + +E Sbjct: 423 MLARAGAATSRPEDL--DAAFGIHADG-YYLSDAQAQAILDLRLHRLTGLEQEKVVSEYK 479 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L +I + LDIL S RL+ +I+ ELL ++++ RRT I+E LD+ ED I ED+ Sbjct: 480 ELLEKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLTLEDLITEEDV 539 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY K P+S YRAQ+RGG+G+S +DEDFV L + STH ++L FSS G Sbjct: 540 VVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRGKA 599 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ LP GS ARGK ++N+L L +GERI I+P E +LYV +T G V+ Sbjct: 600 YWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVRE---YLEDLYVFMSTSSGTVK 656 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L DF + +G IA+ L D+++ V D++L T G+ +RF +R G Sbjct: 657 KTPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPM-G 715 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ LA+ +VIS+ IV DE + + + D D Sbjct: 716 RTACGVRGVRLAEDQRVISLIIV-------DEGTVLIATENGYGKRTPPD---------D 759 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 V G Q ++ + G R+G + AT V+ +E+ Sbjct: 760 FPVHGRGG-----------QGVIAIQTGG--------------RNGAVVGATLVADEDEV 794 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L++D GTL+R PV +I + R T+GV + E +V + R+ Sbjct: 795 ---------------MLITDGGTLVRTPVADISVLGRNTQGVRLIRLTDQEHLVELARV 838 >gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] Length = 848 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/906 (44%), Positives = 562/906 (62%), Gaps = 100/906 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD--------- 767 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 +LTV+E G+GKRTS + Sbjct: 768 -------------------------------------------VLTVTENGYGKRTSLSE 784 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 + R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 785 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 842 Query: 877 TKGVVI 882 T+GV + Sbjct: 843 TQGVTL 848 Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EIT+ +D +E EL +E ++T+S +G+ K D+ R GKG AT Sbjct: 519 EITAATHDIDME---------ELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSAT 569 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887 + + + I L+ N +D I+L S +G R+ V ++ +ASR +G V + + Sbjct: 570 KMKEEDYIERLLV---ANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEE 626 Query: 888 DERVVSVERIRE 899 +ER+ ++ + E Sbjct: 627 NERITAILPVTE 638 >gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] Length = 886 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/896 (45%), Positives = 567/896 (63%), Gaps = 72/896 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 AEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E T G RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE Sbjct: 248 VE-TDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILPLKDILSAFVRHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L LA+A+AN+D ++ +IR P P A+ L+ RSW + ++D Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLDR 426 Query: 434 IDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D + Y I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 427 AGDDAARPEWLEPEYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL + L+ +I++EL+++K++ + PRRT I D+ ED I +ED+VVT+SH Sbjct: 486 AELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+ Sbjct: 546 QGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRGRMYWMKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S ARG+ ++N+L L ERIT I+P E E +V AT G V++ L + Sbjct: 606 QLPEASRGARGRPIVNLLPLESNERITAILPVREYEEGR---HVFMATASGTVKKTSLIE 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ DE++ V+ N+++L + G+ VRFP + +R GR + GV Sbjct: 663 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSM-GRTATGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+LA+GD+V+S+ IV + + +H +R T + + +G Sbjct: 722 RGINLAEGDRVVSL-IVPRGEGPI---LTVTQHGYGKR------TAQAEYPTKSRATQGV 771 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 IS ++S R+G+ + A V Sbjct: 772 IS------------------------------IKVSERNGEVVGAVQV------------ 789 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D DQI++++D GTL+R V+E+ I R T+GV + TA+DE VV ++ + E Sbjct: 790 ---DDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVAEQ 842 >gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 928 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L++GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + G IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 GFGKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V E+ R T+GV + A DE++V +ER++E V+ E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889 >gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301] gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301] Length = 882 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/900 (44%), Positives = 565/900 (62%), Gaps = 72/900 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K ARI Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATNIP HN+ EV Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D C A++ +P++ ++ L+E++ PDFPT +I G G+K Y TGRG +V+RG +H+E Sbjct: 191 LDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVVMRGRTHVED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ ++V E+PYQVNK +EKIAELV EK+I I+DLRDESD+ G RVVIELKRG Sbjct: 251 LERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+V+LN LY+ T LQ F +NMVAL +P L +L+AF+ R EV+ RRT + L Sbjct: 311 EIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVITRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 KAR R H+L GLA+A+AN+DE++ II+ +P P A+ LM ++WN+ +++++ Sbjct: 371 KKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRAAME 430 Query: 435 ----DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + S G Y LS++Q + IL++RL RLTGL +D + +E + I + LD Sbjct: 431 ASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIADLLD 490 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +R+ II EL ++ + RR+ IV D+ ED I +D+VVT+SH GYVK Sbjct: 491 ILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVVTLSHTGYVK 550 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY KV+ +P G Sbjct: 551 SQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYWLKVYEVPQG 610 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S RGK ++N+ L +GE+I I+ E DE N ++ AT G V++ LSDF Sbjct: 611 SRTGRGKPIVNLFPLEEGEKINAILSVKEFDE----NHFIFMATSLGTVKKTPLSDFANP 666 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG IA+ LD D ++ E ND++L + G+ V F +R GR + GVRG+ Sbjct: 667 RKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSM-GRATRGVRGMK 725 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA QV+S+ I AD D Sbjct: 726 LADNQQVLSLLI---ADND----------------------------------------- 741 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +Q +L +E G+GKRT DFR S R +G++A +S+ N G +VA VN Sbjct: 742 --------QQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERN--GLVVAAKLVN 791 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++D+I+L++ G LIR V EIR RAT+GV + + + E++ +E+I ES D+ ES Sbjct: 792 EDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVES---DDPES 848 >gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 928 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L++GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + G IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 GFGKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V E+ R T+GV + A DE++V +ER++E V+ E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889 >gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/898 (45%), Positives = 568/898 (63%), Gaps = 74/898 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+ + + I +VSI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R L++GQGNFGSV Sbjct: 60 RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + L+ DL K+TVDF P YD S EP+V AR PN+LVNG Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG I GR GI+ A Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++IR HIEK RE IV+TEIPYQ NK+ +LEKIA L++EKRI IA+ R Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELK+ A+V++NQLY+ T LQ F + M+++ +PE L IL+ Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR L+ R Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS +Q +AILE+RL RLTGL R+ I E ++L Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +L S ++ II++E ++++ RRT I++ ++ ED I RE+MVV Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KR P+ YR+QRRGGKG G DEDFV+ + + STH ++LFFS+ G V+ Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRR 659 KV+ +P ARGKA++N+L L E++ I+P E + Y++ ATK G V++ Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F + + GKIA+ + DEIL T +N++LL ++ G VRF IR GR Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAM-GR 692 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+LA GD+ DE I +++SGD Sbjct: 693 GASGVRGITLAAGDE--------QKGIPADELIGL--------QVLSGDP---------- 726 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E IL VSE GFGKR+ ++R+ R GKG+ A S+ N G Sbjct: 727 -----------------EASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERN--G 767 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +V + V D+DQ+++++++G +IR+P+ IR+ R+T+GV +F+ +E+VV+++R+ Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRL 825 Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +++ +E+ ++TV+ G+ KR +R R GKGI+ + + + + + + Sbjct: 503 EDMIAREEMVVTVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQV---ASTH 559 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 D ++ S+KG + V EI A R +G V + +E+V ++ + E+ + Sbjct: 560 DTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616 >gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13] gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40] gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 928 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/941 (43%), Positives = 573/941 (60%), Gaps = 104/941 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILA 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L++GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + G IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 GFGKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GFGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V E+ R T+GV + A DE++V +ER++E V+ E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEE 889 >gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] Length = 863 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/906 (45%), Positives = 572/906 (63%), Gaps = 68/906 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYD + PVVL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A++D PD L+ LMEII GPDFPT A+I GR GI Y TG+G +VIR Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE S R+ I++ E+PYQVNKA ++E+IAELVR+K++ I+ LRDESD+QG RVVI Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR ADV+LN L+ +T +Q++F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+ L+ + W +K +++ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD + G Y LSE Q +AILELRL RLT L +D I NE L I Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 KE LDIL+S RL+ +I+ EL+ +K + RRT I D+ ED I ED+VVT+SH Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK P++ Y+AQRRGGKG+S ++DEDFV L I STH ++L FS+ G +Y K + Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +LP S +RG+ +INIL L +GE I ++P E + + YV ATK G V++ L+ Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + +G IA+ L+ D ++ V+ DI+L T G+ +RF + +R GR + GV Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + K DQ + +V+ + G T +T+ +N + Sbjct: 722 RGIRVEK-DQAVKSLVVVDPN---------------------GGT-ILTATENGYGKRTH 758 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I E R VS +G G+G+ + V++ N G +V Sbjct: 759 IDEYR-------------VSGRG----------------GQGVISIQVTERN--GKVVRS 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903 V DND+ +L++DKGTL+R VNE+ + R T+GV + + + E VV +++I + E + Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIVDLGEEL 847 Query: 904 DEAEST 909 +EAE + Sbjct: 848 EEAEDS 853 >gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010] gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010] Length = 859 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/895 (44%), Positives = 557/895 (62%), Gaps = 68/895 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+ I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G WN Y K A Sbjct: 8 LDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K H +L DL K+TVDF NYD S EP VL + P +LVNG GIAVGMATNIP HNL Sbjct: 128 AKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ +A+IDNP+I + LME I GPDFPT A+I G GI AYATGRG + IR + Sbjct: 188 TEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGARGIAEAYATGRGRVHIRARAD 247 Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +Q IVV E+PYQVNKA +LEKIAELV+EK+I I LRDESD+ G R+VI L Sbjct: 248 IETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIVL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG +V+LN LY+ T +Q++F +NMVA+ +P L +L AF+ R EVV RR+ Sbjct: 308 RRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKDVLAAFIRHRREVVTRRSI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI--- 431 + L KARDRAH+L GLA A+AN+DEV+ +I+ SPNP A+ L+ R W + I +++ Sbjct: 368 FDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGEA 427 Query: 432 ----DLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +D G D +LS Q +AIL++RL RLTGL +D I E + I E Sbjct: 428 GAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLIGE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L ILS L+ +I+ EL+++ E RRT I+ LD+ ED I E+MVVT+SH G Sbjct: 488 LLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLSHAG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K L Y+AQ+RGGKG++ M+DEDF+ LFI +TH ++L FSS G VY +KV+ L Sbjct: 548 YAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKVYEL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P G ARGK ++N+L L +GERI ++ E E+ + ++ AT G V++ L D+ Sbjct: 608 PQGGRTARGKPIVNLLPLEEGERINAVLSIREFEA---DKFIFMATASGTVKKTPLVDYS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L D+++ V +DI+L + G+ +RFP + +R GR S GVRG Sbjct: 665 RPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSM-GRVSRGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + +A +++IS+ I Sbjct: 724 MRIADNEKIISLII---------------------------------------------- 737 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 QE E ILT +E G+GKRT+ ++R+ R G+GI + S N G++V Sbjct: 738 ---AQE----EGAILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRN--GSVVGAVQ 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D DQI+L+++ GTL+R PV ++ + R T+GV + + +K+E++V VER+ E E Sbjct: 789 VCDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEKLVGVERVLEDE 843 >gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/898 (45%), Positives = 568/898 (63%), Gaps = 74/898 (8%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+ + + I +VSI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R L++GQGNFGSV Sbjct: 60 RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGDPPAA RYTE R+ + L+ DL K+TVDF P YD S EP+V AR PN+LVNG Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG I GR GI+ A Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS++IR HIEK RE IV+TEIPYQ NK+ +LEKIA L++EKRI IA+ R Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELK+ A+V++NQLY+ T LQ F + M+++ +PE L IL+ Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR L+ R Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS +Q +AILE+RL RLTGL R+ I E ++L Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +L S ++ II++E ++++ RRT I++ ++ ED I RE+MVV Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TV+H GY+KR P+ YR+QRRGGKG G DEDFV+ + + STH ++LFFS+ G V+ Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRR 659 KV+ +P ARGKA++N+L L E++ I+P E + Y++ ATK G V++ Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F + + GKIA+ + DEIL T +N++LL ++ G VRF IR GR Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAM-GR 692 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI+LA GD+ DE I +++SGD Sbjct: 693 GASGVRGITLAAGDE--------QKGIPADELIGL--------QVLSGDP---------- 726 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E IL VSE GFGKR+ ++R+ R GKG+ A S+ N G Sbjct: 727 -----------------EASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERN--G 767 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +V + V D+DQ+++++++G +IR+P+ IR+ R+T+GV +F+ +E+VV+++R+ Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRL 825 Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 6/117 (5%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +++ +E+ ++TV+ G+ KR +R R GKGI+ + + + + + + Sbjct: 503 EDMIAREEMVVTVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQV---ASTH 559 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904 D ++ S+KG + V EI A R +G V + +E+V ++ + E+ + Sbjct: 560 DTLLFFSNKGRVFWRKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616 >gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] Length = 845 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/891 (44%), Positives = 563/891 (63%), Gaps = 90/891 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ I V I EM+NS++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM +G +K + Sbjct: 8 KDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPDKAH 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA GEV+GKYHPHG+AA+YD++ RMAQD+SLR L++G GNFGSVDGDPPAA RYT Sbjct: 68 RKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + ++ D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 128 EARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMATNIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 NL EV+DG V VI+ P +D L +II+GPDFPT +I+G++GI++AY TGRG I++R Sbjct: 188 PQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRIIMR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V++IE+ S ++++IVVTE+PYQVNKA ++EKIA+LV+EKRI +I+DLRDESDR G R+V Sbjct: 248 AVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGMRIV 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFRE 366 IELKR A+A+++LNQL+++T +Q FSVNM+AL ++P L + +V ++ Sbjct: 308 IELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVDHQK 367 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ L+KA RAH+L GL IA+ NLDEV+RIIR S N A+ LM+R Sbjct: 368 DVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMER------ 421 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 SE Q +AI+++RL RLT L R+ + E L +IK Sbjct: 422 --------------------FSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKY 461 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 D+L++ +L IIK+EL +K + RRT+I+ D + ED I +D V+T++H G Sbjct: 462 YKDVLANEFMVLDIIKEELGEIKGKFGDERRTKIIPDETDFDVEDLIEEQDSVITLTHFG 521 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR+P Y++QRRGGKG G+ R+EDFV +LF STH ++FF++ G VY+ K + + Sbjct: 522 YVKRLPTDTYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEI 581 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P QA+G A++N+L L+Q E++TT++P E + +Y++ ATK+G V++ L ++ Sbjct: 582 PEAGRQAKGTAIVNLLQLDQEEKVTTVIPIKEYKEG---MYLILATKNGVVKKTDLMEYD 638 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I + G A+ L DE++ V DILL TK G +RF +R GR S GVRG Sbjct: 639 HIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPL-GRVSQGVRG 697 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D VI M + + E TSL Sbjct: 698 IKLDDDDVVIGMGVFI----------------------------EDTSL----------- 718 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 L V+E+GFGKRT ++++ R GKGI V++ + G + + Sbjct: 719 --------------LVVTERGFGKRTELEEYKVQTRGGKGILTYRVTE--KTGKIAGMKL 762 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VN+ D ++L+S GT+IR+ VN+I + RAT+GV + + +V + RI Sbjct: 763 VNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVYLVGIARI 813 >gi|167036442|ref|YP_001664020.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 807 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGSVDGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + E Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H +++ Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 >gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 928 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-RDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILT 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L++GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + G IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624] Length = 890 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/905 (44%), Positives = 568/905 (62%), Gaps = 67/905 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDG KPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGDP AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH L D+ K+TVDF PNYDGS +EP+VL R PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ V+ NP +D LMEII PDFPT +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHVLKNPGASIDELMEIIPAPDFPTAGIIYGMQGVKDGYRTGRGRVVMRARCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK ++LE+IAELV EK+I I+ ++DESD+ G RVVIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL G +P+ L ++ F+ R EVV RRT + L Sbjct: 311 ELPEVVLNNLYKQTQLQDTFGMNMVALVGGQPKLCNLKDLIVVFLDHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431 KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVREMLTRSRAD 430 Query: 432 -DLIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +I+ Y + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI+ LDIL+ R+ I+ +EL +K E RR+ + D+ ED I ED Sbjct: 491 AEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVEHNAQDLATEDLIAPED 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 VVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 KVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L +GE+IT ++P + SS+ ++ YV AT+ G Sbjct: 611 LYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSSFPSDHYVFMATRMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F ++G IA+ LD+ D ++ +D++L + G+ VRF + +R Sbjct: 671 VKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRG+ L G VI+M L++ D + Sbjct: 731 -GRNARGVRGMMLDDGQSVIAM-------------------------LVAQD-----ETQ 759 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ND + E + +LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 760 NDVNGEAARTS------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQQSERN 807 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + ++ ++R Sbjct: 808 --GKVVAATLVHTDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIALDDGTQLSGLQR 865 Query: 897 IRESE 901 I E++ Sbjct: 866 IVEND 870 >gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2] gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2] Length = 871 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/900 (43%), Positives = 565/900 (62%), Gaps = 70/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +S+ DEMQ SYL+YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G WNK Y K A Sbjct: 8 ILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TV+F PNYDGS EP VL R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E V C+A+IDNP++ + LME + GPDFPT +I G GI+ AY TGRG + +R + Sbjct: 188 NETVSACIALIDNPELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQMRARTS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E + I+V EIPYQVNKA ++E+IAELV+EK+I I+ LRDESD+ G R+VIE+K Sbjct: 248 VETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIEVK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V++N LY+ T++Q++F +NMVAL +P+ L +L+AF+ R EVV RRT Y Sbjct: 308 RGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVLEAFIRHRREVVTRRTIY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR++AH+L GLA+A+ N+DE++ +I+ SP+P A+ +++R W+ +++ L++ ++ Sbjct: 368 DLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEKVE 427 Query: 436 -------DSSYTIGSDGT--MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D G+DG+ LS Q +AILE+RL RLTGL +D I E L ++I E Sbjct: 428 MKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L+IL + RL ++++EL V + RRT I D++ ED I E+ +VT+S G Sbjct: 488 FLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVTLSRDG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+K PLS Y+AQRRGG+G+S M+++D + + + STH +L FS+ G +Y +K W+L Sbjct: 548 YIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQKTWQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++GK ++N+L L GE IT+I+P E + YV ATK V+R LSDF Sbjct: 608 PLASRGSKGKPIVNVLPLETGEHITSILPVSEFSEGY---YVFMATKQSTVKRVALSDFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L DE++ E DI+L + +G+ +RF + +RV GR + GVRG Sbjct: 665 RPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVM-GRQARGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G M+I+ Sbjct: 724 MKLKDG-----MSII--------------------------------------------- 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ K+ ILT +E G+GK T D+ NR G+G+ + S N G +V Sbjct: 734 ---SMQVARKDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRN--GNVVYSVA 788 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVD 904 V + +++L+++KGTL+R V+EI + R T+GV + + K E VV +V ++E E+ D Sbjct: 789 VTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDELPD 848 >gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] Length = 905 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/901 (44%), Positives = 563/901 (62%), Gaps = 75/901 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ EM+ S+L YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN+ Y+K Sbjct: 15 KETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVWNRPYLK 74 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+VMGKYHPHG++AIYD + RMAQD+SLR L++GQGNFGSVDGDPPAA RYTE Sbjct: 75 SARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAAMRYTEI 134 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+K A ++ D+ KDTVDF PNYDGS EP VL A+ PN+L+NG GIAV MATNIP H Sbjct: 135 RLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMATNIPPH 194 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV C+ +++NPD +D L+E I PDFPTGA+I G G++ Y TGRG +V+R Sbjct: 195 NLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGALIYGVAGVREGYRTGRGRVVMRAK 254 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +H E +G+R+ I+V EIPYQVNKA + +KIAELV EK+I I+D+RDESD+QG RVV Sbjct: 255 THFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDKQGMRVV 314 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG +A+V+LN L++ T LQ F +NMVAL +P L +L+AF+A R EVV R Sbjct: 315 IELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQPRLLNLKQVLEAFLAHRREVVTR 374 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y LNKARDR H+L GLA+AV N+DE++ +I+ SP P A+ L+ R+W A +++ Sbjct: 375 RTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLLARTWAAGIAAEMV 434 Query: 432 DLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + D + + DGT LSEVQ IL++RL RLTGL ++ I E + Sbjct: 435 ERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIVTEYREV 494 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVRE 536 I + LDIL+ +R+ II+ EL V +E PRR++I +++ ED I + Sbjct: 495 VDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDLITPQ 554 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMVVT+S+ GY+K PLS YR+QRRGG+G+ +D+D+V LFI +TH ++L FS G Sbjct: 555 DMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTILCFSDRG 614 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY KVW +P GS +RG+ ++N+ L + E+IT ++P ++ + YV AT G Sbjct: 615 RVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPI---KTFDDEHYVFMATSLGT 671 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ LSDF ++G IA+ LD D ++ E+D++L + G+ VRF +R Sbjct: 672 VKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSEGDVRAM 731 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRG++L +G +VI+M L AD DER Sbjct: 732 -GRTARGVRGMALEEGQKVIAM---LVAD---DER------------------------- 759 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +LT +E G+GKRT + R KG+ A S+ N Sbjct: 760 ---------------------RSVLTATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERN 798 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V + D+I+L++ G L+R V+EIR RAT+GV + + + + V+R Sbjct: 799 --GRMVAAILVEEGDEIMLITTGGVLVRTRVDEIREMGRATQGVTLIGVEEGDTLSRVQR 856 Query: 897 I 897 + Sbjct: 857 V 857 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 762 RRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 R ++G EE + D S +E N SE ++L + ++T+S G+ K ++R Sbjct: 516 RDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDLITPQDMVVTLSNSGYIKAQPLSEYR 575 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 R G+G +A + + L F N +D I+ SD+G + + V E+ SRA++ Sbjct: 576 SQRRGGRGKQAASTKDDDWVDQL---FIANTHDTILCFSDRGRVYWLKVWEVPQGSRASR 632 Query: 879 G---VVIFSTAKDERVVSVERIR 898 G V +F A++E++ V I+ Sbjct: 633 GRPIVNMFPLAENEKITVVLPIK 655 >gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 925 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250] gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 928 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076] gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race 4] gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 928 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a] gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a] gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 925 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 928 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 571/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L++G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLSEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 807 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + E Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H +++ Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 >gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 928 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILT 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------PEDESSW 643 + +P S ARG+ L+N+L L+ GE ITT++P +D + Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEAELDDAENS 664 Query: 644 NNL-----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 N ++ +T +G V++ L F + G IA++LD D ++S Sbjct: 665 NETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] Length = 807 Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/891 (44%), Positives = 563/891 (63%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELVR+K I I+DLRDESDR G ++ Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + E Y+V TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIK---YIVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H +++ Sbjct: 692 EDDEVVEMDLV-HPNSE------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E GFGKRT ++R+ R+GKGI A +S+ + G LV++ VN Sbjct: 708 ---------ILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 >gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB] gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB] Length = 890 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/909 (44%), Positives = 571/909 (62%), Gaps = 86/909 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I+N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR Sbjct: 188 REVINGCLAYIENEDISIEELMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I++ E+PYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP A+ L+ ++W+ ++ +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLDPQYGI-RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L ILS RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722 Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 GI LA+GD+V+S+ AI+ Y +R ++ + R Sbjct: 723 GIRLAEGDRVVSLIVPREEGAIMTVTQNGYGKRTANSEYPTKSR---------------- 766 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + +G IS +++ R+G I A V Sbjct: 767 -ATQGVIS------------------------------IKVTERNGPVIGAVQVV----- 790 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D DQI++++D GTL+R V+E+ + R T+GV++ TA+DE VV ++R+ Sbjct: 791 ----------DGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRV- 839 Query: 899 ESEIVDEAE 907 +E V+E E Sbjct: 840 -AEPVEEEE 847 >gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 872 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/905 (44%), Positives = 562/905 (62%), Gaps = 72/905 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KETLPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H LL D+ K+TVDF PNYDGS +EP+V+ AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGE++D C+A+++N ++ +D L++++ GPDFPT +I G G++ Y TGRG +V+RG Sbjct: 186 NLGEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVVMRGR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +H E +R+ I++ E+PYQVNK +LEKI ELV EKRI I+DLRDESD+ G RVV Sbjct: 246 THFEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG A+V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV+ R Sbjct: 306 IELKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRREVLTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+RAH+ GLA+A+ N+DE++ +I+ SP P ARR LM R W + + +++ Sbjct: 366 RTVFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEML 425 Query: 432 D--LIDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +D + Y + + G + LSE Q +AILELRL RLTGL RD I + L Sbjct: 426 QRAALDATRPQGLGLEYGLSASGYL-LSEAQAQAILELRLQRLTGLERDKIVADYGELLA 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + +DIL+ R+ +I +EL +++ + RR+ IV D+ ED I DMVVT+ Sbjct: 485 RIADLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMVVTL 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+K PL+ YRAQRRGG+G+ M+ +DFV LF+ +TH +L F++ G VY K Sbjct: 545 SHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+ +P G+ +RGK ++N+ +GE+I+ I+P E ++ Y+ T G V++ L Sbjct: 605 VYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKE---FTDDRYIFMCTAQGTVKKTPL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF ++G IA+ LD D ++ E D++L + G+ V F +R GR + Sbjct: 662 SDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPM-GRTAR 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ LA QV+S+ L AD D Sbjct: 721 GVRGMRLADQQQVLSL---LVADND----------------------------------- 742 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +Q +L +E GFGKRT DFR S R +G+ A S+ N G +V Sbjct: 743 --------------QQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERN--GRVV 786 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V D D+I+L++ G LIR V EIR RAT+GV + + E++ +E+I E+E Sbjct: 787 AARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGEKLAGLEKIVETE- 845 Query: 903 VDEAE 907 D+AE Sbjct: 846 -DDAE 849 >gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8] gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8] Length = 856 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/898 (45%), Positives = 567/898 (63%), Gaps = 77/898 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGIINGRAGIVEAYRTGRGRIYIRAR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE K +G RE I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G RVV Sbjct: 246 HEIEQDKKTG-RESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG + DVI+N L+ T L+++F +NMVAL +P+ L +L AFV R EVV R Sbjct: 305 IELRRGENPDVIINNLFAQTQLETVFGINMVALINGEPKTLNLKEMLDAFVRHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+ A+ +LM + W D+ ++ Sbjct: 365 RTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLAML 424 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + DD G +G +LS Q +AIL+LRL RLTGL + ++NE + + Sbjct: 425 ERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILEK 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL RL+ +I+ EL + + RRT I D+ D I ED+VVT+S Sbjct: 485 IADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVVTIS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K + Y+AQRRGG+G++ M+DEDF+ L + ++H ++L FS+ G VY +V Sbjct: 545 HSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYWLRV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660 + +P GS +RG+ ++NIL L++GERITT +P +PED+ +V+ AT G V++ Sbjct: 605 FEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + SG IA+ LD D ++ +++L + G+ VRF +R + R Sbjct: 659 PLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS-RT 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRGI + +G V+S+ I Sbjct: 718 ARGVRGIKMPEGHHVVSLII---------------------------------------P 738 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 EG + ILT SE G+GKRT+ +F +R +G+ A S+ N G Sbjct: 739 QEGGV--------------ILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN--GN 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 LV + D DQ++L+SDKGTL+R +E+ + SR T+GV + A+ DER+V VERI Sbjct: 783 LVTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIRLAQEDERLVGVERI 840 >gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] Length = 856 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 571/894 (63%), Gaps = 58/894 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR+ Sbjct: 9 AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGSVDGD PAA RYTE R+ + Sbjct: 69 VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMYQ 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AH LL D+ K+TV+ PNYD S +EP+VL A++PN+LVNG GIAVGMATNIP HNL E Sbjct: 129 LAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLAE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG VAVI NP++ + L+ +I GPDFPT I GR GI +AY+TGRG I +R + +E Sbjct: 189 VIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAIVE 248 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +R+ IVVTEIPYQVNKA ++EKIAELVREK+I I+DLRDESDR+G RVV+ELK+ Sbjct: 249 THKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVELKK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + ++LN LY+ T +QS F + M+A+ +P+ TL + F+ R E+V RRT + Sbjct: 309 DENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRTIFD 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ LD V+ +IR S NP A+ LM ++ + + L Sbjct: 369 LKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGLSLP 428 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 +++ + M LSE+Q +AILE+RL RLTG+ RD I +E + + I +IL+S + Sbjct: 429 ANHAEYAKPVM-LSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASETE 487 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L II ELL +K++ RRT I++ ++ ED IV EDMVVT+SH GY+KR +++Y Sbjct: 488 ILKIIVGELLELKEKFGDKRRTEIIDQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTMY 547 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ ++EDFV LFI S+ ++FF+ G VY KV+ +P RGK Sbjct: 548 RAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGK 607 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L+L+ E+IT I+P E + + +++ AT+HG V++ L ++ G IA+ Sbjct: 608 AIVNLLNLSANEKITAILPVKEFAA---DKFIMMATRHGVVKKTPLMEYSHPRLGGIIAV 664 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D+++SV D+LL ++ G+ +RF S +R GR S GVRG++L D VI Sbjct: 665 NLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRT-VGRVSRGVRGMTLEDDDVVI 723 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M I+ EE T DS+ Sbjct: 724 GMEII---------------------------NEEYT----DST---------------- 736 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + TV+E GFGKRT ++R +R GKGI ++ N G +V + V D + ++L+ Sbjct: 737 ---LFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERN--GCVVDIKQVVDENDLMLI 791 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +D+G ++RVPV I R T+GV + T DERVV+V R+ E E D EST+ Sbjct: 792 TDQGKILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTD 845 >gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] Length = 808 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/895 (44%), Positives = 564/895 (63%), Gaps = 88/895 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + G ++NK Y Sbjct: 2 ESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPYK 61 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDA+ RMAQD+SLR L++GQGNFGS+DGD PAA RYTE Sbjct: 62 KSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTE 121 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ + A LL DL K+TVDF PNYDGS QEP+VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 VRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIPP 181 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV + +A I NP I L LM I+ GPDFPT I G GI AY TG+G I +R Sbjct: 182 HNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGSDGIAEAYRTGKGLIRLRA 241 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E+ G RE I++ E+PYQVNK ++E+I ELV++K+I I D+RDESDR+G RVVI Sbjct: 242 RTFLEQRGG-REYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRVVI 300 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L++ A ILNQL+ +T++Q + +N+VA+ +PE +L +L F+ R EV+VRR Sbjct: 301 QLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNNRPELLSLKDLLTEFLKHRREVIVRR 360 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KA +RAH+L GL IA+ +LD+++ +IR + +P TAR +L++R Sbjct: 361 TLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVER------------ 408 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+EVQ +AILE+RL RLTGL R I +E L +I +IL+ Sbjct: 409 --------------FTLTEVQAQAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILA 454 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + + + +I+ +L+ ++D PRRT I+ ++ ED I EDMVVTVSH GY+KR P Sbjct: 455 NEALVYQLIEADLIDLRDRYGDPRRTEIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNP 514 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L++YR+QRRGGKGR+G+ ++++DFV+ L+I STH L FS+LG +Y KV +P+GSP Sbjct: 515 LNLYRSQRRGGKGRTGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPS 574 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGKA++N+L+ E++TTI+P E Y+V ATK G +++ +L +F + G Sbjct: 575 ARGKAIVNLLNFGSQEKLTTILPIREFVPEH---YLVMATKRGIIKKTELMNFSRPRSGG 631 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA LD DE++SV ++ L T LG+ +RF +R GR++ GVRG+++A+ Sbjct: 632 LIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDM-GRSARGVRGMTVAED 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ M I+ S EG Sbjct: 691 DCIVGMEIL--------------------------------------SAEGA-------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ILTV+ G+GKRT ++R+ R G G+ A ++ N G +V + V ++D+ Sbjct: 705 -------ILTVTANGYGKRTRHEEYRLQKRGGSGLLALRITDRN--GPVVGIIQVTEDDE 755 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+L++D+G +IR+PV I + R T+GV + T +ERVVS+ R+ E DE E Sbjct: 756 IMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIARLAEKG--DEGE 808 >gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9] gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9] Length = 859 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/918 (44%), Positives = 569/918 (61%), Gaps = 73/918 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+H+ + K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Sbjct: 1 MTDHLFA------KETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 54 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ +WN+ Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGS+ Sbjct: 55 HELSNDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSI 114 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH LL D+ K+TVDF PNYDGS EP+VL A+ PN+L+NG Sbjct: 115 DGDNAAAMRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSS 174 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL EVVD +A++ N D+ +D L++II PDFPT +I G G++ Sbjct: 175 GIAVGMATNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIYGLAGVREG 234 Query: 241 YATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 Y +GRG +VIR +H+E GDR+ +++ E+PYQVNKA +L KI ELVREK I I+DL Sbjct: 235 YRSGRGRVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDL 294 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESD+ G RVVIELKRG DV+LN LY+ T LQ F +NMVAL +P L IL+ Sbjct: 295 RDESDKSGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQPRLLNLKQILE 354 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R EVV RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P A+ ELM Sbjct: 355 EFLRHRREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMA 414 Query: 420 RSWNASDIKDLIDLI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRD 471 R W + +++++ + D G Y LSE Q +AILELRL RLTGL +D Sbjct: 415 RQWRSPLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQD 474 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + I + LDIL+ R+ II EL +K + RR+ I D+ ED Sbjct: 475 KIVAEYRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGDTRRSEIEPFGGDINLED 534 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +DMVVT+SH GY+K P++ Y+AQRRGG+G+ +DEDF+ +LF+ +TH +L Sbjct: 535 LITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDFLLC 594 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 FSS G +Y KV+ LP GS Q+RGK ++N+L L +GE+I I+P + + YV A Sbjct: 595 FSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPV---KGFSDTEYVFMA 651 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ LS F +G IA+ LD D ++ + ++++L + G+ VRF + Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GVRG+ L QVI M L+S Sbjct: 712 DVRPM-GRNARGVRGMELGDAQQVIGM-------------------------LVS----- 740 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 +EE Q +LT + G+GKRT D+R S R +G+ A D Sbjct: 741 --------------NEETSQ--------VLTATANGYGKRTPIGDYRKSRRGTQGVIAID 778 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + N GALVAV V D+D+++L++ G LIR V+E+R RA +GV + + E++ Sbjct: 779 TGERN--GALVAVALVADSDELMLMTTGGVLIRTRVSEVRETGRAAQGVRLINLDAGEQL 836 Query: 892 VSVERIRESEIVDEAEST 909 VS+E+I ES+ D+ + T Sbjct: 837 VSLEKIAESDEPDDTDET 854 >gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957] gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CFBP2957] Length = 885 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/905 (43%), Positives = 571/905 (63%), Gaps = 67/905 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLREVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW++ ++D++ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVRDMLS 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I +D Sbjct: 486 REVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT G Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSKGT 661 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 662 VKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM 721 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRG++L G QVI+M + A A+ T+ + Sbjct: 722 -GRQARGVRGMNLEDGQQVIAMLV---APAE-------------------------TAGE 752 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +V G+ +LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 753 GEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ ++R Sbjct: 798 --GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQR 855 Query: 897 IRESE 901 + ES+ Sbjct: 856 VVESD 860 >gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 928 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 570/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + S Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLNPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901] gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 812 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 561/886 (63%), Gaps = 85/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ +K + K A Sbjct: 7 VLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+GK+HPHG+ A+YDA+ RMAQD+S R LI+G GNFGSVDGD AA RYTE R+ Sbjct: 67 HIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF PNYD S +EPVVL +R PN+LVNG GIAVGMATNIP HNL Sbjct: 127 AKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG V +ID+P++++ LM+II+GPDFPTG I+GR GI+ AY TGRG+I +R V+ Sbjct: 187 REVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVTT 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 EK SG + I+VTE+PYQVNKA ++EKIAELVR+K+I IADLRDESDR+G R+VIELK Sbjct: 247 FEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LNQL+++T LQ F + M+AL +P L IL ++ +++VV RRT+Y Sbjct: 307 RDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRTRY 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR LM R Sbjct: 367 DLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFG------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E Q +AIL++RL RLT L R+ I E L +I+ IL+ Sbjct: 414 -------------LTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADER 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LLG+I+QELL +K++ RRT+I ++ED I EDMV+T++H GY+KR+P+ Sbjct: 461 VLLGVIRQELLEIKEKYGDARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDT 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ QRRGG+G + + ++EDFV LF+ STH +LFF++ G VY+ KV +P QA+G Sbjct: 521 YKNQRRGGRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKG 580 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N+L ++Q ERIT I+P E ++ Y+ TK+G V++ LS++ R G IA Sbjct: 581 TPIVNLLYVDQDERITAIIPVKE---FTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIA 637 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D+++ V+ T + ++++ TK G +RF + +R GR + GV+GI+L+ GD+V Sbjct: 638 LSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPM-GRTARGVKGITLSPGDEV 696 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I + +V D E Sbjct: 697 IGLEVV------------------------------------DEQAE------------- 707 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +LTV+ KGFGK+T ++R+ R GKGI V++ N G +V + V D+++ Sbjct: 708 ----LLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKN--GEVVGIVAVRPEDEVMA 761 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +S +G +IRV EI RAT+GV + KD+++ +V +I E Sbjct: 762 ISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQE 807 >gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 845 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/904 (44%), Positives = 571/904 (63%), Gaps = 68/904 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K VS+ EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +M +WNK Sbjct: 3 EFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R LI+GQGNFGSVDGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH +L DL K+TVDF PNYD EP+V+ AR PN+L+NG GIAVGMATNI Sbjct: 123 TEVRMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ C+A++D+P+ + L ++ PDFPT I GR G AY TGRG +V+ Sbjct: 183 PPHNLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVM 242 Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R E +R+ I+VTE+PYQVNKA ++E+IAE+V+EKR+ I+DLRDESD+ G R Sbjct: 243 RARCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + IELKR A+ADV+LN LY++T +QS+F++NMVAL P L +L+AF+ R EVV Sbjct: 303 IAIELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KARDRAH+L GLA+A+ NLD ++ +IR + +P A+ +++ +SW + Sbjct: 363 TRRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAA 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ + S + +DG +LSE+Q +AIL+LRL RLTGL +D IR+E +L I+E L+ Sbjct: 423 LLVERGEPSEGMHADG-YHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLE 481 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S++RL+ +I++EL++++D+ RR+ IV D+ ED I E+MVVT +H GY+K Sbjct: 482 ILGSKTRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 P++V+ AQRRGGKG+ ++EDFV +F STH LFFS+LG V+ +KV++LP Sbjct: 542 AQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQA 601 Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 A+GK ++N+LSL ERIT ++P F E + +V T G V++ + ++ Sbjct: 602 GRGAKGKPIVNMLSLAPTERITAVLPVRDFTEGQ------FVCMVTSLGVVKKTPVMEYS 655 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+ LD D +++V + + +L T+ G VRFP + +R GRN+ GVRG Sbjct: 656 RPRSQGINAINLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAM-GRNARGVRG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL + D+VIS V DSS Sbjct: 715 ISLEENDRVISAQWV------------------------------------DSS------ 732 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 Q ILT + G+GK T ++R +NR GKG+ A ++ N G +V Sbjct: 733 -----------QVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERN--GDVVGALA 779 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + D+++LVSD GTLIR+ VN IR R +GV + + + E++ + I +++ +E Sbjct: 780 VTERDELMLVSDHGTLIRIAVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD-EEEG 838 Query: 907 ESTE 910 E T+ Sbjct: 839 EQTD 842 >gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1] gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae] gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1] Length = 869 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/897 (43%), Positives = 561/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + YV AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020] Length = 928 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 569/933 (60%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------------------PEDE 640 + +P S ARG+ L+N+L L+ GE ITT++P E+ Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 641 SSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 S ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGLGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642] Length = 926 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/933 (43%), Positives = 572/933 (61%), Gaps = 104/933 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVV Sbjct: 246 SIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + +++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + +G +LS Q +AILELRL RLTGL + + E + Sbjct: 426 ERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILN 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------PEDESSWN 644 + +P S ARG+ L+N+L L+ GE ITT++P D++ + Sbjct: 605 TYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENS 664 Query: 645 NL------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 + ++ +T +G V++ L F + SG IA++LD D ++S Sbjct: 665 SESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILIS 724 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 725 AAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML------- 776 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 I EE Q ILT SE+ Sbjct: 777 --------------------------------------IPEEGSQ--------ILTASER 790 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT+ +F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R Sbjct: 791 GYGKRTAISEFPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTR 848 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V E+ R T+GV + A DE++V +ER++E Sbjct: 849 VGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 881 >gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] Length = 889 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/916 (43%), Positives = 573/916 (62%), Gaps = 72/916 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++D+ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ S T G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654 G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRG++L + QVI+M + A A+ T+ Sbjct: 720 PM-GRQARGVRGMNLEENQQVIAMLV---APAE-------------------------TA 750 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + SV G+ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 751 GEGAQSVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ + Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853 Query: 895 ERIRESEIVDEAESTE 910 +R+ ES+ + AES E Sbjct: 854 QRVMESD-AEGAESVE 868 >gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1] gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1] Length = 921 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNPD+ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG +LS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636 + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEEADDTVLEGEL 665 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 PE + Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +RI M I E Q ILT Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] Length = 867 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/901 (43%), Positives = 561/901 (62%), Gaps = 76/901 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NPD +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLSNPDATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVREMLTRAESE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + +Y + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL +VK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + +V AT G V++ Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+ Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852 Query: 901 E 901 E Sbjct: 853 E 853 >gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] Length = 881 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/921 (43%), Positives = 570/921 (61%), Gaps = 88/921 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +M WN+ +VK Sbjct: 6 KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG+A+IYD L RMAQD+SLR L++GQGNFGS+DGD AA RYTEC Sbjct: 66 CARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K ++ LL D+ K+TVDF PNYDG +EP VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV++G + ++ N +D L+E++ PDFPTG +I G +G+++ Y TGRG +V+R Sbjct: 186 NITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ + R I+V E+PYQVNK A+LE+IAELVR+K++ I+DLRDESD+ G RVVI Sbjct: 246 THFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F++ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++S +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 +++ Y I SDG LS+ Q + IL++RL RLTGL +D I NE Sbjct: 426 RAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533 + +I + LDIL+ +R+ II EL + K++ RR+ I D+ ED I Sbjct: 486 KDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLATEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ + +D+D++ LFI +TH +L FS Sbjct: 546 TPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646 + G +Y KVW +P GS +RGK ++N+ L GE+IT I+P FP+D Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDR------ 659 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 YV AT G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ V Sbjct: 660 YVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF + +R GR + GVRG++L + QVI++ Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEETQQVIALL--------------------------- 751 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 ++E Q + LT +E GFGKRT ++ R KG Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A S+ N G +VA V+ D+I+L++ G LIR V+EIR RAT+GV + + Sbjct: 787 MIAIQTSERN--GKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVE 844 Query: 887 KDERVVSVERIRESEIVDEAE 907 ++ ++R+ ES++ D E Sbjct: 845 DGTKLSGLQRVVESDVEDAVE 865 >gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18] gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18] Length = 837 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/891 (45%), Positives = 564/891 (63%), Gaps = 84/891 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M M +WNK Y K AR+ Sbjct: 9 SVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R+++ Sbjct: 69 VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMEQ 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG GIAVGMATNIP HNL E Sbjct: 129 LAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLSE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG VA+I+NP + + L+E+I GPDFPTG I GR GI AY+TGRG I +R IE Sbjct: 189 VIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQIE 248 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I I+DLRDESDR+G RVVIELK+ Sbjct: 249 TQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELKK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + ++LN LY+ T +QS F + M+A+ +P TL + F+ R+E+V RRT + Sbjct: 309 DENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRTIFD 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM+R Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMER---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL++RL RLTGL RD I EL + I +IL+S + Sbjct: 413 ----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAE 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L II EL+ +KD+ RR+ IV D+ ED IV EDMVVT+SH GY+KR +++Y Sbjct: 463 ILKIIVGELIELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ ++EDFV LFI ST ++FF+ G VY KV+ +P ARGK Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGK 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L+L E+IT I+P E ++ +++ AT++G V++ + ++ G IA+ Sbjct: 583 AIVNLLNLAANEKITAILPVKE---FVDDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAV 639 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D+++SV + D+LL T G+ +RF +R GR S GVRG++L + D VI Sbjct: 640 NLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRT-VGRVSRGVRGMAL-EDDVVI 697 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 MAI+ E T DS+ Sbjct: 698 GMAIL---------------------------NEHFT----DST---------------- 710 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I TV+E G+GKRT ++R +R GKG+ ++ N G +V + VND++ ++L+ Sbjct: 711 ---IFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERN--GQVVDIKQVNDDNDLMLI 765 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +D+G ++RV V+ I R T+GV + ++ERVV+V R+ E E DE E Sbjct: 766 TDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENE 816 >gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] Length = 1016 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/914 (42%), Positives = 576/914 (63%), Gaps = 67/914 (7%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 I+ ++ K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ Sbjct: 128 IVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELN 187 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD Sbjct: 188 NDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDN 247 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL K AH LL D+ K+TV+F PNYDGS EP +L AR PN+L+NG GIAV Sbjct: 248 AAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAV 307 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TG Sbjct: 308 GMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTG 367 Query: 245 RGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RG +V+R +H E G R+ I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDES Sbjct: 368 RGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDES 427 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 D+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ Sbjct: 428 DKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLL 487 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW+ Sbjct: 488 HRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWD 547 Query: 424 ASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGL 468 + ++D++ + + + + DG LS+ Q + IL++RL RLTGL Sbjct: 548 SGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGL 607 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +D I E + +I + LDIL+ R+ II +EL ++ E RR++I +++ Sbjct: 608 EQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELD 667 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH Sbjct: 668 TEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDY 727 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLY 647 +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE + Sbjct: 728 ILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----F 783 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V AT G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VR Sbjct: 784 VFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVR 843 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR + GVRG++L +G QVI+M + A A+ Sbjct: 844 FDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------- 879 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 T+ + + +V G+ +LT +E G+GKRT ++ R KG+ Sbjct: 880 -----TAGEGEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGM 919 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + Sbjct: 920 IAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGE 977 Query: 888 DERVVSVERIRESE 901 ++ ++R+ ES+ Sbjct: 978 GNKLSGLQRVVESD 991 >gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105] gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105] Length = 870 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/910 (44%), Positives = 567/910 (62%), Gaps = 77/910 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ K+TVDF PNYDGS +EP VL AR PN+LVNG GIAVGMATN+P HNL EV Sbjct: 131 AQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V C+ ID P+ +D L+E+I PDFPT +I G G++ Y TGRG +V+R +H E Sbjct: 191 VAACLYAIDAPECTVDDLIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G RVVIELKRG Sbjct: 251 MDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +VILN LY+ T LQ F +NMVAL +P L ++ F+ R EV+ RRT + L Sbjct: 311 EVPEVILNNLYKNTQLQDTFGINMVALVDGQPRLLNLRDLIFYFLRHRREVITRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KARDR HVL GLA+A+AN+DE + II+ +P P A+ +L+ +SW++S +++++ + Sbjct: 371 RKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVREMLSRTELG 430 Query: 436 DSS-------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 DS + DG LSEVQ + IL +RL RLTGL +D I NE + Sbjct: 431 DSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYKEVID 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + LDILS R+ IIK EL S+ +E RR+ I ++ ED I +DMVVT+ Sbjct: 491 QIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLITPQDMVVTL 550 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY+K PL+ YRAQ+RGG+G+ +++D++ LF+ +TH ++L+FS+ G VY K Sbjct: 551 SHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFSNAGRVYWLK 610 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660 V+ +P GS +RG+ +IN+ L +GE+IT ++P EDE YV AT G V+++ Sbjct: 611 VYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFEDEDK----YVFMATSLGTVKKS 666 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KLSDF + + G IA+ LD D ++ ND++L + G+ VRF + +R GRN Sbjct: 667 KLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDVRAM-GRN 725 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG++L +G +VI+M + ++E+ Sbjct: 726 ARGVRGMNLEEGQRVIAMLV--------------------------AESEQ--------- 750 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 751 -----------------QSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTSERN--GK 791 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V+ VN D+I+L++ G L+R V+EIR RAT+GV + S + + ++RI ES Sbjct: 792 VVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGTWLSGLQRIVES 851 Query: 901 EIVDEAESTE 910 + D E+ E Sbjct: 852 DAEDLGETDE 861 >gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] Length = 807 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/891 (44%), Positives = 561/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE + V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 3 EEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG I++ Sbjct: 183 PPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELV K+I IADLRDESDR G ++ Sbjct: 243 RAKAEIEEHKG-KTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ +DEV+ IIR S A+ LM+R Sbjct: 362 RRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 414 ------------------LSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +K++ +PR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y++Q+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ ++QGE++T ++P + S + YV+ TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ LD DE+++V+ E ++++ T G +RF +R GR + GV ISL Sbjct: 633 NGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPM-GRVARGVMAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H D + Sbjct: 692 EDDEVVEMDLV-HPDGE------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LTV+EKGFGKRT ++RI R+GKGI A +SK + G LV++ V Sbjct: 708 ---------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V +I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807 >gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] Length = 807 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/891 (44%), Positives = 561/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE + V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 3 EEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK Y TGRG I++ Sbjct: 183 PPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELV K+I IADLRDESDR G ++ Sbjct: 243 RAKAEIEEHKG-KTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ +DEV+ IIR S A+ LM+R Sbjct: 362 RRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL RLTGL R + +EL L +IKE +I Sbjct: 414 ------------------LSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +K++ +PR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y++Q+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ ++QGE++T ++P + S + YV+ TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQISQGEKVTAVIPL---KKSDDIKYVLMCTKKGIIKKTSIEEFKSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ LD DE+++V+ E ++++ T G +RF +R GR + GV ISL Sbjct: 633 NGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPM-GRVARGVMAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H D + Sbjct: 692 EDDEVVEMDLV-HPDGE------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LTV+EKGFGKRT ++RI R+GKGI A +SK + G LV++ V Sbjct: 708 ---------VLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSK--KTGKLVSIRCVQPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V +I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVKDISKMHRDTQGVTLMKLEDGDRVVSTARIESEE 807 >gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3] gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3] Length = 904 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/905 (46%), Positives = 570/905 (62%), Gaps = 37/905 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIIAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSM 422 Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + DD +G +G L+E+Q ILE+RL RLTGL +D + E L Sbjct: 423 LGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL+SVK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P E + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V E DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A DE + +GD + +D+SV Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGSEDEN---EDDNGVEETAANGDA--VIDGADDASV- 772 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDAS-- 873 Query: 903 VDEAE 907 +DE E Sbjct: 874 IDEDE 878 >gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J] gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J] Length = 889 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/916 (43%), Positives = 572/916 (62%), Gaps = 72/916 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++D+ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ S T G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654 G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRG++L + QVI+M + A A+ T Sbjct: 720 PM-GRQARGVRGMNLEETQQVIAMLV---APAE-------------------------TE 750 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + SV G+ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 751 GEGAQSVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ + Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853 Query: 895 ERIRESEIVDEAESTE 910 +R+ ES+ + AES E Sbjct: 854 QRVMESD-AEGAESIE 868 >gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + YV AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI M L++G Sbjct: 727 ARGVRGMQLEDGQQVIPM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + YV AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVRE---FLADKYVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7] Length = 864 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/907 (44%), Positives = 556/907 (61%), Gaps = 85/907 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K AH LL Sbjct: 61 YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV++GC+ Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263 + NPD ++ L+E+I PDFPTG +I G +G++ Y TGRG +++R +H E G+R Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 + I+V +PYQVNK + EKIA+LV +KRI I+D+RDESD+ G R+VIELKRG +VI Sbjct: 241 QAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVI 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P L I++ F+ R EVV RRT + L KAR+R Sbjct: 301 LNNLYKNTQLQDTFGMNMVALVDGQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436 HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ DD Sbjct: 361 GHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPGGR 420 Query: 437 ---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + + DG LSEVQ + IL +RL RLTGL +D I E + I + Sbjct: 421 AAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADL 480 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDMVVTVS 543 LDIL+ R+ II ELL++K E T RR+ I +++ ED I DMVVT+S Sbjct: 481 LDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTLS 540 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+K PLS YRAQ+RGG+G+ M++ D+V LFI +TH +L FS G VY KV Sbjct: 541 QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWLKV 600 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660 W +P GS +RG+ ++N+ L E+IT ++P F ED YV AT G V++ Sbjct: 601 WEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDH------YVFMATSRGTVKKT 654 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LSDF ++G IA+ LD D ++ + +D++L + G+ VRF + +R GR Sbjct: 655 PLSDFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPM-GRT 713 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G VI+M L++GD Sbjct: 714 ARGVRGMMLEEGQVVIAM-------------------------LVAGD------------ 736 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + Q +LT +E GFGKRTS ++ R KG+ A S N G Sbjct: 737 ---------------ETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARN--GK 779 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V +D+I+L++ G L+R V+EIR RAT+GV + S + + V R+ ES Sbjct: 780 VVGAVLVRPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDNSMLSGVRRVVES 839 Query: 901 EIVDEAE 907 + D+ E Sbjct: 840 DADDDVE 846 >gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] Length = 848 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/903 (43%), Positives = 576/903 (63%), Gaps = 69/903 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+D C+ ++ +PDID+ LM I PDFPT +I G +GIK+ Y TGRG ++ Sbjct: 182 IPPHNISEVIDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ G+R I++ E+PYQVNKA +L +I ELVR+KRI I+DLRDESD+ G Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +VILN LY+ T +Q F +NMVAL +P L +L F+ R EV Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM R+W +S ++ Sbjct: 362 ITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVE 421 Query: 429 DLI--DLIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++ +ID +++ + T + LS+ Q +AIL+LRL RLTGL ++ I +E Sbjct: 422 EMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYK 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I++ L++L++ R+ II +EL ++K + PRR+ +V D+ ED I DM Sbjct: 482 EILDKIRDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDM 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K L Y+AQ+RGG+G+ + R++DF+ +LFI +TH +L FSSLG V Sbjct: 542 VVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P GS +RG+ + N++ L Q E+I ++P +S + YV AT G V+ Sbjct: 602 YWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPV---KSFDDTRYVFMATAGGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F + +G IA+ LD D ++ V ++D++L + G+ +RF + +R G Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRG+ L +VIS L+ D+E +T Sbjct: 718 RNARGVRGMKLGAEQKVIS--------------------------LLVADSENMT----- 746 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +LT +E G+GKRTS ++ NR +G+ A + +K N Sbjct: 747 ---------------------VLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRN-- 783 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA V ND+I+L++ G +IR V+EIR RAT+GV++ + E++ +ERI Sbjct: 784 GKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIREMGRATQGVILINLDAGEKLAGLERIV 843 Query: 899 ESE 901 E++ Sbjct: 844 ETD 846 >gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1] Length = 919 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG +LS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636 + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDEADDTVLEGEL 665 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 PE + Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +RI M I E Q ILT Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1] gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1] Length = 919 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG +LS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636 + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEADDTVLEGEL 665 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 PE + Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +RI M I E Q ILT Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] Length = 882 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/897 (43%), Positives = 560/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ Sbjct: 191 VDACQHLLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM R+W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVREMLSRAETE 430 Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + T G SDG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL S+K E RR++I ++ ED I ++MVV Sbjct: 491 MAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYS 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ +INI L +GE+IT ++P E + + +V T G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F ++ R G IA+ LD D ++ ++D++L + G+ VRF + +R GR Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G VI++ L++GD Sbjct: 727 ARGVRGMQLEDGQNVIAL-------------------------LVAGD------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 793 VVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849 >gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3] gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3] Length = 871 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/915 (43%), Positives = 567/915 (61%), Gaps = 81/915 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP++L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPQASIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R ++V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLECFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+D+ + +I+ +P P AR+ELM RSW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARAEAE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMGTSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899 +VA V +I+L++ G LIR V+EIR RAT+GV + S + R+ +++I E Sbjct: 793 VVAATLVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTRLSGLQQIAEA 852 Query: 900 ---SEI-VDEAESTE 910 SEI D+A +E Sbjct: 853 DADSEIDADDASESE 867 >gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12] gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12] Length = 905 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/898 (44%), Positives = 567/898 (63%), Gaps = 59/898 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + R+AQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ R P +L+NG GIAVGMATNIP HN+ Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPHNM 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG ++R + Sbjct: 188 TEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRSKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 ++ RE+I+V EIPYQVNKA ++EKIAELV++K+I I LRDESD+ G R+VIE+K Sbjct: 248 VQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +++ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMIECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH+L LAIA+AN+D ++ +I+ SP P A+ +L+ + W ++ +++ Sbjct: 368 ELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I DG YL++ Q +AIL+LRL +LTGL + I E L I Sbjct: 428 DDAARPEWLEPEYGI-RDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDIIAA 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RLL +IK+EL + + RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG+S ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARG+ ++N+L L++GE IT I+P E ++ Y++ AT HG V++ L + Sbjct: 607 PLASRQARGRPIVNLLPLSEGEHITAILPVRE---YADDKYIIMATSHGTVKKTALKAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +G IA+ L DE++ V+ +NDI+L + G+ VRF N + VR Sbjct: 664 NPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRF-----------NEM-VRD 711 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVE 782 S ++ D + +E + ++ M + G D +++ SL Sbjct: 712 ----------SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQKVVSL------- 754 Query: 783 GNISEERCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + KE ILTV+E G+GKRTS ++ +R+ KG+ + VS+ N GA+ Sbjct: 755 ----------IVPKENGAILTVTENGYGKRTSLEEYPAKSRATKGVVSIKVSERN--GAV 802 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V V +ND+I+L+SD+GTL+R P + R T+GV I + E+VV ++RI E Sbjct: 803 VGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRIVEGEKVVGLQRIDE 860 >gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] Length = 895 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/915 (44%), Positives = 574/915 (62%), Gaps = 82/915 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVDF PNYDG+ Q PVV+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252 NL EVV GC+A+ID+PD+ +D LME I GPDFPT +I GR GI AY TGRG + IR Sbjct: 186 NLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRVYIRAR 245 Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 V H KT R+ +++TE+PYQ+NK+ ++EKIAELV+EKR+ I +LRDES+++G RV Sbjct: 246 HEVEHDAKTK--RDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG + DVI+N L++ T L+++F +NMVAL +P L +L AF+ R EVV Sbjct: 304 VIELRRGENPDVIINNLFKQTQLETVFGINMVALIDGEPRILNLKEMLDAFIRHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR+R H+L GLA+A+AN+DE++ +I+ SP+ A+ +L+ + W + D+ + Sbjct: 364 RRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMAM 423 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ DD G +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 424 LERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREILE 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + LDIL + RL+ +I+ EL ++ +E RRT I D+ D I E++VVT+ Sbjct: 484 RIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY + Sbjct: 544 SHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLR 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 V+ +P S +RG+ ++NIL L++GERITT +P +PED+ +V+ AT G V++ Sbjct: 604 VFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKK 657 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L +F + SG IA+ LD D ++ +I+L + G+ VRF A+R + R Sbjct: 658 TPLPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS-R 716 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI +A+G V+S+ I D Sbjct: 717 TARGVRGIRMAEGHHVVSLII-----------------------------------PQDD 741 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +V +L SE G+GKRT+ +F R +G+ A S N G Sbjct: 742 AV------------------LLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN--G 781 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIR 898 LV + D D+++L+SDKGTL+R +E+ + SR T+GV +I + +DER+V VERI Sbjct: 782 NLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIA 841 Query: 899 ES---EIVDEAESTE 910 E+ EI+ E E Sbjct: 842 ETDAEEIIGEDTEVE 856 >gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48] gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas entomophila L48] Length = 920 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGLINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G +G YLS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I++ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWLKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------- 640 + +P S ARG+ L+N+L L +GERIT ++ PE+E Sbjct: 606 YDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIEGEL 665 Query: 641 -------------SSW----NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 W Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GR + GVRG+ L KG ++ISM Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQRIISML---- 780 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I E Q ILT Sbjct: 781 -----------------------------------------IPESGAQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLTGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ R T+GV + A DE +V VER++E Sbjct: 850 RTRVGEVSSLGRNTQGVTLIKLAADETLVGVERVQE 885 >gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] Length = 830 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/884 (43%), Positives = 567/884 (64%), Gaps = 89/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++GV +K + K A Sbjct: 8 IVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R LL++G GNFGSVDGD AA RYTE RL Sbjct: 68 RIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + ++ D+ K+TVD+RPN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V +ID+ + +++ ME I+GPDFPTG +ILG GIK+AY TGRG I +R + Sbjct: 188 GEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKVRAKAS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S R+ I+V EIPYQVNKA ++EKIAELVR+K+I I+DLRDESDR+G R+VIELK Sbjct: 248 IEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+LY++T L+ F V M+A+ +P+ L +L ++ +++++VRRTK+ Sbjct: 308 RDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIVRRTKF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA DRAH+L GL IA+ NLDEV+++IR S N + A+ LM++ Sbjct: 368 DLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEK--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL +LTGL + + E L I +IL++ Sbjct: 413 -----------FSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANER 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL IIK+ELL ++++ RRT I G ++M D + ED+V+T++H GY+KR+P+ Sbjct: 462 LLLDIIKEELLEIREKYADKRRTEIAIDPGSINMID--LVDEEDVVITLTHFGYIKRLPI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR+Q+RGGKG SGV RDEDFV L I STH+ +LFF++LG VYK V+ +P G QA Sbjct: 520 DTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQA 579 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G A++N+L L+ E+I ++P D N Y+V AT+ G +++ +L F ++G Sbjct: 580 KGTAIVNLLQLSANEKIAAVIPVDRD---CNEQYLVMATQKGIIKKTELCQFDNTRKTGL 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ + DE++SV +E +I + T G +RF +R GR ++GV+GI+LA+ D Sbjct: 637 MAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDM-GRTAMGVKGINLAEKD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V++M VL + D Sbjct: 696 YVVAME-VLEDNKD---------------------------------------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L VSE G GKRT ++R+ R GKGI+ VSK + G L+ V D+D+I Sbjct: 709 ------LLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSK--KTGNLIGAKIVEDHDEI 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L++++G +IR+ V I RAT+GV + +T ++ +VS+ +I Sbjct: 761 LLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQI 804 >gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] Length = 885 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 572/905 (63%), Gaps = 67/905 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL D+ K+TV+F PNYDGS EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKR+ I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM RSW++ +++++ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVREMLS 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I +D Sbjct: 486 REVMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 LVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT G Sbjct: 606 LYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSKGT 661 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 662 VKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM 721 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRG++L +G QVI+M + A A+ T+ + Sbjct: 722 -GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------------TAGE 752 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +V G+ +LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 753 GEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ ++R Sbjct: 798 --GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQR 855 Query: 897 IRESE 901 + ES+ Sbjct: 856 VVESD 860 >gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+R GLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + YV AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFSA---DKYVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN] gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN] Length = 878 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/897 (43%), Positives = 558/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ Sbjct: 191 VDACQHLLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETE 430 Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + T G SDG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVV Sbjct: 491 MAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYS 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ +INI L +GE+IT ++P E + + +V T G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F ++ R G IA+ LD D ++ ++D++L + G+ VRF + +R GR Sbjct: 668 PLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G VI++ L++GD Sbjct: 727 ARGVRGMQLEDGQNVIAL-------------------------LVAGD------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 793 VVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849 >gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 900 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/919 (43%), Positives = 574/919 (62%), Gaps = 62/919 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLRKIAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ C+ V+ NP+ +D L+EII PDFPT +I G G++ Y TGRG +V Sbjct: 182 IPPHNLDEVISACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQGVREGYRTGRGRVV 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E G R+ I+V E+PYQVNK +LE+IAELV EK++ I+DLRDESD+ G Sbjct: 242 MRAKTHFEDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR HVL GLA+A+AN+DE + II+ + NP A++ELM ++W++S ++ Sbjct: 362 VTRRTIFELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + Y + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528 NE + EI + LD+L+ R+ +I+ EL V+ E DT RR+ I ++ Sbjct: 482 VNEYKEVMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELF 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +DMVVT+S+ GY+K PLS YRAQ+RGG+G+ ++ED++ LF+ +TH Sbjct: 542 TEDLITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDI 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L FS G +Y KVW +P GS +RGK ++N+ L +GE+IT I+P + ++ YV Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDDHYV 658 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ +LSDF ++G IA+ L+ D ++ ++D++L + G+ VRF Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L G QVI+M + + D Sbjct: 719 DENDVRPM-GRTARGVRGMNLGDGHQVIAM-------------LVAPAEAAEGAEAAVVD 764 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 N +++ ++ LT +E G+GKRT ++ R KG+ Sbjct: 765 A-------NGAAIPSSV---------------LTATENGYGKRTPIAEYTRHGRGTKGMI 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ N G +VA V+ DQI+L++ G L+R V+EIR RAT+GV + + + Sbjct: 803 AIQTTERN--GKVVAAALVSPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEG 860 Query: 889 ERVVSVERIRESEIVDEAE 907 R+ ++RI ES+ DE + Sbjct: 861 TRLSGLQRIAESDSDDETD 879 >gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440] gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440] Length = 923 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/936 (43%), Positives = 559/936 (59%), Gaps = 106/936 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYMRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G R+V Sbjct: 246 SEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY+ T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ W +S ++ ++ Sbjct: 366 RTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMV 425 Query: 432 DLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + +D G DG +LS Q +AIL+LRL RLTGL + + E + + Sbjct: 426 ERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E + ILSS RL+ +I++EL +++ E RRT I+ D+ D I E+ VVT+S Sbjct: 486 IGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PLS Y+AQRRGGKG+S ++DED++ L + ++H ++L FSS G VY +K Sbjct: 546 HGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYWKKT 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------------- 636 + +P S ARG+ L+N+L L +GERIT ++ Sbjct: 606 YEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLEGEL 665 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 PE + Y+ AT G V++ L F + +G IA+KL D Sbjct: 666 VEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKEGDT 725 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R GRN+ GVRG+ L KG Sbjct: 726 LIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKG----------- 773 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 +RI M I E Q ILT Sbjct: 774 ------QRIISML----------------------------IPESGSQ--------ILTA 791 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKRT F R G+G+ A N G L+ V + ++I+L+SD+GTL+ Sbjct: 792 SERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQGTLV 849 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 R V E+ SR T+GV + A DE +V +ERI+E Sbjct: 850 RTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQE 885 >gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/897 (43%), Positives = 559/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ YL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +L F+A R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P AR+ LM +SW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++++ + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + YV AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGG------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQTSERN--GR 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] Length = 904 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/905 (45%), Positives = 570/905 (62%), Gaps = 35/905 (3%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNPDID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422 Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G +G L+E+Q ILE+RL RLTGL +D + +E L Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL++VK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P E + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V E DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A DE I+ + + + +D+SV Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDE-----NEDDNGVEEIAANGDAVIDGADDASV- 772 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875 Query: 903 VDEAE 907 DE E Sbjct: 876 EDEDE 880 >gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804] gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii] Length = 885 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP+ +D L+E+I PDFPTG +I G +G++ Y TGRG +V+R +H E Sbjct: 191 VDGCLYCLRNPECSVDELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVVMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV EK+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +VILN LY+ T LQ F +N+VAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVILNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIHYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM R+W++S +++++ D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVREMLSRADLD 430 Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 S+ + DG LS+ Q + IL +RL RLTGL +D I E + Sbjct: 431 AVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDVMA 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II +EL ++K E T RR+ I +++ ED I DM Sbjct: 491 TIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDLITPTDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH +L FS G V Sbjct: 551 VVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLCFSDRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RG+ ++N+ L GE+IT ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDN------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG++L G VI++ L++GD Sbjct: 725 M-GRNARGVRGMTLEDGQSVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRTS ++ R KG+ A S Sbjct: 752 --------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V V +D+I+L++ G L+R V+EIR RAT+GV + S + V Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGSSLSGVR 849 Query: 896 RIRES 900 R+ ES Sbjct: 850 RVVES 854 >gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505] Length = 899 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/927 (44%), Positives = 578/927 (62%), Gaps = 100/927 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +H LL DL K+TVDF PNYDG+ P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+GC+A+I NPD+ + LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R + Sbjct: 188 TEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARAD 247 Query: 256 IE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IE + +G RE I+V EIPYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE Sbjct: 248 IETDEKTG-RETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG +VILN LY T LQ++F +NMVAL +P+ F L +L+ F+ R EVV RRT Sbjct: 307 IKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KARDRAH L GLAIA+AN+D ++ +IR SP P A+ L R W +++ +++ Sbjct: 367 VFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLEK 426 Query: 434 IDDSSYT--------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + + +G DG Y+SE Q +AIL+LRL +LTGL + I E +L I Sbjct: 427 AGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLELI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL++ RL+ +I+ EL+ +K++ RRT I D+ ED I E++VVT+SH Sbjct: 487 AELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M+DEDF+ L + +TH ++L FS+ G +Y KV+ Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L ERIT I+P + ED+ Y+ AT G V++ Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYAEDK------YIFMATAFGTVKKTP 660 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L+ + + SG IA+ L+ D ++ V+ N+I+L T G+ VRF Sbjct: 661 LTAYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDENG 720 Query: 709 -PI------SAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 P+ IR GR + GVRGI +A +V+S+ + Sbjct: 721 NPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRVVSLIVP---------------- 764 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 K D ++ LTV+E G+GKRT D+ Sbjct: 765 ------------------KTDGAI-------------------LTVTENGYGKRTQLEDY 787 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 +R+ +G+ + VS+ N GA+V V+DND+I+++S++GTL+R VNE+ R T Sbjct: 788 PSKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNT 845 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVD 904 +GV++ T +E+VV ++RI E E+ + Sbjct: 846 QGVILIRTIDEEQVVGLQRIEEIEVTE 872 >gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000] gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum GMI1000] Length = 885 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/907 (43%), Positives = 575/907 (63%), Gaps = 71/907 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM R+W++ +++++ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLS 425 Query: 433 LIDDSSYTIG----------------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 + S T+G +G +Y LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAE--SDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQ 483 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I Sbjct: 484 EYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITP 543 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654 G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRG++L +G QVI+M + A A+ T+ Sbjct: 720 PM-GRQARGVRGMNLEEGQQVIAMLV---APAE-------------------------TA 750 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + +V G+ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 751 GEGEQAVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ + Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGL 853 Query: 895 ERIRESE 901 +R+ ES+ Sbjct: 854 QRVVESD 860 >gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893] gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893] Length = 859 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 577/914 (63%), Gaps = 81/914 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVDF NYDG+ Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252 NL E+V+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGIINGRAGIVEAYRTGRGRIYIRAR 245 Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + H +KT +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G RV Sbjct: 246 HEIEHDKKT--NRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG + DV++N L+ +T LQ++F +NMVAL +P+ L +L AFV R EVV Sbjct: 304 VIELRRGENPDVVINNLFAHTQLQTVFGINMVALINGEPKILNLKEMLDAFVRHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP A+ +LM + W D+ + Sbjct: 364 RRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLAM 423 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ DD G +G +LS Q +AIL+LRL RLTGL + ++NE + Sbjct: 424 LERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDILE 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + L+IL RL+ +I++EL +V E R T I D+ D I ED+VVT+ Sbjct: 484 KIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY + Sbjct: 544 SHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLR 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 V+ +P S +RG+ ++NIL L +GERITT +P +PED+ YV+ AT G V++ Sbjct: 604 VFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYPEDQ------YVLMATSAGVVKK 657 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L +F + +G IA+ LD D ++ + +++L + G+ VRF A+R + R Sbjct: 658 TPLPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS-R 716 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRGI + +G V+S+ I+ DA Sbjct: 717 TARGVRGIRMPEGHHVVSL-IIPQEDA--------------------------------- 742 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +LT SE G+GKRT+ +F +R +G+ A S+ N G Sbjct: 743 -------------------VLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN--G 781 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIR 898 LV + + D+++L+SDKGTL+R +E+ + SR T+GV +I + +DER+V VERI Sbjct: 782 NLVTALQLFEGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIA 841 Query: 899 ES--EIVDEAESTE 910 E+ E VD E ++ Sbjct: 842 ETDAEEVDGEEGSD 855 >gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] Length = 855 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/905 (44%), Positives = 570/905 (62%), Gaps = 81/905 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +N+ Y K ARI Sbjct: 11 VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +H +L D+ K+TVDF PNYDGS EP+++ R PN+L+NG GIAVGMATN P HNL EV Sbjct: 131 SHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNFPPHNLTEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++G +A++ P+ +D LME I GPDFPT +I G +G+++ Y TGRG +V+RG +H+E Sbjct: 191 INGLLALLQKPETSIDELMEFIPGPDFPTSGIIHGISGVRDGYRTGRGRVVMRGKTHVES 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+RE I+V E+PYQVNK +EKIAELV +K+I I+DLRDESD+ G RVVIELK+G Sbjct: 251 LERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMRVVIELKKG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +VILN LY+ T LQ F +NMVAL +P L IL AF+ R EV+ RRT Y L Sbjct: 311 EIPEVILNNLYKQTQLQDNFGMNMVALIDGQPRLLNLREILDAFLKHRREVITRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R H+L GLA+A+AN+DE+++II+ +P P A++ELM+RSW ASD+ + ++ S Sbjct: 371 KKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSW-ASDV--VSSMLKKS 427 Query: 438 S------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 S Y + DG LS+ Q + IL+LRL RLTGL ++ I E +++ + I Sbjct: 428 SQDLSKPDGLSVLYGLKEDG-YRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIMVTII 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + LDIL+ R+ II +EL ++ + RR+ IV D+ ED I +DMVVT+S+ Sbjct: 487 DLLDILNKSERVTSIISEELTEIRSQYGDDRRSEIVTDAYDLSIEDLIAPQDMVVTLSNS 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+K L YRAQ+RGG+G+ + +++DF+ +F+ ++H ++L FSS G VY KV+ Sbjct: 547 GYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQVYWLKVYE 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662 +P GS +RGK ++N+ L GE+I I+ F +DE Y+ AT G V++ L Sbjct: 607 VPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFVDDE------YIFMATAKGTVKKTPL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 SDF +SG IA+KL + D ++ E DI+L + G+ V F +R GRN+ Sbjct: 661 SDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSM-GRNAA 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +QV+S+ LI+ EE Sbjct: 720 GVRGMKLPDTEQVLSL-------------------------LIASSNEE----------- 743 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 +L +E G+GKRT +FR S R +G++A VS N G +V Sbjct: 744 ----------------SVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRN--GIVV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A V D+D+I+L++ G LIR V+EIR RAT+GV + + + E++ +E+I ES+ Sbjct: 786 AAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGIEKIVESDH 845 Query: 903 VDEAE 907 +D+ + Sbjct: 846 IDDGQ 850 >gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] Length = 812 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/892 (43%), Positives = 569/892 (63%), Gaps = 83/892 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + I+ EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M++ G+ +K Sbjct: 2 ENKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++++Y A+ +MAQD++ R LL++GQGNFG+VDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + A LL D+ K+TVDF PN+D S QEP+VL A+YPN+LVNG GIAVGMAT+I Sbjct: 122 TEARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+D V IDN D + LME I GPDFPTGA+I+G GIK AY TGRG + + Sbjct: 182 PPHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QIV+TEIP+QVNK+ ++E+IA+LVR+K++ I+DLRDE++R G RV Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR +A++ILN LY+++ L+ FS+ +A+ P+ L L+ +V +++V+ Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA+ RAH+L GL IA+ N+D V+ IIR S N + A+ +L++ Sbjct: 362 RRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q +AIL++RL RLTGL RD I NE L I I Sbjct: 412 ----------------FALSDIQAQAILDMRLQRLTGLERDKIDNEYKELMERITYLESI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L G+IK E+L++KD+ PRRT I ++ +D E++ +T++HLGY+KR Sbjct: 456 LADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGG+G S + R+EDFVTDL +TH+ +LFF++ G VYK + +P G Sbjct: 516 LPADTYKSQKRGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGK 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669 ++G A++N+L LN GE+I + F D +L Y++FATK G V++ +SDF IN Sbjct: 576 RTSKGTAIVNLLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNIN 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SG IA+ L DE++ V E DI+L T+ G +RF + +R GR + GV+GI+L Sbjct: 636 KSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSM-GRTATGVKGITL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +KGD V+SM LIS T+ Sbjct: 695 SKGDHVVSMD------------------------LISNGTD------------------- 711 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L VSEKGFGKRT + ++R R+GKGI+ +++ ++ G LV V++ Sbjct: 712 ----------LLVVSEKGFGKRTETEEYRPQIRAGKGIKTYNIN--SKTGKLVGATLVDE 759 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +D++++++ G LIR+ VNEI I R T GV + T ++ VVS+ +++ E Sbjct: 760 DDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDEEVEVVSIAKLKGEE 811 >gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ] gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ] Length = 910 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/952 (42%), Positives = 571/952 (59%), Gaps = 113/952 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DGC+A+ID+P++ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE G R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G RVV Sbjct: 246 AEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +V+LN LY T LQS+F +N+VAL +P L +L+ FV R EVV R Sbjct: 306 IELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQPRLLNLKDMLEVFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVEAMV 425 Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + Y + DG YLS Q +AIL+LRL RLTGL + + E + Sbjct: 426 ERAGADACRPEELGPQYGL-RDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILG 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL+S RLL +I++EL +K E RRT IV +D+ D I E+ VVT+ Sbjct: 485 QIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGGKG++ ++DED+V L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF----------PEDE------------ 640 + +P S +RG+ L+N+L L++GE IT ++ +DE Sbjct: 605 TYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALLEGE 664 Query: 641 ------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + Y+ AT G V++ L F + ++G IA+ L D Sbjct: 665 VVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLVEGD 724 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ T +++L + G+ +RF +R GRN+ GVRG+ L KG ++ISM Sbjct: 725 TLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTM-GRNARGVRGMKLGKGQRLISML--- 780 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 I E Q ILT Sbjct: 781 ------------------------------------------IPESGAQ--------ILT 790 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 SE+G+GKRT F R G+G+ A ++ N GAL+ V + ++I+L+SD+GTL Sbjct: 791 ASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIGAVQVREGEEIMLISDQGTL 848 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-----EIVDEAEST 909 +R V+E+ R T+GV++ A+DE +V +ER++E E+ D+ E+T Sbjct: 849 VRTRVDEVSSLGRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDEETT 900 >gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] Length = 906 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/918 (43%), Positives = 567/918 (61%), Gaps = 93/918 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Y K A Sbjct: 8 VSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 DKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A+I+NPD+ +D L+E I GPDFPT +I GR GI + Y TGRG + IR + Sbjct: 188 GEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGIINGRKGIIDGYKTGRGKLKIRAKAR 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V E+PYQVNKA ++EKIAELV++K+I I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +VILN LY T +QS F +NMVAL+ +P+ L +L AF+ R EVV RRT Sbjct: 308 KRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQPKLLNLKEMLHAFILHRREVVTRRTV 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL- 433 + L KAR RAH+L GLAI++AN++ ++ +IR S P A+ L + W ++ +++ Sbjct: 368 FELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAMLEAS 427 Query: 434 ------IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G D ++++ Q +AIL++RL +LTGL + I NE L I Sbjct: 428 GVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEIITA 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL + RL+ +I +EL V+ RRT I D+ ED I ED+VVT+SH G Sbjct: 488 LLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVTLSHEG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S M+DEDF+ L + STH ++L FS+ G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWLKVFQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARG+ +INIL L QGERIT I+P + ++ +V AT +G V++ LS + Sbjct: 608 PLASRQARGRPIINILPLEQGERITAILPV---RTYDDDKFVFMATANGTVKKTALSAYS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------PI-- 710 + SG IA+ L+ +E++ EN+I++ + G+ VRF P+ Sbjct: 665 RPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQGNPVLD 724 Query: 711 ---------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 +R GR + GVRGI L +G++ +S+ + Sbjct: 725 ENGVQEIKFKGVRPM-GRTATGVRGIKLKEGEKAVSLIV--------------------- 762 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + G+I LT +E G+GKRT D+ + Sbjct: 763 -----------------PNATGHI---------------LTCTENGYGKRTPLSDYASKS 790 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R+ +G+ + VS+ N G +V V++ND+I+L+S++GTL+R PV+ + I R T+GV Sbjct: 791 RATQGVISIKVSERN--GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRNTQGVT 848 Query: 882 IFSTAKDERVVSVERIRE 899 + T DE++V+++RI E Sbjct: 849 LIRTRDDEKIVALQRIEE 866 >gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] Length = 873 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/923 (43%), Positives = 569/923 (61%), Gaps = 89/923 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ +VK Sbjct: 6 KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD AA RYTEC Sbjct: 66 CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A LL DL K+TVDF PNYDG +EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+DG + V+ N D +D L+EII PDFPTG +I G +G+++ Y TGRG +V+R Sbjct: 186 NITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ + R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ + II+ +P P A+ +LM R+W++S +++++ Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + Y I +DG LS+ Q + IL++RL RLTGL +D I NE Sbjct: 426 RTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533 + +I + LDIL+ R+ II EL K+E RR+ I D+ ED I Sbjct: 486 KEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YRAQ+RGG+G+ + +D+D++ LFI +TH +L FS Sbjct: 546 TPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646 + G +Y KVW +P GS +RGK ++N+ L GE+IT I+P FPED Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDH------ 659 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+ AT G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ V Sbjct: 660 YIFMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF + +R GR + GVRG++L +G QVI++ Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEEGQQVIALL--------------------------- 751 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 ++E Q + LT +E GFGKRT ++ R KG Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A S+ N G +VA V+ +D+I+L++ G LIR V EIR RAT+GV + + Sbjct: 787 MIAIQTSERN--GKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVE 844 Query: 887 KDERVVSVERIRESEI-VDEAES 908 ++ ++RI ES++ VD+ +S Sbjct: 845 DGTKLSGLQRILESDVEVDDDQS 867 >gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50] gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822] Length = 893 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG +++R +H E Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ +D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGD 430 Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + Y + DG LSE Q + IL +RL RLTGL +D I E + Sbjct: 431 AAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMA 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II +EL ++K E T RR I +++ ED I DM Sbjct: 491 TIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH +L FS+ G V Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RGK ++N+ L GE++T ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG+ L +G VI++ L++GD Sbjct: 725 M-GRNARGVRGMMLEEGQTVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRT ++ R KG+ A S Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V V +D+I+L++ G L+R V EIR RAT+GV + S + V Sbjct: 792 N--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVR 849 Query: 896 RIRES 900 R+ ES Sbjct: 850 RVVES 854 >gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] Length = 893 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/892 (45%), Positives = 554/892 (62%), Gaps = 70/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G +WNK Y K A Sbjct: 8 IVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL KDTVDF PNYD + Q P VL R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 TKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A+I+NP+I +D LME I GPDFPT A+I GR GI AY TGRG I +R + Sbjct: 188 TEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAIINGRAGIIQAYRTGRGRIYVRAKAD 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE I++TEIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G RVVIE+ Sbjct: 248 IEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR +V+LN L+ T LQS+F +N+VAL +P+ L ++ F+ R EVV RRT Sbjct: 308 KRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQPKILNLQQLIHHFLRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+RAH L G AIA+ N+DE++ +I+ SP+ AR L+ R WN + ++D Sbjct: 368 YLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQMLDRA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + Y + DG +LS Q + ILELRL RLTG+ D I E EI Sbjct: 428 GAQATRPEWLEDHYGL-RDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLEEIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E DIL +RL+ +I++EL +V +E RRT I+E L D+ ED I ED VVT+S+ Sbjct: 487 EYQDILGDLTRLMTVIREELEAVVEEFGDERRTEIIESLHDLTIEDLITEEDRVVTISNG 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K PLS Y+AQRRGG G+S ++DEDFV L + STH ++L F++LG VY KV++ Sbjct: 547 GYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTNLGKVYWLKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ +RG+ +IN+L L +GERI++I+P E + + +V+ AT +G V++ L + Sbjct: 607 IPVAGRNSRGRPVINLLPLGEGERISSILPVEEYSA---DKFVIMATANGTVKKTSLEQY 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + G A+ L D ++ ++D++L + G+ VRF + R GR S GVR Sbjct: 664 SRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSM-GRVSKGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L +G +VISM + Sbjct: 723 GMRLPEGHEVISMV---------------------------------------------V 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 EE + F+LTV E G+GKRT +F R GKG+ A S+ N G LV Sbjct: 738 PEE--------DGFLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERN--GPLVGAT 787 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + D+I+L+SD+GT++R +E+ + R T+GV I E +V + RI Sbjct: 788 QLFAGDEIMLISDQGTMVRTRGDEVSVVGRNTQGVRIIRLKDSENLVRLARI 839 >gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99] gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99] Length = 907 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/913 (44%), Positives = 561/913 (61%), Gaps = 89/913 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYDG+ P V+ R P +L+NG GIAVGMATNIP HN+ Sbjct: 128 DKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI AY TGRG ++R + Sbjct: 188 TEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRAIMRSKAD 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 ++ RE+I+V E+PYQVNKA ++EKIAELV++K+I I LRDESD+ G R+VIE+K Sbjct: 248 VQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIEIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG +V+LN LY T +Q F +NMVAL +P+ F L +L+ F+ R EVV RRT + Sbjct: 308 RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRTVF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L LAIA+AN+D ++ +I+ S P A+ +L+ + W +K +++ Sbjct: 368 ELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAMLEKAG 427 Query: 436 DSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + Y I D YL+E Q +AIL+LRL +LTGL + I E L I Sbjct: 428 DDAARPEWLEPEYGI-RDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEIIAA 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RLL +IK+EL + + RRT I +DM ED I ED+VVT+SHLG Sbjct: 487 LLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K PL+ Y+AQRRGGKG+ ++DEDFV L + +TH ++L FS G +Y KV++L Sbjct: 547 YAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQL 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARG+ ++N+L L++GE IT I+P ++ YV+ AT HG V++ L + Sbjct: 607 PLASRQARGRPIVNLLPLSEGEHITAILPV---RDYADDKYVIMATSHGTVKKTALKAYS 663 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------------ 708 +G IA+ L D+++ V+ ++DI+L + G+ VRF Sbjct: 664 NPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAET 723 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + A+R GR + GVRGI L G +V+S+ IV AD Sbjct: 724 NEELVALRPM-GRTATGVRGIRLEDGQKVVSL-IVPKADG-------------------- 761 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 ILT++E G+GKRT+ ++ +R+ KG Sbjct: 762 --------------------------------AILTITENGYGKRTALDEYPAKSRATKG 789 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + + VS+ N GA+V V +ND+I+L+SD+GTL+R P + R T+GV I TA Sbjct: 790 VVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRTA 847 Query: 887 KDERVVSVERIRE 899 + E+VV ++RI E Sbjct: 848 EGEKVVGLQRIDE 860 >gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] Length = 884 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/910 (43%), Positives = 563/910 (61%), Gaps = 76/910 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ YVK Sbjct: 6 KETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPYVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR L++GQGNFGSVDGD AA RYTEC Sbjct: 66 CARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A+ +L D+ KDTVDF PNYDG +EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+DG + V+ N D +D L+EII PDFPT +I G +G+++ Y TGRG IV+R Sbjct: 186 NITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGRIVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ + R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EVV RR Sbjct: 306 ELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLQCFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L +AR+R HVL GLA+A+AN+D+ + II+ +P P A+ ELM R+W++S +++++ Sbjct: 366 TIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVREMLV 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + Y I DG LS+ Q + IL++RL RLTGL +D I NE Sbjct: 426 RTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533 + +I + LDILS R+ II EL + K E RR+ I D+ ED I Sbjct: 486 KEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRSYIEHNATDLGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P+S YR+Q+RGG+G+ + +D+D++ LFI +TH +L FS Sbjct: 546 TPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFAT 652 + G +Y KVW +P GS +RGK ++N+ L GE++T I+P D S+ + Y+ +T Sbjct: 606 NRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDRYIFMST 665 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 666 SLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRFDEND 725 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GVRG++L +G QVI+ L+ + E+ Sbjct: 726 VRPM-GRTARGVRGMNLEEGQQVIA--------------------------LLVAENEQ- 757 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 Q +LT +E G+GKRT ++ R KG+ A Sbjct: 758 -------------------------QSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V +D+I+L++ G LIR V EIR RAT+GV + + ++ Sbjct: 793 SERN--GRVVAATLVEPSDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDGTKLS 850 Query: 893 SVERIRESEI 902 ++RI E ++ Sbjct: 851 GLQRIVEPDV 860 >gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454] gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI 454] Length = 867 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/911 (42%), Positives = 569/911 (62%), Gaps = 74/911 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K H LL D+ K+TVDF PNYDGS +P VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLAKIGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C ++++P +D L+EI+ PDFPT ++ G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACQHLLNHPQASIDELIEIVPAPDFPTAGIVYGVQGVRDGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK+I I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQPKLLNLRELLECFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L +AR+R HVL GLA+A+AN+DE + II+ +P P A++ LM R+W+++ ++D++ Sbjct: 366 TLYELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVRDMLS 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + SDG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAQGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I + LDIL+ R+ II EL+++K E PRR++I ++ ED I +D Sbjct: 486 REVMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +VM+D+D++ LFI +TH +L FS+ G Sbjct: 546 MVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + +V AT G V Sbjct: 606 VYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFLATSLGTV 662 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F + R G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 663 KKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDVRPM- 721 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG+ L +G QVI++ L++G Sbjct: 722 GREARGVRGMQLEEGQQVIAL-------------------------LVAGG--------- 747 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + Q +LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 748 ------------------ESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 788 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA V + +I+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 789 -GRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 847 Query: 898 RESEIVDEAES 908 E++ +AES Sbjct: 848 AETDAEADAES 858 >gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D] gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D] Length = 889 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/907 (43%), Positives = 567/907 (62%), Gaps = 71/907 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL DL K+TV+F PNYDGS EP VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVDGC+ ++ NP+ +D L+E+I PDFPT +I G +G++ Y TGRG +V+R Sbjct: 186 NLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A+AN+DE + II+ +P P A+ ELM RSW++ ++D+ Sbjct: 366 TVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDM-- 423 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ S T G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 424 LVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQ 483 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ II +EL +++ E RR++I +++ ED I Sbjct: 484 EYREVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLITP 543 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ Sbjct: 544 QDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNR 603 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654 G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V AT Sbjct: 604 GRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMATSK 659 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 660 GTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVRG++L + QVI+M + A A+ T+ Sbjct: 720 PM-GRQARGVRGMNLEENQQVIAMLV---APAE-------------------------TA 750 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + S G+ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 751 GEGAQSGAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSE 795 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N G +VA V D+I+L++ G LIR V+EIR RAT+GV + S + ++ + Sbjct: 796 RN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSGL 853 Query: 895 ERIRESE 901 +R+ ES+ Sbjct: 854 QRVMESD 860 >gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] Length = 904 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/905 (45%), Positives = 571/905 (63%), Gaps = 37/905 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP AR ++ R W + + Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422 Query: 431 IDLI-------DDSSYTIGS-DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D +G +G L+E+Q ILE+RL RLTGL +D + +E L Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL RLL +I++EL+SVK E RRT I D++ D I ED+VVTV Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVKR P+SVYRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP ARG+ +IN + L GER+ ++P + +V FATK+G V++ L Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPV---RDYADGQFVFFATKNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F GKIA+ LD D ++ V + DILL G+ VRF +R GR + Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI + G++V+S+ + A DE + +GD + +D+SV Sbjct: 719 GVRGIKMPAGEEVVSLIVAESAGGIEDEN---EDDSGVEEAAANGDA--VIEGADDASV- 772 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 Q+ILT +E G+GKRT D+ R +G+ ++ N G LV Sbjct: 773 ---------------QYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 A + +D+++L+SD GTL+R +EI R T+GV + +KDE++ +VER+ S Sbjct: 816 AAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDAS-- 873 Query: 903 VDEAE 907 +DE E Sbjct: 874 IDEDE 878 >gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] Length = 861 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/903 (43%), Positives = 564/903 (62%), Gaps = 70/903 (7%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D+ K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +W Sbjct: 2 TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 N+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR LI+GQGNFGSVDGD AA Sbjct: 62 NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ + AH LL D+ K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMA Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DGC+AV+ + DI +D L++II PDFPT +I G G+K Y TGRG Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241 Query: 248 IVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +++R +H E GDR+ I+V E+PYQVNKA +LE+I ELVR+K+I I+DLRDESD+ Sbjct: 242 VIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKS 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L IL+ F+ R Sbjct: 302 GMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRR 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S P A+ LM+R W + Sbjct: 362 EVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPL 421 Query: 427 IKDLIDLIDDSSYTIGSDGTM----------YLSEVQTRAILELRLARLTGLGRDDIRNE 476 +++++ +D DG + LSEVQ +AILELRL RLTGL +D I E Sbjct: 422 VEEMLARVDQDKAR--PDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGE 479 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 + I + +DIL+ R+ II EL ++K + RR+ I D+ ED I + Sbjct: 480 YREIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLITPQ 539 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 DMVVTVSH GY+K P+ YR+QRRGG+G+ +D+DF+ LF+ +TH VL FSS G Sbjct: 540 DMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFG 599 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 Y KV+ LP G +RGK ++N+L L +GE+I ++P E ++ +V T +G Sbjct: 600 RCYWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKE---FRDDQFVFMCTANGT 656 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L DF + +G IA+ LD D ++ V ++ ++L + G+ VRF + +R Sbjct: 657 VKKTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAM 716 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRG+ L +G QVIS+ + Sbjct: 717 -GRNATGVRGMMLGEGQQVISLLVT----------------------------------- 740 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 C E +Q +LT S+ G+GKRT + +FR ++R +G+ A D++ Sbjct: 741 -------------CSE----DQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLTDKT 783 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + LVA V + D ++L++ G LIR V+E+R R+ +GV + + + E+++S+ + Sbjct: 784 GL-KLVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKLISLVK 842 Query: 897 IRE 899 + E Sbjct: 843 VAE 845 >gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1] Length = 862 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/874 (45%), Positives = 553/874 (63%), Gaps = 70/874 (8%) Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 +GRA+PD+RDGLKPV RR+LF M +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + Sbjct: 1 VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ K AH LL DL KDTVDF PNY Sbjct: 61 VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 DG+ Q P V+ R PN+LVNG GIAVGMATNIP HNL EV+DGC+A I++ +I ++ LM Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVN 276 E I GPDFPT A+I GR GI+ AY TGRG + IR + +E + RE I+V EIPYQVN Sbjct: 181 EYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 240 Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336 KA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+KR A +V+LN LY T LQ Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVT 300 Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396 F +NMVAL+ +P+ L IL AFV R EVV RRT + L KARDRAH+L LAIA+AN Sbjct: 301 FGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 360 Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD---------SSYTIGSDGTM 447 +D ++ +IR + P A+ L+ W ++ +++ D + + I DG Sbjct: 361 IDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGI-RDGKY 419 Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 YL+E Q +AIL+LRL +LTGL + + +E L I E + IL + RL+ +I++EL++ Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVA 479 Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 +K++ + RRT I D+ ED I +ED+VVT+SH GYVK PLS Y AQRRGGKG+S Sbjct: 480 IKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKS 539 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627 +++EDF+ L + +TH ++L FSS G +Y KV++LP S ARG+ ++N+L L Sbjct: 540 AARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPN 599 Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 ERIT I+P E E +V AT G V++ L++F + +G IA+ L+ DE++ V Sbjct: 600 ERITAILPVREYEEG---CHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGV 656 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + N+++L + LG+ VRFP +R GR + GVRGI+L D+VIS+ I Sbjct: 657 DLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVRGINLNGDDRVISLIIP------ 709 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 GD E ILTV+E G Sbjct: 710 ------------------RGDGE-----------------------------ILTVTENG 722 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKRT+ ++ +R+ +G+ + VS+ N G +V V DQI++++D GTL+R V Sbjct: 723 YGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDAGTLVRTRV 780 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +E+ + R T+GV + TA+DE VV ++R+ E E Sbjct: 781 SEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE 814 >gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] Length = 922 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/939 (43%), Positives = 561/939 (59%), Gaps = 110/939 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252 NL EV+DGC+A+IDN D+ +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 V I+K G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G RV Sbjct: 246 VEVEDIDKVGG-RQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG DV+LN LY T +QS+F +N+VAL +P+ L +L+ FV R EVV Sbjct: 305 VIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ + Sbjct: 365 RRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVEAM 424 Query: 431 IDLID-DSSYTIGSD-------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ DS G D G YLS Q +AILELRL RLTGL + + E + Sbjct: 425 VERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILS 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL+S RL+ +I++EL VK E RRT I+ D+ D I E+ VVT+ Sbjct: 485 LIGELIRILTSPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y AQRRGGKG+S ++DED+V L + ++H ++L FSS G VY + Sbjct: 545 SHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYWLR 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE-------- 640 + +P S ARG+ L+N+L L++GERIT ++ +DE Sbjct: 605 TFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIEGEA 664 Query: 641 --------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 + ++ AT G V++ L F + +G IA+KL+ Sbjct: 665 TEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLEE 724 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +++ +++L + G+ +RF S +R GR + GVRG+ L K ++ISM Sbjct: 725 GDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQRLISML- 782 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 I E Q I Sbjct: 783 --------------------------------------------IPESGAQ--------I 790 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT SE+GFGKRT F R G+G+ A S+ N G LV V D ++I+L+SD+G Sbjct: 791 LTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISDQG 848 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 TL+R V+E+ + R T+GV + AKDE +V +ER++E Sbjct: 849 TLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQE 887 >gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] Length = 893 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/905 (43%), Positives = 557/905 (61%), Gaps = 84/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG +++R +H E Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ +D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGD 430 Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + Y + DG LSE Q + IL +RL RLTGL +D I E + Sbjct: 431 AAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMA 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II +EL ++K E T RR I +++ ED I DM Sbjct: 491 TIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH +L FS+ G V Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RGK ++N+ L GE++T ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG+ L +G VI++ L++GD Sbjct: 725 M-GRNARGVRGMMLEEGQTVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRT ++ R KG+ A S Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V V +D+I+L++ G L+R V EIR RAT+GV + S + V Sbjct: 792 N--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVR 849 Query: 896 RIRES 900 R+ ES Sbjct: 850 RVVES 854 >gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259] gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259] Length = 849 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/905 (43%), Positives = 574/905 (63%), Gaps = 74/905 (8%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 EQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LI+GQGNFGSVDGD AA R Sbjct: 62 AYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP+VL + PN+L+NG GIAVGMATN Sbjct: 122 YTEVRMARIAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL ++ + A++D P D+++L+ I++ PDFPT +I G +G+++ Y TGRG +V Sbjct: 182 IPPHNLTDICNALFALLDAPATDIESLISIVQAPDFPTAGIIYGLSGVRDGYRTGRGRVV 241 Query: 250 IRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R H+E SG ++ I++ E+PYQVNKA +L +I ELVR+K+I IADLRDESD+ G Sbjct: 242 MRATCHVEDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RV IELKRG +ADV+LN LY+ T +Q F +NMVAL +P L +L AF+ R E Sbjct: 302 MRVYIELKRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQPRLLNLKEMLDAFLRHRRE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L KAR+R H+L GLA+A+AN+DE+V +I+ S P A+ L+ R+W ++ + Sbjct: 362 VVTRRTVFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMV 421 Query: 428 KDLIDLIDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 ++++ ID + + +DG +LSE+Q + ILE++L RLT L D I E Sbjct: 422 EEMLARIDPEYSRPVNMGPEFGLHADG-YHLSEIQAQRILEMQLQRLTNLESDKILAEYK 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I + LDIL++ +R+ II++EL V+D+ RR+ IVE DM ED I E+M Sbjct: 481 EIMAKIADLLDILANPARITQIIREELTQVRDQFGDGRRSTIVENAQDMSMEDLIKPEEM 540 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PL YRAQ+RGG+G+ +DEDF+ +F+ +TH +L FS+ G + Sbjct: 541 VVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRL 600 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGN 656 Y KV+ +P G ARGK ++N+L L GE+I+ ++P +DE YV AT +G Sbjct: 601 YWLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFDDEH-----YVFMATANGI 655 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ LS+F + +G IA+ LD D + +D++L + G+ VRF + +R Sbjct: 656 VKKTPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPM 715 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GV G+ LAKG ++IS+ L++ D + Sbjct: 716 -GRAARGVIGMKLAKGAKLISL-------------------------LVAED-------E 742 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ND F+LT +E G+GKRT ++ R+ +G+ A S+ N Sbjct: 743 ND--------------------FVLTATENGYGKRTPIAEYTRHARATQGMIAIQTSERN 782 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V +D+I+L++ G LIR V EIR SRAT+GV + + K E+++S+E+ Sbjct: 783 --GKVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDKGEKLISLEK 840 Query: 897 IRESE 901 + E++ Sbjct: 841 VAETD 845 >gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166] Length = 935 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/948 (42%), Positives = 575/948 (60%), Gaps = 112/948 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 245 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G RVV Sbjct: 246 ADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 306 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 366 RTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMV 425 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 426 ERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILT 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL++ RL+ +I++EL VK + RRT I+E LD+ D I E+ VVT+ Sbjct: 485 QIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVVTI 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGG+G++ +++ED+V L + ++HT++L FSS G VY K Sbjct: 545 SHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------------- 636 + +P S +RG+ L+N+L L++GERIT ++ Sbjct: 605 TYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEH 664 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 +DE + Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 665 DDVDDVEGDDDSDEKDEPT--GAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 722 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R+ GRN+ GVRG+ L +G ++ISM Sbjct: 723 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISML---- 777 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I E Q ILT Sbjct: 778 -----------------------------------------IPEPGAQ--------ILTA 788 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 S +G+GKRT+ +F R G+G+ A ++ N G LV V + ++I+L+SD+GTL+ Sbjct: 789 SVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERN--GPLVGAVQVLEGEEIMLISDQGTLV 846 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAES 908 R V+E+ R T+GV + +K E +V +ER++E E++++ E+ Sbjct: 847 RTRVDEVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEA 894 >gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] Length = 847 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/889 (44%), Positives = 561/889 (63%), Gaps = 61/889 (6%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M +MG +WNK Y K Sbjct: 6 KETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R LI+GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH +L D+ ++TVDF PNYD EP VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+++ C+A++D+ D+ L ++ GPDFPT ++LG G AY +GRG +V+R Sbjct: 186 NLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVMRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE R+ I V+E+PYQVNKA ++E+IAE+V+EKR+ I+DLRDESD+ G R+ I Sbjct: 246 AEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A+V+LN LY++T+LQS+F++NMVAL P+ L LKAF+ R EVV RR Sbjct: 306 ELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + L KARDRAH+L GLA+A+ NLD ++ +IR + +P A+ +++ R W + L+ Sbjct: 366 SIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLA 425 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + S + +DG +LSE Q +AIL+LRL RLTGL +D IR E L I+E L+IL Sbjct: 426 ERGEPSAGLQADG-YHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILG 484 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +RL+ +I+ EL++++D+ RR+ IV + +ED I E+MVVT +H GY+K P Sbjct: 485 SDARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIKAQP 544 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 ++ + AQRRGG+G+ ++EDFV +F STH +VLFFS+LG V+ +KV++LP Sbjct: 545 VTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQSGRS 604 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGK ++N+LSL E ITT++P E + YV T HG V++ L ++ + G Sbjct: 605 ARGKPIVNLLSLAPSEGITTVLPVREFQEGQ---YVCMVTAHGVVKKTPLMEYSRPRSQG 661 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD D +++V + + +L T+ G VRFP +R GR + GVRGISL Sbjct: 662 INAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPM-GRTARGVRGISLDAD 720 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VIS IV D D Sbjct: 721 DRVISAQIV---DPD--------------------------------------------- 732 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 Q ILT + KG+GK T+ ++R +NR GKG+ A + N G +V V ++D+ Sbjct: 733 -----QVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARN--GQVVGALAVKESDE 785 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LVS+ GTLIR+ V IR R +GV + A DE++ + I +++ Sbjct: 786 LMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQ 834 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 21/220 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V V+ G VK+ PL Y R +G + + + D + + + + F+ G Sbjct: 637 VCMVTAHGVVKKTPLMEYSRPR--SQGINAINLDPGDRLVAVCLSDGQREFMLFTRKGMA 694 Query: 599 --YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + E R P+G ARG + +SL+ +R+ + D+ ++ AT G Sbjct: 695 VRFPEDKVR-PMGR-TARG---VRGISLDADDRVISAQIVDPDQ------VILTATAKGY 743 Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713 + + ++ + NR GK IA++ ++R+ +++ + ++++L + G +R + I Sbjct: 744 GKLTNVEEYRRTNRGGKGVIAIQTNARNGQVVGALAVKESDELMLVSNGGTLIRIAVQGI 803 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 R GRN+ GVR I LA +Q+ +A++ ADA + C Sbjct: 804 R-RTGRNAQGVRLIQLAPDEQLAGLALI--ADAQEEAGQC 840 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 5/106 (4%) Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q++ V+ G K+T ++ S +GI A ++ + LVAV + + +L + Sbjct: 635 QYVCMVTAHGVVKKTPLMEY--SRPRSQGINAINLDPGDR---LVAVCLSDGQREFMLFT 689 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 KG +R P +++R R +GV S D+RV+S + + +++ Sbjct: 690 RKGMAVRFPEDKVRPMGRTARGVRGISLDADDRVISAQIVDPDQVI 735 >gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107] gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107] Length = 883 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/739 (50%), Positives = 508/739 (68%), Gaps = 15/739 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH L+ DL K+TVDF PNYDG+ Q P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEVV GC+A++DNPDI +D LME I GPDFPTGA+I GR GI AY TGRG +V+R Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAIINGRAGIVEAYRTGRGRVVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + RE I+VTEIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G R+VI Sbjct: 246 AEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+K+ S DV+LN L+ T LQ+ F VNMVAL+ +P+ L +L+AF+ R EVV RR Sbjct: 306 EVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQPKLLNLKDMLEAFIRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P A+ L R W A + ++ Sbjct: 366 TVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLE 425 Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D++ Y + DG YLS Q +AIL+LRL RLTG+ D + E + E Sbjct: 426 RAGDNACRPEDLEGNYGV-IDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKE 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L+IL + RL+ +I+ EL V + RRT I+ LD+ ED I ED VVT+S Sbjct: 485 IAEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDLIAVEDRVVTIS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL+ Y+AQRRGG G+S ++DEDFV L I STH ++L F+S+G VY KV Sbjct: 545 HGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKVYSLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P Q+RG+ ++N+L L +GERIT+I+P +S N+ ++ AT+ G V++ L+ Sbjct: 605 YMIPEAGRQSRGRPVVNLLPLEEGERITSILPV---KSYDNDHFIFMATRKGTVKKTVLT 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F + +GK A++LD D ++ D++L + G+ RF S +R GR+S G Sbjct: 662 EFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAM-GRSSRG 720 Query: 724 VRGISLAKGDQVISMAIVL 742 VRGI +A+G ++ M I L Sbjct: 721 VRGIRIAEGQFIVGMVIPL 739 Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust. Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 23/249 (9%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 VV + G + L+D+ R G K A + D + + + + IL T +G+ Sbjct: 540 VVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKV 599 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH----- 757 + I AGR S G V + L +G+++ S+ V D D+ + K Sbjct: 600 YSLKVYMIPE-AGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFIFMATRKGTVKKT 658 Query: 758 -MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 ++ + L + I + D+ V ++ C ++ S G R Sbjct: 659 VLTEFQSLRANGKRAIELDEGDTLVGTAVTNGACD--------VILFSSSGKAARFRESQ 710 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 R RS +G+R +++ I +V P+ Q++ VS+ G R PV+E R Sbjct: 711 VRAMGRSSRGVRGIRIAEGQFIVGMV--IPLAGG-QVLTVSENGYGKRTPVDEFPAKGRG 767 Query: 877 TKGVVIFST 885 ++GV+ T Sbjct: 768 SQGVIGMQT 776 >gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] Length = 860 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 562/902 (62%), Gaps = 76/902 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + +I+ +P P A++ELM RSW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II +EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E E Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEI 842 Query: 907 ES 908 +S Sbjct: 843 DS 844 >gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616] gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] Length = 867 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/901 (43%), Positives = 564/901 (62%), Gaps = 76/901 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G QVI++ L++G Sbjct: 727 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+ Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852 Query: 901 E 901 E Sbjct: 853 E 853 >gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] Length = 889 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/901 (43%), Positives = 564/901 (62%), Gaps = 76/901 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 33 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 92 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 93 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 152 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 213 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 392 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 452 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 453 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVV Sbjct: 513 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 632 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ Sbjct: 633 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 689 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 690 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G QVI++ L++G Sbjct: 749 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 771 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 772 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 814 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+ Sbjct: 815 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 874 Query: 901 E 901 E Sbjct: 875 E 875 >gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815] gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815] Length = 859 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/895 (43%), Positives = 560/895 (62%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF+PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL E+VD C Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +VI Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVI 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+D+ + II+ +P P A++ELM RSW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATSGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + +Y + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL ++K E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSHSG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ E+D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQSVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ +++I E+E Sbjct: 783 VDPEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 104/217 (47%), Gaps = 18/217 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V + LG VK+ PL + R KG V + D D++ I V+ FS G Sbjct: 638 FVFMATALGTVKKTPLEAF--SRPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGK 695 Query: 598 V--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 + E R P+G +ARG + + L G+ + ++ +++ S V+ AT++G Sbjct: 696 AVRFDENDVR-PMGR-EARG---VRGMQLEDGQSVIALLVAGDEQQS-----VLTATENG 745 Query: 656 NVRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISA 712 +R ++++ + R G IA++ R+ ++++ E I+L T G +R +S Sbjct: 746 YGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITNTGVLIRTRVSE 805 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 IR GR + GV ISL +G ++ + + A+AD D Sbjct: 806 IREM-GRATQGVTLISLDEGTKLSGLQQIAEAEADVD 841 >gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 902 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/909 (43%), Positives = 567/909 (62%), Gaps = 62/909 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Sbjct: 2 EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA R Sbjct: 62 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRLRKIAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV C+ V+ NP+ +D L+EII PDFPT +I G ++ Y TGRG +V Sbjct: 182 IPPHNLDEVVTACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQRVREGYRTGRGRVV 241 Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E G R+ I+V E+PYQVNK +LE+IAELV EK++ I+DLRDESD+ G Sbjct: 242 MRAKTHFEDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KARDR H L GLA+A+AN+DE + II+ + NP A++ELM ++W++S ++ Sbjct: 362 VTRRTIFELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVR 421 Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 +++ + + Y + + G LS+ Q + IL++RL RLTGL +D I Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528 NE + EI + LD+L+ R+ +I+ EL V+ E DT RR+ I ++ Sbjct: 482 VNEYKEVMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELF 541 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED I +D+VVT+S+ GY+K PLS YRAQ+RGG+G+ ++ED++ LF+ +TH + Sbjct: 542 TEDLITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDT 601 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 +L FS G +Y KVW +P GS +RGK ++N+ L +GE+IT I+P + +N YV Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPI---KGYQDNQYV 658 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 AT G V++ +LSDF ++G IA+ L+ D ++ ++D++L + G+ VRF Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + +R GR + GVRG++L +G QVI+M + + + Sbjct: 719 DENDVRPM-GRTARGVRGMNLGEGHQVIAMLVA----------------PAEAAEGVEAA 761 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + + SSV LT +E G+GKRT ++ R KG+ Sbjct: 762 VVDANGIAIPSSV-------------------LTATENGYGKRTPITEYTRHGRGTKGMI 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A S+ N G +VA V+ DQI+L++ G L+R V+EIR RAT+GV + + + Sbjct: 803 AIQTSERN--GKVVAAALVSPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860 Query: 889 ERVVSVERI 897 R+ ++RI Sbjct: 861 TRLSGLQRI 869 >gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 844 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/899 (44%), Positives = 565/899 (62%), Gaps = 74/899 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I E+ +SYL YA++VI+GRA+PD+RDG KPVHRR+L+ M +G +WNK Y K Sbjct: 6 KEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L DL KDTV+F PNYD + Q P V+ + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+ C+A ID+ +I ++ LM+ + GPDFPT +I G GI+ AY TGRG I IR Sbjct: 186 NISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRIYIRAK 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 ++IE + SG R+ I+V EIPYQVNK ++EKIAELV+EKR+ I+ LRDESD++G R++ Sbjct: 246 ANIEVDEKSG-RQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRIL 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A A+VILNQLY T LQ F +NMVAL+ +P+ TL IL+AF+ R EVV R Sbjct: 305 IELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KARDRAH+L LA+A+AN+D ++++IR + NP A+ L+ ++W + ++ Sbjct: 365 RTLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSML 424 Query: 432 DLIDD-----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 D + D + + I +G + +E Q +AIL+LRL +LTGL D++ NE L Sbjct: 425 DCVGDEKDIARPEWLEARFGI-HNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKEL 483 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E ILS RLL +I++E LS+K + PRRT I D+ ED I +ED+VV Sbjct: 484 LNAIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQEDVVV 543 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+K PLS Y AQ RGGKG+S +DEDF+ L + +TH ++L FSS G +Y Sbjct: 544 TLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGRLYW 603 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP S +RG+ ++N+L LN ERIT I+P E+ YV AT G V++ Sbjct: 604 LKVYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYETGQ---YVFMATACGVVKKI 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + +G + LD DE++ V+ N+++L + G+ +RF +R GR Sbjct: 661 ALLEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAM-GRT 719 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI LA+ D+V+S+ I+ D D Sbjct: 720 ARGVGGIRLAQEDRVVSL-IIPRGDGD--------------------------------- 745 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILTV+ G+GK+TS ++ +R+G G+ + V+ N G Sbjct: 746 -------------------ILTVTANGYGKKTSKEEYPTRSRNGMGVISIKVNGRN--GN 784 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +V V++ND +++++D GTL+R +E+ SR TKGV + T +E+VV ++R+ E Sbjct: 785 VVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEKVVGLQRLVE 843 >gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] Length = 886 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 560/907 (61%), Gaps = 69/907 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF PNYDG+ P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+IDNP+I +D LME I GPDFPTGA+I GR GI AY TGRG I +R Sbjct: 186 NLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAIINGRAGILQAYRTGRGRIYVRAQ 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E RE IV+ EIPYQVNKA ++EKIAELV+EK+I I+++RDESD+ G RVV+ Sbjct: 246 AEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVV 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +V+LN LY T LQ++F +N+VAL +P+ L +L+ FV R EVV RR Sbjct: 306 EIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLNLKELLEYFVKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R HVL G A+A+AN+DEV+ +I+ SP P AR ++ R W + + +D Sbjct: 366 TVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLD 425 Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +++ + + DG+ YLS VQ +AIL+LRL RLTG+ D + E I+ Sbjct: 426 RAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQ 485 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I L+IL + RL+ +I++EL + ++ RRT I + + D+ ED I ED VVT+S Sbjct: 486 IAGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTIS 545 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY K PL Y+AQRRGG G++ ++DEDFV L I +TH +L F+S+G V+ KV Sbjct: 546 HGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKVFWLKV 605 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P+ Q+RG+ ++N+L L +GERIT+I+P E + ++ ++ AT G V++ LS Sbjct: 606 YQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFD---DDHFIFMATADGTVKKTPLS 662 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + G A+ L D ++ DI+L T G+ RF +R GR S G Sbjct: 663 QFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSM-GRVSRG 721 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ +A VI+M Sbjct: 722 VRGVRMADDVSVIAMV-------------------------------------------- 737 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + EE + L + E GFGKRT ++ R +G+ A +S+ N G LV Sbjct: 738 -VPEEGGKVLTVSEN--------GFGKRTEVTEYPAKGRGSQGVIAMQMSERN--GCLVG 786 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V + D+I+L+S++GTL+R +E+ ++ R T+GV + + E +V +ERI E + Sbjct: 787 ATQVFEGDEIMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGEHIVGLERIDEPPVP 846 Query: 904 DEAESTE 910 + E E Sbjct: 847 EAVEGGE 853 >gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] Length = 922 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/940 (43%), Positives = 562/940 (59%), Gaps = 112/940 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG- 252 NL EV+DGC+A++DN ++ +D LM+ I GPDFPT +I GR GI AY TGRG I +R Sbjct: 186 NLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYVRAR 245 Query: 253 --VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 V I+K G R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G RV Sbjct: 246 VEVEDIDKVGG-RQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+RG +V+LN LY T +QS+F +N+VAL +P+ L +L+ FV R EVV Sbjct: 305 VIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ + Sbjct: 365 RRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVEAM 424 Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ D+ Y + DG YLS Q +AILELRL RLTGL + + E + Sbjct: 425 VERAGADSCRPEGLDAQYGL-RDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEIL 483 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E + IL++ RL+ +I++EL VK E RRT I+ D+ D I E+ VVT Sbjct: 484 ALIGELIRILTNPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVVT 543 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PL+ Y AQRRGGKG+S ++DED+V L + ++H ++L FSS G VY Sbjct: 544 ISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYWL 603 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------------EDE------- 640 + + +P S ARG+ L+N+L L++GERIT ++ +DE Sbjct: 604 RTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIEGE 663 Query: 641 ---------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 + ++ AT G V++ L F + +G IA+KL+ Sbjct: 664 ATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKLE 723 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 D +++ +++L + G+ +RF S +R GR + GVRG+ L K Q+ISM Sbjct: 724 EGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQQLISML 782 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 I E Q Sbjct: 783 ---------------------------------------------IPESGAQ-------- 789 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ILT SE+GFGKRT F R G+G+ A S+ N G LV V D ++I+L+SD+ Sbjct: 790 ILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISDQ 847 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 GTL+R V+E+ + R T+GV + AKDE +V +ER++E Sbjct: 848 GTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQE 887 >gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] Length = 867 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 564/901 (62%), Gaps = 76/901 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATN+P HNL EV Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++NPD +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAEAE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVV Sbjct: 491 MAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ Sbjct: 611 IKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L +G QVI++ L++G Sbjct: 727 ARGVRGMQLDEGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+ Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852 Query: 901 E 901 E Sbjct: 853 E 853 >gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/902 (43%), Positives = 571/902 (63%), Gaps = 67/902 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H LL D+ K+TVDF PNYDGS +EP++L A+ PN+L+NG GIAVGMATNIP H Sbjct: 126 RMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+ +++NPD D++ L+ +++ PDFPT A+I G +G+ + Y TGRG +V+R Sbjct: 186 NLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAALIYGLSGVHDGYRTGRGRVVMRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G+R+ I+V E+PYQVNK +LE+IAELV EK+I I+++RDESD+ G RVVI Sbjct: 246 THFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN L++ T LQ F +NMVAL KP L +L F++ R EV+ RR Sbjct: 306 ELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLDCFLSHRREVITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+R LM+R+W+++ +++++ Sbjct: 366 TVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVEEMLA 425 Query: 433 LIDDSSYTIGSDGTMY--------LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 +SY S + LS+ Q +AILELRL RLTGL +D I E + I Sbjct: 426 RALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREVMDVI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL++ R+ II +EL +++ + D PRR+ IV ++ ED I EDMVVT+SH Sbjct: 486 TDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIEDLIAPEDMVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY KR PL+ YRAQRRGG+G+ M+D+DF+ LF+ +TH +L FSS G VY KV+ Sbjct: 546 AGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P G+ +RG+ ++N+ L +GE+I ++P ++ ++ +V AT G V++ L+ Sbjct: 606 EVPEGTRNSRGRPIVNLFPLMEGEKINAVLPV---QAFDDDHFVFMATAEGTVKKTALTA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++G IA LD D ++ V +D++L + G+ VRFP +R GR + GV Sbjct: 663 FSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRPM-GREARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG++L +G +VI+M + Sbjct: 722 RGMNLEEGQRVIAMLVA------------------------------------------- 738 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 K +E +LT +E G+GKRT ++ R KG+ A S N G LV Sbjct: 739 ---------KDEELSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GKLVGA 787 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V ++D+++L+S G LIR V +IR RAT+GV + + + + +E++ ESE+ + Sbjct: 788 CLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEGTSLAGIEKVAESEVDE 847 Query: 905 EA 906 A Sbjct: 848 PA 849 >gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] Length = 867 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 563/914 (61%), Gaps = 80/914 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNPGATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ LM+RSW++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVREMLARAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL SVK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + +V AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--- 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEA 852 Query: 898 -RESEIVDEAESTE 910 VDEA E Sbjct: 853 EEGEGEVDEASDGE 866 >gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003] gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003] Length = 862 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/895 (43%), Positives = 557/895 (62%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NPD +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837 >gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565] gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565] Length = 915 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/942 (43%), Positives = 573/942 (60%), Gaps = 124/942 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V+GC+A+I+N D+ +D LM I GPDFPTG +I GR+GI AY TGRGSI +R + Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKAE 247 Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + EKTS RE I+V EIPYQVNKA ++EKIAELV+EK+I I+ LRDESD+ G R+VI Sbjct: 248 VEVDEKTS--RETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S +++LN LY++T +Q+ F +NMVAL+ +P+ L IL AF+ R EVV RR Sbjct: 306 EIKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ L+ + W ++ +++ Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425 Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D + + I +G +L+E Q +AIL+LRL +LTGL + I E SL Sbjct: 426 KAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDL 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S +RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+S Sbjct: 485 IAELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK PLS Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV Sbjct: 545 HQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARG+ +IN+L L +GERIT I+P E ++ YV FAT +G V++ LS Sbjct: 605 YQLPEASRGARGRPIINLLPLEEGERITAILPVKEYDAEK---YVFFATANGTVKKTSLS 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------ 717 DF + SG A+ L DE++ V+ N+I+L + G+ VRF + R A Sbjct: 662 DFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDV 721 Query: 718 -------------------------------GRNSVGVRGISLAKGDQVISM-------A 739 GR + GVRGI L GD+V+S+ A Sbjct: 722 ETDDDAGNDDDGSDNGEGTESKGTFKGVRPMGRTAAGVRGIKLGAGDKVVSLIVPRGEGA 781 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 I+ + Y +R ++ + R +G IS Sbjct: 782 ILTATENGYGKRTALAEYPTKSR-----------------GTQGVIS------------- 811 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++ R+GK I A V D DQI+L+++ Sbjct: 812 -----------------IKVDERNGKVIDA---------------IQVEDTDQIMLITNG 839 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 GTL+R V E+ + R T GV + T +DE VV ++RI ES+ Sbjct: 840 GTLVRTRVAEVSVIGRNTGGVRLIRTGEDETVVGLQRIAESD 881 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/146 (23%), Positives = 75/146 (51%), Gaps = 10/146 (6%) Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P R A + + L G+++ +++ P E + ++ AT++G +R L+++ +R Sbjct: 751 PMGRTAAGVRGIKLGAGDKVVSLI-VPRGEGA-----ILTATENGYGKRTALAEYPTKSR 804 Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G I++K+D R+ +++ + I+L T G VR ++ + V GRN+ GVR I Sbjct: 805 GTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGTLVRTRVAEVSVI-GRNTGGVRLI 863 Query: 728 SLAKGDQVISMAIVLHADADYDERIC 753 + + V+ + + +D D ++ + Sbjct: 864 RTGEDETVVGLQRIAESDEDENDALA 889 >gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49] Length = 851 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/895 (43%), Positives = 558/895 (62%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI++ L++G Sbjct: 717 MQLEDGQQVIAL-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+E Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837 >gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001] gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001] Length = 862 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/901 (43%), Positives = 559/901 (62%), Gaps = 76/901 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E + Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDV 842 Query: 907 E 907 E Sbjct: 843 E 843 >gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718] gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC 19718] Length = 848 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/903 (43%), Positives = 572/903 (63%), Gaps = 69/903 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Sbjct: 2 EQFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+D C+ ++ +PD+D+ LM I PDFPT +I G +GIK+ Y TGRG ++ Sbjct: 182 IPPHNLGEVIDACLLLLRDPDVDIAELMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241 Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R +H E+ G+R I++ E+PYQVNKA +L +I ELVR+KRI I+DLRDESD+ G Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRG +V+LN LY+ T +Q F +NMVAL +P L +L F+ R EV Sbjct: 302 RVVIELKRGEVPEVVLNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDHFLRHRREV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A++ LM R+W +S ++ Sbjct: 362 VTRRTLFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVE 421 Query: 429 DLI--DLIDDSSY---TIG-----SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +++ +ID + + T+ SD LS+ Q +AIL+LRL RLTGL ++ I +E Sbjct: 422 EMLLRAMIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYR 481 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + +I++ LDIL++ R+ II +EL ++K + PRR+ +V ++ ED I DM Sbjct: 482 EILDKIRDLLDILANPERITTIIVEELTAIKGQFGDPRRSEVVIDAQNLNTEDLITPADM 541 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K L YRAQ+RGG+G+ + R++DF+ +LFI +TH +L FSSLG V Sbjct: 542 VVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+ +P GS +RG+ + N++ L Q E+I ++P +S + YV +T G V+ Sbjct: 602 YWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPV---KSFDDTRYVFMSTAGGTVK 658 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LS+F + +G IA+ LD D ++ V ++D++L + G+ +RF + +R G Sbjct: 659 KTPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 RN+ GVRG+ L G QVIS L+ D E + L Sbjct: 718 RNARGVRGMKLGAGQQVIS--------------------------LLVADNENMAVL--- 748 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 T +E G+GKRT ++ NR +G+ A + + N Sbjct: 749 -----------------------TATENGYGKRTPITEYTRHNRGTQGMIAINTNVRN-- 783 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +VA V +D+I+L++ G +IR V+EIR RAT+GV + + E++ +ERI Sbjct: 784 GKVVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGEKLAGLERIV 843 Query: 899 ESE 901 E++ Sbjct: 844 ETD 846 >gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 861 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/907 (44%), Positives = 575/907 (63%), Gaps = 71/907 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+EH + + + V+I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSEHT-ENPTHFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV Sbjct: 60 EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K +H LL DL K+TVDF NYDGS EP+VL R PN+L NG Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSS 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV++ C+ IDN DI +D L+EI+ GPDFPT +I G +GI+ A Sbjct: 180 GIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGIINGASGIRQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TG+G I +R V HIE D++ IVVTE+PYQVNKA ++ KIA+LV++KRI I LR Sbjct: 240 YETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G R+VIEL+RG +V+LN LY+ T +Q++F +NMVA++ P+ TL IL+A Sbjct: 300 DESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKGMPKLMTLKNILEA 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+A R +VV RR+ + LNKAR+ AH+L GLA+A+ N+D+++ +I+ + N A+ L+ + Sbjct: 360 FIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAK 419 Query: 421 SWNASDIKDLI---DLI----DDSSYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRD 471 +W S IK+LI D++ +D +G DG LS+ Q +AIL+L+L RLTGL ++ Sbjct: 420 TWQGSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKN 479 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I +E N L IK LDIL + RL+ +I++EL+ ++ R T+I+E +D+ ED Sbjct: 480 KIFDEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLED 539 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I +E VVT+SH GYVK LS Y+AQRRGGKG+ ++DEDFV LFI ++H +VL Sbjct: 540 LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLC 599 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVF 650 FSSLG VY KV+ LP+ S ARGK ++N+L L + E I I+ + DE N +V Sbjct: 600 FSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDE----NHFVFM 655 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 T G ++ L++F + + G IA++L D+++ VE + E+DI+L + G+ +RF Sbjct: 656 VTSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKE 715 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S +RV GR ++GVRGI LA D+V+S+ +V + D Sbjct: 716 SDVRV-VGRTAIGVRGIKLANADKVVSLIVV------------------------NQDNP 750 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +T+ + ++E R Q R G G+ + Sbjct: 751 ILTTTEKGFGKRTRLNEYRSQA-----------------------------RGGLGVISI 781 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S N G +V + D D+++L+S+KGTL+R ++ I R T+GV + + K E+ Sbjct: 782 KTSDRN--GKVVGAIQITDEDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEK 839 Query: 891 VVSVERI 897 +VS+ +I Sbjct: 840 LVSIAKI 846 >gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1] Length = 868 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/895 (44%), Positives = 557/895 (62%), Gaps = 67/895 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G NK Y K Sbjct: 6 KEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR LL++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEA 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + H L+ D+ K+TVDF+PNYD EP V+ R+PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+G +A+ID P++D+DALM+ I GPDFPT +I G GI+ AY TGRG + IR Sbjct: 186 NLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGIINGVGGIQLAYRTGRGRVRIRAK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE RE I+VTEIPYQVNKA ++EKIAELV+EK+I I++LRDESD+ G R+ IE Sbjct: 246 ADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 +KRG SA+V+LN LY+ T L+S+F +NMVAL +P+ L IL+AF+ R EVV RRT Sbjct: 306 VKRGESAEVVLNNLYQQTQLESVFGINMVALVDGRPQLVNLKQILEAFLRHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ A+ ++ R+W + L+ Sbjct: 366 IFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAA 425 Query: 434 I-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 DD +G +G L+EVQ + ILE+RL RLTGL ++ + E L I+ Sbjct: 426 TGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIR 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 ++IL LL +I+ EL +K E RR+ I D++ D I ED+VVT+SH Sbjct: 486 ALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHA 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR P+S YRAQ+RGG+GRS +DEDF+ L++V+TH ++L F+S G V+ V + Sbjct: 546 GYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFWLPVHQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP ARG+ +IN + L +GE++ ++P E + +V FAT++G V++ L++F Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGF---FVFFATRNGTVKKTPLTEF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 GKIA+ LD D ++ V D++L G+ VRF S +R GR + GVR Sbjct: 663 AFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAM-GRTATGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+G++V+S+ + D + D Sbjct: 722 GIRLAEGEEVVSLVV---PDGEGD------------------------------------ 742 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ILT SE+G+GKRT ++ R +G+ A S+ N G LV Sbjct: 743 --------------ILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERN--GRLVGAI 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ +++L+SD GTL+R +EI R T+GV + + E + +VER+ S Sbjct: 787 QLSEQHEVLLISDGGTLVRTRASEISQVGRNTQGVTLIRLGEGESLQAVERVDAS 841 >gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] Length = 871 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/907 (44%), Positives = 564/907 (62%), Gaps = 74/907 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDG+ Q PVVL R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A+I++ DI +D LM + GPDFPTGA+I GR GI AY TGRG I +R + Sbjct: 188 REVVNACLALINDSDITIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRAKAE 247 Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + EKT R+ I++ EIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G RVVI Sbjct: 248 VITDEKTG--RDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL++G DV+LN LY TSLQ++F +NMVAL +P L IL+AF+ R EVV RR Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T YLL KAR+R HVL GLAIA+AN+D V+ +++ SP+P AR L+ +SW ++ +++ Sbjct: 366 TLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D+ G DG LS Q +AIL+LRL RLTGL + + E IEI Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLIEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + +DIL RLL +I++EL + E RRT I + D+ ED I ED VVT+SH Sbjct: 486 ADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL+ Y+ QRRGG G++ + ++DEDFV L I +TH ++L FS+ G VY KV+ Sbjct: 546 GGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWIKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ +RG+ ++N+L L++GER+T+I+P E ++ ++ AT +G V++ L+ Sbjct: 606 QIPVAGRASRGRPMVNLLQLDEGERVTSILPL---EEHTDDRFIFMATANGYVKKTDLAS 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F +G A+ L D ++ D++L + G+ RF SA+R GR S GV Sbjct: 663 FAP-RSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPM-GRASRGV 720 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI +++ R+IS + T Sbjct: 721 RGI-----------------------------NLAEGHRMISLLVPDATGT--------- 742 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +LTVSE G+GKRT+ DF R GKG+ A S+ N G LV Sbjct: 743 ---------------VLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN--GRLVGA 785 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI-V 903 V D+++L+S++GTL+R +++ R T+GV I T + E +V ERI ESE + Sbjct: 786 LQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRAERIVESEASL 845 Query: 904 DEAESTE 910 + E+TE Sbjct: 846 ESPEATE 852 >gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] Length = 871 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/924 (42%), Positives = 565/924 (61%), Gaps = 88/924 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M WN+ +VK Sbjct: 6 KETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD AA RYTEC Sbjct: 66 CARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEC 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A LL DL K+TVDF PNYDG +EP VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 N+ EV+DG + V+ N + +D L+EII PDFPTG +I G +G+++ Y TGRG +V+R Sbjct: 186 NITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVVMRAK 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ + R I+V E+PYQVNK ++LE+IAELVR+K++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F++ R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ + II+ +P P A+ +LM R+W++S +++++ Sbjct: 366 TIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + Y I DG LS+ Q + IL++RL RLTGL +D I NE Sbjct: 426 RTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCI 533 + +I + LDIL+ R+ II EL K+E RR+ I D+ ED I Sbjct: 486 KEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIELNATDLGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +DMVVT+SH GY+K P++ YRAQ+RGG+G+ + +++D++ LFI +TH +L FS Sbjct: 546 TPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646 + G +Y KVW +P GS +RGK ++N+ L GE+IT I+P FPED Sbjct: 606 NRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDR------ 659 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+ +T G V++ LSDF ++G IA+ LD D ++ ++D++L + G+ V Sbjct: 660 YIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAV 719 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF + +R GR + GVRG++L +G QVI++ Sbjct: 720 RFDENDVRPM-GRTARGVRGMNLEEGQQVIALL--------------------------- 751 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 ++E Q + LT +E GFGKRT ++ R KG Sbjct: 752 ------------------VAENEQQSV-------LTATENGFGKRTPITEYTRHGRGTKG 786 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A S+ N G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + Sbjct: 787 MIAIQTSERN--GKVVAATLVDAADEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVE 844 Query: 887 KDERVVSVERIRESEIVDEAESTE 910 ++ ++RI ES+I ++ E Sbjct: 845 DGTKLSGLQRILESDIEEDQSGAE 868 >gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] Length = 867 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL SVK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + ++ AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160] gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160] Length = 860 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/902 (43%), Positives = 561/902 (62%), Gaps = 76/902 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + +I+ +P P A++ELM R+W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+IT ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E E Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEN 842 Query: 907 ES 908 +S Sbjct: 843 DS 844 >gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112] gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG] gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548] gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112] gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548] gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG] Length = 868 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 566/898 (63%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS + L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] Length = 866 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/891 (43%), Positives = 555/891 (62%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + SDG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II +EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ +INI L +GE+IT ++P E + + +V T G V++ L F Sbjct: 601 PQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFSA---DKFVFMGTALGTVKKTPLEAFG 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++ R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G VI++ L++GD Sbjct: 717 MQLEDGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ QI+L+++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 783 VDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833 >gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315] gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315] Length = 867 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/897 (43%), Positives = 558/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL +VK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + ++ AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] Length = 867 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/897 (43%), Positives = 556/897 (61%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++N D +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNADATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S ++D++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849 >gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp. novicida GA99-3549] gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549] Length = 868 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 566/898 (63%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS + L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQGDVED 848 >gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu] Length = 851 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/895 (43%), Positives = 557/895 (62%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F+A R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLAHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442 HVL GLA+A+AN+DE + II+ +P P A++ELM ++W++S +++++ + + T G Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATAGG 420 Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDILS R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHSG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M L++G Sbjct: 717 MQLEDGQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I E+E Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAE 837 >gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] Length = 858 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/910 (44%), Positives = 567/910 (62%), Gaps = 69/910 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R++K AH +L DL K+TVDF NYDG+ + P VL R PN+L+NG GIAVGMATNI Sbjct: 123 TEIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ EVV C+A+++NP+I +D LME I GPDFPTGA+I GR GI AY TGRG I + Sbjct: 183 PPHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIISGRAGILQAYRTGRGRIYV 242 Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R + I + +R+ I++ EIPYQ+NKA ++E+IAELV+EK+I I++LRDESD+ G R Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRG DV+LN LY T LQS+F +NMVAL +P+ L I+ AF+ R EVV Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQPKVMNLKEIIDAFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT YLL KAR+R H+L GLAIA+AN+D ++ +I+ SP+P AR L+ + W+ D+ Sbjct: 363 TRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVA 422 Query: 430 LIDLI-DDSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ +D+ G DG LS Q +AILELRL RLTGL + + NE Sbjct: 423 MLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKL 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI + L IL RL +I++EL V +E R T IV+ D+ ED I ED VVT Sbjct: 483 KEIADYLHILGDSDRLKQVIREELEEVVEEFGDERLTEIVDSQHDLSVEDLITPEDRVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K PLS Y+AQRRGG G+S ++DEDFV L + STH+++L F++LG VY Sbjct: 543 ISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+++P+ Q+RG+ ++N+L L+ GER+T+I+P E + Y+ AT G V++ Sbjct: 603 KVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAE---YTEDHYIFMATAKGIVKKTA 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+DF + G A++L D ++ E+D++L + G+ VRF +R GR + Sbjct: 660 LTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPM-GRTA 718 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI + D++I A+++ + Y Sbjct: 719 RGVRGIRMGDEDEMI--ALIIPQEGSY--------------------------------- 743 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +LT S G+GK+T + +F R KG+ A + N G L Sbjct: 744 ------------------VLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRN--GPL 783 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900 V V + D+++L+S++GT++R V+EI R T+GV + + E +V + +I ES Sbjct: 784 VGAVQVGEADELMLISNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESD 843 Query: 901 EIVDEAESTE 910 E+ EAE+ E Sbjct: 844 ELPSEAEAAE 853 >gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] Length = 868 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis WY96-3418] gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 868 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] Length = 829 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/904 (43%), Positives = 566/904 (62%), Gaps = 87/904 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE I S+++ +++I+ E++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M Sbjct: 1 MTEPSIESNQQ-----PTIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAM 55 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G +N+ Y+K ARI G+V+GKYHPHG+ A YD L RMAQD+S+R L++GQGNFGS+ Sbjct: 56 RELGNTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSM 115 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ + L+ DL K+TVDF PNYD S QEP VL +R PN+L+NG Sbjct: 116 DGDSAAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSE 175 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT IP HNL EV++G +A++DNP+I + LMEII GPDFPTG I GR GI+ A Sbjct: 176 GIAVGMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGGFICGRAGIREA 235 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG IV+R +HIE+ E IV+TEIP+Q NKAA++EKIA L++EKRI IA++R Sbjct: 236 YETGRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G RVV++L++ D+++NQLY+ T LQ F + ++ + KPE L IL+ Sbjct: 296 DESDRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIVNNKPEILNLKQILQH 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+A R+ VV RRT + L KA +RAH+L GL IA+ +LDEVV +IR S NP A+ L+ R Sbjct: 356 FLAHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILR 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q + IL++RL RLTGL RD I ++ N + Sbjct: 416 --------------------------FELSEIQAQTILDMRLQRLTGLERDKIISDYNEI 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I +L+ + ++ II++E +++E RRT I++ ++ ED I E+MVV Sbjct: 450 QAKISWLKQVLADDNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 TVSH GY+KR PL++YRAQRRGGKG G+V ++DFVT L+ S+ + LFF++ G V+ Sbjct: 510 TVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ LP+ ARGKA++N+L L + E++ I+P + + + + V+ TK G V++ Sbjct: 570 RKVYELPLAGRTARGKAIVNLLELGEDEKVAAILPVADLANMDDTVSVLTVTKQGRVKKT 629 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +S++ + R GK + + DEILS + +++I L TK G + F S +R GR Sbjct: 630 FISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAM-GRL 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+GI+L D+V+ +A+ LK+D+S Sbjct: 689 AAGVKGITLGDDDEVVGVAV----------------------------------LKSDAS 714 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILTV+E G+GKRT+ ++++ +R GKG+ S+ N G Sbjct: 715 -------------------ILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTSERN--GN 753 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V PV D DQ++LV++ G +IR+P++ +RI R T+GV + + + E VV + + Sbjct: 754 VVGVLPVVDEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDEGELVVDMSMLARE 813 Query: 901 EIVD 904 E VD Sbjct: 814 EGVD 817 >gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 847 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/897 (43%), Positives = 572/897 (63%), Gaps = 72/897 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 9 KILIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKK 68 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPH + A+YDA+ RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 69 SARIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 128 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL KDTV++ PNYD + Q P V+ R PN+L+NG GIAVGMATNIP H Sbjct: 129 RMSKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPH 188 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI--R 251 NL E++DGC+A ID+ I ++ LM+ I GPDFPT A+I G+ GI+ AY TGRG I I R Sbjct: 189 NLFEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAIINGKQGIEEAYRTGRGKICIRAR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +E +G RE IVV+EIPYQVNKA ++EKIA+L++EKRI I+ LRDESD+ G R++ Sbjct: 249 AIVEVEANTG-REIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRII 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I +KR A A+V+LN LY T LQ FS+NMVALN +P+ F+L IL AF+ R++++ R Sbjct: 308 IGIKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQPKIFSLKEILSAFICHRQDIITR 367 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI---- 427 RT + L KAR+R H+L L +A AN++ ++ + R + P A+ +L+ +WN I Sbjct: 368 RTIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQ 427 Query: 428 -KDLIDLID----DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +++ ++ + Y I DG YL+E Q +AIL+LRL LT L + E L Sbjct: 428 CREVHHMVRPEWLEEKYGI-HDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLT 486 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + L IL+ RL+ +I++EL ++ + PRRT I ++ ED I +E++VVT+ Sbjct: 487 KIVDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTL 546 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S+ GYVK PL+ Y AQ+RGGKG+S V M++EDF+ L + +TH ++L FSS G +Y K Sbjct: 547 SYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMYWMK 606 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP S +RG+ ++N+L L ERITTI+P + E N V AT G V++ L Sbjct: 607 VYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCN---VFMATASGTVKKTAL 663 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 F + +G IA+ L DE++ V N+++L + G+ VRFP + +R GR + Sbjct: 664 IAFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRSM-GRTAT 722 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI+LA+GD+V+S+ I +++ Sbjct: 723 GVRGINLAEGDRVVSLII--------------------------------------PNID 744 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G+ ILTV++ G+GKRT+ ++ +R+ +G+ + S+ N G ++ Sbjct: 745 GH---------------ILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERN--GQVI 787 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+++DQI+L++D GTL+R V+E+ I R T+G+ + TA++E VV ++RI E Sbjct: 788 GAIQVDEHDQIMLITDAGTLVRTRVSEVSIVGRNTQGITLIRTAENEHVVGLQRIAE 844 >gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] Length = 867 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL SVK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + ++ AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI+M L++G Sbjct: 727 ARGVRGMQLEDGQQVIAM-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica OSU18] gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 868 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] Length = 869 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/906 (45%), Positives = 564/906 (62%), Gaps = 74/906 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 VSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQD+SLR LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K AH LL DL K+TVDF PNYDGS Q P VL R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 KKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV GC+A I+N DI +D LMEII GPDFPTGA I GR GI AY TGRG I +R +H Sbjct: 188 KEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATINGRAGIVQAYRTGRGRIYVRAKAH 247 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ ++E I++TEIPYQ+NKA ++E+IAELV+EK+I I++LRDES + RVVIEL Sbjct: 248 VERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKD-IRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG DVILN LY T ++ +F +N+VAL +P+ L +L+ FV R EVV RRT Sbjct: 307 KRGEIGDVILNNLYAQTQMEGVFGINVVALVDGQPKILNLKQLLECFVRHRREVVTRRTI 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P AR L+ R W ++ + ++ Sbjct: 367 YLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFLERA 426 Query: 435 D-DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D+ G D YLS Q +AILELRL RLTG+ D + +E I E Sbjct: 427 GADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVARIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L+IL S +RL+ +I++EL ++ RRT I D+ ED I ED VVT+SH G Sbjct: 487 FLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISHGG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y K LS Y+AQRRGG G++ ++DEDFV L I STH ++L F++ G VY KV+++ Sbjct: 547 YAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNAGKVYWLKVFQI 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF 665 P+ Q+RG+ +IN+L L++ ERIT+I+P E DE ++ AT +G V++ L+ F Sbjct: 607 PLAGRQSRGRPIINLLPLDESERITSILPVREYDEDH----FIFMATANGTVKKTPLTQF 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG A+ L+ + ++ +D++L + G+ VRF + +R GR S GVR Sbjct: 663 ARPRTSGLRAIDLEEDNHLVGTAVTDGNSDVMLFSSEGKAVRFNENDVRSM-GRTSRGVR 721 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA+G +VISM L + D + +T +N + Sbjct: 722 GIRLAEGYEVISMV------------------------LPTEDGKVLTVSENGYGKRTKV 757 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E + K + SE R+GK + A V VF Sbjct: 758 DEYATKGRAGKGMIAMQTSE----------------RNGKVVGA------------VQVF 789 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEI 902 D D+I+L+SD+GT++R V+E+ ++ R T+GV + E ++ VERI + EI Sbjct: 790 ---DGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVERIESIADDEI 846 Query: 903 VDEAES 908 VD AES Sbjct: 847 VDTAES 852 >gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis] gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50] Length = 877 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/899 (43%), Positives = 552/899 (61%), Gaps = 84/899 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K AH LL Sbjct: 61 YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EVVDGC+ Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDR 263 + NP+ +D L+E+I PDFPTG VI G TG++ Y TGRG +++R +H E G+R Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 + IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG +V+ Sbjct: 241 QAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +N+VAL +P L +++ F+ R EVV RRT + L KAR+R Sbjct: 301 LNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS----- 438 HVL GLA+A+AN+D+ + II+ +P P AR+ELM RSW++S +++++ +D + Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGGVA 420 Query: 439 ----------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 Y + DG LSE Q + IL +RL RLTGL +D I E + I + L Sbjct: 421 AFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLL 480 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 DIL+ R+ II +EL ++K E T RR I +++ ED I DMVVT+SH Sbjct: 481 DILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSH 540 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH +L FS+ G VY KVW Sbjct: 541 GGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVW 600 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +P G+ +RGK ++N+ L GE++T ++P F ED YV AT G V++ Sbjct: 601 EVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDH------YVFMATSRGTVKKTP 654 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R GRN+ Sbjct: 655 LSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPM-GRNA 713 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L +G VI++ L++GD Sbjct: 714 RGVRGMMLEEGQTVIAL-------------------------LVAGD------------- 735 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + Q +LT +E G+GKRT ++ R KG+ A S N G + Sbjct: 736 --------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRN--GRV 779 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V V +D+I+L++ G L+R V EIR RAT+GV + S + V R+ ES Sbjct: 780 VGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVES 838 >gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 868 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++++I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L +K Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] Length = 891 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/915 (42%), Positives = 558/915 (60%), Gaps = 84/915 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP +D L+EII PDFPTG +I G +G++ Y TGRG +++R +H E Sbjct: 191 VDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IV+ IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S ++D++ D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVRDMLSRADGD 430 Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + DG LS+ Q + IL +RL RLTGL +D I E + Sbjct: 431 TPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II EL ++K E T RR+ I +++ ED I DM Sbjct: 491 TIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITPTDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH +L FS+ G V Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RGK ++N+ L GE+IT ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDH------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG+ L + VI++ L++GD Sbjct: 725 M-GRNARGVRGMMLEETQTVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRT ++ R KG+ A + Sbjct: 752 --------------------ETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIAIQTTSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V VN D+I+L++ G L+R V EIR RAT+GV + + + V Sbjct: 792 N--GKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSTLSGVR 849 Query: 896 RIRESEIVDEAESTE 910 R+ ES+ D+ E E Sbjct: 850 RVVESDADDDGELDE 864 >gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] Length = 888 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/897 (43%), Positives = 553/897 (61%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 33 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 93 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYEL 392 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETE 452 Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + G DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 453 NAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL VK E RR++I ++ ED I +DMVV Sbjct: 513 MAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 632 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ Sbjct: 633 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKT 689 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L QVI+M L++G Sbjct: 749 ARGVRGMQLDDAQQVIAM-------------------------LVAGS------------ 771 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 772 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 814 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 815 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 871 >gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] Length = 839 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I E ++D Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818 Query: 905 EAEST 909 E+E T Sbjct: 819 ESEDT 823 >gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] Length = 833 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/890 (44%), Positives = 559/890 (62%), Gaps = 94/890 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV+I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G E+NK Y K AR+ Sbjct: 9 SVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGS+DGD AA RYTE R+ K Sbjct: 69 VGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYTEVRMAK 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +H LL D+ K+TVDF PNYD S EP+VL ++PN+LVNG GIAVGMAT IP HNLGE Sbjct: 129 LSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIPPHNLGE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V++G V++ID+P + + L++II GPDFPT ILG ++ AY TGRG I +R + +E Sbjct: 189 VINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMRAKAMVE 248 Query: 258 ---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +TS RE IV+ EIPYQVNKA ++EKIA L++EK+I I+DLRDESDR G R+VI+L Sbjct: 249 IDRRTS--RESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRIVIDL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LNQLY+ T++QS F + M+A+ G +P+ TL +L F+ R+E+V RR Sbjct: 307 KREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVTRRCV 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA RAH+L GL IA+ NLDE+++II+ S N + A+ L++R Sbjct: 367 FELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIER-------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S++Q +AIL++RL RLTGL RD I NE N + +I +IL S Sbjct: 413 ------------FTFSDIQAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L II+ EL+ VK+ D PRRT I+ D+ ED IV EDMVVTVSH GY+KR +S Sbjct: 461 VEILKIIRAELIEVKENYDDPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKRNAVS 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YR+QRRGGKG++G+ ++EDFV LFI STH+ +L F+ G VY KV +P G AR Sbjct: 521 LYRSQRRGGKGKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAAR 580 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 GKA++N+L L ER+ TI+P F ED+ Y++ ATK+G V++ +L + + Sbjct: 581 GKAIVNLLQLAPEERVMTILPVKEFVEDK------YIIAATKNGVVKKTELMAYANPRQG 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G I+M +D D +++ D+LL + G+ +RF + +R GR + GVRG+ L Sbjct: 635 GIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPM-GRTARGVRGMQLEG 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D +I M +V ND++ Sbjct: 694 DDTIIGMEVV-----------------------------------NDNTSAS-------- 710 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +++V+E G+GKRT+ ++R+ +RSGKGI S N G +V + V D + Sbjct: 711 --------LVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRN--GYVVDIKLVTDEE 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ ++D+G ++R V + I R T+GV + DER+V+V ++ E E Sbjct: 761 DLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKE 810 >gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2] Length = 894 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/909 (43%), Positives = 559/909 (61%), Gaps = 65/909 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L+D+ K+TVDF PNYDGS +EP VL AR PN+LVNG GIAVGMATNIP H Sbjct: 126 RLAKIAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+VD C+ ++ P+ ++ LMEI+ PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEIVDACLHLLKVPEATIEELMEIVPAPDFPTAGIIYGLEGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V EIPYQVNK +LE+IAELV EK+I I+ ++DESD+ G RVVI Sbjct: 246 CHFEDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L +L F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPRLCNLKQLLDIFLEHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + I+ SP P A+ LM ++W++S +++++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 ++S+ Y + +DG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RAEESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI 533 + +I + LDIL+ R+ I+ +EL +++ E RR+ I L++ ED I Sbjct: 486 REVMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 DMVVT+SH GY+K PL+ YRAQRRGG+G+ +D+D++ LFI +TH +L FS Sbjct: 546 TPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFAT 652 G VY KVW +P GS +RGK ++N+ L GE+IT ++P + S+ + YV +T Sbjct: 606 DRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVFMST 665 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 G V++ L +F ++G IA+ LD D ++ +D++L + G+ VRF Sbjct: 666 ALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFDEDD 725 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GRN+ GVRG++L G VI+M L+S +E Sbjct: 726 VRPM-GRNARGVRGMALEPGQNVIAM-------------------------LVSDRGDEA 759 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + DS+ +S +LT +E GFGKRT ++ R KG+ A Sbjct: 760 RDVGEDST---RVS-------------VLTATENGFGKRTPIGEYTRHGRGTKGMIAIQQ 803 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 S+ N G +VA V + D+I+L++D+G L+R V EIR RAT+GV + + ++ Sbjct: 804 SERN--GKVVAATLVRETDEIMLITDRGVLVRTRVAEIREMGRATQGVTLIALDDGAKLS 861 Query: 893 SVERIRESE 901 ++RI E++ Sbjct: 862 GLQRIVEND 870 >gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 868 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/898 (42%), Positives = 565/898 (62%), Gaps = 68/898 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDNP++ ++ L+E I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QI+VTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS L+ ++K EL+ ++D R++ I+E LD+ ED I EDMVVT+S G Sbjct: 489 LISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV ATK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHHNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAAL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ ++ D Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVED 848 >gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] Length = 868 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/895 (43%), Positives = 556/895 (62%), Gaps = 76/895 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EI+ PDFPT +I G G+++ Y TGRG +V+R ++H E+ G R Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L +L F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM R W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + S+ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ II EL S+K E RR++I ++ ED I ++MVVT+SH G Sbjct: 481 LLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + R G IA+ LD D ++ ++D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G VI++ L++GD Sbjct: 717 MQLDEGQNVIAL-------------------------LVAGD------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++Q +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+ QI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ E+E Sbjct: 783 VDQEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837 >gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101] gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101] Length = 839 Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 566/905 (62%), Gaps = 94/905 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I E ++D Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818 Query: 905 EAEST 909 E E T Sbjct: 819 EPEDT 823 >gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] Length = 893 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/901 (43%), Positives = 570/901 (63%), Gaps = 72/901 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 38 KETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 97 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD PAA RYTE Sbjct: 98 SARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMRYTEI 157 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH +L DL K+TVDF PNYDG+ +EP++L + PN+L+NG GIAVGMATNIP H Sbjct: 158 RMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATNIPPH 217 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV D C+A++ NP+I ++ L+E+I GPDFPT A+I G TG+K Y TGRG +++R Sbjct: 218 NLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIYGVTGVKEGYRTGRGRVIMRAR 277 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +H E + G R+ IV+ E+PYQVNKA +L +I ELVR+K+I I+DLRDESD+ G RVV Sbjct: 278 THFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVV 337 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+R +V+LN LY+ T +Q F +NMVAL +P L +L+AF+ R EVV R Sbjct: 338 IELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREVVTR 397 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R+ + L KAR+R HVL GLA+A++N+DEV+ +I+ + P A+ LM R W + ++ ++ Sbjct: 398 RSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLVEQML 457 Query: 432 --DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +D Y + DG +LS+ Q +AILELRL RLTGL +D I +E + Sbjct: 458 ARAAVDAKQFRPEGLAPEYGLFDDG-YHLSDGQAQAILELRLQRLTGLEQDKIVSEYRDV 516 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + LDIL+ R+ II +EL+++K + RR+ IV D+ ED I ED+VV Sbjct: 517 MERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSMEDLIASEDVVV 576 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+K PL YRAQ+RGG+G+ +D+DF+ +LFI +TH +L FSS G VY Sbjct: 577 TLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSRGRVYW 636 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P G +RG+ ++N++ L GE+I ++P ++ +N YV AT G V++ Sbjct: 637 IKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPI---KTFDDNRYVFMATSLGTVKKT 693 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 LS+F + SG IA+ LD D ++ V ++D++L + G+ VRF + +R GR Sbjct: 694 PLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPM-GRG 752 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG++L KG +VIS L+ ++EE Sbjct: 753 ARGVRGMTLGKGQKVIS--------------------------LLVAESEE--------- 777 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q +LT +E G+GKRT ++ R +G+ A ++ N G Sbjct: 778 -----------------QAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRN--GK 818 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V ++D+I+L++ G LIR V E+R SRAT+GV++ + + E++ +ER+ E+ Sbjct: 819 VVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGEKLAGLERVVET 878 Query: 901 E 901 + Sbjct: 879 D 879 >gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] Length = 839 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I E ++D Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818 Query: 905 EAEST 909 E+E T Sbjct: 819 ESEDT 823 >gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] Length = 839 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I E ++D Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818 Query: 905 EAEST 909 E+E T Sbjct: 819 ESEDT 823 >gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383] gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383] Length = 867 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/897 (43%), Positives = 554/897 (61%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE + II+ +P P A+ ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRAESE 430 Query: 438 SYTIGS-----------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + G DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I +EL SVK E RR++I ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + ++ AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147] Length = 866 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/896 (43%), Positives = 558/896 (62%), Gaps = 76/896 (8%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G Sbjct: 12 SLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVG 71 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 72 DVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIG 131 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVV Sbjct: 132 HELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVV 191 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 D C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 192 DACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEI 251 Query: 260 S-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 252 DRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGE 311 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 312 VPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELR 371 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S +++++ + + Sbjct: 372 KARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETEN 431 Query: 439 YTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 G DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 432 AAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVM 491 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT Sbjct: 492 AQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTEDLITPQDMVVT 551 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 552 MSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWV 611 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + YV T G V++ Sbjct: 612 KVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMTTALGTVKKTP 668 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + Sbjct: 669 LEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREA 727 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L +G QVI+M L++G Sbjct: 728 RGVRGMQLDEGQQVIAM-------------------------LVAGS------------- 749 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G + Sbjct: 750 --------------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRV 793 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 794 VAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 849 >gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243] gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b] gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668] gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a] gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98] gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14] gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9] gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210] gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894] gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177] gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112] gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215] gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243] gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b] gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668] gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a] gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] Length = 866 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + + G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37] gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37] Length = 898 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/901 (43%), Positives = 568/901 (63%), Gaps = 55/901 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Y K A Sbjct: 8 VSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK AH LL DL K+TVDF PNYDG+ P V+ + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 QKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC+A+I++ DI +D L+E I GPDFPT +I GR GI +AY TGRG I +R + Sbjct: 188 GEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGIINGRKGIIDAYHTGRGKIKVRAKAD 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE IVV E+PYQVNKA ++EKIAE V++K+I I+ LRDESD+ G R+V+E+ Sbjct: 248 IEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMVVEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +V+LN LY T +Q F +N VAL+ +P+ F L +L+AF+ R EVV RRT Sbjct: 308 KRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQPKLFNLKEMLEAFILHRREVVTRRTV 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL- 433 + L KAR+RAH+L GLAI++AN++ ++ +IR S P A+ L + WN + +++ Sbjct: 368 FELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAMLEAS 427 Query: 434 ------IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G D +++EVQ +AIL+LRL +LTGL + I E L I Sbjct: 428 GVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLEIIAA 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL + RL+ +I++EL +K PRRT I D+ ED I ED+VVT+SH G Sbjct: 488 LLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVTLSHEG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK LS Y +QRRGGKG++ M+DEDF+ L + STH ++L FS+ G +Y KV++L Sbjct: 548 YVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWLKVFQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S QARG+ ++NIL L +GERIT I+P ++ +V AT +G V++ LS + Sbjct: 608 PLASRQARGRPIVNILPLEEGERITAILPV---RDYADDKFVFMATANGTVKKTALSAYS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + SG IA+ L+ +E++ V N+I++ + G+ VRF + N Sbjct: 665 RPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENG----- 719 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSL--KNDSS 780 A VL + + + ++ ++ M + G + E++ SL N++ Sbjct: 720 ------------APVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKVVSLIIPNETG 767 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ILT +E G+GKRT D+ +R+ +G+ + VS+ N G Sbjct: 768 ------------------HILTTTENGYGKRTPLEDYSSKSRATQGVISIKVSERN--GK 807 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V V+ ND+I+L++++GTL+R V+E+ + R T+GV + TA+ E++V+++RI E Sbjct: 808 VVGAVQVDTNDEIMLITNRGTLVRTRVSEVSVVGRNTQGVTLIRTAEGEKIVALQRIEEI 867 Query: 901 E 901 E Sbjct: 868 E 868 >gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH] Length = 866 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/902 (43%), Positives = 558/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S +++++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLT 425 Query: 433 LID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + ++ + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L G QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDGQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] Length = 810 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/882 (43%), Positives = 551/882 (62%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G +K + K A Sbjct: 9 ILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDKPFKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+AA+YDAL RMAQD+S+R LIEG GNFGS+DGDPPAA RYTE RL Sbjct: 69 RTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +DG + +ID+PD LM++I+GPDFPTG +I+GR GI+ AY TGRG I IR + Sbjct: 189 REAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAHAQ 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE ++ + +IVVTEIPY+V K+ ++EKIAELV+E+RI I DLRDE+DR G RVVIEL Sbjct: 249 IETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELA 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ +VILNQLY++T +Q + + ++AL +P TL +L+ ++ +++V++RRT++ Sbjct: 309 RGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVILRRTRH 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++D V+ +IR S + AR LM+ Sbjct: 369 DLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + L+E Q +AIL++RL RLTGL R+ + E L EI+ +L+S Sbjct: 413 ----------SFSLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEK 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L IIKQEL ++D RRT+IV G D E ED I ED+V+T++H GY+KR+P++ Sbjct: 463 MVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIKRMPVNT 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGG+G +G+ R+EDFV LFI +TH ++LFF++ G VY +V +P ARG Sbjct: 523 YRSQRRGGRGVTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARG 582 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N++ + + E++T ++P F ED ++ T+ G V+R L++F I R G Sbjct: 583 TAVVNLIEIERDEQVTAVIPVRDFGEDRD------LLMCTRRGVVKRTALAEFSHIRRGG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD DE+++VE D+L+ T+LGQ +RFP++ +R GR + GV GI L +G Sbjct: 637 LIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTM-GRAARGVMGIRLDEG 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M E Sbjct: 696 DEVVGM-----------------------------------------------------E 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E +L +++ GFGKRT +FR R GKGIRA ++ N G + V ++ Sbjct: 703 VADDEAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARN--GRVAGFEVVRPGEE 760 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++L+S G ++RVPV+++ + RA +GV + +RV +V Sbjct: 761 VMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAV 802 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 93/203 (45%), Gaps = 19/203 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VKR L+ + RRGG + + D + + + VL + LG + R Sbjct: 619 GVVKRTALAEFSHIRRGGL--IALALDPGDELVAVELTDGRGDVLVVTRLG-----QAIR 671 Query: 606 LPIGSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 P+ + G+A ++ L++G+ + M +DE+ +++ T G +R + Sbjct: 672 FPVAEVRTMGRAARGVMGIRLDEGDEVVG-MEVADDEA-----HLLVITDLGFGKRTPVR 725 Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +F R GK A+ L +R+ + E +++L ++ G +R P+ + V GR Sbjct: 726 EFRAQGRGGKGIRAISLTARNGRVAGFEVVRPGEEVMLISQGGIVLRVPVDQVSV-QGRA 784 Query: 721 SVGVRGISLAKGDQVISMAIVLH 743 + GV + L GD+V ++A V H Sbjct: 785 AQGVTVMRLEPGDRVSAVATVAH 807 >gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264] Length = 866 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/902 (43%), Positives = 558/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S +++++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLT 425 Query: 433 LID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + ++ + DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I +EL +VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L G QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDGQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CMR15] Length = 885 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 574/902 (63%), Gaps = 71/902 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ K+TVDF PNYDGS EP +L AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ ++ NPD +D L+E+I PDFPT +I G +G++ Y TGRG +V+R +H E Sbjct: 191 VDGCLHLLHNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVVMRAKTHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK +LE+IAELV EKRI I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREVVTRRTVFDL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R H+L GLA+A+AN+DE + II+ +P P A++ELM R+W++ +++++ + Sbjct: 371 RKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVREMLSRAE-- 428 Query: 438 SYTIG----------------SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S T+G +G +Y LS+ Q + IL++RL RLTGL +D I E + Sbjct: 429 SDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ II +EL ++ E RR++I +++ ED I +D+VV Sbjct: 489 MAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLITPQDLVV 548 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G +Y Sbjct: 549 TLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGRLYW 608 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRR 659 KVW +P GS +RG+ ++N+ L+ GE+I I+P + DE +V +T G V++ Sbjct: 609 LKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQH----FVFMSTSKGTVKK 664 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L++F ++G IA+ LD D ++ + ++D++L + G+ VRF + +R GR Sbjct: 665 TALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVRPM-GR 723 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GVRG++L +G QVI+M + A A+ T+ + + Sbjct: 724 QARGVRGMNLEEGQQVIAMLV---APAE-------------------------TAGEGEQ 755 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +V G+ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 756 AVAGS---------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN--G 798 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +VA V D+I+L++ G LIR V+EIR RAT+GV + + + ++ ++R+ E Sbjct: 799 KVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSGLQRVVE 858 Query: 900 SE 901 S+ Sbjct: 859 SD 860 >gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1] gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1] gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] Length = 888 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/897 (43%), Positives = 553/897 (61%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 33 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 93 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEE 272 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 273 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 332 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 333 EVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYEL 392 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + Sbjct: 393 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETE 452 Query: 438 SYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + G DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 453 NAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDV 512 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL VK E RR++I ++ ED I +DMVV Sbjct: 513 MAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVV 572 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 573 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 632 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ Sbjct: 633 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALGTVKKT 689 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 690 PLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GRE 748 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L QVI+M L++G Sbjct: 749 ARGVRGMQLDDAQQVIAM-------------------------LVAGS------------ 771 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 772 ---------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GR 814 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 815 VVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 871 >gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344] gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229] gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247] gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344] gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229] gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247] gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] Length = 866 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + + G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] Length = 867 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/897 (43%), Positives = 557/897 (62%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L +GE+I ++P E + + +V AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849 >gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110] gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110] Length = 881 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/917 (42%), Positives = 563/917 (61%), Gaps = 89/917 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP +D LMEI+ PDFPT +I G G+++ Y TGRG +V+R H E Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVRDGYRTGRGKVVMRAKCHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIEVFLQHRREVVTRRTVFTL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL---- 433 KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSRAD 430 Query: 434 -----IDD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DD + +GSDG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI + LDIL+ R+ II +EL ++K E RR+ + D+ ED I D Sbjct: 491 AEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVEHSAYDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PL+ YRAQ+RGG+G+ V +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I + FP D+ YV Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ------YVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 ATSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GRN+ GVRG+SL G VI+M L++ D Sbjct: 725 EDVRPL-GRNARGVRGMSLDPGQGVIAM-------------------------LVAED-- 756 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 -------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAI 791 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V+ +D+I+L++DKG L+R V EIR RAT+GV + + + Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAK 849 Query: 891 VVSVERIRESEIVDEAE 907 + ++RI E++ E+E Sbjct: 850 LSGLQRIVENDANGESE 866 >gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] Length = 954 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/948 (42%), Positives = 575/948 (60%), Gaps = 112/948 (11%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K Sbjct: 25 KEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 85 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP H Sbjct: 145 RMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A+IDN DI +D LM+ I GPDFPT +I GR GI AY TGRG I IR Sbjct: 205 NLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYIRAR 264 Query: 254 SHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE G R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I I +LRDESD+ G RVV Sbjct: 265 ADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVV 324 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV R Sbjct: 325 IELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREVVTR 384 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L+ +W +S ++ ++ Sbjct: 385 RTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMV 444 Query: 432 DLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D Y + DG +LS Q +AIL+LRL RLTGL + + E + Sbjct: 445 ERAGADACRPENLDPQYGL-RDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILT 503 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E + IL++ RL+ +I++EL VK + RRT I+E LD+ D I E+ VVT+ Sbjct: 504 QIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVVTI 563 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y+AQRRGG+G++ +++ED+V L + ++HT++L FSS G VY K Sbjct: 564 SHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYWLK 623 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------------------- 636 + +P S +RG+ L+N+L L++GERIT ++ Sbjct: 624 TYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVIEH 683 Query: 637 -------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 +DE + Y+ AT G V++ L F + SG IA+KL+ D Sbjct: 684 DDVDDVEGDDDSDEKDEPT--GAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 741 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++ ++++ + G+ +RF S +R+ GRN+ GVRG+ L +G ++ISM I Sbjct: 742 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLI--- 797 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + D +I +SV G Sbjct: 798 --PEPDAQILT------------------------ASVRG-------------------- 811 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +GKRT+ +F R G+G+ A ++ N G LV V + ++I+L+SD+GTL+ Sbjct: 812 ----YGKRTAMEEFPRRGRGGQGVIAMVTNERN--GPLVGAVQVLEGEEIMLISDQGTLV 865 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDEAES 908 R V+E+ R T+GV + +K E +V +ER++E E++++ E+ Sbjct: 866 RTRVDEVSSLGRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEA 913 >gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] Length = 873 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/924 (43%), Positives = 559/924 (60%), Gaps = 88/924 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L DL K TVDF PNYDGS +EP+V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E VD C+ ++ NP+ +D LMEII PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGIIYGLNGVREGYRTGRGKVVMRAK 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V EIPYQVNK +LE++AELV EK++ I+ ++DESD+ G RVVI Sbjct: 246 CHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPKLCNLRDLVEVFLEHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD-LI 431 T + L KAR+R HVL GLA+A+AN+DE + II+ SP P A++ LM +SW++S +++ L+ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSLVREMLV 425 Query: 432 DLIDDSS--------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 D+ Y + +DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKIIGEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI 533 + I + LDILS R+ II +EL++VK E RR+ I + ++ ED I Sbjct: 486 KEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQELGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 DMVVT+SH GYVK PL+ YRAQRRGG+G+ +D+D++ LFI +TH +L FS Sbjct: 546 TPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWMLCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646 + G VY KVW +P G ARGK ++N+ L E+IT ++P FP D Sbjct: 606 NRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDH------ 659 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+ +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ V Sbjct: 660 YIFMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAV 719 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF +R GRN+ GVRG++L G VI+M L++ Sbjct: 720 RFDEDDVRPM-GRNARGVRGMALEPGQNVIAM-------------------------LVA 753 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 D + Q +LT +E G+GKRTS ++ R KG Sbjct: 754 ED---------------------------ESQSVLTATENGYGKRTSITEYTRHGRGTKG 786 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A ++ N G +VA V D+I+L++D+G L+R V+EIR RAT+GV + S Sbjct: 787 MIAIQQTERN--GRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRATQGVTLISLD 844 Query: 887 KDERVVSVERIRESEIVDEAESTE 910 ++ ++RI E++ +A TE Sbjct: 845 DGSQLGGLQRIVENDAGSDAGDTE 868 >gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] Length = 810 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/882 (44%), Positives = 551/882 (62%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRILF M + G +K + K A Sbjct: 9 ILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDKPFKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+AA+YDAL RMAQD+S+R LIEG GNFGS+DGDPPAA RYTE RL Sbjct: 69 RTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +DG + +ID PD LM++I+GPDFPTG +I+GR GI+ AY TGRG I IR + Sbjct: 189 REAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIITIRAHAQ 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + + +IVVTEIPY+V K+ ++EKIAELV+E+RI I DLRDE+DR G RVVIEL Sbjct: 249 IETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELA 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ +VILNQLY++T +Q + + +AL +P TL +L+ ++ +++V+VRRT++ Sbjct: 309 RGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVIVRRTRH 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++D V+ +IR S + AR LM+ ++N Sbjct: 369 DLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME-NFN------------ 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E Q +AIL++RL RLTGL R+ + E L EI+ +L+S Sbjct: 416 -------------LTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRAVLNSEK 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L IIKQEL ++D RRT+IV G + E ED I ED+V+T++H GY+KR+P+ Sbjct: 463 MVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDT 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGG+G +G+ R+EDFV+ LFI +TH ++LFF++ G VY +V +P S ARG Sbjct: 523 YRSQRRGGRGITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARG 582 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N++ + Q E++T ++P F ED ++ T+ G V+R L++F I R G Sbjct: 583 TAVVNLIEIGQDEQVTAVIPVRDFGEDRD------LLMCTRRGVVKRTALAEFGHIRRGG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD DE+++V+ D+LL T+ GQ +RFP++ +R GR + GV GI L +G Sbjct: 637 LIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTM-GRTARGVMGIRLEEG 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M E Sbjct: 696 DEVVGM-----------------------------------------------------E 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + E +L ++++G+GKRT +FR R GKGIRA ++ N G + V ++ Sbjct: 703 VADDEAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARN--GQVAGFEVVRPGEE 760 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++L+S G ++RVPV+++ I RA +GV + +RV +V Sbjct: 761 VMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAV 802 >gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC] gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601] gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC] gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601] Length = 896 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 561/910 (61%), Gaps = 77/910 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 23 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKK 82 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 83 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 142 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS +EP+VL +R PN+LVNG GIAVGMATNIP H Sbjct: 143 RLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPH 202 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V+R Sbjct: 203 NLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVVMRAK 262 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G R+VI Sbjct: 263 VHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVI 322 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RR Sbjct: 323 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREVVTRR 382 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 383 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLT 442 Query: 433 LIDDSSYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 + + +D G LS+ Q + IL++RL RLTGL +D I E Sbjct: 443 RTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAE 502 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDC 532 + I+ LDIL+ +R+ II +EL +++ E RR+ I D+ ED Sbjct: 503 YKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLSTEDL 562 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L F Sbjct: 563 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 622 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFA 651 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P + S+ + YV A Sbjct: 623 SNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVFMA 682 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L +F ++G IA+ LD D ++ E+D++L + G+ VRF + Sbjct: 683 TSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVRFDEN 742 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GRN+ GV+G+ L G VI+M L++ D Sbjct: 743 DVRPM-GRNARGVKGMQLEDGQSVIAM-------------------------LVAED--- 773 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 774 ------------------------ENQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 809 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + ++ Sbjct: 810 QSERN--GRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKL 867 Query: 892 VSVERIRESE 901 ++RI E++ Sbjct: 868 SGLQRIVEND 877 >gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 884 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/910 (43%), Positives = 556/910 (61%), Gaps = 77/910 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ V+ +PD +D +MEII PDFPT +I G G+K Y TGRG +V+R Sbjct: 186 NLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAR 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLT 425 Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 DD Y +G DG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532 + I++ LDILS R+ II EL ++K E RRT + D+ ED Sbjct: 486 YKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLSTEDL 545 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L F Sbjct: 546 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFA 651 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D ++ + +V A Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVFMA 665 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 666 TSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDEN 725 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G VI+M L++ D Sbjct: 726 DVRPL-GRAARGVRGMMLEDGQSVIAM-------------------------LVAED--- 756 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 ------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 792 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ D+I+L++DKG L+R V EIR RAT+GV + + + ++ Sbjct: 793 QSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDEGAKL 850 Query: 892 VSVERIRESE 901 ++RI E++ Sbjct: 851 SGLQRIVEND 860 >gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] Length = 878 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/908 (43%), Positives = 567/908 (62%), Gaps = 84/908 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSWN ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 I LA+ D V+S+ AI+ Y +R ++ + R Sbjct: 724 IKLAESDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSR----------------- 766 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +G IS +++ R+G + A V ++I Sbjct: 767 ATQGVIS------------------------------IKVTERNGSVVGAVQVEDTDQI- 795 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839 Query: 900 SEIVDEAE 907 +E VD+ E Sbjct: 840 AEPVDDEE 847 >gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] Length = 866 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLM 425 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + + G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] Length = 819 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/891 (42%), Positives = 570/891 (63%), Gaps = 85/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I ++I EM+NSY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++G+ +K Sbjct: 3 EKRGNIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R +L++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A ++ D+ KDTVD+RPN+D S +EP VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG V +IDN + ++ LME I+GPDFPT A I+G GIK AY TGRG I + Sbjct: 183 PPHNLGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + R+QI++TEIPYQVNKA ++EKIAELVR+K++ I+DLRDESDR+G R+ Sbjct: 243 RAKASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+V+LN+LY++T L+ F V M+A+ +P+ L +L ++ +++++ Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA +RAH+L GL IA+ NLDEV+++IR S N + A+ LM+ Sbjct: 363 RRTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLME----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE Q +AIL++RL +LTGL + + E L I +I Sbjct: 412 ---------------TFTLSEKQAQAILDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +L IIK EL+ +K++ RRT I + ++ ED I E++V+T++H GY+KR Sbjct: 457 LANERLMLNIIKDELIEIKEKYGDERRTEITRAIGEINIEDMITEEEVVITLTHFGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y++Q+RGGKG + + R+EDFV +L S+H +LFF++ G VYK V+ +P Sbjct: 517 LPADTYKSQKRGGKGIAALTTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEAR 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ L+ E + +P +++ Y+V ATK+G +++ +LS F + Sbjct: 577 RQAKGTAIVNLIPLSPNETVAATIPVGR---QFDSKYLVLATKNGIIKKTQLSQFESTRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ + DE++ V+ ++++I+L T G +RF +R GR+++GV+GI+L+ Sbjct: 634 SGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRDM-GRSAMGVKGINLS 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+SM IV E Sbjct: 693 PKDHVVSMEIV----------------------------------------------EEN 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L L +SEKGFGKRT + ++R+ R GKGI+ +V+ + G LV V D Sbjct: 707 KDL-------LVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVT--GKTGPLVGAKIVTDE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+++L+++ GT+IR+ V+ I R TKGV + +D+ ++++ + +E Sbjct: 758 DEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTE 808 >gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY] gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis] gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis] gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195] Length = 821 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/886 (43%), Positives = 558/886 (62%), Gaps = 86/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +NPDI + LME+I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ ++ V+ Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL +A+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV GL +EDED I RE++VVT++H GYV Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + LY+ F TKHG +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++ V I++ TK G +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M Sbjct: 693 LTDDDVVVGM-------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E+ +E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LVAV Sbjct: 703 ---EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ G LIR+ +N+I I R T+GV + A++E V +V Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803 >gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 830 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Y K A Sbjct: 8 IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR + Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+VIE+ Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+++RR+ Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I L Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 Y SE Q +AIL+LRL ++T L ++ I E N L + KE +IL + Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYVK PLS Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP S AR Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P + + +NL + T HG V+++ LS F + +G I Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI + K D+ Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ + KN S Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 >gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A [imported] - Buchnera sp. (strain APS) gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 830 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Y K A Sbjct: 8 IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR + Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+VIE+ Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+++RR+ Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I L Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 Y SE Q +AIL+LRL ++T L ++ I E N L + KE +IL + Sbjct: 424 -------AKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYVK PLS Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP S AR Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P + + +NL + T HG V+++ LS F + +G I Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI + K D+ Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ + KN S Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 >gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] Length = 829 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/885 (43%), Positives = 560/885 (63%), Gaps = 86/885 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + C + Sbjct: 694 DVAV-----------------------------------------------------CMD 700 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++++ +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 701 IAVEDEKLLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKI 803 >gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523] Length = 862 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 568/904 (62%), Gaps = 69/904 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R+Q Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDN ++ ++ L+ I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTIALIDNSELTIEDLIHYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QIVVTEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I SD + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS + L+ ++K+EL+ ++D R++ I+E LD+ ED I E+MVVT+S G Sbjct: 489 LIGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L + ERIT +MP + W YV AT+ G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATRLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + + +++SM +V + D Sbjct: 725 MRIHPDQKIVSM-LVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V +++ I++++D GTL+R +E+R R+ +GV + + +E+++S++ +++ + VD Sbjct: 791 VENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDD-VDNG 849 Query: 907 ESTE 910 E E Sbjct: 850 EDIE 853 >gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] Length = 865 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/894 (44%), Positives = 550/894 (61%), Gaps = 67/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 12 VLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQD+SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 72 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG GIAVGMATNIP HN+ Sbjct: 132 SKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNM 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ GC+A +DN DI +D LM+ I GPDFPTGA+I GR GI AY TGRG I +R + Sbjct: 192 REVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 + S ++ I+V EIPYQ+NKA ++E+IAELV+EK+I I +LRDESD+ G RVVIEL+ Sbjct: 252 VVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDESDKDGLRVVIELR 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG DV+LN LY T+LQS+ +NMVAL +P+ L ++ AFV R EVV RRT Y Sbjct: 312 RGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQPKVLNLKEMIAAFVRHRREVVTRRTVY 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI- 434 LL KAR+R HVL GLA+A+AN+DEV+ +I+ SP AR L+ +W D+ +++ Sbjct: 372 LLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAWAPGDVNAMLERAG 431 Query: 435 ------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 DD G +G +LS Q +AIL+LRL RLTGL + + E EI + Sbjct: 432 AAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLLQEYADKLTEIADY 491 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 LDIL RL +I++EL E R T I + D+ ED I ED VVT+SH GY Sbjct: 492 LDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVEDLITEEDRVVTISHGGY 551 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 K PL+ Y+AQRRGG GRS ++DEDFV L I STH+++L FS+LG VY +V+ +P Sbjct: 552 AKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHSTILCFSNLGKVYWLRVFNIP 611 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S +RG+ ++N+L L+ GER+T+I+P E Y+ AT G V++ +++ F + Sbjct: 612 VASRNSRGRPMVNLLPLDDGERVTSILPV---EGYEAGSYIFMATAKGTVKKTEMTQFAR 668 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G A++L+ D ++ D++L + G+ VRF +A+R GR + GVRGI Sbjct: 669 QRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFNEAAVRPM-GRTAKGVRGI 727 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +IS+ I Q R+++ +SE Sbjct: 728 RLGGDYSLISLIIP-----------------KQQGRILT------------------VSE 752 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 G+GKR+ + DF + R G+ A S N GALV V Sbjct: 753 ------------------NGYGKRSETADFPVRGRGTMGVIAMSTSDRN--GALVGAEQV 792 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D D+I+L+S++GT +R ++EI + R T+GV + T +E +VS+ RI E + Sbjct: 793 WDGDEIMLISNQGTAVRTRIDEISLQGRNTQGVRVIRTRDEESLVSISRIAEDD 846 >gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] Length = 880 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/913 (43%), Positives = 561/913 (61%), Gaps = 77/913 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL DL K+TVDF PNYDGS +EP+VL R PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHLLRNPEASIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVVMRAKVHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L ++K F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPKLCNLKDLIKVFLQHRREVVTRRTVFNL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 KAR+R HVL GLA+A+AN+DE + IIR +P P A+ ELM + W++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKLVREMLTRTRAD 430 Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DD Y +GSDG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI++ LDIL+ R+ II +EL ++K E RR+ + D+ ED I D Sbjct: 491 GEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D+V LFI +TH +L FS+ G Sbjct: 551 MVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L +GE+I ++ ++ S+ + YV AT G Sbjct: 611 LYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQYVFMATSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GVRG+ L G VI+M Sbjct: 731 -GRNARGVRGMMLEDGQGVIAML------------------------------------- 752 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++E+ Q +LT + G+GKRTS ++ R KG+ A S+ N Sbjct: 753 --------VAEDELQS-------VLTATVNGYGKRTSITEYTRHGRGTKGMIAITQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + ++ ++R Sbjct: 798 --GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIGLDEGSKLSGLQR 855 Query: 897 IRESEIVDEAEST 909 I E++ A+ T Sbjct: 856 IVENDANPVADET 868 >gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 830 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Y K A Sbjct: 8 IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR + Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+VIE+ Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+++RR+ Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I L Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 Y SE Q +AIL+LRL ++T L ++ I E N L + KE +IL + Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYVK PLS Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP S AR Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P + + +NL + T HG V+++ LS F + +G I Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI + K D+ Sbjct: 654 AINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ + KN S Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 >gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS] gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS] Length = 881 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/917 (42%), Positives = 561/917 (61%), Gaps = 89/917 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP HNL EV Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP +D LMEI+ PDFPT +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLQHRREVVTRRTVFTL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----- 432 KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSRAD 430 Query: 433 --LIDDSSY---------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +I+ Y +GSDG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 EI + LDIL+ R+ II EL ++K E RR+ + D+ ED I D Sbjct: 491 AEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVEHSAFDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PL YRAQ+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I + FP D+ YV Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQ------YVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 +T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 STSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFAE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GRN+ GVRG+SL G VI+M L++ D Sbjct: 725 DDVRPL-GRNARGVRGMSLDPGQGVIAM-------------------------LVAED-- 756 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ++Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 -------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAI 791 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V+ +D+I+L++DKG L+R V EIR RAT+GV + + + Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAK 849 Query: 891 VVSVERIRESEIVDEAE 907 + ++RI E++ E+E Sbjct: 850 LSGLQRIVENDANGESE 866 >gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6] gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6] Length = 867 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/897 (43%), Positives = 556/897 (61%), Gaps = 76/897 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 H LL D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EV Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEE 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG Sbjct: 251 IDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L Sbjct: 311 EVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 371 RKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETE 430 Query: 436 ---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 NASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREV 490 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I + LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVV Sbjct: 491 MAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVV 550 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY Sbjct: 551 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 610 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ +P GS +RG+ ++N+ L GE+I ++P E + + +V AT G V++ Sbjct: 611 VKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKFVFMATSLGTVKKT 667 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L F + + G IA+ LD D ++ +D++L + G+ VRF + +R GR Sbjct: 668 PLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GRE 726 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L G QVI++ L++G Sbjct: 727 ARGVRGMQLEDGQQVIAL-------------------------LVAGS------------ 749 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G Sbjct: 750 ---------------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GK 792 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 793 VVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 849 >gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124] gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124] gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] Length = 839 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/905 (42%), Positives = 567/905 (62%), Gaps = 94/905 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+D+V+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--------RESEIVD 904 ++L++++G IR+ V++I + SR+ GV + T +DE VV++ +I E ++D Sbjct: 759 LMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMTLLD 818 Query: 905 EAEST 909 E+E T Sbjct: 819 ESEDT 823 >gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91] Length = 866 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/902 (43%), Positives = 554/902 (61%), Gaps = 76/902 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H LL D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAA 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E+ G R I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RR Sbjct: 306 ELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S ++D++ Sbjct: 366 TVYELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLT 425 Query: 433 LIDDSSYTIG-----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + + G DG LS+ Q + IL++RL RLTGL +D I Sbjct: 426 RAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIG 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + +I + LDIL+ R+ +I EL VK E RR++I ++ ED I Sbjct: 486 EYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITP 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +DMVVT+SH GYVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ Sbjct: 546 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY KV+ +P GS +RG+ ++N+ L GE+I ++P E + + YV T G Sbjct: 606 GRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALG 662 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ L F + + G IA+ LD D ++ +D++L + G+ VRF + +R Sbjct: 663 TVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRP 722 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRG+ L QVI+M L++G Sbjct: 723 M-GREARGVRGMQLDDAQQVIAM-------------------------LVAGS------- 749 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +EQ +LT +E G+GKRT ++ R KG+ A S+ Sbjct: 750 --------------------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSER 789 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +VA V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++ Sbjct: 790 N--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQ 847 Query: 896 RI 897 +I Sbjct: 848 QI 849 >gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 830 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Y K A Sbjct: 8 IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR + Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+VIE+ Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+++RR+ Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I L Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 Y SE Q +AIL+LRL ++T L ++ I E N L + KE +IL + Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENP 476 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ +IK ELLS+++ RRT+I E D+ ED I +ED+VVT+SH GYVK PLS Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYVKYQPLS 536 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP S AR Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P + + +NL + T HG V+++ LS F + +G I Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI + K D+ Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ + KN S Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 >gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5] gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5] Length = 821 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/886 (43%), Positives = 558/886 (62%), Gaps = 86/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +NPDI + LME+I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ ++ V+ Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL +A+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV GL +EDED I RE++VVT++H GYV Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + +GE I I+P E + LY+ F TKHG +R LS F I Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++ V I++ TK G +RFP + +R GR + GV+GI+ Sbjct: 634 RNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M Sbjct: 693 LTDDDVVVGM-------------------------------------------------- 702 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E+ +E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LVAV Sbjct: 703 ---EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ G LIR+ +N+I I R T+GV + A++E V +V Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803 >gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] Length = 886 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/918 (43%), Positives = 558/918 (60%), Gaps = 77/918 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ V+ +PD +D +MEII PDFPT +I G G+K Y TGRG +V+R Sbjct: 186 NLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAR 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM R+W++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLT 425 Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 DD Y +G DG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532 + I++ LDIL+ R+ II EL ++K E RRT + D+ ED Sbjct: 486 YKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLSTEDL 545 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L F Sbjct: 546 ITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFA 651 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D ++ + +V A Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVFMA 665 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF + Sbjct: 666 TSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKGVRFDEN 725 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 +R GR + GVRG+ L G VI+M L++ D Sbjct: 726 DVRPL-GRAARGVRGMMLEDGQSVIAM-------------------------LVAED--- 756 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 ------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQ 792 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 S+ N G +VA V+ D+I+L++DKG L+R V EIR RAT+GV + + + ++ Sbjct: 793 QSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDEGAKL 850 Query: 892 VSVERIRESEIVDEAEST 909 ++RI E++ A T Sbjct: 851 SGLQRIVENDANPPAADT 868 >gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N] gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N] Length = 883 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/899 (43%), Positives = 553/899 (61%), Gaps = 78/899 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNLGEV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V+GC+ + NP+ +D L+EII PDFPTG +I G G++ Y TGRG +++R +H E Sbjct: 191 VEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIYGMVGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV EK+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLISYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM R+W++S +++++ D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVREMLARADGD 430 Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + DG LSE Q + IL +RL RLTGL +D I E + Sbjct: 431 VVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMD 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II +EL ++K E + RR+ I +++ ED I DM Sbjct: 491 TIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITPMDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D+V LFI +TH +L FS+ G V Sbjct: 551 VVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KVW +P G+ +RGK ++N+ L GE+IT ++P E ++ YV AT G V+ Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---DDHYVFMATSRGTVK 667 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R G Sbjct: 668 KTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPM-G 726 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ L VI++ L++GD Sbjct: 727 RAARGVRGMMLEDSQSVIAL-------------------------LVAGD---------- 751 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + Q +LT +E G+GKRTS ++ R KG+ A S N Sbjct: 752 -----------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRN-- 792 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V VN +D+I+L++ G L+R V+EIR RAT+GV + S + V R+ Sbjct: 793 GRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGSSLSGVRRV 851 >gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3] gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3] Length = 851 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 ++ NP+ +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + + ++ AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFIFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M L++G Sbjct: 717 MQLEDGQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+E+R RAT+GV + S + ++ +++I Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 833 >gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8] gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8] Length = 889 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/905 (43%), Positives = 554/905 (61%), Gaps = 84/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP +D LME+I PDFPTG +I G +G++ Y TGRG +++R +H E Sbjct: 191 VDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-- 435 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S +++++ D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRADGD 430 Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + DG LS+ Q + IL +RL RLTGL +D I E + Sbjct: 431 TPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II EL ++K E T RR+ I +++ ED I DM Sbjct: 491 TIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITPTDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH +L FS+ G V Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RGK ++N+ L +GE+IT ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDH------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG+ L VI++ L++GD Sbjct: 725 M-GRNARGVRGMMLEDTQTVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRT ++ R KG+ A S Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V V +D+I+L++ G L+R V+EIR RAT+GV + + + V Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDGSSLSGVR 849 Query: 896 RIRES 900 R+ ES Sbjct: 850 RVVES 854 >gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 830 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/883 (44%), Positives = 572/883 (64%), Gaps = 71/883 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Y K A Sbjct: 8 IIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL+DL K+TV+F PNYDG+ P +L A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I IR + Sbjct: 188 NEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I + +E IV EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+VIE+ Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+VILNQLY T LQ F +NMVAL +P+ +L ILK F++ R+E+++RR+ Sbjct: 308 KREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNK R+R H+L GL +A+ N++ ++ II+ S N A++ ++Q++W + I L Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL---- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 Y SE Q +AIL+LRL ++T L ++ I E N L + KE +IL + Sbjct: 424 -------AKKHEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENP 476 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ +IK ELLS+++ RRT+I E ++ ED I +ED+VVT+SH GYVK PLS Sbjct: 477 KKMFEVIKSELLSIQNNFSDKRRTKITENHSNINMEDLINQEDVVVTLSHSGYVKYQPLS 536 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQRRGGKG+S +++EDF+ L I +TH ++L FSS G +Y KV++LP S AR Sbjct: 537 DYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHAR 596 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P + + +NL + T HG V+++ LS F + +G I Sbjct: 597 GRPIVNLLPLSPKERITAILPVHKYQ---DNLNIFMTTAHGIVKKSSLSQFKKPRFAGII 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V N+I+L T+ G+ V+F +++R GR + GV+GI + K D+ Sbjct: 654 AINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIKIKKNDK 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ + KN S Sbjct: 713 VVSLIVP----------------------------------KNKGS-------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL ++ G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 725 -----ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVIEKDQIM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++D GTL+R+ V+E+ + R T+GV++ T+K+E+VV++++I Sbjct: 778 MITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 >gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113] gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113] Length = 846 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/894 (44%), Positives = 554/894 (61%), Gaps = 71/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 VFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R LI+GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYD S EP VL AR PN+L NG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++ C+A+ID+P + + LM I GPDFPT ++ G GI+ AY TGRG IV+R +H Sbjct: 188 GELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIRGIQEAYLTGRGRIVMRARTH 247 Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E G +Q I+VTE+PY VNKA +LEKI LV++K+IV I LRDESD+ G R+V+EL Sbjct: 248 VETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGMRMVVEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R +V+LNQLY +T LQS+F +NMVAL +P+ L L+ F+ R+EVV RRT Sbjct: 308 RRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEVFLRHRQEVVTRRTM 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAHVL GLAIA+ N+D ++ +I+ S +P AR L+ R W + D++ Sbjct: 368 FELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVIDMLQRA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +++Y + DG LS Q +AILE+RL RLTGL + I +E + I I Sbjct: 428 GAASSPPEELEAAYGLQRDG-YRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQVIIFIS 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L+IL++ RL+ +I++EL+ + ++ PRRT I + +D+ ED I E++VVT+SH Sbjct: 487 ELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVVTLSHS 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY +KV+ Sbjct: 547 GYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYWKKVYE 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP GS ARGK +N+L L +GERI T++ E E + Y+ T G V++ L+DF Sbjct: 607 LPQGSRIARGKPFVNLLPLEEGERINTVLSIREFE---KDKYIFMVTALGVVKKTSLADF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L D+++ + E +I+L + G+ +RF +R GR + GV+ Sbjct: 664 SRPRSSGIIALDLREGDQLVGADLTDGEQEIMLFSSGGKVIRFSERDVRPL-GRTARGVK 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L +VI++ I + Y K + I Sbjct: 723 GMELPSKHRVIALIIAASGTILTATELGYGKRTA-------------------------I 757 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +E R Q R GKGI + + N GA+V Sbjct: 758 AEYRLQ-----------------------------GRGGKGIISIRTTPRN--GAVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D+++L+S+ GTLIR PV+ I + R T+GV + + + ER+V +ERI E Sbjct: 787 QVEKEDEVVLISNGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840 >gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 878 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/908 (44%), Positives = 566/908 (62%), Gaps = 84/908 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH G Sbjct: 488 LLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 I LA D V+S+ AI+ Y +R ++ + R Sbjct: 724 IKLAGEDSVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSR----------------- 766 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +G IS +++ R+G + A V ++I Sbjct: 767 GTQGVIS------------------------------IKVTERNGSVVGAVQVDDADQI- 795 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839 Query: 900 SEIVDEAE 907 +E VD+ E Sbjct: 840 AEPVDDEE 847 >gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43] Length = 850 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 551/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + + G Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420 Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L QVI+M L++G Sbjct: 717 MQLDDAQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 >gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2] gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2] Length = 879 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/908 (43%), Positives = 566/908 (62%), Gaps = 84/908 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 I LA+ D V+S+ AI+ Y +R ++ + R Sbjct: 724 IKLAEKDSVVSLIVPRGEGAILTVTQNGYGKRTAAEEYPTKSR----------------- 766 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + +G IS +++ R+G + A V ++I Sbjct: 767 ATQGVIS------------------------------IKVTERNGSVVGAVQVEDTDQI- 795 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839 Query: 900 SEIVDEAE 907 +E VD+ E Sbjct: 840 AEPVDDEE 847 >gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786] Length = 850 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 554/891 (62%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442 HVL GLA+A+AN+D+ + II+ +P P A++ELM +SW++S +++++ + + G Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAAGG 420 Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 REAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFSA---DKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G QVI+M L++G Sbjct: 717 MQLDEGQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E GFGKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 >gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] Length = 850 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 549/891 (61%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG- 442 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S ++D++ + + G Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420 Query: 443 ----------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L QVI+M L++G Sbjct: 717 MQLDDAQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 >gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2] gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2] Length = 898 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/916 (42%), Positives = 564/916 (61%), Gaps = 80/916 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS QEP+VL +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ ++ NP+ +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ +++++ Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430 Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + +D G LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ R+ II +EL +VK E RR+ + D+ ED I D Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I ++P FPED +V Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDH------FVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GRN+ GVRG+++ + VI+M + A+AD +++G Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 Q +LT +E G+GKRT+ ++ R KG+ A Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + + + Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAK 858 Query: 891 VVSVERIRESEIVDEA 906 ++ ++RI E++ D A Sbjct: 859 LIGLQRIVENDANDNA 874 >gi|118578454|ref|YP_899704.1| DNA gyrase, A subunit [Pelobacter propionicus DSM 2379] gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379] Length = 843 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/894 (43%), Positives = 568/894 (63%), Gaps = 61/894 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M M +WNK Y K AR+ Sbjct: 10 AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A YD + RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL++ Sbjct: 70 VGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEIRLRQ 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 +H LL DL K+TV PNY+ EP VL +++PN+L+NG GIAVGMATNIP HNLGE Sbjct: 130 LSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPHNLGE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG +AVI+NPD+ + L+ +I GPDFPTGA I GR GI++AY TGRG I IR +HIE Sbjct: 190 VIDGIIAVINNPDLAHEELLALIPGPDFPTGATIYGRQGIRDAYTTGRGIIQIRAKAHIE 249 Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +R+ I+VTE+PYQVNKA ++EKIAELV+EK+I IA++RDESDR+G R+V+E+KR Sbjct: 250 AAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIVVEVKR 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + +V+LN LY+ T +Q+ F + ++A+ +P +L ++ F+ R EVV RRT + Sbjct: 310 DDNPEVLLNLLYKLTQMQTSFGIILLAIVHNRPRILSLREMIDCFIEHRAEVVTRRTNFE 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ LD V+ +IR S P A++ LM+ ++ ++ ++L Sbjct: 370 LKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLARLEL--- 426 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 +G D ++LSE+Q +AILE+RL RLTGL RD I +E + I +IL+S Sbjct: 427 -PRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILASDRE 485 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 + II EL ++D+ RR+ I + D+ ED I+ E+MVVT+SH GY+KR + +Y Sbjct: 486 IFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSAVDLY 545 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+QRRGGKG++G+ R+EDFV LFI ST +L F+ G +Y KV+ +P G+ +GK Sbjct: 546 RSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRTTKGK 605 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N++++ E+ITTI+P E + ++ AT++G V++ L ++ + G IA+ Sbjct: 606 AVVNLVNVGMEEKITTILPVKE---FSEHTFLFMATRNGVVKKTPLIEYSNVRSGGIIAV 662 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D+++ V D+ L ++ G+ +RF +R GR + GVRG++L + D VI Sbjct: 663 NLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSM-GRVTRGVRGMNLNEDDHVI 721 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M IV H D + G T Sbjct: 722 GMEIV-HND-------------------VVGST--------------------------- 734 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 I TV E G+GKRT ++R +R GKGI + N G++V V V++++ ++++ Sbjct: 735 ---IFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN--GSVVNVMQVSNDNDLMVI 789 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +D G ++RVPV+ + R T+GV + +T + E+VV+V R+ E E DE E TE Sbjct: 790 TDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVARLAEKEEDDENEGTE 843 >gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii] gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii] Length = 820 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/897 (45%), Positives = 565/897 (62%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL GM +MG+ N+ Y K A Sbjct: 7 LGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GE+MG YHPHG++AIYD L RMAQ++++R +L++GQGN+GS+DGD AA RYTE RL Sbjct: 67 KIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF PNYD S EP+VL +R PN+LVNG GGIAVG ATNIPTHNL Sbjct: 127 TKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPTHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++G + +++NP++ + LM+ I GPDFPT I G +GIK+AY TGRG + +R Sbjct: 187 GEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTVRAKVA 246 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE DRE++++TEIPYQVNK+ ++EKIA+L +E R+ I+D+RDESDR+G RVVIEL Sbjct: 247 IETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRVVIEL 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR V+LN LY+++ LQ+ F VNM+AL +PE L IL+AFV R EVVVRRT Sbjct: 307 KRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVVVRRTA 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA+ NLD V+ +IR S +P+ AR LMQ+ Sbjct: 367 YDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQ-------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q AILE+RL RLT L RD + E + I+ +L S Sbjct: 413 ------------FRLSEIQANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II+ EL +K++ RRT+IV+ ++ ED I E++VVT+SH GY+KR ++ Sbjct: 461 ALVRKIIRDELTEIKEKYQDERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIKRNAVT 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YRAQRRGGKG+ + +++EDFV LF STH S+LFF+ G VY KV +P S A+ Sbjct: 521 LYRAQRRGGKGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAK 580 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKAL+N+L+L++ E++T +P E + + +V+ TK G +++ +LS + + G I Sbjct: 581 GKALVNLLALSKDEKVTATLPVKEYRA---DRFVIMGTKQGVIKKTELSAYSNPRQGGII 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD+ D+++ V+ + +ILL TK G +RF +R GR + GVRGI+L GD+ Sbjct: 638 ALSLDAGDKLIGVDLTDGQREILLGTKQGITIRFKEEDVRAM-GRTAHGVRGITLEPGDE 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M E IT DS+ Sbjct: 697 VIGM-------------------------------ETITP---DSTTA------------ 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ILTV+E G+GKRT ++R+ R GKGI + ++ N G V V D D+I+ Sbjct: 711 -----ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERN--GPAVGFLQVRDEDEIM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERI--RESEIVDEAES 908 L++ +G ++R V++IR R T+GV + DE RVV+V R+ RE + +E ES Sbjct: 764 LMAAQGKVLRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEGES 820 >gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] Length = 885 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/905 (43%), Positives = 556/905 (61%), Gaps = 77/905 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ NP+ +D LMEII PDFPT +I G G+K+ Y TGRG +V+R H E Sbjct: 191 VDACLHMLRNPETSIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAKCHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLIVVFLQHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 KARDR HVL GLA+A+AN+D+ + IIR +P P A+ ELM RSW++ +++++ Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKLVREMLTRTRAD 430 Query: 435 ------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DD + +G DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKEVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ R+ II +EL S+K E RR+ I D+ ED I D Sbjct: 491 AVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRSIIEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L GE+I ++P D S+ + +V T G Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRFVFMGTSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPL 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRG+ L G VI+M L++ D Sbjct: 731 -GRAARGVRGMMLEDGQSVIAM-------------------------LVAED-------- 756 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + Q +LT +E G+GKRTS ++ R KG+ A S+ N Sbjct: 757 -------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + + ++ ++R Sbjct: 798 --GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDEGSKLSGLQR 855 Query: 897 IRESE 901 I E++ Sbjct: 856 IVEND 860 >gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4] gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4] Length = 832 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/881 (45%), Positives = 550/881 (62%), Gaps = 83/881 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR+ Sbjct: 9 AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 68 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YD L RMAQD+SLR L++GQGNFGS+DGD PAA RYTE R+ + Sbjct: 69 VGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMYQ 128 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 AH LL DL K+TV+ PNYD S QEP+VL A++PN+LVNG GIAVGMATNIP HNL E Sbjct: 129 LAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLSE 188 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG +AVI NP + + L+E+I GPDFPT I GR GI +AY TGRG I +R + IE Sbjct: 189 VIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAMIE 248 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +R+ IVVTEIPYQVNKA ++EKIAELVREK+I I+DLRDESDR+G R+VIELK+ Sbjct: 249 THKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIELKK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + ++LN LY+ T +QS F + M+A+ +P TL + F+ R E+V RRT + Sbjct: 309 DENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRTIFD 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ NLDEV+ +I+ S +P A+ LM R Sbjct: 369 LKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSR---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AIL++RL RLTGL RD I E + I +IL+S + Sbjct: 413 ----------FGLSEIQAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETE 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L II EL +KD+ RRT IV ++ ED IV EDMVVT+SH GY+KR +++Y Sbjct: 463 ILNIIVGELRELKDKFGDKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTLY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG++G+ ++EDFV LFI S+ ++FF+ G VY KV+ +P RGK Sbjct: 523 RAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGK 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N+L+L+ E+IT I+P E + + +++ AT++G V++ L ++ G IA+ Sbjct: 583 AIVNLLNLSTNEKITAILPVKEFTA---DKFIMMATRNGVVKKTPLLEYSHPRVGGIIAV 639 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD D++++V D+LL +K G+ +RF S +R GR S GVRG++L D VI Sbjct: 640 NLDEGDKLITVALTDGRQDVLLASKNGKSIRFKESDVRT-VGRVSRGVRGMTLEDDDVVI 698 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M I+ E T DS+ Sbjct: 699 GMEIL---------------------------NENFT----DST---------------- 711 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + TV+E GFGKRT ++R +R GKG+ ++ N G +V + V D + ++L+ Sbjct: 712 ---LFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERN--GCVVDIKQVTDENDLMLI 766 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +D+G ++RVPV I R T+GV + T +ER+V+V R+ Sbjct: 767 TDQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARL 807 >gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 864 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/895 (42%), Positives = 565/895 (63%), Gaps = 68/895 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R+Q Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDN + ++ L++ I PDFPTG+ I G GI AY TGRG +++R + I Sbjct: 189 EVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QIV+TEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I +D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS S L+ ++K+EL+ ++D R++ I+ LD+ ED I EDMVVT+S G Sbjct: 489 LIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L++ ERIT +MP E W YV +TK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHDNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V++++ I++++D GTL+R +++R R+ +GV + + +E+++S++ +++ + Sbjct: 791 VDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + LG VK+V LS + R GK G + D D ++ + + + ++ FS G Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIG--LNDGDELSYVALTDGNKQIMMFSDAG-- 702 Query: 599 YKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 K R +A G++ + + L+ ++I +++ DE V+ AT++G Sbjct: 703 ---KAIRFDESDVRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEG-----VVLAATENGY 754 Query: 657 VRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S++ + R+ G IA+ R+ +++ + DI++ T G VR + Sbjct: 755 GKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQV 814 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 R GR++ GVR I+L +++IS+ +V D + Sbjct: 815 RE-CGRSAQGVRLINLRNNEKLISLKVVKQEDEE 847 >gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. B100] gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris] Length = 899 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/909 (44%), Positives = 582/909 (64%), Gaps = 37/909 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR L+++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D + +G S+G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRGI LAKG++V+S+ + A DE ++ SA+ + + D E + D + Sbjct: 719 GVRGIRLAKGEEVVSLIVSERAGGVEDE----VEDESAEEVVETTDGAEPAVI--DVADN 772 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G+++ +ILT +E G+GKRT ++ R +G+ ++ N G LV Sbjct: 773 GDVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900 + D+++L+SD GTL+R +EI R T+GV + +K E++ +VER+ S Sbjct: 819 RAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE 878 Query: 901 ---EIVDEA 906 ++VDEA Sbjct: 879 EPEDVVDEA 887 >gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54] Length = 889 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/902 (43%), Positives = 552/902 (61%), Gaps = 84/902 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ + NP +D LMEII PDFPTG VI G +G++ Y TGRG +++R +H E Sbjct: 191 VDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIYGMSGVREGYRTGRGRVIMRAKTHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ IVV IPYQVNK + E+IAELV +K+I I+D+RDESD+ G R+VIELKRG Sbjct: 251 MEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +N+VAL +P L ++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREVVTRRTVFQL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+D+ + II+ +P P AR+ELM +SW++S +++++ D Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVREMLSRADGD 430 Query: 438 S---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + DG LS+ Q + IL +RL RLTGL +D I E + Sbjct: 431 TPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKDIMS 490 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDM 538 I + LDIL+ R+ II +EL ++K E T RR+ I +++ ED I DM Sbjct: 491 TIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITPTDM 550 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT+SH GY+K PLS YR+Q+RGG+G+ M++ D++ LFI +TH +L FS+ G V Sbjct: 551 VVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRV 610 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y KVW +P G+ +RGK ++N+ L +GE+IT ++P F ED YV AT G Sbjct: 611 YWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDH------YVFMATSRG 664 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LSDF ++G IA+ LD D ++ + ++D++L + G+ VRF + +R Sbjct: 665 TVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRP 724 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRG+ L VI++ L++GD Sbjct: 725 M-GRNARGVRGMMLEDTQNVIAL-------------------------LVAGD------- 751 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 + Q +LT +E G+GKRT ++ R KG+ A S Sbjct: 752 --------------------ETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSR 791 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G +V V +D+I+L++ G L+R V EIR RAT+GV + + + V Sbjct: 792 N--GKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGSSLSGVR 849 Query: 896 RI 897 R+ Sbjct: 850 RV 851 >gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 878 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/901 (44%), Positives = 564/901 (62%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA D V+S+ I A I + +R G+ +G IS Sbjct: 724 IKLAGEDSVVSLIIPRGEGA-----ILTVTQNGYGKRTAEGEYP-----TKSRGTQGVIS 773 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++ R+G + A V ++I Sbjct: 774 ------------------------------IKVTERNGSVVGAVQVDDADQI-------- 795 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 796 -------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] Length = 908 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/914 (43%), Positives = 567/914 (62%), Gaps = 90/914 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A+IDN ++ + ++E I GPDFPT +I GR GI+ AY TGRG I IR Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRAR 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I+ +T+G +E I+V E+PYQVNKA ++EK+AELV++KR+ I+ LRDESD+ G R+V Sbjct: 246 ASIDVHETTG-KETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KRG +V+LN LY+ T +Q F +NMVAL +P+ F + +L+AFV R EVV R Sbjct: 305 IEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KARDRAH+L GL+IA+AN+D ++ +I+ S N + + +L+ + W ++ +++ Sbjct: 365 RTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANML 424 Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + Y I DG YL+ Q +AI++L+L +L+G+ D I +E +L Sbjct: 425 SEAGNDAARPEWLEPEYGI-RDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLD 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E + IL++ +RL+ +I +EL++++DE RRT I D+ ED I ED+VVT+ Sbjct: 484 LIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLITEEDVVVTL 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK LS Y AQRRGGKG++ M++EDF+ L + +TH ++L FS G +Y K Sbjct: 544 SHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLYWLK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP+ S ARG+ ++NIL L ERIT I+P ++ Y+V AT G V++ +L Sbjct: 604 VFQLPLASRTARGRPIVNILPLESDERITAILPV---RDYADDKYIVMATASGTVKKTRL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF-------------- 708 + +G IA+ L D ++ V+ ND++L + G+ VRF Sbjct: 661 DAYSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKL 720 Query: 709 -PISAIRVFA----GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 P + + +A GR GVRGI L +V+S+ I Sbjct: 721 DPETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLIIP---------------------- 758 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 KND ILT++E GFGKRT ++ +R+ Sbjct: 759 ------------KNDGP-------------------ILTITENGFGKRTDLAEYPAKSRA 787 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 KG+ + VS+ N G +V V D D+I+L++D GTL+R VNE+ + R T+GV + Sbjct: 788 TKGVVSIKVSERN--GKVVGAVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLI 845 Query: 884 STAKDERVVSVERI 897 TA DE VV+++RI Sbjct: 846 RTADDEHVVALQRI 859 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EIT+ +D S+E I+EE ++T+S +G+ K D+ R GKG AT Sbjct: 520 EITNASHDLSLEDLITEE---------DVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAAT 570 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887 K+ E + + N +D I+ SD+G L + V ++ +ASR +G V I Sbjct: 571 ---KMKEEDFIERLLVANTHDTILCFSDRGKLYWLKVFQLPLASRTARGRPIVNILPLES 627 Query: 888 DERVVSVERIRE 899 DER+ ++ +R+ Sbjct: 628 DERITAILPVRD 639 >gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] Length = 851 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD AA RYTE R+ K H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDG+ +P VL +R PN+L+NG GIAVGMATNIP HNL EVVD C Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++N + +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM + W++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + ++ + +DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I EL SVK E RR+RI ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L +GE+I ++P E + + +V AT G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFSA---DKFVFMATSLGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI++ L++G Sbjct: 717 MQLEDGQQVIAL-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ ++++ Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833 >gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] Length = 811 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/893 (43%), Positives = 565/893 (63%), Gaps = 88/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I I+ EM++SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 4 EENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDKP 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 64 YRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGMAT+I Sbjct: 124 TEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATSI 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE +D V +IDNPD D+D LM+ I+GPDFPTGA+I+G+ I AY TGRG + + Sbjct: 184 PPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKVKV 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QIVVTEIPYQVNKA ++E+IAELV++KRI I+DLRDES+R G R+ Sbjct: 244 RSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGMRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR +A+++LN LY+++ L+ FS+ M++L P L IL +V +++VV Sbjct: 304 VIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA+ RAH+L GL IA+ +DEV+ +IR S N + A+ LM + Sbjct: 364 RRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDK---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL +LTGL R+ + E N L +I+ I Sbjct: 414 ----------------FKLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LLG+IK E+L +K + RRT I EG +D+ +D I E++ +T++H GY+ Sbjct: 458 LADEQLLLGVIKDEILEIKKKYSDARRTEIRHAEGEIDI--KDLIDDEEITITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++QRRGG+G S + +R+EDFV L TH +LFF++ G V++ + +P Sbjct: 516 KRLPLDTYKSQRRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L E+I T++ D + ++ Y++ ATK G V++ K S+F I Sbjct: 576 GKRQAKGTAIVNLLQLGPNEKIATLIEV--DGRADDDSYLLLATKKGIVKKTKRSEFKNI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ V+T E D+LL T G +RF IR GR ++GV+GI+ Sbjct: 634 NKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPM-GRTAMGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L++GD+V+SM++ S EG Sbjct: 693 LSEGDKVVSMSL---------------------------------------SDEG----- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + +L VS+ G+GKRT ++R R+GKGI+ ++S+ + G +V VN Sbjct: 709 ---------EDLLVVSQNGYGKRTDINEYRSQIRAGKGIKTYNMSE--KTGEIVGATMVN 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + D+++L++ G LIR+ V++I + R T GV + T + VVS+ +I E Sbjct: 758 NEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKTDDEVNVVSIAKIDTEE 810 >gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895] gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895] Length = 878 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/901 (44%), Positives = 564/901 (62%), Gaps = 70/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 KEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA D V+S+ I A I + +R G+ +G IS Sbjct: 724 IKLAGEDSVVSLIIPRGEGA-----ILTVTQNGYGKRTAEGEYP-----TKSRGTQGVIS 773 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++ R+G + A V ++I Sbjct: 774 ------------------------------IKVTERNGSVVGAVQVDDADQI-------- 795 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ +E VD+ Sbjct: 796 -------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV--AEPVDDE 846 Query: 907 E 907 E Sbjct: 847 E 847 >gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] Length = 850 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + DD Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G +G YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +IN+L L + E+I+ I+P + S +V AT G +++ L++F Q GKIA Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L V Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I++ +V +GN Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +SDKGTL+R VNEI R T+GV + ++DE +V +E I +E+++E Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847 >gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY] gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY] Length = 877 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/909 (43%), Positives = 558/909 (61%), Gaps = 89/909 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ PD +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L ++K F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIKVFLQHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----- 432 KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTRAD 430 Query: 433 --LIDDSSY-------TIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ Y G DG +Y LS+ Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ +R+ II +EL +++ E RR+ I D+ ED I D Sbjct: 491 SVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I ++P FP D YV Sbjct: 611 LYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADH------YVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 ATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GVRG+ L G VI+M L++ D Sbjct: 725 NDVRPL-GRQARGVRGMMLEDGQSVIAM-------------------------LVAED-- 756 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 757 -------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAI 791 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + + Sbjct: 792 QQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAK 849 Query: 891 VVSVERIRE 899 + ++RI E Sbjct: 850 LSGLQRIVE 858 >gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15] Length = 873 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/904 (44%), Positives = 566/904 (62%), Gaps = 81/904 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A+IDNPD+ +D LME I GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRIYIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+ I++LRDES+++G RVVI Sbjct: 246 HEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG + DV++N L+ T L+++F +NMV L +P+ L +L AFV R EVV RR Sbjct: 306 ELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGEPKTLNLKQLLDAFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+ A+ +L+ + W+ D+ +++ Sbjct: 366 TIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMAMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD G +G +LS Q +AIL+LRL RLTGL + ++NE + +I Sbjct: 426 RAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEILDKI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL RLL +I++EL ++ E RRT I D+ D I ED+VVT+SH Sbjct: 486 ADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVVTISH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K + Y+AQRRGG+G++ M+DEDFV L + ++H ++L FS+ G VY +V+ Sbjct: 546 SGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWLRVF 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +P S +RG+ ++NIL L++GERITT +P +PED+ +V+ AT G V++ Sbjct: 606 EIPRASRASRGRPMVNILPLDEGERITTFLPVRDYPEDQ------FVLMATSAGVVKKTP 659 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L +F + SG IA+ LD D ++ + +++L + G+ VRF N Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRF-----------NE 708 Query: 722 VGVRGIS-LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--KND 778 VR +S A+G + I M H + SL D Sbjct: 709 EAVRPMSRTARGVRGIKMPQGHH----------------------------VVSLIIPQD 740 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 V ILT SE G+GKRT+ +F +R +G+ A S+ N Sbjct: 741 GGV------------------ILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERN-- 780 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERI 897 G LV + D D+++L+SDKGTL+R +E+ + SR T+GV +I + +DER+V VERI Sbjct: 781 GNLVTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERI 840 Query: 898 RESE 901 E++ Sbjct: 841 AETD 844 >gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] Length = 854 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/873 (44%), Positives = 551/873 (63%), Gaps = 86/873 (9%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Y K ARI GEV+G Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIG 76 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD AA RYTE RL K A +L Sbjct: 77 KYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEML 136 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL K+TVDF PNYDG EPVVL ARYPN+LVNG GGIAVGMATNIP HNLGEV+DG Sbjct: 137 RDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQ 196 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 A+I+NPDI LM+ I+GPDFPT ILGR+GI+ AY TGRGS+ +R + IE+ G++ Sbjct: 197 ALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAKTTIEEI-GNK 255 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 +I+V E+PYQVNKA ++EKIAELVR+KRI I DLRDESDR G RVVIEL+R + +V+ Sbjct: 256 ARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVVIELRRDVNPNVV 315 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN L+++T++QS F +NM+A+ +P+ L +L ++ + EV+ RRT++ L KA R Sbjct: 316 LNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVIRRRTEFDLKKAEAR 375 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 376 AHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIER----------------------- 412 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 L+ Q++AIL++RL RLTGL R+ I NE N L +I E +IL++ +L II + Sbjct: 413 ---FSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYREILANEHLVLNIISE 469 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 EL +K+ RRT I G + DED I RED+++TV+H GY+KR+P++ YR+Q+RGG Sbjct: 470 ELNELKERFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGG 529 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ +DEDFV LFI ++H +LFF+ G VY+ K + +P S ARG +IN++ Sbjct: 530 RGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQ 589 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 + QGE I ++P E + Y+ FAT+HG +++ L D+ I + G IA+ L D Sbjct: 590 IEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++ V+ + ++++ T G +RFP S +R GR++ GV+GI+L + D VI M IV Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGINLDESDAVIGMDIV-- 703 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 D+S++ IL V Sbjct: 704 ----------------------------------DTSLD-----------------ILIV 712 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 + KG+GKRT D+RI +R GKGI+ +V+ N G +V + V + +++++ GTLI Sbjct: 713 TAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKTEEDLMIITASGTLI 770 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 R + EI R T+GV + + D+ V +V R Sbjct: 771 RTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803 >gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] Length = 850 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + DD Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G +G YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +IN+L L + E+I+ I+P + S +V AT G +++ L++F Q GKIA Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L V Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I++ +V +GN Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +SDKGTL+R VNEI R T+GV + ++DE +V +E I +E+++E Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847 >gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42] gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42] Length = 888 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/911 (42%), Positives = 557/911 (61%), Gaps = 89/911 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 22 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 81 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 82 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 141 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG GIAVGMATNIP HNL EV Sbjct: 142 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 201 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ PD +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 202 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVVMRAKCHFED 261 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G R+VIELKRG Sbjct: 262 IDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKRG 321 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 322 EVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIEVFLQHRREVVTRRTVFEL 381 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+R HVL GLA+A+AN+DE +RIIR SP P A+ ELM RSW++ +++++ Sbjct: 382 RKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTRAD 441 Query: 438 SYTIGSD---------------GTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + +D G +Y LS+ Q + IL++RL RLTGL +D I E + Sbjct: 442 GGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKDVM 501 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ +R+ II +EL +++ E RR+ I D+ ED I D Sbjct: 502 SVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLSTEDLITPTD 561 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 562 MVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILCFSNRGR 621 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I ++P FP D YV Sbjct: 622 LYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADH------YVFM 675 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L +F + G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 676 ATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVRFDE 735 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GVRG+ L G VI+M L++ D Sbjct: 736 NDVRPL-GRQARGVRGMMLEDGQSVIAM-------------------------LVAED-- 767 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + Q +LT +E G+GKRTS ++ R KG+ A Sbjct: 768 -------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAI 802 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + + Sbjct: 803 QQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAK 860 Query: 891 VVSVERIRESE 901 + ++RI E++ Sbjct: 861 LSGLQRIVEND 871 >gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 864 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/895 (42%), Positives = 564/895 (63%), Gaps = 68/895 (7%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 +S++I E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ Y K AR Sbjct: 9 SSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A+YD + RMAQ +SLR L++GQGNFGSVDGD PAA RYTE R+Q Sbjct: 69 VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQ 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K H LL D+ K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HN+ Sbjct: 129 KLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A+IDN + ++ L++ I PDFPTG+ I G GI AY TGRG +++R I Sbjct: 189 EVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKVDI 248 Query: 257 -EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E + + QIV+TEIPYQVNKA ++EKIAELV++K++ I++LRDESD+ G RVVI+LK Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S +V+LN LY T LQ F +NMVAL+ +P+ L IL+ F+ R+EVV RRT + Sbjct: 309 RDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K+++RAH+L GL +++AN+DE++ +I+ SP+P A+ ++ RSWN S +K +++ +D Sbjct: 369 ELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEGVD 428 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 S Y I +D + L+E Q AIL LRL RLTGL +D I NE L IK Sbjct: 429 VKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKY 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 + ILS S L+ ++K+EL+ ++D R++ I+ LD+ ED I EDMVVT+S G Sbjct: 489 LIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVTLSMDG 548 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS+Y AQ+RGG G+S ++ED + L + STH ++L FSSLG VY KV+ Sbjct: 549 YVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDF 608 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P+ S ++G+ + NIL L++ ERIT +MP E W YV +TK G V++ LS+F Sbjct: 609 PVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVDLSEFA 665 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +GKIA+ L+ DE+ V I++ + G+ +RF S +R GR++ GV G Sbjct: 666 RPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTG 724 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +++S+ IV + D Sbjct: 725 MRLHDNQKIVSV-IVTNPD----------------------------------------- 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +E G+GKRT+ ++R + R+ +G+ A S+ N G +V Sbjct: 743 ----------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVL 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V++++ I++++D GTL+R +++R R+ +GV + + +E+++S++ +++ + Sbjct: 791 VDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 18/214 (8%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V + LG VK+V LS + R GK G + D D ++ + + + ++ FS G Sbjct: 647 VFMSTKLGRVKKVDLSEFARPRSTGKIAIG--LNDGDELSYVALTDGNKQIMMFSDAG-- 702 Query: 599 YKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 K R +A G++ + + L+ ++I +++ DE V+ AT++G Sbjct: 703 ---KAIRFDESDVRAMGRSAAGVTGMRLHDNQKIVSVIVTNPDEG-----VVLAATENGY 754 Query: 657 VRRNKLSDFIQINRS--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R +S++ + R+ G IA+ R+ +++ + DI++ T G VR + Sbjct: 755 GKRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQV 814 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 R GR++ GVR I+L +++IS+ +V D + Sbjct: 815 RE-CGRSAQGVRLINLRNNEKLISLKVVKQEDEE 847 >gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] Length = 848 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + DD Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPDDL 436 Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G +G YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S Sbjct: 437 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Sbjct: 496 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG Sbjct: 556 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 615 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +IN+L L + E+I+ I+P + S +V AT G +++ L++F Q GKIA Sbjct: 616 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 672 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L V Sbjct: 673 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I++ +V +GN Sbjct: 732 IALIVV--------------------------------------KPKGN----------- 742 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L Sbjct: 743 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 796 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +SDKGTL+R VNEI R T+GV + ++DE +V +E I +E+++E Sbjct: 797 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 845 >gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44] gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44] Length = 898 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/916 (42%), Positives = 563/916 (61%), Gaps = 80/916 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ ++ NP+ +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ +++++ Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430 Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + +D G LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ R+ II +EL +VK E RR+ + D+ ED I D Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L +GE+I ++P FPED +V Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDH------FVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GRN+ GVRG+++ + VI+M + A+AD +++G Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 Q +LT +E G+GKRT+ ++ R KG+ A Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + + + Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDEGAK 858 Query: 891 VVSVERIRESEIVDEA 906 ++ ++RI E++ D A Sbjct: 859 LIGLQRIVENDANDNA 874 >gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] Length = 898 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/916 (42%), Positives = 561/916 (61%), Gaps = 80/916 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDGC+ ++ NPD +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT + L Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREVVTRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KARDR HVL GLA+A+AN+D+ + IIR +P P A+ LM++SW++ +++++ Sbjct: 371 RKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVREMLTRTRTD 430 Query: 438 SYTIGSD----------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + +D G LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDIM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCIVRED 537 I++ LDIL+ R+ II +EL +VK E RR+ + D+ ED I D Sbjct: 491 SVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDYLLCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVF 650 +Y KVW +P GS +RG+ ++N+ L GE+I ++P FPED YV Sbjct: 611 MYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRSFPEDH------YVFM 664 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF Sbjct: 665 ATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDE 724 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GRN+ GVRG+++ + VI+M + A+AD +++G Sbjct: 725 NDVRPM-GRNARGVRGMNIEEHQNVIAMLV---AEAD-----------DGTGNVVAG--- 766 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 Q +LT +E G+GKRT+ ++ R KG+ A Sbjct: 767 --------------------------SQSVLTATENGYGKRTAISEYTRHGRGTKGMIAI 800 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 S+ N G +VA V D+I+L++D G L+R V EIR RAT+GV + + + Sbjct: 801 QQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDAGAK 858 Query: 891 VVSVERIRESEIVDEA 906 ++ ++RI E++ D A Sbjct: 859 LIGLQRIVENDANDGA 874 >gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] Length = 848 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 561/890 (63%), Gaps = 70/890 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + DD Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 436 Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G +G YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S Sbjct: 437 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 495 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Sbjct: 496 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 555 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG Sbjct: 556 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 615 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +IN+L L + E+I+ I+P + S +V AT G +++ L++F Q GKIA Sbjct: 616 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 672 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L V Sbjct: 673 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 731 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I++ +V +GN Sbjct: 732 IALIVV--------------------------------------KPKGN----------- 742 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L Sbjct: 743 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 796 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +SDKGTL+R VNEI R T+GV + ++DE +V +E I +E+++E Sbjct: 797 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 845 >gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4] Length = 850 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/891 (43%), Positives = 553/891 (62%), Gaps = 76/891 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K ARI G+V+GK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ + H LL Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYDGS +P++L +R PN+L+NG GIAVGMATNIP HNL EVVD C+ Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDR 263 +++NP +D L+EII PDFPT +I G G+++ Y TGRG +V+R +H E+ G R Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 I+V E+PYQVNK ++LE+IAELV EK++ I+D+RDESD+ G RVVIELKRG +V+ Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+ T LQ F +NMVAL +P+ L IL+ F++ R EV+ RRT Y L KAR+R Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435 HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++S +++++ + Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAAGG 420 Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 ++ + DG LS+ Q + IL++RL RLTGL +D I E + +I + Sbjct: 421 RAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 LDIL+ R+ +I +EL +VK E RR++I ++ ED I +DMVVT+SH G Sbjct: 481 LLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS YRAQ+RGG+G+ M+++D++ LFI +TH +L FS+ G VY KV+ + Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS +RG+ ++N+ L GE+I ++P E + + YV T G V++ L F Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFSA---DKYVFMTTALGTVKKTPLEAFS 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G IA+ LD D ++ +D++L + G+ VRF + +R GR + GVRG Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L G QVI+M L++G Sbjct: 717 MQLDDGQQVIAM-------------------------LVAGS------------------ 733 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +EQ +LT +E G+GKRT ++ R KG+ A S+ N G +VA Sbjct: 734 ---------EEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ DQI+L++ G LIR V+EIR RAT+GV + S + ++ +++I Sbjct: 783 VDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833 >gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2] gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2] Length = 854 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/873 (44%), Positives = 548/873 (62%), Gaps = 86/873 (9%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Y K ARI GEV+G Sbjct: 17 EMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIG 76 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD AA RYTE RL K A +L Sbjct: 77 KYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEML 136 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL K+TVDF PNYDG EPVVL ARYPN+LVNG GGIAVGMATNIP HNLGEV+DG Sbjct: 137 RDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQ 196 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 A+I+NPDI LM+ I+GPDFPT ILGR+GI+ AY TGRGS+ +R + IE+ G++ Sbjct: 197 ALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVTMRAKTTIEEI-GNK 255 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 +I+V E+PYQVNKA ++EKIAELVR+KRI I DLRDESDR G R+VIEL+R + +V+ Sbjct: 256 ARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIVIELRRDVNPNVV 315 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN L+++T++QS F +NM+A+ +P+ L +L ++ + EV+ RRT++ L KA R Sbjct: 316 LNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVIRRRTEFDLKKAEAR 375 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 376 AHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIER----------------------- 412 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 L+ Q +AIL++RL RLTGL R+ I NE N L +I E +IL++ +L II + Sbjct: 413 ---FSLTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYREILANEHLVLNIISE 469 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 EL +K RRT I G + DED I RED+++TV+H GY+KR+P++ YR+Q+RGG Sbjct: 470 ELNELKGRFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGG 529 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ +DEDFV LFI ++H +LFF+ G VY+ K + +P S ARG +IN++ Sbjct: 530 RGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQ 589 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 + QGE I ++P E + Y+ FAT+HG +++ L D+ I + G IA+ L D Sbjct: 590 IEQGESINAVIPI---EEFVEDSYLFFATQHGIIKKTPLDDYANIRKGGLIAINLREDDA 646 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++ V+ + ++++ T G +RFP S +R GR++ GV+GISL + D VI M IV Sbjct: 647 LIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGISLDESDAVIGMDIV-- 703 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + D D IL V Sbjct: 704 -NTDLD--------------------------------------------------ILIV 712 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 + KG+GKRT + D+RI +R GKGI+ +V+ N G +V + V + +++++ GTLI Sbjct: 713 TAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKAEEDLMIITASGTLI 770 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 R + EI R T+GV + + D+ V +V R Sbjct: 771 RTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803 >gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] Length = 929 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/893 (44%), Positives = 562/893 (62%), Gaps = 92/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + G+T++ I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+ +K Sbjct: 67 EPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKESGITHDK 126 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+AA+YD++ RM QD+SLR LI+GQGNFGS+DGD AA R Sbjct: 127 PYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDGDEAAAMR 186 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+ K+TV FRPNYDGS +EP VL A+ PN+L+NG GIAVGMATN Sbjct: 187 YTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGIAVGMATN 246 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HN+ EV+DG + +IDNP+ + LM +++GPDFPTGA ILG GI++AY TGRG + Sbjct: 247 MAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAYTTGRGPVK 306 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR V+ I++ DREQI+VTE+PYQVNKA M+E IA+LVREK I I+DLRDESDR+G R Sbjct: 307 IRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDESDREGIR 366 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL +G +A V+LNQLY++T +++ F V +AL KP+ L +L+ ++ +R E+V Sbjct: 367 VVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIYLEYRMEIV 426 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RT Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + AR+ LM Sbjct: 427 QKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLM----------- 475 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++T L EVQ +AIL++RL RLTGL I EL +L I E Sbjct: 476 -------DNFT--------LDEVQAKAILDMRLQRLTGLETKKILEELENLIKLIAELKK 520 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL S II+ ELL +K++ RRT+IV ++ DED I D+VVT+++ GY+K Sbjct: 521 ILESDELKYEIIRTELLGLKEKYGDVRRTKIVHYTEEVTDEDLIPEADVVVTITNSGYIK 580 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PL Y QRRGG+G G+ M++EDFV +LFI STH +LFF++ G +Y +KV+ +P G Sbjct: 581 RIPLDTYSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEG 640 Query: 610 SPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 S Q+RGKA++N+L L +GE + ++P F ED Y++ AT+ G ++ LS+F Sbjct: 641 SRQSRGKAIVNLLELREGEMVNAMIPVKEFAEDR------YLLMATRAGTTKKTPLSEFR 694 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++G IA+ LD DE++ V + ++L+ +K G+ +RF +R GR + GVRG Sbjct: 695 NPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPM-GRTARGVRG 753 Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L D+V+SM +V +E T+L Sbjct: 754 MILDGPEDEVVSMDLV----------------------------DETTTL---------- 775 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L+V+E GFGKRT + + R GKG+ T V+ + G + V Sbjct: 776 ---------------LSVTENGFGKRTEYSQYPMHRRGGKGV-ITIVTNLRN-GFVANVK 818 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V ++D++++ S +G +IRVP +I I R T+GV I + ++VV + RI+ Sbjct: 819 SVAEDDELMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKSGDKVVGMARIK 871 >gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 894 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/896 (43%), Positives = 551/896 (61%), Gaps = 89/896 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH LL DL K+TVDF PNYDGS EP+V+ R PN+LVNG GGIAVGMATNIP H Sbjct: 126 RLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP+ +D LM+II PDFPT +I G G+K+ Y TGRG +V+R Sbjct: 186 NLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVVMRAR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 CHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLNHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ +RIIR SP P A+ ELM R W++ +++++ Sbjct: 366 TVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKLVREMLT 425 Query: 433 LI---------DD-------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 DD + +G+DG LSE Q + IL++RL RLTGL +D I E Sbjct: 426 RTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDC 532 + EI++ LDIL+ +R+ II +EL VK E RR+ + D+ ED Sbjct: 486 YKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVEHSSFDLSTEDL 545 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PL YRAQ+RGG+G+ +++D+V LF+ +TH +L F Sbjct: 546 ITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDYILCF 605 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNN 645 S+ G +Y KVW +P GS +RG+ ++N+ L +GE+IT ++ FP D+ Sbjct: 606 SNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQ----- 660 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV +T G V++ L +F ++G IA+ LD D ++ ++D++L + G+ Sbjct: 661 -YVFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKA 719 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VRF + +R GRN+ GVRG+ L +G VI+M L+ Sbjct: 720 VRFDENDVRPM-GRNARGVRGMMLDEGQSVIAM-------------------------LV 753 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + D ++Q +LT +E G+GKRT+ ++ R K Sbjct: 754 AED---------------------------EQQSVLTATENGYGKRTNITEYTRHGRGTK 786 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 G+ A S+ N G +VA V+ D+I+L++DKG L+R V+EIR RAT+GV Sbjct: 787 GMIAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMGRATQGVT 840 >gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] Length = 850 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/890 (43%), Positives = 560/890 (62%), Gaps = 70/890 (7%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK K ARI G+V+GK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF PNYD + P VL R PN+L+NG GIAVGMATNIP HNL E+++ +A Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I+NPD++++ LM I GPDFPT +I GR GI AY TGRG I +R + IE T R Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IV E+PYQVNKA +LEKI ELVREKRI I+ LRDESD++G R+VIE+ RG +A+++L Sbjct: 259 LIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY T LQ++F +NMVAL+ +P L +L AF+ R EVV RRT + L KAR+RA Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDS 437 H+L GL +A+AN+DEV+ +I+ + P A+ L+ ++W + D + DD Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438 Query: 438 SYTIG--SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + G +G YLS Q +AIL+LRL RLTGL D IR E ++ +I+E + I+S Sbjct: 439 AAEFGLRKEG-YYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPD 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I++EL++VK++ RRT I++ D+ ED I E VVT+SH GY+K LS Sbjct: 498 KLHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSS 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ RGG+G+ ++++DFV ++ + ++H ++L FS+ G VY KV+++P GS ARG Sbjct: 558 YQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +IN+L L + E+I+ I+P + S +V AT G +++ L++F Q GKIA Sbjct: 618 RPIINLLPLVKDEQISAILPIRAYDGSH---FVFMATAQGAIKKVSLAEFSQPRTKGKIA 674 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ + +I+L T G+ +RF +R GR++ GVRGI L V Sbjct: 675 LALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNV 733 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I++ +V +GN Sbjct: 734 IALIVV--------------------------------------KPKGN----------- 744 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ILT + G+G+RT+ D+R + R G+G+ A ++ N G +V+ V D+D ++L Sbjct: 745 ----ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLL 798 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +SDKGTL+R VNEI R T+GV + ++DE +V +E I +E+++E Sbjct: 799 ISDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAI-SAELIEE 847 >gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4] gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4] Length = 846 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/900 (44%), Positives = 558/900 (62%), Gaps = 71/900 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + + V+I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Sbjct: 2 EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R L++GQGNFGS+DGDPPAA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K AH LL DL K+TVDF PNYD S EP VL R PN+L NG GIAVGMATN Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+ C+A+ID+P +D+ +M I GPDFPT ++ G GI+ AY TGRG I Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSRGIQEAYLTGRGRIF 241 Query: 250 IRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +R +H+E + SG R+ I+VTE+PY VNKA +LEKI ELV+EK+I I LRDESD++G Sbjct: 242 LRARTHVETDEASG-RQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+EL+R +V+LN LY +T LQ++F +NMVAL +P+ L L+AF+ R+E Sbjct: 301 MRMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQPQVLNLKLALEAFLRHRQE 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L KAR+RAHVL GLAIA+ N+D V+ +I+ S +P AR L+ RSW + Sbjct: 361 VVTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVV 420 Query: 428 KDLIDLID-DSSYTIG-------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 D++ +SS G +G LS Q +AIL++RL RLTGL + I +E Sbjct: 421 IDMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQ 480 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + I E L+IL++ RL+ +I++EL+ ++ + RRT I +D+ ED I E++V Sbjct: 481 VIELISELLEILANPERLMAVIREELVEMRQQYGELRRTEIQYNHVDLRLEDLIQEENVV 540 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+SH GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY Sbjct: 541 VTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVY 600 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 +KV+ LP G+ ARGK ++N+L L +GERI T++P E E YV T G V++ Sbjct: 601 WKKVYELPQGTRTARGKPIVNLLPLEEGERINTVLPIREFEEGK---YVFMVTASGVVKK 657 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L+ F + SG IA++L D+++ + E +I+L + G+ +RF +R GR Sbjct: 658 TSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFSEQKVRPM-GR 716 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV+G+ L +VI++ I + + Y K + Sbjct: 717 TARGVKGMELPPEHRVIALIIARNGTILTATELGYGKRTA-------------------- 756 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 I+E R Q R G+GI + + N G Sbjct: 757 -----IAEYRLQ-----------------------------GRGGQGIISIQTTPRN--G 780 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +V V + D+I+L++++GTLIR PV +I + R T+GV + + + ER+V VERI E Sbjct: 781 QVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEGERLVGVERIVE 840 >gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] Length = 809 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/890 (44%), Positives = 558/890 (62%), Gaps = 93/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKP+HRRIL+ M ++ + ++ + K A Sbjct: 8 VVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+VMGKYHPHG+AAIYDA+ R+AQD+S+R LI+G GNFGS+DGDPPAA RYTE RL Sbjct: 68 TIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG V +I+NPD+ LM I+GPDFPTG +ILGR GI+ Y TGRGSI++R + Sbjct: 188 SEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIVRAKAT 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G +++IVVTEIPY VNKA ++EKIAELVR+K + I+DLRDESDR G R+VIELK Sbjct: 248 IEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A VILNQLY++T +Q F M+AL KP+ TL ++ ++ ++EVVVRRTKY Sbjct: 308 RDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVVRRTKY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A +R H+L GL IA+ +LDEV+ +IR S + TAR LM+ Sbjct: 368 ELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMK---------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E Q + IL++RL RLT L R I +E L +I +L Sbjct: 412 ----------NFGLTEKQAQVILDMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEK 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK+ELL +K+ RRTRIV + D +++D I ED+V+T++++GYVKR+PLS Sbjct: 462 LVFAIIKEELLKIKERFGDERRTRIVAEVKDFDEQDLIPEEDVVITMTYMGYVKRMPLSS 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKG +G+ R+EDFV + + +TH VLFF++ G VY+ K +P A+G Sbjct: 522 YRSQKRGGKGVTGITTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKG 581 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 A++N+L L E++ ++P + E+S Y+V TK G V++ LS++ ++G I Sbjct: 582 TAIVNLLPLKPQEKVNAVIPIKDFGEAS----YLVMVTKRGLVKKTLLSEYESSRKTGII 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L S DE++ V+ ++++++L T G +RF + + GR + GV+ I+L +GD+ Sbjct: 638 AITLTSGDELIGVKLVGKKDELILGTSHGMSIRFSVEDV-TPTGRTARGVKAITLGEGDE 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V SM ++TS+ +D Sbjct: 697 VASM--------------------------------DVTSVGSD---------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVNDND 851 +L ++EKGFGKRT ++RI R G+GI R TD + G LV + V + D Sbjct: 709 -----VLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVTDTT-----GRLVGLRVVAEGD 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 IIL + G +IR+ V+ I SR T+GV + + ++V +V IRESE Sbjct: 759 DIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESE 808 >gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1] gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans] gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1] Length = 888 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/917 (42%), Positives = 562/917 (61%), Gaps = 80/917 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +H +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 SHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ P +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT Y L Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREVVTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431 KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVREMLTRTRTD 430 Query: 432 -------DLIDDS---SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 D D + + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 I++ LDILS R+ II EL +K E RR+ + D+ ED I D Sbjct: 491 SVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L GE+I ++P + S+ + YV +T G Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHYVFMSTSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GV+G++L +G VI+M L++ D Sbjct: 731 -GRNARGVKGMNLEEGQSVIAM-------------------------LVAED-------- 756 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + Q +LT +E G+GKRTS ++ R KG+ A S+ N Sbjct: 757 -------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + ++ ++R Sbjct: 798 --GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQR 855 Query: 897 IRE---SEIVDEAESTE 910 I E SE+ DEA E Sbjct: 856 IVENDASEVEDEATGEE 872 >gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707] gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707] gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] Length = 846 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/894 (44%), Positives = 551/894 (61%), Gaps = 71/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K A Sbjct: 8 VFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R LI+GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYD S EP VL R PN+L NG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ C+A+ID+P + + LM I GPDFPT ++ G GI+ AY TGRG I +R +H Sbjct: 188 GELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGARGIQEAYLTGRGRIFMRARTH 247 Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E G +Q I+VTE+PY VNKA +LEKI LV+EK+IV I LRDESD+ G R+V+EL Sbjct: 248 VETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGMRMVVEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R +V+LNQLY +T LQS+F +NMVAL +P+ L L+AF+ R+EVV RRT Sbjct: 308 RRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEAFLRHRQEVVTRRTM 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAHVL GLAIA+AN+D ++ +I+ S +P AR L+ R W + D++ Sbjct: 368 FELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVIDMLQRA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +++Y + DG LS Q +AILE+RL RLTGL + I +E + I I Sbjct: 428 GAESSQPEKLETAYGLQQDG-YRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQVIIFIL 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L+IL++ RL+ +I++E + ++++ TPRRT I + +D+ ED I E++VVT+SH Sbjct: 487 GLLEILANPERLMAVIREEFMEMREQYSTPRRTEIQDNHVDLRLEDLIQEENVVVTLSHS 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY K L YR+Q+RGGKG+S M++EDF+ LFI +TH ++L FSS G VY +KV+ Sbjct: 547 GYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYWKKVYE 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP GS ARGK +N+L L +GERI T++ E E + Y+ T G V++ L+DF Sbjct: 607 LPQGSRVARGKPFVNLLPLEEGERINTVLSIREFE---KDKYIFMVTASGVVKKTSLADF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + SG IA+ L D+++ + +I+L + G+ +RF +R GR + GV+ Sbjct: 664 SRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFSERDVRP-VGRTARGVK 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L +VI++ I + Y K + I Sbjct: 723 GMELPSEHRVIALIIAASGTILTATELGYGKRTA-------------------------I 757 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +E R Q R G+GI + + N G +V Sbjct: 758 AEYRLQ-----------------------------GRGGRGIISIRTTPRN--GEVVGAV 786 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D+++L+SD GTLIR PV+ I + R T+GV + + + ER+V +ERI E Sbjct: 787 QVEKEDEVVLISDGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840 >gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] Length = 837 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/884 (44%), Positives = 564/884 (63%), Gaps = 81/884 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +N+ ++K ARI Sbjct: 12 TISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARI 71 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YD L RMAQ +S+R L++GQGNFGSVDGDPPAA RYTE R+ + Sbjct: 72 VGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTR 131 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 L+ DL K+TVDF PNYD S EP+VL AR PN+L+NG GIAVGMATNIP HNL E Sbjct: 132 IDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLRE 191 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG +A+I++P+I + ALME I GPDFPTGA I GR GI+ AY TGRGS+++R +E Sbjct: 192 VIDGLIAMIEDPNITVSALMEHISGPDFPTGAYICGRAGIREAYETGRGSLMLRSRCEVE 251 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 K RE I++TEIPYQ NK ++E+IA LV+EK+I I+++RDESDRQG R+V++LK+ Sbjct: 252 KQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLKKD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +A+V++NQLY+ T LQ + + ++++ +PE L IL+ F+ R+ VV RRT + L Sbjct: 312 ENAEVVINQLYKMTPLQRGYGIILLSIVNNRPEILNLRQILEHFILHRKTVVYRRTAHDL 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA ++AH+L GL IA+ NLDEVV +I+ S NP AR L+ R Sbjct: 372 RKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINR----------------- 414 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LS +Q +AILE+RL RLTGL R+ I E +L EI+ +L+ S + Sbjct: 415 ---------FALSAIQAQAILEMRLHRLTGLEREKIIEEYQALMKEIEWLRRVLADESLV 465 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L II+QE +++++ RRT I+E ++ ED I REDMVVTV+H GY+KR P+ +YR Sbjct: 466 LQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVVTVTHAGYIKRNPVDLYR 525 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG G D+DF++ + + STH ++LFF++ G V+ KV+ +P ARGKA Sbjct: 526 AQRRGGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLARGKA 585 Query: 618 LINILSLNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 ++N+L L E++ I+P E Y++ AT+ G V++ + +F + R GKIA+ Sbjct: 586 VVNLLDLAPEEKLAAILPVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIAL 645 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 DEIL+ +N+ILL ++ G VRF IR GR + GVRGI+L D+++ Sbjct: 646 TFREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPM-GRGATGVRGINLGSADELV 704 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 +++ +SGD E TS Sbjct: 705 GVSV------------------------LSGDPE--TS---------------------- 716 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 IL V+E G+GKRT ++R+ R GKG+ A S+ N GA+V + V D DQ++++ Sbjct: 717 ---ILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERN--GAVVGMLQVTDEDQVMMI 771 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ G +IR+P+ ++R+ R T+GV +F+ +E+VV+++R+ ES Sbjct: 772 TNAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVALDRLAES 815 >gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] Length = 821 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/887 (43%), Positives = 556/887 (62%), Gaps = 86/887 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ + Sbjct: 2 NEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA Sbjct: 62 KAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMAT Sbjct: 122 RYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP H LGE++DG +AV +NPDI + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 182 NIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G Sbjct: 242 TIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL +P+ L L+ ++ ++ V Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 362 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 ------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELK 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL++ ++L II++EL +K+ + RRT IV GL +EDED I RE++VVT++H GY Sbjct: 456 DILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLETIEDEDLIERENIVVTLTHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 516 IKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P E + LY+ F TKHG +R LS F Sbjct: 576 EYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAE---LYLFFTTKHGVSKRTSLSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE++ V +++ TK G +RFP + +R GR + GV+GI Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D V+ M Sbjct: 692 TLTDDDVVVGM------------------------------------------------- 702 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E+ +E +L V+EKG+GKRT + ++R +R GKG++ +++ N G LV V Sbjct: 703 ----EILEEESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVTVKAT 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ G LIR+ +N+I I R T+GV + A++E V +V Sbjct: 757 KGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803 >gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909] Length = 893 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/900 (44%), Positives = 566/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 NVVDLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V +++E E VDEA+ T Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQT 826 >gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As] Length = 868 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/910 (42%), Positives = 558/910 (61%), Gaps = 74/910 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN+ Y K Sbjct: 6 KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+ ++ NP ++ LME + PDFPT +I G +G+++AY TGRG +V+R Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK +LE+IAELV+EK+I I+ ++DESD+ G RVVI Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F VNMVAL +P L ++ AF++ R E++ RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P A+ L+ ++W + + ++ Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425 Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ D+ Y + DG YLSE Q + IL++RL RLTGL +D I E + Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVM 484 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL+ R+ II E+ +++ E RR+ I D++ ED I +D+VVT Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PL+ YRAQRRGG+G+ +++D+V LF+ +TH +L FS+ G VY Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRN 660 KV+ P+G +RGK L+N+ L GE+ITT++P DE YV AT G V++ Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQH----YVFMATARGTVKKT 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+ F+ +G IA+ LD D ++ ++D++L + G+ VRF + +R GR Sbjct: 661 PLTAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GRE 719 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L VI++ L++ D Sbjct: 720 ARGVRGMQLEADQSVIAL-------------------------LVAED------------ 742 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + Q +LT +E G+GKRTS ++ R KG+ A S+ N G Sbjct: 743 ---------------ETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERN--GK 785 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V +D+I+L++D G L+R V EIR RAT+GV + + ++ V+ + E+ Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845 Query: 901 EIVDEAESTE 910 + DE TE Sbjct: 846 DD-DELPPTE 854 >gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34] gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus metallidurans CH34] Length = 897 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/904 (42%), Positives = 562/904 (62%), Gaps = 59/904 (6%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NPD +D L+E++ PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAR 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P L +L AF++ R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM + W++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I + LDIL+ R+ II +EL +++ E RR++I +++ ED I +D Sbjct: 486 REVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 +Y KV+ +P GS +RG+ ++N+ L GE+I I+P + ++ ++ AT G V Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFDAEH---FIFMATARGTV 662 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L+DF ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 663 KKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG++L +G VI+M + A+ + + GD + S Sbjct: 722 GRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVA------------EGDVSPVGS--- 766 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 767 ----------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERN- 803 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + + ++ ++RI Sbjct: 804 -GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 862 Query: 898 RESE 901 ES+ Sbjct: 863 VESD 866 >gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580] gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580] gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] Length = 822 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/901 (43%), Positives = 560/901 (62%), Gaps = 90/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV NPDI L LMEII GPDFPT +ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS + I++TEIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ V+ Sbjct: 303 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL +A+ +LDEV+ +IR S E A+ L+++ Sbjct: 363 RRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL VK+ + RRT IV GL +EDED I RE++VVT++H GY+ Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDLITRENIVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 A+G +IN+L + +GE I I+P E DES Y+ F TKHG +R LS F Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVGEFDDES-----YLFFTTKHGISKRTPLSQFA 631 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE+++V I++ TK G +RFP + +R GR + GV+G Sbjct: 632 NIRNNGLIALSLRDEDELIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQM-GRTAAGVKG 690 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L D V+ M I L+ DS V Sbjct: 691 INLTDDDVVVGMEI----------------------------------LEEDSHV----- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 L V+EKG+GK T + ++R+ +R GKG++ +++ N G+LV V Sbjct: 712 --------------LIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENN--GSLVTVKA 755 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + +++++ G +IR+ + +I R T+GV + + E V +V + + E D Sbjct: 756 TTGEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEENDSE 815 Query: 907 E 907 E Sbjct: 816 E 816 >gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121] Length = 892 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/895 (44%), Positives = 566/895 (63%), Gaps = 84/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQ++S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDI 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I +E N L I E IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES + Y+VFAT+ G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V E DIL+ T +RF A+R GR + GV+GI+L +GD Sbjct: 641 IAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ Sbjct: 700 EVVGLD-VAHANS----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++V++ G +IR+ V++I R+ +GV + D+ V +V ++++ + DEAES Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAES 821 >gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] Length = 892 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/895 (44%), Positives = 566/895 (63%), Gaps = 84/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQ++S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDI 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I +E N L I E IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES + Y+VFAT+ G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIVNAIELENDESISTMIAVKDLESEDD--YLVFATRKGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V E DIL+ T +RF A+R GR + GV+GI+L +GD Sbjct: 641 IAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ Sbjct: 700 EVVGLD-VAHANS----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++V++ G +IR+ V++I R+ +GV + D+ V +V ++++ + DEAES Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAES 821 >gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] Length = 855 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/887 (43%), Positives = 560/887 (63%), Gaps = 86/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM++S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + LL D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPDI + LME I GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ G + +I+V+E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAQTEIEEYKG-KPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL +P+ TL L+ ++ + +V+ Sbjct: 302 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM++ Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I NE L +I E Sbjct: 413 -----------------FSLSYEQAQAILDMRLQRLTGLERDKIENEYKELIAKIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++EL+ VK++ + RRT I +EDED I R+++V+T++H GY+K Sbjct: 456 ILADGEKVLEIIREELIEVKEKFNDERRTVISMNEDHLEDEDLIPRQNVVITLTHHGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGGKG G+ D+DF+ LF ++H ++LFF++ G VY+ K + +P Sbjct: 516 RMPISTYRSQRRGGKGIQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L + Q E I+T++P E + +N Y+ F TKHG +R +LS F I Sbjct: 576 GRTAKGIPIINLLQIEQDETISTVIPIEEFD---DNSYLFFLTKHGIAKRTQLSSFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G A+ L DE+ V ++++ TK G +RF + +R+ GR + GV+GISL Sbjct: 633 RGGLFAITLRGDDELHGVRLTDGGQEVIIGTKHGMAIRFHETDVRLM-GRTAGGVKGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ M I+ EE Sbjct: 692 SDDDHVVGMDIL---------------------------------------------EEN 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+E G+GKRT ++R+ NR GKGI+ ++++ N G+LV++ V+D Sbjct: 707 HQ--------VLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKN--GSLVSLKVVSD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 I++++ G +IR+ V I R T+GV + + E V +V R Sbjct: 757 EHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVAR 803 >gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] Length = 879 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/889 (43%), Positives = 563/889 (63%), Gaps = 85/889 (9%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +I EM++S+L YA++VI+ RA+PD+RDG+KPVHRRIL+GM G+ +K Y K ARI G Sbjct: 13 NIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYKKSARIVG 72 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +VMGKYHPHG+++IY+A+ RMAQD+S R +L++GQGNFGS+DGD AA RYTE R+ K A Sbjct: 73 DVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTEARMSKIA 132 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 L+ D+ KDT+DF NYDG+ +EPVVL +R+PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 133 MELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVI 192 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +G + + NPDI + LME+I+GPDFPT +ILGR+GI+ AY TGRGS+++R + IE Sbjct: 193 NGVLELSKNPDISIPELMELIQGPDFPTAGLILGRSGIRRAYETGRGSVIMRAKTLIETR 252 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGA 318 +E I+++EIPYQVNKA ++EKIAEL R+K++ I DLRDE+ ++G R+VI+++R A Sbjct: 253 PNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRIVIDVRRDA 312 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+VILN LY+ T LQ+ F VNM+AL KP+ + + ++ ++ VV RRT Y L Sbjct: 313 NANVILNNLYKQTPLQTSFGVNMLALVDGKPQVLNIKQAIYHYLEHQKTVVRRRTAYNLK 372 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA DRAH+L GL IA+ ++DE++ +IR S N A + L ++ Sbjct: 373 KAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQ------------------ 414 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLTGL RD I +E L I E IL+ +LL Sbjct: 415 --------FKLSERQAQAILDMRLRRLTGLERDKIESEYQELLKYIDELRAILADEEKLL 466 Query: 499 GIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 II++EL+ ++D+ RRT IV G L D+EDED I E++V+T+S Y+KR+P S YR Sbjct: 467 QIIREELIEIRDKYGDERRTEIVAGGLEDLEDEDLIDEENIVITLSSNNYIKRLPASTYR 526 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ RGG+G G+ DEDFV+ + STH +VLFF++ G VYK K + +P S Q++G Sbjct: 527 AQHRGGRGIQGMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIP 586 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N++ L++ E I+T++ E + Y+VFATKHG ++R+ LS F +IN++GKIA+ Sbjct: 587 IVNVIDLDKDESISTMIAVKNLERE--DAYIVFATKHGLIKRSNLSHFSRINKNGKIAIN 644 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 DE+++V +++ TK +RF + +R GR + GV+GISL +GD+VI Sbjct: 645 FREEDELIAVRLTDGNKQLIIGTKHASLIRFEENKLRPL-GRTAAGVKGISLREGDEVIG 703 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 + ++ D E Sbjct: 704 LDVIESND---------------------------------------------------E 712 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +L V+E G+GKRT ++RISNR GKGI+ +++ N G LV + VN N+ I++V+ Sbjct: 713 HEVLVVTENGYGKRTKESEYRISNRGGKGIKTATITEKN--GNLVCITTVNGNEDIMIVT 770 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905 D G +IR+ V E R+ +GV + + + V +V ++ +E E++DE Sbjct: 771 DHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVMDE 819 >gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12] gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12] Length = 868 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/901 (42%), Positives = 554/901 (61%), Gaps = 73/901 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN+ Y K Sbjct: 6 KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C+ ++ NP ++ LME + PDFPT +I G +G+++AY TGRG +V+R Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK +LE+IAELV+EK+I I+ ++DESD+ G RVVI Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F VNMVAL +P L ++ AF++ R E++ RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P A+ L+ ++W + + ++ Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425 Query: 433 LID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ D+ Y + DG YLSE Q + IL++RL RLTGL +D I +E + Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDG-YYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVM 484 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL+ R+ II E+ +++ E RR+ I D++ ED I +D+VVT Sbjct: 485 EQIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVT 544 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GYVK PL+ YRAQRRGG+G+ +++D+V LF+ +TH +L FS+ G VY Sbjct: 545 ISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWM 604 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRN 660 KV+ P+G +RGK L+N+ L GE+ITT++P DE YV AT G V++ Sbjct: 605 KVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQH----YVFMATARGTVKKT 660 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+ F +G IA+ LD D ++ ++D++L + G+ VRF + +R GR Sbjct: 661 PLTAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GRE 719 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ L VI++ L++ D Sbjct: 720 ARGVRGMQLEADQSVIAL-------------------------LVAED------------ 742 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + Q +LT +E GFGKRTS ++ R KG+ A S+ N G Sbjct: 743 ---------------ETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERN--GK 785 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V +D+I+L++D G L+R V EIR RAT+GV + + ++ V+ + E+ Sbjct: 786 VVAACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEA 845 Query: 901 E 901 + Sbjct: 846 D 846 >gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 899 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/921 (44%), Positives = 576/921 (62%), Gaps = 55/921 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE +VVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ + A +E + G + Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERAGGVEEE--IEADDVDDVVETTDGAEAAVI 767 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +D GN++ +ILT +E GFGKRT ++ R +G+ + Sbjct: 768 EVADD----GNVA------------YILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTT 811 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV + D+++L+SD GTL+R +EI R T+GV + +K E++ + Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQA 869 Query: 894 VERIRES-----EIVDEAEST 909 VER+ S ++VDEA ++ Sbjct: 870 VERLDASLDEVEDVVDEASAS 890 >gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] Length = 893 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/900 (44%), Positives = 566/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V +++E E VDEA+ T Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQT 826 >gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis] Length = 888 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/915 (42%), Positives = 563/915 (61%), Gaps = 78/915 (8%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K ARI Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE RL K Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 AHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD C+ ++ P +D LMEII PDFPT +I G G+K Y TGRG +V+R H E Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVVMRAKCHFED 250 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VIELKRG Sbjct: 251 IDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +V+LN LY+ T LQ F +NMVAL +P+ L +++ F+ R EVV RRT Y L Sbjct: 311 EVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREVVTRRTVYEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI------ 431 KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ ELM R+W++ +++++ Sbjct: 371 RKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVREMLTRTRTD 430 Query: 432 -------DLIDDS---SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 D D + + +DG LSE Q + IL++RL RLTGL +D I E + Sbjct: 431 GGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKDVM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVRED 537 I++ LDILS R+ II EL +K E RR+ + D+ ED I D Sbjct: 491 SVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLSTEDLITPTD 550 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K PLS YR+Q+RGG+G+ +++D++ LFI +TH +L FS+ G Sbjct: 551 MVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLLCFSNRGR 610 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGN 656 +Y KVW +P GS +RG+ ++N+ L GE+I ++P + S+ + YV +T G Sbjct: 611 LYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHYVFMSTSMGT 670 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ L +F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 671 VKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDVRPM 730 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GRN+ GV+G++L +G VI+M L++ D Sbjct: 731 -GRNARGVKGMTLEEGQSVIAM-------------------------LVAED-------- 756 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + Q +LT +E G+GKRTS ++ R KG+ A S+ N Sbjct: 757 -------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGMIAIQQSERN 797 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +VA V+ +D+I+L++D G L+R V+EIR RAT+GV + S + ++ ++R Sbjct: 798 --GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDEGAKLGGLQR 855 Query: 897 IRESEIVD-EAESTE 910 I E++ + E E+T+ Sbjct: 856 IVENDANEVEGEATD 870 >gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] Length = 852 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/900 (43%), Positives = 565/900 (62%), Gaps = 71/900 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL DL K+TVDF PNYD S +EP++L A+ PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSRIAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ C+A++ N +I +D L+++I PDFPT +I G G+++ Y TGRG +V+R Sbjct: 186 NLSEVVEACLALLKNSNISIDELIDLIPAPDFPTAGIIYGVNGVRDGYRTGRGRVVMRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G+R+ I++ E+PYQVNKA +L +I ELVR+K+I I+DLRDESD+ G RVVI Sbjct: 246 THFEDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +VILN LY+ T +Q F +NMVAL +P L IL AF+ R EVV RR Sbjct: 306 ELKRGEVPEVILNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQILDAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A++N+DE++ +I+ +P P A+ LM ++W++ +++++ Sbjct: 366 TVFELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLT 425 Query: 433 --LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + D D + + + G +LS+ Q +AILELRL RLTGL ++ I E + Sbjct: 426 RAMADANALRPEGLDDMFGLKAQG-YHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVI 484 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + LDIL++ R+ II +EL ++K + RR+ IV D+ ED I D+VVT Sbjct: 485 EKIIDYLDILANPERITQIITEELDAIKLQFGDERRSEIVVDTQDLSMEDLITPADVVVT 544 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY+K L YRAQ+RGG+G+ +++DF+ LFI +TH +L FSSLG VY Sbjct: 545 LSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLGRVYWI 604 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P G Q+RGK +IN + L +GE+I I+P ++ N +V AT G V++ Sbjct: 605 KVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPV---KTFDENRFVFMATSFGTVKKTP 661 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS+F + +G IA+ LD D ++ VE ++D++L + G+ +RF + +R GR + Sbjct: 662 LSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPM-GRTA 720 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L G +VISM + + E++ L Sbjct: 721 RGVRGMKLGPGHKVISMLV--------------------------AENEDLAVL------ 748 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 T +E G+GKRT ++ NR +G+ A S N G + Sbjct: 749 --------------------TATENGYGKRTPISEYTRHNRGTQGMIAIITSARN--GKV 786 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V +D+I+L++ G LIR VNE+R SRAT+GV + + E++ +ER+ ESE Sbjct: 787 VTAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVVESE 846 >gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] Length = 878 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/908 (43%), Positives = 563/908 (62%), Gaps = 84/908 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAG 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 I LA D V+S+ AI+ Y +R ++ + R Sbjct: 724 IKLAGEDAVVSLIVPRGEGAILTVTQNGYGKRTAESEYPTKSR----------------- 766 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +G IS +++ R+G + A V ++I Sbjct: 767 GTQGVIS------------------------------IKVTERNGSVVGAVQVDDADQI- 795 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++D GTL+R V+EI + R T+GV++ TA+DE VV ++R+ Sbjct: 796 --------------MMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRV-- 839 Query: 900 SEIVDEAE 907 +E VD+ E Sbjct: 840 AEPVDDEE 847 >gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] Length = 832 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/895 (44%), Positives = 562/895 (62%), Gaps = 92/895 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ NK + K A Sbjct: 8 VEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YD + RMAQD+S R LI+G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGM+T+IP HNL Sbjct: 128 SSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG V +I P+I LM II+GPDFPTG I+GR I AY TGRG + +R + Sbjct: 188 GEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLTVRAKTR 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +R+QI+V E+P+QVNKA +++KIA LV++++I I+D+RDESDR G R+VIELK Sbjct: 248 IEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ +V+LNQLY+++ LQ FS M+AL +P+ +L IL+ ++ +++V+ RRTKY Sbjct: 308 REATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVITRRTKY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA DRAH+L G IA+AN+DE+V +I+ + + +TAR I L+D Sbjct: 368 DLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTAR----------------IALMD 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D LSE+Q AIL +RL LTGL R+ I E + L +I IL+ Sbjct: 412 DYE----------LSEIQANAILRMRLQSLTGLERNKIDTEYDELQAKITRYRSILADED 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LL I+K+E+L +KD+ + RRT+I++ + D+E ED I E +V+T++H GY+KR+ L + Sbjct: 462 KLLNIVKKEILEIKDKYNDKRRTKIMDKVTDLEIEDLIEEEQIVITMTHQGYIKRMALDL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG G+ ++EDFV ++F +TH LFFS+ G VY+ K +++P QARG Sbjct: 522 YRSQRRGGKGVIGISTKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARG 581 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+IN+L L + ERIT ++P FPED Y++ ATK+G +++ L D N +G Sbjct: 582 TAIINLLELKEEERITAVIPVKEFPED------AYLIMATKNGLIKKTSL-DAYDTNYTG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 I + L DE++ V ++ +I+L +K + + F S +R GRNS GVRGI L++ Sbjct: 635 LIGINLRENDELIGVRIIDEDENIILVSKNAKAIHFNESDVRS-VGRNSYGVRGIRLSEE 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D VI M I DS+ E Sbjct: 694 DYVIDMGI-------------------------------------DSAGE---------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L ++E G+GK+T ++RI NR GKGI ++++ N G L A V+ N + Sbjct: 707 ------HLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKN--GQLAAAKIVDANSE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +++++ +G +IRV EI R T GV I + +D++VVS+ RI E EIVDE E Sbjct: 759 MMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVDELE 813 >gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 824 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/892 (43%), Positives = 556/892 (62%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A VILN LY++T++Q+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LMQ+ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G + EDED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G LIN+L L++ E I TI+P D +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++S + I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M I+ E+ Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 C +L V++ G+GKRT + ++RI +R GKGI+ ++++ N G +VAV V Sbjct: 709 GCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GPIVAVKTVT 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897 + ++L++ G LIR+ V++I R T+GV + + D E V +V ++ Sbjct: 759 GEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810 >gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 820 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/904 (43%), Positives = 564/904 (62%), Gaps = 87/904 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE +GI V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R LI+G GNFGS+DGD AA Sbjct: 62 DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ A LL D+ K+TVDF PNYD +EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG V +ID+PD LD LM +I+GPDFPTG VILGR GI+ AY TGRGS Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I I DLRDESDR+G Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R V+LN L+++T+LQ+ F V +AL +P+ TL L+ ++ + + Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR+ L+ Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 T LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ L G+I+QE+L +K+ RRTRIV ++ +ED I D+V+ ++H GY Sbjct: 456 KAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+PLS Y +QRRGG+G + + +EDFVT L + STH +LFF++ G +Y K + +P Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 QARG ++N+L++ QGE++T ++P D + + Y+ FAT+ G V++ L+++ Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G IA+ L D+++ V+ +I++ T+ G +RFP + +R GR + GV+G Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL++GD+VI+M + A+ D+D Sbjct: 695 ISLSEGDEVIAMDV---AEDDHD------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V+ +G+GKRT ++R +R GKGI+ + + N G + + Sbjct: 715 -------------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V ++D +++V+ G IR+ V ++ SR T+GV + + + V SV R+ + D+ Sbjct: 760 VTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV----VKDDD 815 Query: 907 ESTE 910 E +E Sbjct: 816 EDSE 819 >gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 812 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/890 (43%), Positives = 554/890 (62%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE + V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 8 EELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKPY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R L++G GNFGS+DGDP AA RYT Sbjct: 68 KKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 128 EARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A IDNP I D LM I+GPDFPTG +I+G+ GI+ Y TGRG I++R Sbjct: 188 PHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRETYETGRGKIIVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ +G R +IVVTE+PY V K+ ++EKIAELVR+K I I+DLRDESDR G R+V Sbjct: 248 AKAEIEEHNG-RNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNGMRIV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR + V+LN+LY +T +Q F M+AL P+ +L I++ +V + +V+ R Sbjct: 307 IELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVDVITR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA +RAH+L GL IA+ ++DEV+ +IR S A+ LM + Sbjct: 367 RTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDKFG--------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q +AI+++RL RLTGL R I +ELN L +IKE IL Sbjct: 418 -----------------LSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S ++L IIK+EL VKD+ + RRT IV +++ ED + ED VVT++H GY+KR+ Sbjct: 461 SDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVVTMTHFGYIKRM 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL Y+AQ+RGGKG SG+ R++DFV ++F +TH +LFF++ G VY + +P Sbjct: 521 PLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G A+IN++ ++Q E++ ++P + S N YVV TK+G +++ ++ DF +I +S Sbjct: 581 QAKGTAIINLIQIDQDEKVNAVIPI---KKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKS 637 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+KLD DE+++V +I++ T G C+RF +R GR + GV ++L Sbjct: 638 GNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPM-GRQARGVIAVTLRD 696 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M +V D D D Sbjct: 697 DDYVVEMDLV---DRDKD------------------------------------------ 711 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL V+E G+GKR+ + ++R R+GKGI A ++K + G LV++ V++ D Sbjct: 712 --------ILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITK--KTGKLVSIMSVSEKD 761 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++++S G LIR + +I R T GV++ + +RVVS RI E Sbjct: 762 ELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIANDE 811 >gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1] gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1] Length = 824 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/892 (43%), Positives = 555/892 (62%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A VILN LY++T++Q+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ LDEV+ +IR S E AR LMQ+ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G + EDED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G LIN+L L++ E I TI+P D +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++S + I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M I+ E+ Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 C +L V++ G+GKRT + ++RI +R GKGI+ ++++ N G +VAV V Sbjct: 709 GCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GPIVAVKTVT 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897 + ++L++ G LIR+ V++I R T+GV + + D E V +V ++ Sbjct: 759 GEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810 >gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] Length = 821 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/892 (43%), Positives = 567/892 (63%), Gaps = 92/892 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+ Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R +N Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 416 -------------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ ++++ II+ E+L +KD RRT I G ++M EDED I E+ VVT++H GY+ Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 A+G ++N+L++++GE++T ++ F ED Y +F TK G +R +S F Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDEDA------YFIFTTKTGITKRTPVSQF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L D+++SV + I++ T+ G VRF IR GR + GVR Sbjct: 631 ANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVR 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD+V+ M IV Sbjct: 690 GIKLRDGDEVVGMEIV-------------------------------------------- 705 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E QE IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV Sbjct: 706 --EPGQE-------ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVK 754 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V+ ++ I+L++ G LIR+ VN+I + R+T+GV + DE V +V ++ Sbjct: 755 TVDGSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKV 806 >gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] Length = 847 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/908 (41%), Positives = 565/908 (62%), Gaps = 85/908 (9%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 + + +E ++ +SI E+Q SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G Sbjct: 1 MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + +N+ YVK ARI G+V+GKYHPHG+ A YD + RMAQ++SLR L++GQGNFGS+DGD Sbjct: 61 IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE R+ + ++ DL KDTVDF PNYD S EP V+ +R PN+L+NG GIAV Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HN+ EV+DG +A+ D+P+I + LM +I GPDFPTGA I GR+GI+ AY TG Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYICGRSGIREAYETG 240 Query: 245 RGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RG +V+R ++H+E + G RE I++TEIPYQ NKA ++EKIA LV++K+I I+++RDES Sbjct: 241 RGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDES 300 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G RVVIELKR +++V++NQLY+ T +Q F + ++A+ KP L IL+ F+ Sbjct: 301 DRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNKPMILNLKQILEHFLV 360 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 R+ VV RRT + L KA ++AH+L GL +A+ NLDEVV +I+ + NP A+ L++R Sbjct: 361 HRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVER--- 417 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LS +Q + IL++RL RLTGL R I ++ ++ E Sbjct: 418 -----------------------FELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQE 454 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I IL+ + +LGIIK E L +++ RRT I++ + D+ ED I EDM VTV+ Sbjct: 455 ITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H G++KR P ++YR+Q RGGKG SG +EDF++DL++ ST + LFF++ G V+ KV Sbjct: 515 HSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKV 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP+ ARGKA++N+L L++ E++ I+P E + ++ TK G +++ L Sbjct: 575 YQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQ 634 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F + R GK A+ ++ DEI+ ++ +LL T G+ + F S +R GR + G Sbjct: 635 EFRRPLRKGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTM-GRTAAG 693 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI+L + D+V+S I + NDS Sbjct: 694 VRGITLGEDDEVVSA---------------------------------IVASSNDS---- 716 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 IL V+E G+GKR+ ++RI R GKGI S+ N G L++ Sbjct: 717 ----------------ILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERN--GDLIS 758 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESE 901 V+D ++I++++D G +IR+ + +RI R+T+GV + + DE+VVS++ + ES+ Sbjct: 759 AKQVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEKVVSMDTVARDESD 818 Query: 902 IVDEAEST 909 + DE + T Sbjct: 819 LDDEVDGT 826 >gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 807 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/882 (43%), Positives = 550/882 (62%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRILF M +G+ K Y K A Sbjct: 9 VVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDA+ RMAQD+S R L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ K+T+D++ N+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 AKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG VA+I+NP+I + LM I+GPDFPTG +ILGR GIK+AY+TGRG + IR + Sbjct: 189 DEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDAYSTGRGKLKIRAKTE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++ +I+VTEIPYQVNKA ++E IA LVREK+I I+DLRDESDR G RVVIELK Sbjct: 249 IENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + +V+LNQLY+YT+L+ F + ++AL +P+ +L IL ++ F++EV++RRTKY Sbjct: 309 RDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDHYLEFQKEVIIRRTKY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KA RAH+L GL IA+ NLD V+++IR S + A+ LM Sbjct: 369 LLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMN---------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL +LT L RD I E + L +I +L Sbjct: 413 ----------NFSLSDKQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQ 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L IIK+E+ +K++ RRT I ++++ED I E++++T++H GYVKRVPLS Sbjct: 463 LVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPLST 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q+RGG+G SG+ +++DFV LF STH +LFF++ G VY+ KV+ +P S QARG Sbjct: 523 YRNQKRGGRGISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARG 582 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N+L+++ E IT ++P F ED+ Y+ F TK G ++ LS+ + G Sbjct: 583 TAIVNLLAIDPDEHITAVIPIQEFTEDD------YLFFVTKQGVAKKVILSELKAYRKDG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ DE++ V + +I+L T+ G ++F +R GRNS GV+GISL Sbjct: 637 LIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSM-GRNSRGVKGISLKDN 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI M +I++E Sbjct: 696 DRVIGM---------------------------------------------DIAQENSD- 709 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT ++R +R GKGI S+ + G L VN++++ Sbjct: 710 -------LLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPSE--KSGNLAGCIVVNEDEE 760 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 IILV+ +G + R V I SR T+GV + D++VVS+ Sbjct: 761 IILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVVSL 802 Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 21/211 (9%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D + V+ G K+V LS +A R+ G + + ++D + D+ + ++ + Sbjct: 609 DDYLFFVTKQGVAKKVILSELKAYRK--DGLIAINLNEDDELIDVHLTDGKQEIILGTEQ 666 Query: 596 GFVYK---EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G K E+V + S +G +SL +R+ + + + N ++ + Sbjct: 667 GLAIKFSEEEVRSMGRNSRGVKG------ISLKDNDRVIGM------DIAQENSDLLIVS 714 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRFP 709 ++G +R +S++ +R GK ++ ++ C ++ +I+L T G R Sbjct: 715 ENGYGKRTPVSEYRTQSRGGKGIYTFKPSEKSGNLAGCIVVNEDEEIILVTAQGVINRQQ 774 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 + I + R + GVR I L DQV+S+AI Sbjct: 775 VEGISQMS-RRTQGVRLIKLKDDDQVVSLAI 804 >gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] Length = 841 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/895 (43%), Positives = 560/895 (62%), Gaps = 100/895 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K + K A Sbjct: 9 VKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPFKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+YD + RMAQD++ R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDG+ +EPVV+ AR+PN+LVNG GIAVGMATNIP H L Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATNIPPHQL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+ PD+ + LMEII GPDFPT +ILGR+GI+ AY TGRGSI +R Sbjct: 189 GEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKVE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S +E I+V EIPYQVNKA ++EKIAELVR+KRI I DLRDESDR G R+VIE++ Sbjct: 249 IEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L+ ++ ++ V+ RRT++ Sbjct: 309 KDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQKVVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM + Sbjct: 369 ELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTK--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLTGL R+ I +E +SL I E IL+ Sbjct: 414 -----------FNLSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKAILADEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II++EL VK+ + RRT IV G ++ +EDED I RE++V+T++H GY+KR+P+S Sbjct: 463 KVLEIIREELTEVKERFNDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ+RGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P S A+ Sbjct: 523 TYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPEFSRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +++ E + I+P E W ++ F TK G +R+ LS F I +G I Sbjct: 583 GIPIINLLGVDKDEWVNAIIPVEEFADDW---FLFFTTKQGISKRSPLSSFANIRNNGLI 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV +I++ T G +RFP +R GR + GV+GISL+ GD+ Sbjct: 640 ALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSM-GRTATGVKGISLSAGDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M + L++DS Sbjct: 699 VVGMEV----------------------------------LEDDSQ-------------- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL V++ G+GKRT + ++R+ R GKGI+ +++ N G+LV++ V + ++ Sbjct: 711 -----ILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKN--GSLVSMKAVTGEEDVM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 L++ G LIR+ VN+I R T+GV + IR +E DEA ST Sbjct: 764 LITTGGVLIRMAVNDISTMGRNTQGVRL--------------IRINEDADEAVST 804 >gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] Length = 893 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V ++ E E DEA+ + Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826 >gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 898 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/914 (44%), Positives = 573/914 (62%), Gaps = 52/914 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YVDNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTSLSEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ IV DE I + G + Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAGGADEEI-EADDVDDVVETTDGAETAVI 767 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +D GN++ +ILT +E G+GKRT ++ R +G+ + Sbjct: 768 EVADD----GNVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV + D+++L+SD GTL+R +EI R T+GV + +K E++ + Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869 Query: 894 VERIRESEIVDEAE 907 VER+ S +DE E Sbjct: 870 VERLDAS--LDEVE 881 >gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A] gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A] Length = 861 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 76/894 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G WNKKY K A Sbjct: 8 IVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYSKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+VMGKYHPHG++AIYD L RMAQ +S+R +L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 68 TIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRYTESRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL D+ K+TVDF PNYDGS +EP VL PN+LVNG GIAVGMATNIP H+L Sbjct: 128 AKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNIPPHHL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D + ++D+P+ + LM + GPDFPTGA+I G GI AY TG+G I IR +H Sbjct: 188 GETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGALINGTKGIYEAYETGKGRIYIRAKTH 247 Query: 256 IEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +Q IVV E+PYQVNKA +L KIAELV++K+I I LRDESD+ G R+VIE+ Sbjct: 248 IETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIRMVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG A+VILNQL++ T LQ+ FSVNMVAL G +P+ L +L F+A R EVV RRT Sbjct: 308 RRGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQPKLLGLKSLLNVFIAHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+RAH+L GLA+A++N+D+++ +I+ + P A+ L+ ++W A + ++ Sbjct: 368 YELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAVMLAHA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 + Y + + G YLS Q +AIL+LRL RLTGL ++ I E S+ +I+ Sbjct: 428 GAENSRPEQLAEEYGLHAGG-YYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSIIRDIE 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 L IL RL+ +IK+ELL++K + + R T I++ LD+ ED I ED V+T+SH Sbjct: 487 GFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSHE 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+K PLS Y AQRRGGKG+S ++D+DFV LFI +TH ++L FS+ G VY KV+ Sbjct: 547 GYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWLKVYE 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662 LP S A+GK ++N+L ER+ I+ +PED LY+ FAT++G V++ L Sbjct: 607 LPHASRNAKGKPIVNLLPFEADERLNAILTTREYPED------LYLFFATQNGTVKKTPL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S++ + +G IA+ L D+++ VE E +I+L + G+ VRF +R GR + Sbjct: 661 SEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSM-GRAAG 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L G +VI++ C +K GD Sbjct: 720 GVRGMRLEAGQKVIAL--------------CVLKD--------QGD-------------- 743 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILT++E G+GKRT + D+ R KG+ + S+ N G V Sbjct: 744 -----------------ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERN--GNAV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V +++ I+LV+D GTL+R V EI + R T+GV + TA+ E+V++ + Sbjct: 785 YAIQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAAK 838 Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 24/152 (15%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEERC------------QELKLKEQFILTVSEKGFGK 810 RL++ EE+ ++K +++RC ++L +E ++T+S +G+ K Sbjct: 497 RLVAVIKEELLAIK------AQFNDQRCTHILDTHLDLSMEDLIAEEDRVITLSHEGYIK 550 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 D+ R GKG V+ I + + +F N +D ++ S+KG + + V E+ Sbjct: 551 AQPLSDYEAQRRGGKG---KSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWLKVYEL 607 Query: 871 RIASRATKG---VVIFSTAKDERVVSVERIRE 899 ASR KG V + DER+ ++ RE Sbjct: 608 PHASRNAKGKPIVNLLPFEADERLNAILTTRE 639 >gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87] gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87] Length = 891 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/888 (44%), Positives = 563/888 (63%), Gaps = 84/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 10 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 70 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 190 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G R+VI++ Sbjct: 250 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 310 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 370 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 416 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 464 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPV 523 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 524 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 583 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 584 KGIPVVNAIELENDETISTMIAVKDLESEEH--YLVFATKRGIVKRSALSNFSRINKNGK 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI+L +GD Sbjct: 642 IAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + V HA++ Sbjct: 701 VVVGLD-VAHAES----------------------------------------------- 712 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 713 ---EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 767 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++V++ G +IR+ V +I RA +GV + + + V +V +++E E Sbjct: 768 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEE 815 >gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] Length = 862 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/898 (43%), Positives = 574/898 (63%), Gaps = 71/898 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT + I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +G WN+ Y K Sbjct: 6 KEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRSYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+Y+A+ RMAQ + +R LI+GQGNFGSVDGDP AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A+ LL DL K+TVD+ NYDG+ Q P +L R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A IDN DI +D+LM+ I GPDFP+ A+I G+K AY TGRG I IR Sbjct: 186 NLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYRGLKEAYETGRGKIYIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE RE IV+ EIPYQ+NK+ +LEKIAELV+ KRI I +LRDESD+ G R+VI Sbjct: 246 SEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ++K A ++++LN LY TSLQ F +NMVAL+ +P+ +L IL AFV R ++ RR Sbjct: 306 DIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQPKTMSLKDILSAFVCHRRSIITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430 + L KA +R HVL GL +A++N+D V+ +I+ + + A EL + W +++I ++ Sbjct: 366 IMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNIINMRK 425 Query: 431 ---IDLID----DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 +DL+ D+S I D Y ++ Q +AILELRL +LT L + + E ++ + Sbjct: 426 KISVDLLHSGWLDAS-NIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENVLKK 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTV 542 ++ + +L + S L+G+I+QEL+S+K+E + PRRT I E ++ +++ E+ I + D+VVT+ Sbjct: 485 MENLICVLQNPSSLMGLIRQELVSIKEEYNDPRRTEISENIVSNIDLENLINQRDVVVTL 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S+ GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y K Sbjct: 545 SYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+RLP + +RG+ +IN+L L+ ERIT I+P + V AT G V++ L Sbjct: 605 VYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQ---VFMATSSGFVKKTAL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + G IA+ L++ DE++ + +N+++L T G+ VRF + +R GR++ Sbjct: 662 MEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQVRSM-GRSAS 720 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVRG+ L +GD+V+S+ I K+ SS Sbjct: 721 GVRGVHLLQGDRVVSLIIP----------------------------------KDQSS-- 744 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILTV+E GFGKRT+ ++ + +R+ +G+ + V++ N G +V Sbjct: 745 -----------------ILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERN--GNVV 785 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+ DQI++V+D G L+R+ V+E+ I R T+GV++ TA DE VV ++R+ ES Sbjct: 786 GAVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVMLIRTACDEHVVGLQRVVES 843 >gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424] gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus taiwanensis LMG 19424] Length = 892 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/904 (42%), Positives = 563/904 (62%), Gaps = 64/904 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF NYDGS +EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+A R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W+++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + EI + LDIL+ R+ II EL +++ E RR++I +++ ED I +D Sbjct: 486 RDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 +Y KV+ +P GS +RG+ ++N+ L++GE+I I+P + ++ ++ AT G V Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEH---FIFMATARGTV 662 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG++L +G VI+M + E Sbjct: 722 GRQARGVRGMNLEEGQAVIAMLVA---------------------------PAETAEEAA 754 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D+ V G++ LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 755 DAGVRGSV---------------LTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 798 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA V+ D+I+L++ G LIR V EIR RAT+GV + + + ++ ++RI Sbjct: 799 -GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 857 Query: 898 RESE 901 ES+ Sbjct: 858 VESD 861 >gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] Length = 890 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/888 (44%), Positives = 563/888 (63%), Gaps = 84/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G R+VI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPVVNAIELENDETISTMIAVKDLESEEH--YLVFATKRGIVKRSALSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI+L +GD Sbjct: 641 IAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + V HA++ Sbjct: 700 VVVGLD-VAHAES----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++V++ G +IR+ V +I RA +GV + + + V +V +++E E Sbjct: 767 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEE 814 >gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/885 (44%), Positives = 561/885 (63%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G R+VI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQS F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELSEIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIVNAIELENDETISTMIAVRNLESEDD--YLVFATKRGIVKRSALSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RFP SA+R GR + GV+GI+L +GD Sbjct: 641 IAISFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ Sbjct: 700 EVVGLD-VAHAES----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + + + V +V +++ Sbjct: 767 MVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVAKVK 811 >gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] Length = 821 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/892 (43%), Positives = 565/892 (63%), Gaps = 86/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY TGRGSI+ Sbjct: 183 IPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I++ E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ +++ II+ E+L +K+ + RRT I G ++M EDED I E+ VVT++H GY+ Sbjct: 457 ILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L++ +GE++T ++ S ++ Y +F TK G +R +S F I Sbjct: 577 FGRTAKGLPIVNLLNIEKGEKVTAMIRVA---SFDDDAYFIFTTKTGITKRTPVSQFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L D+++SV E +++ T+ G VRF IR GR + GVRGI Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M IV E Sbjct: 693 LRDGDEVVGMEIV----------------------------------------------E 706 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 QE IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV V+ Sbjct: 707 PGQE-------ILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKN--GPMVAVKTVD 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ ++L++ G LIR+ VN+I + R+T+GV + DE V +V ++ ++ Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKVEKA 809 >gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] Length = 816 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/889 (42%), Positives = 560/889 (62%), Gaps = 85/889 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE+ I + I EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + + Sbjct: 3 DEKNTSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R+ L++G GNFGSVDGD PAA Sbjct: 63 KPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K + LL D+ K+TVDF PN+D S +EP+VL AR+PN+LVNG GIAVGMAT Sbjct: 123 RYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP HNLGEV+D V +ID PD D++ LM ++GPDFPTGA+I+G IK AY TGRG I Sbjct: 183 SIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE+ ++QIVVTEIPYQVNKA ++E+IAELV++K+I I+DLRDES+R G Sbjct: 243 KVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKR +A++ILN LY+++ ++ SV M+AL +P+ L +L ++ +++V Sbjct: 303 RIVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTKY LNKA RAH+L GL IA+ N+D V+ IR S A+ +L++R Sbjct: 363 VTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFG------ 416 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E+Q +AILE+RL RLTGL R+ I E + L +I E Sbjct: 417 --------------------LTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL+S LLG+IK E++ +K++ RRT I +++ D I E++ +T++H GY+ Sbjct: 457 EILASEEVLLGVIKDEIIEIKNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P YR+Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V++ + +P Sbjct: 517 KRLPADTYRSQKRGGRGISALTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L GE+I T++ + N Y++ ATK G V++ K+SDF I Sbjct: 577 GKRQAKGTAIVNLLQLGPGEKIATLIDV---DGKEENKYLLIATKKGMVKKTKISDFKNI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG I++ L DE++ V+ E D++L T+ G +RF +R GR ++GV+GI+ Sbjct: 634 NKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTRNGMSIRFSEKDVRGM-GRTAMGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +G D+ V +++ E Sbjct: 693 LGEG---------------------------------------------DTVVSMSLASE 707 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L VSE GFGKRT ++R R+GKGI+ ++S+ + G++V V Sbjct: 708 GTD--------MLVVSENGFGKRTDLEEYRSQIRAGKGIKTYNISE--KTGSIVGAEMVA 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D++++++ G LIR+ VNEI I R T GV + + ++ +VS+ +I Sbjct: 758 EDDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVDEEVSIVSIAKI 806 >gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63] gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] Length = 808 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/889 (43%), Positives = 559/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ +N Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK-FN------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 414 ------------------LTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630] gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255] gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile] Length = 808 Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRD--LISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144] Length = 893 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V ++ E E DEA+ + Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826 >gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028] Length = 894 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/900 (44%), Positives = 564/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V ++ E E DEA+ + Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826 >gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7] gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7] gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208] gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3] Length = 819 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/887 (43%), Positives = 553/887 (62%), Gaps = 88/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +AV +NP+I + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+TS +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R A+A VILN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ V+ Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E D Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+L II++EL +K+ + RRT IV GL +EDED I RE++V+T++H GYV Sbjct: 457 ILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVITLTHNGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P S+++ LY+ F TK G +R LS F Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPV----STFDEELYLFFTTKQGVSKRTALSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+++V + I++ TK G +RFP +R GR + GV+GI Sbjct: 633 IRNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D V+ M I L+ DS V Sbjct: 692 TLTDDDVVVGMEI----------------------------------LEEDSHV------ 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L V+E G+GKRT + ++R+ +R GKG++ ++ N G LV V Sbjct: 712 -------------LIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKAT 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ G LIR+ +N+I R T+GV + + E V +V Sbjct: 757 RGEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATV 803 >gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA] gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA] gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400] Length = 857 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/884 (44%), Positives = 557/884 (63%), Gaps = 58/884 (6%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR Sbjct: 9 TAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+AA YD + RMAQD+SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL+DL K+TVD PNYDGS EP+VL +++PN+LVNG GIAVGMATNIP HNL Sbjct: 129 QLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLT 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++G +A I+NP+I + L+ +I GPDFPTG I GR GI Y TGRG + +R + I Sbjct: 189 EVINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASI 248 Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ I+VTEIPYQVNKA ++ KIAELVREK++ I+D+RDESDR G R+VI+LK Sbjct: 249 ETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + VILN LY+ T +Q+ F +NM+A+ +P TL + F+ R E+V RRT + Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L G IA+ LD V+ +IR S P A+ LM ++ + + L Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKMGLPL 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + ++ + L+EVQ + IL LRL RLTGL RD I E + + I +IL+S + Sbjct: 429 PAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILASEA 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL +K++ RRT IV+ ++ ED IV ED+VVTVSH GY+KR +S Sbjct: 488 EILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQ 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG++G+ ++EDFV LF+ S+ +LFF+ G VY+ KV+ +P G RG Sbjct: 548 YRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L + E+IT I+ + N ++ AT+ G V+++ L ++ I G IA Sbjct: 608 KAIVNLLNLQENEQITAILSVKGFDDDRN---IIMATRLGVVKKSPLREYANIRSGGIIA 664 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D++++V D+LL +K G+ +RF R GR S GVRG+SL D V Sbjct: 665 VNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPM-GRVSRGVRGMSLEDDDVV 723 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M I ++ +A +G T Sbjct: 724 IGMEI-INPNA-------------------TGST-------------------------- 737 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I TV+E GFGKRT ++R+ +R GKGI ++ N G +V + V D + ++L Sbjct: 738 ----IFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTDENDLML 791 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++D+G ++R+PV + + R T+GV + + ++ER+V+V ++ E Sbjct: 792 ITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAE 835 >gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1] gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1] Length = 919 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/922 (42%), Positives = 564/922 (61%), Gaps = 92/922 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M +G N+ Y K A Sbjct: 24 LIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+ Sbjct: 84 RVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL D+ K+TVDF PNYD S EP+V+ ++PN+LVNG GIAVGM TNIP HN+ Sbjct: 144 DRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNM 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +ID+P + LM+ I GPDFPT A I GR GI AY TGRG I IR + Sbjct: 204 GEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATITGREGIARAYETGRGQITIRARTE 263 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + GDRE I++TEIPYQVNKA ++EKIA+LVREK++ I+D+RDESDRQG R+ IEL Sbjct: 264 IETSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIEL 323 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A + V+LN L+ T L++ F M+A++G +P L +L F++ R +V+ RRT+ Sbjct: 324 KRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRTLNLKELLDRFISHRRDVITRRTR 383 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM----------QRSWNA 424 Y L KA R H++ GL +A +D VV +IR S +P+ AR LM +R N Sbjct: 384 YELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFGNL 443 Query: 425 SDI-----KDLIDLIDDSSYTIGSD--GTMY------LSEVQTRAILELRLARLTGLGRD 471 I K ++++ + D G + SE+Q + ILE+RL RLTGL R+ Sbjct: 444 PRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQRE 503 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ EL +L +I DIL+ S LL +IK EL ++ RRT I + ++ ED Sbjct: 504 ELFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGDKRRTEITGEVSEITSED 563 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I EDMVVT+SH GYVKR PL+ YRAQ+RGG+G++G +++DFVTDLF+ STH ++ Sbjct: 564 LIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVASTHAFLMP 623 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYV 648 ++ G +Y KV ++P S +RGKA+IN++ + E++ ++ FPE N +V Sbjct: 624 ITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPE------NRFV 677 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 F TK G V+R LS F + SG IA+ ++ DE+++V+ D+LL+T G +RF Sbjct: 678 FFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVKITDGSKDVLLSTAQGMSIRF 737 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P +R GR + GV+GI+L GD+V+ +V Sbjct: 738 PEEEVRSM-GRQAYGVKGITLVDGDEVVGADVV--------------------------- 769 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + D+++ LTV+E G+GKRT ++R+ R GKGI Sbjct: 770 -------EKDATI-------------------LTVTENGYGKRTQEAEYRVQGRGGKGI- 802 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK- 887 D+ G +V + V D D+++LV++ G LIR+ EI + R T+GV + + Sbjct: 803 -IDIKTTERNGKVVGLVQVKDADEVLLVTNGGMLIRMKAREISVIGRNTQGVRLIALENG 861 Query: 888 DERVVSVERIRESEIVDEAEST 909 E+V + ++ ES +E+E T Sbjct: 862 TEKVTGISKLPESS--NESEDT 881 >gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932] gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55] gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34] gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196] gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196] Length = 808 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6] gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6] Length = 885 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/915 (42%), Positives = 554/915 (60%), Gaps = 88/915 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L DL K+TVDF PNYDGS +EP+VL +R PN+LVNG GIAVGMATNIP H Sbjct: 126 RLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ NP+ ++ LMEII PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGIIYGINGVREGYRTGRGKVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK+I I+ ++DESD+ G R+VI Sbjct: 246 VHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P+ L +L+ F+ R EVV RR Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQPKLCNLKQLLEIFLEHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDR HVL GLA+A+AN+DE + I+ SP P A+ LM +SW++S +++++ Sbjct: 366 TVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSVVREMLT 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + +DG LS+ Q IL++RL RLTGL +D I E Sbjct: 426 RAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKIVGEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI 533 + +I + LDIL+ +R+ II EL +V+ E RR+ + + ++ ED I Sbjct: 486 KDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQELGTEDLI 545 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 DMVVT+SH GY+K PL+ YRAQ+RGG+G+ +D+D+V +LFI +TH +L FS Sbjct: 546 TPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWMLCFS 605 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNL 646 + G VY KVW +P G +RGK ++N+ L E+I ++P FP D Sbjct: 606 NRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADH------ 659 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 Y+ T G V++ L DF ++G IA+ LD D ++ ++D++L + G+ V Sbjct: 660 YIFMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAV 719 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 RF +R GR + GVRG++L +G VI+M L++ Sbjct: 720 RFDEEDVRPL-GRQARGVRGMALDEGQSVIAM-------------------------LVA 753 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 D + Q +LT +E G+GKRTS ++ R KG Sbjct: 754 ED---------------------------ETQSVLTATENGYGKRTSILEYTRHGRGTKG 786 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 + A ++ N G +VA V ND+I+L++D+G L+R V EIR RAT+GV + + Sbjct: 787 MIAIQQTERN--GKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALD 844 Query: 887 KDERVVSVERIRESE 901 + ++ ++RI E++ Sbjct: 845 EGAKLSGLQRIVEND 859 >gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 898 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/914 (44%), Positives = 573/914 (62%), Gaps = 52/914 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE I+VTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YVDNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ IV DE I + G + Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAGGADEEI-EADDVDDVVETTDGAETAVI 767 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + +D GN++ +ILT +E G+GKRT ++ R +G+ + Sbjct: 768 EVADD----GNVA------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV + D+++L+SD GTL+R +EI R T+GV + +K E++ + Sbjct: 812 ERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869 Query: 894 VERIRESEIVDEAE 907 VER+ S +DE E Sbjct: 870 VERLDAS--LDEVE 881 >gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 900 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/925 (43%), Positives = 574/925 (62%), Gaps = 63/925 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ + A D E T Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA----------GGVEEEIEGEEVDDVVEAT 759 Query: 774 SLKNDSSVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + +E GN++ +ILT +E G+GKRT ++ R +G+ Sbjct: 760 DGGESAVIEVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIG 807 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++ N G LV + D+++L+SD GTL+R +EI R T+GV + +K E Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865 Query: 890 RVVSVERIRES-----EIVDEAEST 909 ++ +VER+ S E+VDEA ++ Sbjct: 866 KLQAVERLDASLDEVDEVVDEAGAS 890 >gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] Length = 820 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/904 (43%), Positives = 561/904 (62%), Gaps = 87/904 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE +GI V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R LI+G GNFGS+DGD AA Sbjct: 62 DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ A LL D+ K+TVDF PNYD +EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG V +IDNPD LD LM +I+GPDFPTG VILGR GI+ AY TGRGS Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I I DLRDESDR+G Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R V+LN L+++T+LQ+ F V +AL +P+ TL L+ ++ + + Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR+ L+ Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 T LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ L +I+QE+L +K+ RRTRIV ++ +ED I D+V+ ++H GY Sbjct: 456 KAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+PLS Y +QRRGG+G + + +EDFVT L + STH +LFF++ G +Y K + +P Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 QARG ++N+L++ QGE++T ++P D + + Y+ FAT+ G V++ L+++ Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G IA+ L D+++ V+ +I++ T+ G +RFP + +R GR + GV+G Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL++GD+VI+M + A+ D+D Sbjct: 695 ISLSEGDEVIAMDV---AEDDHD------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V+ +G+GKRT ++R +R GKGI+ + + N G + + Sbjct: 715 -------------VLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKN--GHAIEMCM 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V D I++V+ G IR+ V ++ SR T+GV + + + V SV R+ + D+ Sbjct: 760 VTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASVSRV----VKDDD 815 Query: 907 ESTE 910 E +E Sbjct: 816 EDSE 819 >gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] Length = 884 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/886 (45%), Positives = 559/886 (63%), Gaps = 88/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 10 INERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYTE ++ Sbjct: 70 RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 190 TEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRGSIQMRARAS 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIPYQVNKA M+EKIAEL REKRI I DLRDE+ R G RVVI++ Sbjct: 250 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLRTGVRVVIDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A+VILN LY++T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 310 RKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQKTVVRRRTE 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L +R Sbjct: 370 YNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQER-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I NE N L I E +IL++ Sbjct: 416 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I G LD +EDED I E +V+T+SH Y+KR+P+ Sbjct: 464 EVLLQLVRDELTEIKERFGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHNNYIKRLPV 523 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Q+ Sbjct: 524 STYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQS 583 Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G +IN + L E I+T++ EDE+S ++VFATK G V+R+ LS+F IN++ Sbjct: 584 KGIPVINAIELENDEVISTMIAVRDLEDENS----FLVFATKKGIVKRSALSNFSHINKN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+ DE+++V + DILL T +RFP +++R GR + GVRGISL + Sbjct: 640 GKIAIGFKEDDELIAVRLTDGKQDILLGTAHASLIRFPENSLRPL-GRTASGVRGISLRE 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ + D Y E Sbjct: 699 NDVVVGL------DVAYAE----------------------------------------- 711 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E +L V+EKG+GKRT ++R+SNR GKGI+ +++ N G +V + V+ + Sbjct: 712 ----SEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNVVCITTVSGQE 765 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++V+D G +IR+ V +I RAT+GV + ++ V +V ++ Sbjct: 766 DLMIVTDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKV 811 >gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51] gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51] Length = 770 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/764 (48%), Positives = 508/764 (66%), Gaps = 45/764 (5%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L EI Sbjct: 426 AGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKTS 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------- 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 659 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 718 Query: 709 -PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 P+ +R GR + GVRG+ LA GDQV+S+ + Sbjct: 719 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV 761 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 13/160 (8%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLKEQFILT 802 E I + H +++ RL+ EE+ +++ S + + +EL +E ++T Sbjct: 482 EEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVT 541 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S +G+ K D+ R GKG AT + + + I L+ N +D I+L S +G Sbjct: 542 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLV---ANTHDNILLFSTRGKT 598 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R+ V ++ +ASR +G V + ++ER+ ++ + E Sbjct: 599 YRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTE 638 >gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] Length = 883 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/904 (41%), Positives = 560/904 (61%), Gaps = 65/904 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAR 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EK++ I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+ R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM +SW++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I + LDIL+ R+ II EL +++ E RR++I +++ ED I +D Sbjct: 486 RDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 +Y KV+ +P GS +RG+ ++N+ L+ GE+I I+P + ++ ++ AT G V Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFDAEH---FIFMATARGTV 662 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG++L + VI+M + +T E T + Sbjct: 722 GRQARGVRGMNLDESQTVIAMLVA------------------------PAETAEQTEAGS 757 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 SV LT +E G+GKRT ++ R KG+ A S+ N Sbjct: 758 PGSV-------------------LTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN- 797 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +VA V+ +D+I+L++ G LIR V EIR RAT+GV + + + ++ ++RI Sbjct: 798 -GRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 856 Query: 898 RESE 901 E++ Sbjct: 857 VETD 860 >gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA] gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA] Length = 848 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/895 (42%), Positives = 560/895 (62%), Gaps = 88/895 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + S+ I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRILF M ++G+ K Y Sbjct: 5 EGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G++GI+ AY TG+G I++R Sbjct: 185 HNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ + +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+VI Sbjct: 245 KAEIEEEN-NRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+ +VILN LY++T +Q F V M+AL +P+ L +L ++ F++EVV RR Sbjct: 304 ELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AILE+RL RLTGL RD I E L I IL+ Sbjct: 412 --------------FQLSEKQAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +LL +IK EL+ +K+ + RRT I + + D++ ED I E++V+T++H GY+KR+ Sbjct: 458 SEEKLLSVIKDELIEIKNRYNDERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y +QRRGG+G + +++DFV + +VSTH+ VLFF++ G VYK + + +P Sbjct: 518 ADTYSSQRRGGRGIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G +IN++++ Q E+I T++ +D N ++ TK G V++ LS+F + ++G Sbjct: 578 AKGTNIINLIAIEQDEKIETVLSVKDD---VNEGFLFMGTKQGLVKKTPLSEFKNLRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L V+ + DI++ T+ G +RF + +R GR + GVR I+L K Sbjct: 635 LIAINLRDGDELLKVKITRGDADIVIVTQDGNAIRFNETDVRPM-GRTASGVRSINLRKD 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M D +VEG Sbjct: 694 DIAVCM---------------------------------------DIAVEG--------- 705 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +L +SE GFGKRT +++ R G G+ +S+ + G ++ +D+ Sbjct: 706 -----EDLLVISENGFGKRTPITEYKRQKRGGTGLITYKLSE--KTGKVIGATICKIDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++L++ G IR+ V++I + SR+T GV + T ++E++ ++ +I S +D+ E Sbjct: 759 LMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGS--IDDKE 811 >gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046] Length = 832 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 562/890 (63%), Gaps = 92/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S +IT E+++S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Y K A Sbjct: 9 IESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDT+D+ PNYDGS EP+VL ARYPN+LVNG GIAVGMATNIP H+L Sbjct: 129 SKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHHL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +DG +AV DNP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGS+ IR Sbjct: 189 GETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIRAKVE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR G R+VIE++ Sbjct: 249 IEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN L++ T++QS F VNM+AL +P+ +L +L ++ ++ V+ RRT + Sbjct: 309 RDANANVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKRRTAF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ ++DE++ IIR S + E AR +LM+R +N Sbjct: 369 ELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMER-FN------------ 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RL+GL R+ I E L I E IL+ + Sbjct: 416 -------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEA 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554 +++ II+ E+ +K+ RRT I G L+M EDED I RE+ V+T++H GY+KR+ + Sbjct: 463 KVVEIIRTEMTDIKERYSDERRTEITAGGLEMIEDEDLIPRENSVLTLTHNGYIKRLAAN 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P QA+ Sbjct: 523 TYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFGRQAK 582 Query: 615 GKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G ++N+L++++GE +T ++ F ED Y +F TK G +R + F I + Sbjct: 583 GLPIVNLLNIDKGEHVTAMIRVTEFKED------AYFIFTTKTGVTKRTPVDQFANIRTN 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D+++SV +I++ T G VRF IR GR++ GVRGI L + Sbjct: 637 GLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDDIRSM-GRSAAGVRGIKLRE 695 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+ M I+ E Q Sbjct: 696 GDFVVGMEIL----------------------------------------------EPGQ 709 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E IL V+E G+GKRT ++R+ +R G G++ ++ N G + AV V+ ++ Sbjct: 710 E-------ILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKN--GKMCAVKAVDGSE 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 I+L++ G LIR+ VN+I + R+T+GV + A+ E V +V R+++ E Sbjct: 761 DIMLITINGMLIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEE 810 >gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] Length = 900 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/925 (43%), Positives = 574/925 (62%), Gaps = 63/925 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +++ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ + A D E T Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA----------GGVEEEIEGEEVDDVVEAT 759 Query: 774 SLKNDSSVE----GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + +E GN++ +ILT +E G+GKRT ++ R +G+ Sbjct: 760 DGGESAVIEVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIG 807 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++ N G LV + D+++L+SD GTL+R +EI R T+GV + +K E Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865 Query: 890 RVVSVERIRES-----EIVDEAEST 909 ++ +VER+ S E+VDEA ++ Sbjct: 866 KLQAVERLDASLDEVDEVVDEAGAS 890 >gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] Length = 902 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/905 (44%), Positives = 572/905 (63%), Gaps = 46/905 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W + L Sbjct: 363 RRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + +D + +G ++G LSEVQ ILE+RL RLTGL ++ + +E L Sbjct: 423 LGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ + IL + LL +I+ EL+++++E RRT I D++ D I ED+VVT+ Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V +LP ARG+ +IN + L GER+ ++P E +N YV FAT++G V++ L Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATRNGTVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 S+F GKIA+ LD D ++ V + D+LL G+ VRF S +R GR + Sbjct: 660 SEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718 Query: 723 GVRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GVRGI + KG++V+S+ I + +D D + + T+ + Sbjct: 719 GVRGIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVV-------------DTTDGADAA 765 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 D + +GN++ +ILT +E G+GKRT ++ R +G+ ++ Sbjct: 766 VIDVADDGNVA------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTER 813 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 N G LV + D+++L+SD GTL+R +EI R T+GV + +K E++ +VE Sbjct: 814 N--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVE 871 Query: 896 RIRES 900 R+ S Sbjct: 872 RLDAS 876 >gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1] Length = 846 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/902 (43%), Positives = 551/902 (61%), Gaps = 71/902 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL D+ K+TVDF PNYDGS EP+++ AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+A++ NP+ +D L+EII PDFPT +I G G+K AY TGRG +V+RG Sbjct: 186 NLNEVVDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTMGVKEAYRTGRGRVVMRGR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H+E G+R+ +++ E+PYQVNK +++EKIAELV EK+I I+DLRDESD+ G RVVI Sbjct: 246 THVEDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +VILN LY+ T LQ F +NMVAL +P L +L+AF R EV+ RR Sbjct: 306 ELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFFGHRREVITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA +R HVL GLA+A+AN+DE++ +I+ +P P A++ LM R+W + +++++ Sbjct: 366 TVFELGKA-ERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLK 424 Query: 433 LI-------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + S G Y LS+VQ + IL++RL RLTGL +D I NE + I Sbjct: 425 RAAMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL+ R+ +I EL +++ + R+ IV D+ ED I +D+VVT+SH Sbjct: 485 ADLLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL YRAQRRGG+G+ +++DF+ +F+ +TH +L FSS G VY K Sbjct: 545 TGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYWLKYT 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLS 663 + + A +A L +G +P E DE N ++ AT G V++ L Sbjct: 605 KCRKAAASAV-QAYRQPLPAGRGREDQCHLPVKEFDE----NHFIFMATAQGTVKKTALV 659 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F R+G IA+ LD D ++ E NDI+L + G+ V F +R GRN+ G Sbjct: 660 EFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRNTRG 718 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L +VIS+ LI+ D Sbjct: 719 VRGMKLMPKQRVISL-------------------------LIAED--------------- 738 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +Q +L +E G+GKRT DFR S R +G++A S N G++V Sbjct: 739 ------------DKQTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRN--GSVVG 784 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 VND D+I+L++ G LIR V EIR RAT+GV + + ++E++ +E++ E++ Sbjct: 785 ARLVNDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVETDDA 844 Query: 904 DE 905 DE Sbjct: 845 DE 846 >gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 897 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/887 (44%), Positives = 563/887 (63%), Gaps = 84/887 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 6 ESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K LL DL KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 126 ARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G +++ NPDI + LME I+GPDFPT +ILG++GI+ A+ TGRGSI +R Sbjct: 186 HNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIILGKSGIRRAFETGRGSIQLRS 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311 + IE+ G R++IVVTE+PYQVNKA M+EKIAEL R+K+I I DLRDE+ R G RVV Sbjct: 246 RAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGVRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++++ A+A V+LN LY+ T LQ+ F VNM+AL +P+ +L L ++ ++ VV R Sbjct: 306 IDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKDALVEYLEHQKVVVRR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DRAH+L GL IA+ ++DE++R+IR S N + A L ++ Sbjct: 366 RTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQ----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL RD I E N L I+E IL Sbjct: 415 ---------------FKLSERQAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + +LL I++ EL+ V++ R+T I + GL D+EDED I E +V+T+SH Y+KR Sbjct: 460 ADEEKLLQIVRDELIDVRERYGDERKTEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Sbjct: 520 LPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G ++N + L+ E I+T++ + ES + Y+VFAT+ G V+R+ LS+F IN+ Sbjct: 580 RQSKGIPVVNAIELDNDESISTMIAVKDLESEED--YLVFATQKGRVKRSALSNFSHINK 637 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ DE+++V E DIL+ T +RFP +A+R GR + GV+GI+L Sbjct: 638 NGKIAISFKQDDELIAVRLTDGETDILIGTSHASLIRFPETALRPL-GRTAAGVKGITLR 696 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + ++T ++D Sbjct: 697 EDDKVVGL--------------------------------DVTKAESDDE---------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 715 ---------ILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERN--GNVVCITSVTGE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++V++ G +IR+ V +I RA +GV + +++ V +V ++ Sbjct: 764 EDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810 >gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905] gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905] Length = 821 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/895 (43%), Positives = 569/895 (63%), Gaps = 92/895 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+E G+ ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K Sbjct: 3 EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP+VL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ +NP I + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+ Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ + +E I+V E+PYQVNKA ++EKIAELVR+K+I I +LRDESDR+G R Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+++ A+A+V+LN LY+ T++QS F +NM++L +P+ L +L ++ ++ ++ Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R +N Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RL+GL R+ I E L + I E Sbjct: 416 -------------------LSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL+ ++++ II+ E+L +KD RRT I G ++M EDED I E+ VVT++H GY+ Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR+Q+RGG+G G+ ++DFV L STH ++LFF+S G V++ K + +P Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 A+G ++N+L++++GE++T ++ F ED Y +F TK G +R +S F Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDEDA------YFIFTTKTGITKRTPVSQF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L D+++SV + I++ T+ G VRF IR GR + GVR Sbjct: 631 ANIRTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVR 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD+V+ M IV Sbjct: 690 GIKLRDGDEVVGMEIV-------------------------------------------- 705 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E QE IL V+EKG+GKRTS D+R+ +R G G++ ++ N G +VAV Sbjct: 706 --EPGQE-------ILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVK 754 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+ ++ ++L++ G LIR+ VN+I + R+T+GV + +E V +V ++ ++ Sbjct: 755 TVDGSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATVAKVEKA 809 >gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 934 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/952 (42%), Positives = 572/952 (60%), Gaps = 134/952 (14%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V+GC+A+I+N ++ +D LM I GPDFPTGA+I GR GI AY TGRGS+ +R + Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKAE 247 Query: 256 IE---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E KTS RE I+V E+PYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VI Sbjct: 248 VEVDDKTS--RETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG S +++LN LY++T LQ+ F +NMVAL+ +P+ L IL AF+ R EVV RR Sbjct: 306 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ +L+ R W ++ +++ Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 425 Query: 433 LIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 D + + I +G +L+E Q +AIL+LRL +LTGL I E SL Sbjct: 426 KAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I E L IL+S RL+ +I+ ELL+V+++ RRT I ++ ED I ED+VVT+S Sbjct: 485 IAELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK P++ Y AQRRGG+G+S +++EDFV L + +TH ++L FS+ G VY KV Sbjct: 545 HQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 ++LP S ARG+ +IN+L L +GERIT I+P E ++ YV FAT G V++ LS Sbjct: 605 YQLPEASRGARGRPIINLLPLEEGERITAILPVKE---YADDKYVFFATADGTVKKTSLS 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708 F + SG A+ L DE++ V+ N+I+L + G+ VRF Sbjct: 662 AFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVS 721 Query: 709 ---------------------------PISAIRVFAG-----RNSVGVRGISLAKGDQVI 736 + F G R + GVRGI L GD+V+ Sbjct: 722 DDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKVV 781 Query: 737 SM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 S+ AI+ + Y +R ++ + R T+ + S+K D Sbjct: 782 SLIVPRGEGAILTATENGYGKRTALTEYPTKSR-----GTQGVRSIKVDE---------- 826 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 R+GK I A V+D Sbjct: 827 --------------------------------RNGKVIDA---------------IQVDD 839 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 DQI+L+++ GTL+R V+E+ I R T GV + T +DE VV ++RI ES+ Sbjct: 840 TDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESD 891 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 P R + + L G+++ +++ P E + ++ AT++G +R L+++ +R Sbjct: 761 PMGRTAGGVRGIRLLNGDKVVSLI-VPRGEGA-----ILTATENGYGKRTALTEYPTKSR 814 Query: 671 S--GKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G ++K+D R+ +++ + I+L T G VR +S + + GRN+ GVR I Sbjct: 815 GTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGTLVRTRVSEVSII-GRNTGGVRLI 873 Query: 728 SLAKGDQVISMAIVLHADADYDE 750 + + V+ + + +D + ++ Sbjct: 874 RTGEDETVVGLQRIAESDEEEND 896 >gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] Length = 899 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/925 (44%), Positives = 576/925 (62%), Gaps = 63/925 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQAAQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL++V++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ + A G EEI Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA---------------------GGVEEEIE 748 Query: 774 SLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + D VE E +++ + +ILT +E G+GKRT ++ R +G+ Sbjct: 749 GDEVDDVVEATDGGESAV-IEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIG 807 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++ N G LV + D+++L+SD GTL+R +EI R T+GV + +K E Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865 Query: 890 RVVSVERIRES-----EIVDEAEST 909 ++ +VER+ S E VDEA ++ Sbjct: 866 KLQAVERLDASLDEVDEGVDEASAS 890 >gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] Length = 808 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/889 (43%), Positives = 559/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ +N Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK-FN------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 414 ------------------LTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 899 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/925 (44%), Positives = 576/925 (62%), Gaps = 63/925 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD QEP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + I Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++++F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------- 423 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422 Query: 424 -------ASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G LSEVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------QGFYQLSEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLGVIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V +LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ + A G EEI Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSLIVAERA---------------------GGVEEEIE 748 Query: 774 SLKNDSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + D VE E +++ + +ILT +E G+GKRT ++ R +G+ Sbjct: 749 GDEVDDVVEATDGSESAV-IEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIG 807 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++ N G LV + D+++L+SD GTL+R +EI R T+GV + +K E Sbjct: 808 IQTTERN--GKLVRAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 865 Query: 890 RVVSVERIRES-----EIVDEAEST 909 ++ +VER+ S E VDEA ++ Sbjct: 866 KLQAVERLDASLDDVDEGVDEASAS 890 >gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 843 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/896 (44%), Positives = 566/896 (63%), Gaps = 68/896 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT ++I +E+ +SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +G WN+ Y K Sbjct: 6 KEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRNYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+Y+ + RMAQ + +R L++GQGNFGSVDGDP AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A+ LL DL K+TVD+ NYDG+ P +L AR PN+LVNG GIAVGMATNIP H Sbjct: 126 RMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A IDN DI ++ LM+ I GPDFPT A+I G+K AY+TGRG I IR Sbjct: 186 NLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDSGGLKEAYSTGRGKIYIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE RE IV+ EIPYQVNKA +LEKIAEL + KRI I +LRDESD+ G R+V+ Sbjct: 246 SEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGMRIVV 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR A ++VILN LY TSLQ+ F +NMVAL+ +P+ +L IL AFV R VV+RR Sbjct: 306 EIKRDAISEVILNNLYSLTSLQTSFGINMVALHQGQPKIMSLKDILSAFVCHRRAVVIRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430 + L KAR R H+L GLAIA+ N+D V+++IR S + A L+ SWN ++ D+ Sbjct: 366 VTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVFDMKQ 425 Query: 431 ---IDLIDDSSYTIGS---DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 I+L+ + + + L++ Q +AIL+L+L +LT L + + E +SL +I Sbjct: 426 RTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSLLEKI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 K + IL L+ +I+QELL +++E + RRT I + ++ E+ I ++D+VVT+S+ Sbjct: 486 KNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDVVVTLSY 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y KV+ Sbjct: 546 QGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRIYWMKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 RLP S +RGK +IN+L L+ ERIT I+P + V AT G V++ L++ Sbjct: 606 RLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQ---VFMATSSGVVKKTPLTE 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G IA+ L+ DE++ + N+++L T G+ VRF + +R GR+++GV Sbjct: 663 FSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRS-VGRSAIGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +GI L +GD+V+S+ I K+ SS Sbjct: 722 KGIHLLQGDRVVSLIIP----------------------------------KDKSS---- 743 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ILTV+ GFGKRT+ ++ I +R+ +G+ + V++ N G ++ Sbjct: 744 ---------------ILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERN--GNVIGA 786 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 VN +DQI++++D G L+R V+E+ I R T+GV++ TA +E VV ++ + ES Sbjct: 787 VQVNQSDQIVMITDLGRLVRTRVSEVNIIRRNTQGVMLIRTACNECVVGLQCVVES 842 >gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045] Length = 893 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/900 (44%), Positives = 563/900 (62%), Gaps = 88/900 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +++ NPDI ++ LME I+GPDFPT ++LG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KARDRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I +E N L IKE +IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ DEDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G +IN + L E I+T++ + ES + Y+VFATK G V+R+ LS+F +IN++GK Sbjct: 583 KGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSRINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V T DIL+ T +RF S +R GR + GV+GISL +GD Sbjct: 641 IAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + + AD++ Sbjct: 700 TVVGLDV---ADSE---------------------------------------------- 710 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 711 --SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909 ++V++ G +IR+ V++I RA +GV + + V +V ++ E E DEA+ + Sbjct: 767 MVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADEAQQS 826 >gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42] Length = 808 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRD--LISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26] gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79] gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58] Length = 808 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/889 (43%), Positives = 557/889 (62%), Gaps = 89/889 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE I + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ + +K Sbjct: 2 EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY Sbjct: 62 YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K + LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG GIAVGMAT+I Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V +IDNP+ +D L++ ++GPDFPT A+I+G+ I AY TGRG + + Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ ++QI+VTEIPYQVNKA ++E+IAELV+EKRI I+DLRDES+R G R+ Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A+A+++LN LY+++ ++ FS+ M+AL +P L IL ++ +E+VV Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA RAH+L GL IA+ N+D V+ +IR S + A+ L+++ Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AIL++RL RLTGL RD I E L +I +I Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ LL +IK E+ +K+ RRT I EG +DM D I E++ +T++H GY+ Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDM--RDLISDEEIAITLTHFGYI 513 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P Y++Q+RGG+G S + R+EDFV L +TH+ +LFF++ G V+K + +P Sbjct: 514 KRLPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPE 573 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G QA+G A++N+L L+ E+I T++P + + N Y++ ATK G V++ K +F I Sbjct: 574 GKRQAKGTAIVNLLQLSADEKIATLIPI---DGNDENEYLLLATKKGIVKKTKREEFKNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N+SG IA+ L DE++ VE + ++LL TK G +RF + IR + GR ++GV+GI+ Sbjct: 631 NKSGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIR-YMGRTAMGVKGIT 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+K D V+SM L S T+ + KN Sbjct: 690 LSKEDFVVSM------------------------NLCSKGTDVLVVSKN----------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 GFGKRT+ ++R R+GKGI+ ++S+ + G +V VN Sbjct: 715 ------------------GFGKRTNIEEYRSQIRAGKGIKTYNISE--KTGTIVGADMVN 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I++++ G LIR+ VNEI + R T GV + T + VVS+ +I Sbjct: 755 EDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKTNDEVNVVSIAKI 803 >gi|167038685|ref|YP_001661670.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514] gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513] gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514] gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513] Length = 807 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/891 (44%), Positives = 557/891 (62%), Gaps = 86/891 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE++ + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RY Sbjct: 63 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+ Sbjct: 183 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +V Sbjct: 243 RAKAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV Sbjct: 302 VIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +AI+++RL RLTGL R + +EL L +IKE I Sbjct: 414 ------------------LSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R Sbjct: 576 RQAKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ DE+++V+ E +I++ T G +RF IR GR + GV ISL Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M +V H ++ ++ TE+ + D + E R Sbjct: 692 EDDEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRL 727 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q T + KG R+S ++GK LV++ VN Sbjct: 728 Q----------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+ +++S G LIR+ V++I R T+GV + +RVVS RI E Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807 >gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] Length = 835 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/890 (44%), Positives = 550/890 (61%), Gaps = 84/890 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ +V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +NK Y Sbjct: 4 EQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYK 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YD + R+AQD+++R L++GQGNFGS+DGD AA RYTE Sbjct: 64 KSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH LL DL K+TVDF PNYD S QEP+VL ++PN+LVNG GIAVGMAT IP Sbjct: 124 VRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG VA+ID+P +D + L +I GPDFPT ILGR GI+ AY TGRG + +R Sbjct: 184 HNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRA 243 Query: 253 VSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + +EK RE+IVVTEIPYQVNKA ++EKIAELV+ ++I I+DLRDESDR+G RVV Sbjct: 244 RALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELK+ +VILNQLY+ T++QS F + M+A+ +P +L +L+ F+ R+E+V R Sbjct: 304 VELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R + L KA ++AH+L G IA+ NLDEV+ II+ S NP A++ LM+R Sbjct: 364 RCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMER----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AIL++RL RLTG+ RD I E + I +IL Sbjct: 413 ---------------FALSEIQAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S +L IIK EL ++++ PRRT IV+ D+ ED IV EDMVVTVSH GY+KR Sbjct: 458 ASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRN 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 +S+YR+QRRGGKG +G+ ++EDFV LFI STH+ VL F+ G VY KV +P G Sbjct: 518 AVSLYRSQRRGGKGVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RGKA++N+L L GE +T+I+P E Y++FAT++G V++ L + Sbjct: 578 ASRGKAIVNLLQLQSGENVTSILPVRE---FTEGRYIIFATQNGIVKKTDLMAYANPRSG 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ +D D ++S E D+LL ++ G+ +RFP R GR S GVRG++L Sbjct: 635 GIIALTIDEGDRLVSTRLSDGEMDVLLASQNGKAIRFPEKDARAM-GRTSRGVRGMALEG 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQVI M +V +D + +H +R N+ E R Q Sbjct: 694 DDQVIGMEVV--SDTTAATLVTVTEHGYGKRT--------------------NLDEYRQQ 731 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 R GKGI S+ N G +V + +ND+ Sbjct: 732 -----------------------------GRGGKGIITIKTSERN--GKVVDIKLINDDF 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ ++D G ++R V ++ + R T+GV + ER+V+V ++ E E Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKE 810 Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 55/98 (56%), Gaps = 4/98 (4%) Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFP 709 +HG +R L ++ Q R GK I +K R+ +++ ++ + D++ T G+ +R Sbjct: 716 EHGYGKRTNLDEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTR 775 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++ + V GRN+ GVR + L G++++++A + + D Sbjct: 776 VADLSVI-GRNTQGVRLMVLEPGERIVAVAKLAEKEED 812 >gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus] Length = 894 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/902 (44%), Positives = 562/902 (62%), Gaps = 91/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRARAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVT+IPYQVNKA M+EKIAELVREK+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A+VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I NE N L I E +IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADD 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G +IN + L+ E I+T++ EDE S Y+VFATK+G V+R+ LS+F IN++ Sbjct: 583 KGIPVINAIELDNDETISTMIAVRNLEDEDS----YLVFATKNGIVKRSALSNFSHINKN 638 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+ DE+++V DIL+ T +RF +++R GR + GVRGISL + Sbjct: 639 GKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISLRE 697 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ + V HAD+ Sbjct: 698 DDVVVGLD-VAHADS--------------------------------------------- 711 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + VN + Sbjct: 712 -----EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNGEE 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAES 908 +++V++ G +IR+ V +I RAT+GV + D+ V +V ++ E E EA Sbjct: 765 DLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQ 824 Query: 909 TE 910 TE Sbjct: 825 TE 826 >gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] Length = 848 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/890 (42%), Positives = 557/890 (62%), Gaps = 86/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + K A Sbjct: 7 LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYTE ++ Sbjct: 67 RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEAKM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A ++ D+ KDTVD N+D + +EP VL R P +L+NG GIAVGMATN+P HNL Sbjct: 127 RKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG A ID+ DID++ LME ++ PDFPTG I G G++ A+ TGRG +V+RG + Sbjct: 187 SEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRGKAV 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G RE +VVTEIPYQVNKA M++K A+LV EK+I I+ +RDESDR G R+V LK Sbjct: 247 FEEVQG-RECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVYILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LN LY+YT+LQS FSVN +AL +PE L ++ FV R EVVVRRTKY Sbjct: 306 RDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVRRTKY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA N+DEV+ +IR S N + AR +LM+R Sbjct: 366 ELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMER--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q +AI+E+RL +LTGL +D +R+E + L I++ DIL + Sbjct: 411 -----------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + IIK EL +KD+ RR+ I DM ED I E +V+T+SH GY+KR PL+ Sbjct: 460 RRMQIIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG G+ R+EDF+ D+F+ + H ++FF+ G + +V+ +P GS ++G Sbjct: 520 YKTQNRGGVGQKASTTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + +G Sbjct: 580 RAIQNLINIEPDDKVKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRINGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731 A+ + DE+L + T +++I+L K G+C+RF S R GR++ GVRGI LA K Sbjct: 640 NAITIKEDDELLEAKLTTGDSEIMLAVKSGKCIRFEESKTRPM-GRSASGVRGIRLADEK 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V + D+D Sbjct: 699 TDEVVGMVVVNNNDSD-------------------------------------------- 714 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL VSE G+GKR+S D+R++NR GKG++ V+ ++ G LVA+ V D+D Sbjct: 715 --------ILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVT--SKTGELVAIKNVTDDD 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++++ G IR+ V +R+ RAT+GV + + D+ + +V ++++ E Sbjct: 765 DLMIINKSGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDE 814 >gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70] gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70] Length = 825 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/892 (43%), Positives = 558/892 (62%), Gaps = 88/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ENQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A I GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEVVD +A+ NPD+ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+ S +E I+V E+PYQVNKA ++E+IAELVREK+I I DLRDESDR G R Sbjct: 243 LRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A++ VILN LY++T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM++ Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II+ EL +K+ + RRT IV G+ + +DED I RE++V+T++H GY+ Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S Y++Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARG +IN+L L++ E I TI+P + +NLY+ F TK G +R+ LS F I Sbjct: 577 FGRTARGIPIINLLELDKDEWINTIIPI--NNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV+ I++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 635 RNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTM-GRSATGVKAIT 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD+V+ M I+ E+ Sbjct: 694 LEDGDEVVGMEIL---------------------------------------------ED 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 C +L V++ G+GKRT + ++RI +R GKG++ ++++ N G++VAV V Sbjct: 709 DCD--------VLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKN--GSVVAVKTVT 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERI 897 + ++L++ G LIR+ V++I R T+GV + + D E V +V ++ Sbjct: 759 GEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKV 810 Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%) Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIV 583 +++ ++DC V +VVT + GY KR P S YR Q RGGKG ++ + V + V Sbjct: 703 MEILEDDCDV---LVVTKN--GYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVAVKTV 757 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 + ++ ++ G + + V + +G LI + ++ E + T+ P Sbjct: 758 TGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKVP 811 >gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] Length = 826 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/888 (44%), Positives = 554/888 (62%), Gaps = 87/888 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+GM ++G +K Y K AR+ Sbjct: 24 VQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSARVV 83 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+AAIYD + RMAQD+SLR L++GQGNFGS+DGD AA RYTE RL++ Sbjct: 84 GDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEVRLERI 143 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L DL K+TVDF PN+D + +EPVVL AR PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 144 AEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHNLGEI 203 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDG +AVIDNP+I+ L+ ++GPDFPT I G+ GIK AY TGRGSI +R + I Sbjct: 204 VDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAKAEIVD 263 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +G + I+VTEIPY VNKA ++E IA+LV++K+I I+DLRDESDR G R+VIELK+ A Sbjct: 264 ENG-KMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIELKKAA 322 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+VILNQL+++T ++S F VN +AL P +L + F+ R+EVV RR+++ L Sbjct: 323 NANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRSQFELK 382 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA+ R H+L GL IA+ N+D+ VRIIR S N + A+ LM++ Sbjct: 383 KAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYG---------------- 426 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LS+ Q+RAIL++RLARLT L R I +E L EI ++L+S +L Sbjct: 427 ----------LSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVL 476 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK ELL +K + RRT+IVE ++ DED I E++VVT+S+ GY+KR+P+ YR Sbjct: 477 DIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRT 536 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKA 617 QRRGG G G+ ++EDFV DLF+ STH ++LFFS+ G VY KV+ +P S QARGKA Sbjct: 537 QRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKA 596 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +IN++++ GE I ++P ++ + ++V T+ G +++ LS F I +G IA+ Sbjct: 597 IINLINIEPGEAINAMIPI---KTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIG 653 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L+S DE++SV+ ++L+ T+ G+C RF S +R GR ++GV GI L + Sbjct: 654 LESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTM-GRPAMGVIGIRLTE------ 706 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 ND + E+ Sbjct: 707 ---------------------------------------NDKVI--------AMEIVSPG 719 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q +LT+ E GFGKRT ++ +R G+G+ + N GA+VAV V +DQI++ S Sbjct: 720 QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRN--GAVVAVISVMPDDQIVIAS 777 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +G + R+ V +I R T+GV + ++ VV+V R+ + DE Sbjct: 778 KEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825 >gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2] gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2] Length = 870 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/887 (43%), Positives = 544/887 (61%), Gaps = 86/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ ++SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y Sbjct: 4 QEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGD PAA RYT Sbjct: 64 KKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K AH +L DL K+TVDF PNYD + EP VL ++P +LVNG GIAVGM TNIP Sbjct: 124 EVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+GEVV G +A+++ PDI ++ LM I GPDFPT I GR GI AY TGRG I +R Sbjct: 184 PHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIYGRKGIHEAYTTGRGIITVR 243 Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E S + E IVVTE+PYQVNKA ++EKIAEL+R K I + +RDESDRQG R+ Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I LKR DV++NQLY++T++ + F + +A+ +PE FTL +L+ F+ R V++ Sbjct: 304 AIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNRPELFTLKELLEQFLNHRRSVII 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + KA DRAH+L GL A+ NLD VV +IR S +PE A+ L+Q Sbjct: 364 RRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQ----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + L+++Q +AILE+RL RLTGL RD I E L ++ +I Sbjct: 413 ---------------SFELTQIQAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LSS + IIKQEL +KDE RRT+IVE ++ ED I EDMVVTV+ GY+KR Sbjct: 458 LSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+++Y +Q RGGKG++ + +DEDFV LF+ STH + LF ++LG VY+ KV+ LP+ Sbjct: 518 NPITLYASQHRGGKGKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAG 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 + GKA++N+L+ QGE++ T++ PE + YVV ATK G V++ L + + Sbjct: 578 RTSLGKAIVNLLNFEQGEKLATVLTVPE---FVEDRYVVMATKLGRVKKTDLMAYSRPRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G I +KL DE+++ + DI L ++ G+ +RF + +R A R S+GVRG+ + Sbjct: 635 GGLIGIKLADDDELIAAGITDGKTDIFLGSEGGKVIRFDENDVRTTA-RGSMGVRGMRID 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 G V+ M ++ H Sbjct: 694 PGSCVVGMEVLNHG---------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +LTV+E G+GKRT ++R R GKG+ + S+ N G +VA+ V D Sbjct: 708 -------QTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERN--GKMVALLLVEDE 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D+++LV+D G LIR + +I + SR T+GV + + + E+++ R+ Sbjct: 759 DELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGEKLIGAARL 805 >gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435] gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus haemolyticus JCSC1435] Length = 899 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/902 (44%), Positives = 561/902 (62%), Gaps = 91/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G + + NPD+ + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRARAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVT+IPYQVNKA M+EKIAELVREK+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A+VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I NE N L I E +IL+ Sbjct: 415 ------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEILADD 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I + GL D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR+Q RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G +IN + L+ E I+T++ EDE S Y+VFATK+G V+R+ LS+F IN++ Sbjct: 583 KGIPVINAIELDNDETISTMIAVRNLEDEDS----YLVFATKNGIVKRSALSNFSHINKN 638 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA+ DE+++V DIL+ T +RF +++R GR + GVRGISL + Sbjct: 639 GKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISLRE 697 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ + V HAD+ Sbjct: 698 DDVVVGLD-VAHADS--------------------------------------------- 711 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + VN + Sbjct: 712 -----EDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNGEE 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAES 908 +++V++ G +IR+ V +I RAT+GV + D+ V +V ++ E E EA Sbjct: 765 DLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEAAQ 824 Query: 909 TE 910 TE Sbjct: 825 TE 826 >gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170] gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170] Length = 844 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/900 (42%), Positives = 560/900 (62%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D S QEP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA IDN DI++D L+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ G RE I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR+G RVV Sbjct: 243 AKAVIEEVQG-RECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+YT+LQS FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA DRAH+L GL IA N+DEV+ IIR S N + AR LM+R Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R+E + I + DIL Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK ELL VKD+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 DRKERRMQIIKDELLEVKDKYGDERRSEINFAGGDLSIEDMIPNEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE NN +V+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + DE+L + T ++I L K G+ +RF S R GRN+ GVRGI L Sbjct: 636 QNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGIRL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V ++ E N Sbjct: 695 ADDNDEVIGMVSV-------------------------------------NNFEDN---- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR++ D+R++NR GKG++ +++ + G LV++ V+ Sbjct: 714 -----------ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITE--KTGGLVSIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907 D D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ ++ + V+E + Sbjct: 761 DADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEEVD 820 >gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] Length = 822 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/882 (43%), Positives = 558/882 (63%), Gaps = 87/882 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + +E I+V+E+PYQVNKA ++E+IAELVRE++I I DLRDESDR G R Sbjct: 243 LRAKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G ++ ++DED I E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L L++ E I ++P E+ + Y+VF+TK G +R+ LS F I Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+V+SM EI +D Sbjct: 693 LDDNDEVVSM--------------------------------EILEDHHD---------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V++KGFGKRT + ++R+ +R GKG++ +V++ N G++VAV V Sbjct: 711 -----------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERN--GSVVAVTTVV 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889 N+ +++++ G LIR+ V++I R +GV +I + +DE Sbjct: 758 GNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDE 799 >gi|297543508|ref|YP_003675810.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 805 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 3 EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RYTE Sbjct: 63 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+R Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +VVI Sbjct: 243 KAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV RR Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG---------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AI+++RL RLTGL R + +EL L +IKE IL+ Sbjct: 412 ----------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR+P Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Q Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R+G Sbjct: 576 AKGTAIVNLIQIGQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ DE+++ + E +I++ T G +RF IR GR + GV ISL + Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRED 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M +V H ++ ++ TE+ + D + E R Q Sbjct: 692 DEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRLQ- 726 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 T + KG R+S ++GK LV++ VN D+ Sbjct: 727 ---------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPEDE 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++S G LIR+ V+EI R T+GV + +RVVS RI E Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805 >gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 884 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] Length = 844 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/866 (44%), Positives = 546/866 (63%), Gaps = 86/866 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 9 VTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+ + RMAQD++ R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTESRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDG +EPVVL AR+PN+LVNG GIAVGMATNIP H L Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++DG +A+ PDI + LMEII GPDFPT +ILGR+GI+ AY TGRGSI +R Sbjct: 189 GEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSITLRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE S +E I+V EIPYQVNKA ++EKIAELVR+K++ I DLRDESDR G R+VIE++ Sbjct: 249 IETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A VILN LY+ T+LQ+ F +NM+AL +P+ L LK ++ ++ V+ RRT++ Sbjct: 309 KDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ +LDEV+ +IR S E AR LM + Sbjct: 369 ELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQ--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E SL I E IL+ Sbjct: 414 -----------FELSDKQAQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II++EL +K+ + RRT IV G ++ +EDED I RE++V+T++H GYVKR+P+S Sbjct: 463 KVLEIIREELTEIKERFNDERRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQ+RGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P S A+ Sbjct: 523 TYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPEFSRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N+ E + ++P E W ++ F TK G +R+ L+ F I +G I Sbjct: 583 GIPIINLLGINKDEWVNAVIPVEEFVDEW---FLFFTTKEGISKRSPLTSFGNIRNNGLI 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV +I++ TK GQ +RFP + +R GR + GV+GI+L D+ Sbjct: 640 ALNLREGDELISVRLTDGSKEIIIGTKNGQLIRFPETDVRSM-GRTATGVKGITLDSDDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M ++ EE + Sbjct: 699 VVGMEVL---------------------------------------------EENSE--- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL V++KG+GKRT ++R+ R GKGI+ +++ N G +VAV V + I+ Sbjct: 711 -----ILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKN--GTIVAVKVVTGEEDIM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880 L++ G LIR+ V +I R T+GV Sbjct: 764 LITTGGVLIRMAVGDISTMGRNTQGV 789 >gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122] gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122] Length = 886 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9] gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9] Length = 805 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/889 (44%), Positives = 553/889 (62%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 3 EDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K + GEV+GKYHPHG+AA+YD L R+AQD+S+R LI+G GNFGS+DGDPPAA RYTE Sbjct: 63 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK Y TGRG IV+R Sbjct: 183 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVRA 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +IV+TEIPY V KA ++EKIAELVREK I I+DLRDESDR G +VVI Sbjct: 243 KAEIEEHHG-KTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVVI 301 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ + VILN+LY +T +Q F M+AL +P+ L I++ +V + +VV RR Sbjct: 302 ELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTRR 361 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L KA +RAH+L GL IA+ ++DEV+ IIR S A++ LM + Sbjct: 362 TKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFG---------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AI+++RL RLTGL R + +EL L +IKE IL+ Sbjct: 412 ----------------LSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILA 455 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L IIK+ELL +KD+ TPR+T IV +++ ED + ED+VVT++H GY+KR+P Sbjct: 456 DERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRMP 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L Y+AQ+RGGKG G+ R++DFV D+FI +TH +LFF++ G VY + +P Q Sbjct: 516 LDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQ 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N++ + QGE++T ++P + S + YVV TK G +++ + +F I R+G Sbjct: 576 AKGTAIVNLIQIAQGEKVTAVIPL---KKSQDIKYVVMCTKKGIIKKTSIEEFRSIKRNG 632 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ DE+++ + E +I++ T G +RF IR GR + GV ISL + Sbjct: 633 IIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRED 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M +V H ++ ++ TE+ + D + E R Q Sbjct: 692 DEVVEMDLV---------------HPGSEILVV---TEKGFGKRTD------LEEYRLQ- 726 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 T + KG R+S ++GK LV++ VN D+ Sbjct: 727 ---------TRAGKGI------IAIRLSEKTGK---------------LVSIRSVNPEDE 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++S G LIR+ V+EI R T+GV + +RVVS RI E Sbjct: 757 FMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805 >gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] Length = 830 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/882 (42%), Positives = 551/882 (62%), Gaps = 86/882 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M ++ EWNK Y K AR+ Sbjct: 11 ISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSARVV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YDA+ RMAQD+S+R +L++GQGNFGSVDGD PAA RYTE R+QK Sbjct: 71 GDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQKL 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L+D+ K+TVD NYD S EP+VL +R P +L+NG GIAVGMATNIP HNL EV Sbjct: 131 AHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 D A+IDNPD+ ++ALM+ + GPDFPT +I G GI YATGRG I +RG +EK Sbjct: 191 ADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIRVRGRVFVEK 250 Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 D E IVV E+PYQVNKA ++EK+AELV++K I I +RDESD++G R+ I LKR Sbjct: 251 GKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGLKRN 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ADV++NQLY++T L++ F +NM+A+ +PE TL IL+ F+ R+E++VRRT++ L Sbjct: 311 QFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEIIVRRTRFDL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA +RAH+L GL IA+ NLDEVV +IR S +P AR LM++ Sbjct: 371 RKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQ----------------- 413 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+++Q +AIL++RL +LTGL R+ I E +I +IL S + Sbjct: 414 ---------FGLTQIQAQAILDMRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIV 464 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L +IK+EL +K E RRT+I+ ++ ED I RE+MVVTVS GY+KR P+++YR Sbjct: 465 LDLIKKELADLKAEFGDERRTQIMGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYR 524 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGG+G++ + R++DFV LF+ S+H + LFF++ G V+ KV+ +P +RG A Sbjct: 525 KQRRGGRGKTAMGTREDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRASRGTA 584 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L+ N+GE + T++ PE L+V+ AT+ G V++ + D+ + G IA+ Sbjct: 585 IVNLLNFNEGEDLATVLSVPEFSPG---LFVLMATRKGMVKKTDIMDYSRPRSGGLIALG 641 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE+++V ++ L ++ G+ VRF S +R GR + GV+G++L K D V+ Sbjct: 642 LADGDELIAVRITDGSWNVFLGSQNGKSVRFLESDVRPM-GRLARGVKGMTLEKDDHVVG 700 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ H + Sbjct: 701 MEVLSHGNT--------------------------------------------------- 709 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++T++E G+GKRT ++ ++ R GKG+ +K N G +VA+ V ++D++++++ Sbjct: 710 --LMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRN--GKVVAILLVENDDELMIMT 765 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D+G LIR+PV + + SR T+GV + + E V R+ E Sbjct: 766 DRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLAE 807 >gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 892 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/899 (43%), Positives = 569/899 (63%), Gaps = 85/899 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I +I++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 6 ESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 126 ARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R Sbjct: 186 HNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311 + IE+ G R++IVV+EIP+QVNKA M+EKIAEL REK++ I DLRDE+ R G RVV Sbjct: 246 RAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGVRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV R Sbjct: 306 IDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVVVRR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DRAH+L GL IA+ ++DE++ IR S +E M+R Sbjct: 366 RTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETD----KEAMERLQ--------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 G LSE Q +AIL++RL RLTGL RD I +E N L I+E IL Sbjct: 413 -------------GRFKLSERQAQAILDMRLRRLTGLERDKIESEYNELIAYIEELRAIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKR 550 + +LL ++++EL V++ RR+ I G LD +EDED I E +V+T+SH Y+KR Sbjct: 460 ADEEKLLELVREELTEVRERFGDERRSEIQLGGLDQIEDEDLIPEEQIVITLSHNNYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S YRAQ RGG+G G+ +EDFV+ + +STH +VLFF++ G VYK K + +P S Sbjct: 520 LPVSTYRAQNRGGRGVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVPELS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G +IN + L E I+T++ + E + Y+VFATK+G V+R+ LS+F INR Sbjct: 580 RQSKGIPVINAIELENDESISTMIAVNDLEKE--DAYLVFATKNGIVKRSSLSNFSHINR 637 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ DE+++V D+LL T +RF S +R GR + GV+GI+L Sbjct: 638 NGKIAINFRDEDELVAVRLTDGTKDVLLGTSHASLIRFKESKLRPL-GRTAAGVKGITLR 696 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+++ +A+ TE+ Sbjct: 697 EGDELVGLAVA---------------------------TED------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E +L V+E G+GKRT ++RISNR GKGI+ +++ N G +V + V Sbjct: 711 -----SEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKN--GDIVCITTVTGE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + I++V+++G +IR+ V++I RA +GV + +++ V +V +++E ++ DE E T Sbjct: 764 EDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQE-DLEDELEGT 821 >gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489] gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489] Length = 851 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/898 (42%), Positives = 558/898 (62%), Gaps = 86/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N + Sbjct: 3 EGEKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D S +EP VL AR PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA IDN DI++D L+ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ G RE IVVTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR G R+V Sbjct: 243 AKATFEEVQG-RESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN L++YT+LQ+ FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGRPQLLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA DRAH+L GL IA N+DEV+ IIR S N + AR L++R Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I + DIL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R + IIK ELL VK++ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ANEERRMQIIKDELLEVKEKYGDERRSEINFAGGDLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + I L K G+ +RF S R GRN+ GVRGI+L Sbjct: 636 LNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V + D D Sbjct: 695 ADDNDEVVGMVSVHNFDDD----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+RI+NR GKG++ V+ ++ G LVA+ V Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVT--DKTGGLVAIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDE 905 D+D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ ++ + VDE Sbjct: 761 DSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDE 818 >gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11] gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46] Length = 886 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635] gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635] Length = 887 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTAHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-IDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] Length = 857 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/891 (43%), Positives = 553/891 (62%), Gaps = 58/891 (6%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M MG ++NK Y K AR Sbjct: 9 TAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 68 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG+ A YD + RMAQD+SLR L++GQGNFGSVDGD PAA RYTE R++ Sbjct: 69 VVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRME 128 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + AH LL+DL K+TVD NYDGS EP+VL +++PN+LVNG GIAVGMATNIP HNL Sbjct: 129 QLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLS 188 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG +A I NP I + L+ ++ GPDFPTG I GR GI Y TGRG + +R + I Sbjct: 189 EVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASI 248 Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTEIPYQVNKA ++ KIAELVREK++ I+D+RDESDR G R+VI+LK Sbjct: 249 ETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + VILN LY+ T +Q+ F +NM+A+ +P+ TL + F+ R E+V RRT + Sbjct: 309 RDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPKVLTLQDAIGHFIDHRREIVTRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L G IA+ LD V+ +IR S P AR LM ++ + + L Sbjct: 369 DLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKMGLPL 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + ++ + L+EVQ + IL LRL RLTGL RD I E + I +IL+S + Sbjct: 429 PAIHS-QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILASEA 487 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L II EL +K++ RRT IV+ ++ ED IV ED+VVTVSH GY+KR +S Sbjct: 488 EILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIKRTAVSQ 547 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG++G+ ++EDFV LF+ S+ +LFF+ G VY+ KV+ +P G RG Sbjct: 548 YRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEGGRATRG 607 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L+L + E+IT I+ + N ++ AT+ G V+++ L ++ I G IA Sbjct: 608 KAIVNLLNLQENEQITAILSVKGFDDERN---ILMATRLGVVKKSPLREYANIRSGGIIA 664 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D++++V D+LL ++ G+ +RF R GR S GVRG++L D V Sbjct: 665 VNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPM-GRVSRGVRGMTLEDDDVV 723 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M ++ + S G+ Sbjct: 724 IGMEVI------------------------------------NPSATGST---------- 737 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 I TV+E GFGKRT ++R+ +R GKGI ++ N G +V + V D + ++L Sbjct: 738 ----IFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTDENDLML 791 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++D+G ++R+PV + R T+GV + + ++ER+V+V ++ E + DE Sbjct: 792 ITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEG 842 >gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133] Length = 886 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1] gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] Length = 889 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 878 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G +D +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + D + DE Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++ +E E ++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 907 EST 909 E T Sbjct: 821 EHT 823 >gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 815 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/886 (42%), Positives = 555/886 (62%), Gaps = 86/886 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE + V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 9 EEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGLGLTPDKPY 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R L++G GNFGS+DGDP AA RYT Sbjct: 69 KKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGDPAAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 129 EARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG +A IDNP I + LM+ I+GPDFPTG +I+G+ GI+ Y TGRG I++R Sbjct: 189 PHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRETYETGRGKIIVR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ +G R +IV+TE+PY V K+ ++EKIAELVR+K I I+DLRDESDR G R+V Sbjct: 249 AKAEIEEHNG-RNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDESDRNGMRIV 307 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR + V+LN+LY +T +Q F M+AL P+ +L I++ +V + +V+ R Sbjct: 308 IELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEKYVDHQVDVITR 367 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA +RAH+L GL IA+ ++DEV+ +IR S A++ LM + Sbjct: 368 RTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDKFG--------- 418 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q++AI+++RL RLTGL R + +ELN L +I+E IL Sbjct: 419 -----------------LSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGIL 461 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++L IIK+EL +KD+ + R+T IV + +M+ ED + ED VVT++H GY+KR+ Sbjct: 462 ADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVVTMTHFGYIKRM 521 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL Y++Q+RGGKG SG+ R++DFV ++F +TH +LFF++ G VY + +P Sbjct: 522 PLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGR 581 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 QA+G A++N++ ++Q E+++ ++P + S YVV TK G +++ ++ DF +I +S Sbjct: 582 QAKGTAIVNLIQIDQDEKVSAVIPI---KKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKS 638 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+KLD DE+++V + +I++ T G C+RF + +R GR + GV ISL Sbjct: 639 GNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPM-GRQARGVIAISLRD 697 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M LI+ D E Sbjct: 698 DDYVVEMD------------------------LINEDNE--------------------- 712 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL V+E G+GKR+ ++R R+GKGI AT +++ + G LV++ V++ D Sbjct: 713 --------ILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQ--KTGKLVSIMSVSEKD 762 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++++S G LIR + +I R GV + +RVVS +I Sbjct: 763 ELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKI 808 >gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus aureus subsp. aureus JKD6159] Length = 886 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] Length = 865 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/893 (42%), Positives = 550/893 (61%), Gaps = 84/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV +NK Y K A Sbjct: 12 IIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLGVHYNKAYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YD + RMAQ+WSLR +++GQGNFGSVDGD PAA RYTE RL Sbjct: 72 RIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDSPAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A +L D+ KDTVDF+PN+D S QEP VL ++ PN+L+NG GIAVGMATN+ HN+ Sbjct: 132 KRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAVGMATNMAPHNI 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +A IDN DI + LM ++GPDFPTGA I G GI++A+ TGRG IV+R S Sbjct: 192 TEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIYGYQGIRSAFETGRGRIVLRSRST 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE TS +EQI+V+EIPY VNKAAM+EKIA +V EK+I I+D+RDESDR+G R+V +LK Sbjct: 252 IETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDESDREGMRIVFDLK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+LN L++Y+ LQS FSVN V L +P L ++ FV R EVV RRT++ Sbjct: 312 RDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGRPMTLNLKEMIMYFVEHRHEVVTRRTQF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LN+A RAH+L G IA+ +LDEV+++IR S +PE AR LM Sbjct: 372 ELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMT---------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +SE+Q +A+L+LRL RLTG+ RD I E + I +IL+S+ Sbjct: 416 ----------NFGMSEIQAKAVLDLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKE 465 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIKQEL +K+ RR+ IV D+ ED I E MV+T+SH GY+KR LS Sbjct: 466 LRMEIIKQELDEMKERYGDKRRSDIVHASDDINIEDMIPEEQMVITISHEGYIKRTALSE 525 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G G ++ DF LF+ STH +LFF+ G V+ KV+ +P G +G Sbjct: 526 YRTQGRGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTTKG 585 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++ + G+++ T++ D+ NN Y+V T+ G +++ L + + G Sbjct: 586 RAIQNVIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGGI 645 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732 A+ + D +L V+ + +++++ + G+ +RF S +R GR + GV+G++LA Sbjct: 646 NAITIHEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPM-GRTAAGVKGVTLAHDK 704 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ + V D T+L Sbjct: 705 DVVVGLVAVSSPD---------------------------TTL----------------- 720 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 L VSEKG+GKR+ D+R++NR GKG++ ++S+ + G LV++ VND Q Sbjct: 721 --------LVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISE--KTGDLVSILGVNDQYQ 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 I++++ G IR+ V+++R+ RAT+GV + + + SV + ++I+DE Sbjct: 771 IMIINKSGITIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVAKFEFTDIIDE 823 >gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G +D +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + D + DE Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++ +E E ++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 907 EST 909 E T Sbjct: 821 EHT 823 >gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A Length = 889 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] Length = 889 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A + L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] Length = 821 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/887 (43%), Positives = 550/887 (62%), Gaps = 88/887 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGE++DG +AV +N DI + LME I GPDFPT ILGR+GI+ AY +GRGSI Sbjct: 183 IPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+T +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 IRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A VILN LY+ T+LQ+ F +N++AL +P+ L L ++ ++ V+ Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LD V+ +IR S E AR L+++ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q +AIL++RL RLTGL R+ I E SL I E + Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKE 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ ++L II++EL +K+ + RRT IV GL +EDED I RE++VVT++H GY+ Sbjct: 457 ILANEEKVLEIIREELTEIKERFNDKRRTEIVTAGLETIEDEDLIERENIVVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ +DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P E DE LY+ F TKHG +R LS F Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDEK----LYLFFTTKHGISKRTTLSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+++V I++ TK G +RFP S +R GR + GV+GI Sbjct: 633 IRNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D V+ M I L++DS V Sbjct: 692 TLTDDDIVVGMEI----------------------------------LEDDSHV------ 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L V+E G+GKRT + D+R +R GKG++ +++ N G LV V Sbjct: 712 -------------LIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENN--GRLVTVKAT 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +++++ G LIR+ + +I I R T+GV + + E V +V Sbjct: 757 KGEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATV 803 >gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] Length = 846 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/898 (44%), Positives = 567/898 (63%), Gaps = 72/898 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G WNK Y K Sbjct: 6 KEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD + RMAQ + +R +LI+GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K ++ LL DL K+TVD+ NYDG+ + P VL AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+GC+A IDN +I +D LM+ I GPDFP+ AVI + +K AY TG+G I IR Sbjct: 186 NLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSELKKAYETGKGKIYIRAR 245 Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I RE I+V EIPYQVNK+ +LEKIAELV+ KRI I LRDESD+ G RVVI Sbjct: 246 AEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ++K A ++++LN LY T LQ F +NMVAL+ +P+ +L IL AF+ R V+ RR Sbjct: 306 DIKHDAISEIVLNNLYSLTQLQVSFGINMVALHHGQPKVMSLKDILSAFICHRRSVITRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-- 430 + L KA +R HVL GL IA++N+D V+ +IR S + A L +SW A+D+ ++ Sbjct: 366 ILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNMRK 425 Query: 431 ---IDL-----IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 IDL +D +++T + Y ++ Q RAIL+LRL +LT L D + E +SL Sbjct: 426 SISIDLLNSEWLDKNNFT--KNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLK 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 ++++ + L ++S L+ +I+QEL+S+K+E RRT I + ++ E+ I + D+VVT+ Sbjct: 484 KMEKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVVTL 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 S+ GYVK PL+ Y AQ+RGGKG+ +++EDF+T L I +TH +VL FS+ G +Y K Sbjct: 544 SYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYWMK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+RLP +RG+ +IN+L L+ ERITTI+P + V AT G V++ L Sbjct: 604 VYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYTKGHQ---VFMATSSGFVKKTAL 660 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + G IA+ L+ DE++ + N+++L T G+ VRF + +R GR++V Sbjct: 661 MEFSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSM-GRSAV 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+GI L +GD+V+S+ I KN SS Sbjct: 720 GVKGIHLLQGDRVVSLIIP----------------------------------KNKSS-- 743 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ILT+++ GFGKRT ++ + +RS KG+ + V++ N G +V Sbjct: 744 -----------------ILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERN--GNVV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+ +DQI++++D G L+R+ V+E+ I R TKGV++ TA DE VV ++R+ ES Sbjct: 785 GAVQVSHDDQIMIITDAGRLVRIRVSEVNIIKRNTKGVMLIRTACDEHVVGLQRVVES 842 >gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193] Length = 889 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus] gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189] Length = 887 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus] Length = 889 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + D + E ++ E Sbjct: 700 EVVGL---------------------------------------DVAHENSVDE------ 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052] gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052] Length = 828 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/901 (42%), Positives = 559/901 (62%), Gaps = 91/901 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ K Y Sbjct: 5 EGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E++DG + +IDNP+ + LM I GPDFPTGA I+G+ GI+ AY TG+G I++R Sbjct: 185 HNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKIIVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R I+VTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+VI Sbjct: 245 NAEIEEENG-RHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ V+LN LY++T LQ F + M+AL +P+ L IL+ +V F++EV+ RR Sbjct: 304 ELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM+R Sbjct: 364 TIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q++AILE+RL RLTGL R I E N L +I+ IL+ Sbjct: 412 --------------FELSEKQSQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +LL +IK+ELL +K+ R+++I + + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEEKLLDVIKEELLEIKNRYSDERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y +QRRGGKG + +++DFV L I STH+ VLFF++ G VYK + + + Q Sbjct: 518 ADTYSSQRRGGKGIQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQ 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G LIN++++ E+I T++ +++ ++ TK G V++ LS+F + ++G Sbjct: 578 AKGTNLINLIAIEPDEKIQTVLTVTDEKKEG---FLFMGTKQGIVKKTPLSEFKNLRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L V+ + +I++ T+ G V+F +R GR + GV+ I+L + Sbjct: 635 LIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSM-GRTASGVKAINLKED 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + D EE Sbjct: 694 DIAVCMDIAV-------------------------DGEE--------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L +SE G+GKRT ++++ NR G G+ +S+ + G L +D+ Sbjct: 708 -------LLVISENGYGKRTPIAEYKLQNRGGVGLITYKISE--KTGKLAGATICKVDDE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAE 907 ++L++ G IR+ V +I + SR+ GV + T +DE+VV++ +I +E+E DEAE Sbjct: 759 LMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETESGDEAE 818 Query: 908 S 908 S Sbjct: 819 S 819 >gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61] gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3] gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52] gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61] gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3] gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52] Length = 818 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/897 (43%), Positives = 561/897 (62%), Gaps = 90/897 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ +E I+VTE+PYQVNKA ++E+IAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY++T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMAR--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLVRLIAELRG 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G ++ +DED I +E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L L++ E I ++P ES +++ Y+VFATK G +R+ LS F Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ESEFSDERYLVFATKQGIAKRSPLSAFAH 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I Sbjct: 634 IRNNGLIAIHLREGDELISVRLTDGKKHLIIGTKNGMLIRFPETDVRAM-GRSATGVKAI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L GD+V+ M EI +D Sbjct: 693 TLDDGDEVVGM--------------------------------EILEDHHD--------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V++KGFGKRT + ++R+ +R GKG++ +V+ N G +VAV V Sbjct: 712 ------------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKN--GPVVAVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERIRESE 901 N+ +++++ G LIR+ V++I R +GV + + + E V +V ++ E E Sbjct: 758 VGNEDVMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKVPEEE 814 Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 763 RLISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 ++I + EI ND V G + + ++L +E ++T++ KG+ KR +R Sbjct: 466 QIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYR 525 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 R G+G++ ++ + + L+ + +D ++ ++KG + + EI R K Sbjct: 526 SQKRGGRGVQGMHTAEDDFVEHLLI---TSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAK 582 Query: 879 GVVIFSTA---KDERVVSVERIRESEIVDE 905 G+ I + KDE + ++ I ESE DE Sbjct: 583 GLPIINLLELDKDEWINAMIPI-ESEFSDE 611 >gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981] gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172] Length = 889 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 878 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + NE L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida] Length = 922 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/945 (42%), Positives = 577/945 (61%), Gaps = 123/945 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +H LL DL K+TVD+ PNYDG+ P V+ + PN+LVNG GIAVGMA NIP HNL Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V+GC+A+I+N ++ +D LM I GPDFPTGA+I GR GI AY TGRGS+ +R + Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKAE 247 Query: 256 IE---KTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +E KTS RE I+V E+PYQVNKA ++EKIAELV+EK++ I+ LRDESD+ R+V Sbjct: 248 VEVDDKTS--RETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KRG S +++LN LY++T LQ+ F +NMVAL+ +P+ L IL AF+ R EVV R Sbjct: 306 IEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KARDRAH+L GLA+A+AN+D ++ +IR S P A+ +L+ R W ++ ++ Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425 Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + D + + I +G +L+E Q +AIL+LRL +LTGL I E SL Sbjct: 426 EKAGDDAARPEWLEPEFGI-REGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLD 484 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E L IL+S RL+ +I+ ELL+V+++ R I ++ ED I ED+VVT+ Sbjct: 485 LIAELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDLITPEDVVVTL 544 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GYVK P++ Y AQRRGG+G+S +++E+FV L + +TH ++L FS+ G VY K Sbjct: 545 SHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKVYWLK 604 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP S ARG+ +IN+L L +GERIT I+P E ++ YV FAT G V++ L Sbjct: 605 VYQLPEASRGARGRPIINLLPLEEGERITAILPVKE---YADDKYVFFATADGTVKKTSL 661 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------PISAIRVF 716 S F + SG A+ L DE++ V+ N+I+L + G+ VRF P+ + + Sbjct: 662 SAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPMQPMLMS 721 Query: 717 A-----------------------------------------GRNSVGVRGISLAKGDQV 735 + GR + GVRGI L GD+V Sbjct: 722 SDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIRLLNGDKV 781 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S+ + G+ +T+ +N Sbjct: 782 VSLIVP------------------------RGEGAILTATEN------------------ 799 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 G+GK T+ ++ +R +G+R+ K++E G V++ V+D DQI+L Sbjct: 800 -----------GYGKGTALTEYPTKSRGTQGVRSI---KVDEDGK-VSIDQVDDTDQIML 844 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ GTL+R V+E+ I R T GV + T +DE VV ++RI ES Sbjct: 845 ITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAES 889 >gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1] gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1] Length = 896 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/909 (42%), Positives = 549/909 (60%), Gaps = 81/909 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Sbjct: 3 ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K +H LL DL K+TVDF PNYDG+ P VL AR P +LVNG GIAVGMATNI Sbjct: 123 TEIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE++DGC+AVIDN DI +D L++ I GPDFPTGA I GR GI AY TGRG I + Sbjct: 183 PPHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGAFINGRAGIIEAYKTGRGRIYM 242 Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R H E G+R+ IV TEIPYQ+NKA ++EKIAELV+EK++ I++LRDESD+ G R Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+RG + DV++N ++ T LQS+F +NMVAL +P+ + IL+ FV R EVV Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPQLLNIKQILECFVKHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+R H+L GLA+++AN+D V+ +IR SP A+ +++ SW D+ Sbjct: 363 TRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVA 422 Query: 430 LIDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +++ DD G DG +LS Q +AIL+LRL RLTGL D + E +L Sbjct: 423 MLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLI 482 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 I E L+ILS+ RL+ +I++EL VK+ RRT I+ D+ D I MVVT Sbjct: 483 ELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVT 542 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ GY K PL Y+AQRRGG+G+S M+DED + L + S+H +++ FS+ G VY Sbjct: 543 ISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVYWL 602 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-----------EDESSWNNL---- 646 +V+ +P+ S A+G+ ++N+L L +GE I+ ++P P +D+ S + + Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSDDAIVEAS 662 Query: 647 -YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 Y+ AT +G V++ + F + +G IA+ LD DE++ V ENDI+L + G+ Sbjct: 663 SYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIMLVSSSGKT 722 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +RF S +R GR + GVRGI L + +V+S+ + Sbjct: 723 IRFKESDVRAM-GRTAAGVRGIRLGEDAKVVSLIV------------------------- 756 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 +G+ C+ K + G G + ++S R+G Sbjct: 757 --------------PQDGSAVLMACENGYGKRTLVEDFPVYGRGGQ-GVIGIQVSERNGP 801 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 + A V + +E IIL++D+GTL+R V E+ R T+GV + Sbjct: 802 VVGAAQVDETDE---------------IILITDQGTLVRTRVTEVSCQGRNTQGVTLIRL 846 Query: 886 AKDERVVSV 894 DE +V + Sbjct: 847 TNDEHLVGI 855 >gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622] gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622] Length = 942 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/921 (43%), Positives = 569/921 (61%), Gaps = 95/921 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M +G N+ Y K A Sbjct: 24 LIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++++YDA+ R+AQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+ Sbjct: 84 RVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRM 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A LL D+ K+TVDF PNYD S +EP+VL +++PN+LVNG GIAVGM TNIP HN+ Sbjct: 144 ERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHNM 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ G + +IDNP + LME I GPDFPTGA+I GR GI AY TGRG + IR S Sbjct: 204 TEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIITGREGIVRAYETGRGQVTIRARSD 263 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + GDRE I+ +EIPYQVNKA ++EKIAELVREK++ I+D+RDESDRQG R+VIEL Sbjct: 264 IETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIEL 323 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A + V+LN LY TSL++ F M+A++G +P L +L F+A R +VV RRT+ Sbjct: 324 KRDAISQVVLNNLYAMTSLETTFGAVMLAIDGGQPRTLNLKEMLDRFIAHRRDVVTRRTR 383 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ--------------- 419 Y L KA R H++ GL +A +D VV +IR S +P+ AR LM Sbjct: 384 YELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFATL 443 Query: 420 RSWNASDIKDLIDLI------DDSSY---TIGSDGTMYLSEVQTRAILELRLARLTGLGR 470 + + K ++L+ ++ SY +G + SE Q + ILE+RL RLTGL R Sbjct: 444 QRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGF-SEGQAQNILEMRLQRLTGLQR 502 Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530 +++ EL L +I DIL++ LL +IK EL+ +++ RRT I + +M E Sbjct: 503 EELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGDKRRTEITGAVDEMTSE 562 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I E MVVT+SH GY+KR PL+ YRAQ+RGG+G++G +++DFV+ LF+ STH ++ Sbjct: 563 DLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLFVASTHAYLM 622 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLY 647 ++ G +Y KV ++P S +RGKA++N++ +GER+ ++ FPE N Y Sbjct: 623 PITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGERLAQVLVTRDFPE------NRY 676 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V F TK G V+R LS F + SG IA+ +D DE+++V DILL+T G +R Sbjct: 677 VFFVTKRGVVKRTDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDILLSTASGMSIR 736 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 FP + +R GR + GV+GI+L GD+V+ A V+ DA Sbjct: 737 FPETEVRSM-GRQAYGVKGITLEDGDEVVG-ADVVETDA--------------------- 773 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 ILTV+E G+GKRT ++R R GKGI Sbjct: 774 -------------------------------AILTVTENGYGKRTQEAEYRQQGRGGKGI 802 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D+ G +V + V + D+++LV++ G LIR+ V EI + R T+GV + + Sbjct: 803 --IDIKTTERNGKVVGLLQVKEADEVMLVTNGGMLIRMRVKEISVIGRNTQGVRLIALEN 860 Query: 888 D-ERVVSVERIRESEIVDEAE 907 + E+V+++ ++ ES DE+E Sbjct: 861 EQEKVMAISKLPES---DESE 878 >gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900] gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978] gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] Length = 904 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/896 (43%), Positives = 555/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DAD + SA L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] Length = 822 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/882 (43%), Positives = 557/882 (63%), Gaps = 87/882 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+D +A+ NP++ + LME I GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + + I+V+E+PYQVNKA ++E+IAELVRE++I I DLRDESDR G R Sbjct: 243 LRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL R+ I E + I E Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L II+ EL +K+ + RRT IV G ++ ++DED I E +V+T++H GY+ Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+Q+RGG+G G+ ++DFV L I STH +VLFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L L++ E I ++P E+ + Y+VF+TK G +R+ LS F I Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPI---ETFDDERYLVFSTKQGIAKRSSLSSFAHI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV + +++ TK G +RFP + +R GR++ GV+ I+ Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+V+SM EI +D Sbjct: 693 LDDNDEVVSM--------------------------------EILEDHHD---------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V++KGFGKRT + ++R+ +R GKG++ +V++ N G++VAV V Sbjct: 711 -----------VLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERN--GSVVAVTTVV 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889 N+ +++++ G LIR+ V++I R +GV +I + +DE Sbjct: 758 GNEDLMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDE 799 >gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] Length = 831 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/885 (42%), Positives = 546/885 (61%), Gaps = 85/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ N + K A Sbjct: 7 IIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YD + RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R+ Sbjct: 67 RIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK + LL D+ K+TVD + N+D + +EP VL R PN+L+NG GIAVGMATN+P HNL Sbjct: 127 QKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG + I+N DI ++ L++ I+ PDFPTG I G G++ A+ TGRG IVIR ++ Sbjct: 187 TEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIYGYDGVREAFLTGRGRIVIRAKAN 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +G RE I+VTEIPYQVNKA M+ K AE+V +K++ I+ +RDESDR G R+V LK Sbjct: 247 IEEVNG-RECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVYILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LN+LY+YT+LQS FSVN +AL +P+ L ++ FV R +VVVRRT++ Sbjct: 306 RDAVPNIVLNKLYKYTALQSSFSVNNIALVKGRPQMLNLKEMIHHFVEHRHDVVVRRTQF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DRAH+L GL IA N+DEV++IIR S + + AR L+++ Sbjct: 366 ELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQ--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AI+E+RL +LTGL +D +R E N L + I + DIL + Sbjct: 411 -----------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDILDKKE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + IIK EL+ +KD+ RR+ I D ED I E +V+T+SH GY+KR PL Sbjct: 460 RRMEIIKLELVEIKDKYGDERRSNIEYAGGDFSMEDMIPDEQVVITISHAGYIKRTPLIE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG G+ RDEDF+ DLF+ + H +LFF+ G + +V+ +P GS A+G Sbjct: 520 YKTQNRGGVGQKASTTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTAKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++++ Q +++ + + DE NN YV+ ATK G V++ L + + +G Sbjct: 580 RAIQNLINIEQDDKVQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + DE+L + + ++L K G+ +RF S R GR + GVRGI+LA Sbjct: 640 NAINVREDDELLEAKLTNGNSHVMLAVKSGKAIRFEESKTRPM-GRGASGVRGITLADSK 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M V DA+ Sbjct: 699 DEVVGMVAVNDMDAN--------------------------------------------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 IL VSE G+GKR+S D+RI+NR GKG++ +S ++ G LV + V D D Sbjct: 714 -------ILVVSENGYGKRSSLDDYRITNRGGKGVKT--ISITDKTGKLVTIKTVTDTDD 764 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++++ G IR+ V +R+ RAT+GV + + D+ + +V ++ Sbjct: 765 LMIINKSGIAIRMEVAALRVMGRATQGVRLINLKGDDTIAAVAKV 809 >gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G +D +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKEADVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + AD D ++ Sbjct: 694 RLRDGDEVIGLDV---ADDDNQDK------------------------------------ 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++ +E E ++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 907 EST 909 E T Sbjct: 821 EHT 823 >gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 887 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G ++EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] Length = 889 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 554/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont] Length = 876 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/735 (49%), Positives = 506/735 (68%), Gaps = 15/735 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K A Sbjct: 8 IAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL DL K+TVDF PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 128 AKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A I++ +I ++ LME I GPDFPT A I GR GI+ AY TGRG I IR Sbjct: 188 TEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIYIRARGE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 IETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ TL I++AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +SW+ ++ +++ Sbjct: 368 FELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLERA 427 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEAEFGI-RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E + IL S RL+ +I++EL++++D+ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK LS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E +N + AT G V++ L +F Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L DE++ V ++ +L + G+ VRF SA+R GR++ GVR Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRSASGVR 722 Query: 726 GISLAKGDQVISMAI 740 GI LA+GD+V+S+ + Sbjct: 723 GIRLAEGDKVVSLIV 737 >gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus] Length = 886 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/898 (44%), Positives = 563/898 (62%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL R+ I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERNKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELGNDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAEST 909 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E E+ ++ +ST Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNEDEQST 824 >gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 886 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/885 (44%), Positives = 555/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+A+IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT] gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT] Length = 843 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/890 (43%), Positives = 551/890 (61%), Gaps = 86/890 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 EGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G IDNPDI + LM I+GPDFPT +I+G++GIK AY TGRG +VIR Sbjct: 184 HNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVVIRS 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDRQG R+VI Sbjct: 244 KAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A+V+LNQLY++T +Q F + M+AL +P +L +LK ++ F+EEV+ RR Sbjct: 304 ELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S AR LM + +N Sbjct: 364 TQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSK-FN--------- 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AIL+++L RLTGL R+ I E L IK +ILS Sbjct: 414 ----------------LSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILS 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ LL IIK EL +K + RRT IV G D++ ED I +D+V+T++H GY+KR+ Sbjct: 458 NKDLLLKIIKDELNEIKIKYGDERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKRL 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y AQRRGG+G + +++DFV + STH ++LFFS+ G VYK K +++P Sbjct: 518 PVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G LIN+L L + E+I ++ E + Y++ TK+G +++ L + I ++ Sbjct: 578 TAKGMNLINLLPLEKNEKIQNVIYLKEFKPDR---YLIMGTKNGLIKKTSLDQYSSIRKN 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++SV T + +I+ TK G ++F + R GRN+ GV+ I+L Sbjct: 635 GLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDARPM-GRNATGVKAITLRD 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM + S+ER Sbjct: 694 DDEVVSMEVA--------------------------------------------SDERD- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT ++ + R GKG+ +S+ + G L+ V D D Sbjct: 709 --------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDED 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++D G IR+ V++I + SR GV + T ++E+VV++ ++ +E Sbjct: 759 ELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITE 808 >gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398] Length = 889 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 102/239 (42%), Gaps = 34/239 (14%) Query: 683 EILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 E L E E I++T + R P+S R R GV+G++ + D V + + Sbjct: 494 EDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRA-QNRGGRGVQGMNTLEEDFVSQLVTL 552 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEIT------------SLKNDSSVEGNISEER 789 D + + + +L + E++ L+ND + I+ Sbjct: 553 STHD-----HVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIA--- 604 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK---GIRATDVSKINEIGALVAVFP 846 ++L+ ++ F++ +++G KR++ +F NR+GK R D L+AV Sbjct: 605 VKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDD--------ELIAVRL 656 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + I++ + +LIR P + +R R GV + + + VV ++ + + VDE Sbjct: 657 TSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLD-VAHANSVDE 714 >gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] Length = 893 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/886 (44%), Positives = 556/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 15 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 75 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 135 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 195 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 255 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 315 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 375 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 420 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 421 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 468 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G ++EDED I E +V+T+SH Y+KR+P+ Sbjct: 469 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 528 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 529 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 588 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 589 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 646 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 647 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 705 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 706 EVVGLD-VAHANS-VDE------------------------------------------- 720 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 721 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 772 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 773 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 818 >gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] Length = 899 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/918 (42%), Positives = 555/918 (60%), Gaps = 83/918 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M Q+ ++NK Y K A Sbjct: 5 VSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +++GQGNFGS+D DP AA RYTE R+ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTEVRM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K H +L DL KDTVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 TKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A DNP+I + L I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRGRYH 244 Query: 256 IEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE S DRE+IV TEIPYQ NKA ++E+IAELVR+K+I I+++RDESD+ G R+ Sbjct: 245 IEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDGMRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+EVV Sbjct: 305 AIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA+ R H+L GL +A+AN+D+++ I+ S N AR +L+ + W++ + + Sbjct: 365 RRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGTVVAM 424 Query: 431 IDLIDDSS------------YTIGSD----------GTMY-LSEVQTRAILELRLARLTG 467 + + Y G D G Y LS Q AILE++L RLTG Sbjct: 425 LQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHRLTG 484 Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 L +D + E L +I E IL+ +L+ +IK E+L + + RRT IV+ D Sbjct: 485 LEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSRTDF 544 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I + +V+TVS GY K P+S Y AQ+RGGKG+S M+++D + L + STH Sbjct: 545 SREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHA 604 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +VL F+ G V+ + + +PI S ARG+ L+NI+ L E +TTI+P P ++ + Sbjct: 605 TVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEIDSHF 664 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V FAT +G V+R +LS F I +G IA+ L+ D+++S E ++L G+ +R Sbjct: 665 VFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGKAIR 724 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + RV GR + GVRG+ +A + + S+ ++ Sbjct: 725 FDENDARVM-GRTAKGVRGMRIANDEFIKSLVVI-------------------------- 757 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 EE QE IL E G+GKRT +F NR G G+ Sbjct: 758 -------------------EEDVQE-------ILIACENGYGKRTPVDEFNAQNRGGGGV 791 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A S+ N GALV V D IIL+S+KGTL+R PV ++ + R T+GV + +K Sbjct: 792 IAIKTSERN--GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIRLSK 849 Query: 888 DERVVSVERIRESEIVDE 905 DE +V++ R+ ++ DE Sbjct: 850 DEALVAMARVEDTGEEDE 867 >gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 878 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] Length = 848 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/885 (42%), Positives = 552/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM+ +GV K Y K A Sbjct: 17 IIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++YDA+ R+AQDWS+R L++GQGN+GS+DGDPPAA RYTE RL Sbjct: 77 RIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A +L D+ KDTVDF+ N+D S +EP VL R PN+LVNG GIAVGMATN+ HNL Sbjct: 137 KKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG VA IDN +I++ LM+ I+GPDFPTG +I G G+K A TGRG +V+R + Sbjct: 197 SEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKEACETGRGRVVMRAKAE 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE T RE I+VTEIPYQVNKA M+++ AELV EK+I I+++RDESDR+G+RVV ++K Sbjct: 257 IETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+YT+LQ+ FSVN +AL +P L ++ FV R EVV+RRTK+ Sbjct: 317 RDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A RAH+L G IA+ +LDEV+++IR S PE AR LM+R Sbjct: 377 ELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMER--------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q RAIL++ L RLTGL RD I+ E N L I+ ++LS Sbjct: 422 -----------FALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEG 470 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK ELL +KD+ RR+ IV DM ED I E++V+T+SH YVKR PLS Sbjct: 471 LRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSE 530 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG+G G R+EDF + S H +LFF+ G + + + +P GS +RG Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590 Query: 616 KALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +AL NI+++ + E+I + +D+ N +++ TK G +++ L + + +G Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ ++ D+++ ++I++ + G+ +RF S +R GR + GVRGI+LA + Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM-GRTATGVRGITLAHEK 709 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M IS + E+T Sbjct: 710 DEVVGM--------------------------ISVNNPEVT------------------- 724 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSEKG+GKRT D+R++NR GKG++ +V+ ++ G LVA+ V D++ Sbjct: 725 -------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGELVAIKDVTDSED 775 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++++ G +IR+ V ++R+ RAT+GV + + ++ + S+ ++ Sbjct: 776 LMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITKV 820 >gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99] Length = 878 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/903 (43%), Positives = 568/903 (62%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G +D +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ D+DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N++ L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V E IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVCLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + D + DE Sbjct: 694 RLRDGDEVIGLDVA--DDDNQDE------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+++G +IR+ V+ I + R +GV + +++ V +V ++ +E E ++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820 Query: 907 EST 909 E T Sbjct: 821 EHT 823 >gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522] Length = 843 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/889 (42%), Positives = 556/889 (62%), Gaps = 88/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + L+ D+ KDT+D++ NYDGS EP+VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ +NP I LME I GPDFPTGA I+G +GI+ AY TG+GSI Sbjct: 183 IPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE +G + +I+VTEIPYQVNKA ++EKIAELVR+K++ I DLRDESDR G R Sbjct: 243 IRAKAEIEDNNG-KPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +A+V+LN LY+ T+LQS F +NM+AL +P+ ++ +L ++ + V+ Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ +IR S E AR+ LM+ Sbjct: 362 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLME---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L +IKE Sbjct: 412 ----------------NFSLSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++EL ++D + RRT I G MEDED I R+++V+T+SH GY+K Sbjct: 456 ILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQNVVITLSHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PLS YR+Q+RGG+G G+ D+DFV LFI ++H +LFF++ G VY+ K + +P Sbjct: 516 RIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSF 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + A+G +IN+L + + E ++T++P E DE Y+ F TK G +R L F I Sbjct: 576 NRTAKGIPIINLLQIEKDEYVSTVIPVDEFDEER----YLFFMTKDGIAKRTALKVFSNI 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 R G A+ L D + V +I+ T+ G +RF + +R+ GR + GV+G++ Sbjct: 632 RRGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLM-GRTATGVKGVT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + DQV+ M DT E Sbjct: 691 LQENDQVVGM-----------------------------DTIE----------------- 704 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++Q +L V+EKGFGKRT ++RI R GKGI+ +++ N G L+++ V+ Sbjct: 705 -------EDQAVLIVTEKGFGKRTPVSEYRIQTRGGKGIKTCNITDKN--GPLISLKVVS 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D+ ++++++ G +IR+ V EI R T+GV + +E V +V R+ Sbjct: 756 DDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVARV 804 >gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 848 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/885 (42%), Positives = 552/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM+ +GV K Y K A Sbjct: 17 IIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++YDA+ R+AQDWS+R L++GQGN+GS+DGDPPAA RYTE RL Sbjct: 77 RIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A +L D+ KDTVDF+ N+D S +EP VL R PN+LVNG GIAVGMATN+ HNL Sbjct: 137 KKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG +A IDN +I++ LM+ I+GPDFPTG +I G G+K A TGRG +V+R + Sbjct: 197 SEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKEACETGRGRVVMRAKAE 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE T RE I+VTEIPYQVNKA M+++ AELV EK+I I+++RDESDR+G+RVV ++K Sbjct: 257 IETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIK 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+YT+LQ+ FSVN +AL +P L ++ FV R EVV+RRTK+ Sbjct: 317 RDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIHEFVEHRHEVVIRRTKF 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A RAH+L G IA+ +LDEV+++IR S PE AR LM+R Sbjct: 377 ELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMER--------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q RAIL++ L RLTGL RD I+ E N L I+ ++LS Sbjct: 422 -----------FALSDLQARAILDMTLRRLTGLERDKIKEEYNELMKTIEYLKEVLSDEG 470 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK ELL +KD+ RR+ IV DM ED I E++V+T+SH YVKR PLS Sbjct: 471 LRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIVITISHNSYVKRTPLSE 530 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG+G G R+EDF + S H +LFF+ G + + + +P GS +RG Sbjct: 531 YKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTSRG 590 Query: 616 KALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +AL NI+++ + E+I + +D+ N +++ TK G +++ L + + +G Sbjct: 591 RALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTIKKTSLEAYSRPRANGI 650 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ ++ D+++ ++I++ + G+ +RF S +R GR + GVRGI+LA + Sbjct: 651 NAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM-GRTATGVRGITLAHEK 709 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M IS + E+T Sbjct: 710 DEVVGM--------------------------ISVNNPEVT------------------- 724 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSEKG+GKRT D+R++NR GKG++ +V+ ++ G LVA+ V D++ Sbjct: 725 -------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGELVAIKDVTDSED 775 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++++ G +IR+ V ++R+ RAT+GV + + ++ + S+ ++ Sbjct: 776 LMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITKV 820 >gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] gi|294837788|ref|ZP_06782471.1| DNA gyrase, A subunit [Acinetobacter sp. 6013113] gi|294858569|ref|ZP_06796338.1| DNA gyrase, A subunit [Acinetobacter sp. 6013150] gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058] gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] Length = 904 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/896 (43%), Positives = 553/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DAD + S L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSTDSSLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU] gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|294840722|ref|ZP_06785405.1| DNA gyrase, A subunit [Acinetobacter sp. 6014059] gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056] gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059] gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii ACICU] gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2] gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii TCDC-AB0715] Length = 904 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/896 (43%), Positives = 554/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DAD + SA L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] Length = 903 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/914 (43%), Positives = 568/914 (62%), Gaps = 52/914 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +G NK Sbjct: 3 ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKA 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD AA RY Sbjct: 63 YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + AH L+ D+ K+TVDF+PNYD EP V+ R+P++LVNG GIAVGMATNI Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+ID P++D++ LME I GPDFPT +I G GI Y TGRG + + Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + +E RE I+VTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG SA+V+LN LY+ T ++S+F +NMVAL +P+ L +L+AF+ R EVV Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLQAFIRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-------- 422 RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR ++ ++W Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422 Query: 423 ------NASDIKDL---IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 AS +DL + LI G L+EVQ ILE+RL RLTGL ++ + Sbjct: 423 LGAAGAEASKPEDLPPGVGLI---------KGFYQLTEVQASQILEMRLHRLTGLEQEKL 473 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 +E L I+ + IL + LL +I+ EL+++++E RRT I D++ D I Sbjct: 474 TDEYKQLLEVIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLI 533 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+ Sbjct: 534 SPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFT 593 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 S G V+ V++LP ARG+ +IN + L GER+ ++P E +N YV FAT+ Sbjct: 594 SSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRE---YADNRYVFFATR 650 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G V++ LS+F GKIA+ LD D ++ V + D+LL G+ VRF S + Sbjct: 651 NGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTV 710 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GVRGI L KG++V+S+ IV A + + D I Sbjct: 711 RSM-GRTATGVRGIRLTKGEEVVSL-IVAERAAGVESDVEEESVEDVVETTDVADAAVIE 768 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +ND + +ILT +E G+GKRT ++ R +G+ + Sbjct: 769 VAENDDTA-----------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTT 811 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV + D+++L+SD GTL+R +EI R T+GV + +K E++ + Sbjct: 812 ERN--GKLVRAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQA 869 Query: 894 VERIRESEIVDEAE 907 VER+ S +DE E Sbjct: 870 VERLDAS--LDEVE 881 >gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] Length = 850 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/893 (42%), Positives = 556/893 (62%), Gaps = 85/893 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV + Sbjct: 3 EGEKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A I+NP+I++D L+ I+ PDFPTG VI G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIFGYEGVKEAFHTGRGRVVVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ G +E I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V Sbjct: 243 AKAIIEEVQG-KECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+YTSLQS FSVN +AL +P++ + ++ FV R EVVVR Sbjct: 302 YILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNGRPQQLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA DRAH+L GL IA N+DEV+++IR S +P+ AR LM+R Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E N + I + DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDIIATIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK+EL VK + RR+ I + ED I E +V+T+SH GY+KR Sbjct: 456 GDKERRMSIIKEELQEVKTKYGDARRSEINYAGGSLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 ALSEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+++++Q +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + + L K G+ +RF S R GR + GVRG+SL Sbjct: 636 TNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPM-GRGASGVRGVSL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M I +H + D+ Sbjct: 695 ANDQDEVIGM-ITVHNEEDH---------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+R++NR GKG++ +++ + G LVA+ V Sbjct: 714 -----------ILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITE--KTGGLVAIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+D +++++ G IR+ V ++R+ RAT+GV + + +++ + +V ++ + E Sbjct: 761 DSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKEE 813 >gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 878 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 878 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2] gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2] Length = 920 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/942 (42%), Positives = 566/942 (60%), Gaps = 109/942 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF NYDG+ + P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDGC+A+ID+ + D LME I+GPDFPT +I GR GI AY TGRG + +R + Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARAE 247 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE T +E I+VTEIPYQVNKA ++EKIAELV++K+I I +LRDESD++G R+VIEL Sbjct: 248 IEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG +A+V+LN LY+ T ++S+F +N VAL +P+ L +L AF+ R EVV RRT Sbjct: 308 RRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRTV 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR++AH+L GLA+A++N+D V+ +I+ SP+ A+ +L+ + W D+ +++ Sbjct: 368 YELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLERA 427 Query: 435 D----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D Y + DG +LS Q +AIL+LRL +LTGL R+ + N+ L +I Sbjct: 428 GGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL + RL+ +I++EL +V++E RR+ IV D ED I E +VVT+S+ Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K P+ YRAQ+RGG+G+S ++D+D+V L + TH ++L F++ G V+ + + Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTNAGKVFWLRTF 606 Query: 605 RLPIGSPQARGKALINIL-SLNQGERITTIMPF-------------------------PE 638 LP G +RGK ++N+L +L ERIT I+ E Sbjct: 607 ELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADVIE 666 Query: 639 DESSWNNL---------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 DE+ + ++ AT G V+R L++F + SG IA+KL + Sbjct: 667 DETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEH 726 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V DI+L + G+ VRF S +RV + R + GVRGI LA+G VIS+ Sbjct: 727 LVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDVISLI---- 781 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 + EE Q ILT Sbjct: 782 -----------------------------------------VPEENGQ--------ILTA 792 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE G+GKRT D+ R G+G+ A +++ N G LV V + I+L+S++GTL+ Sbjct: 793 SEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLV 850 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 R VN++ + R T+GV + A E + + I E E V+E Sbjct: 851 RTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIPELEGVEE 892 >gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132] gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] Length = 887 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/886 (44%), Positives = 555/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G ++EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 816 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ E Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDE 811 >gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00] Length = 886 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/885 (44%), Positives = 555/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 878 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803] gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803] Length = 823 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VKD + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKDRFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1] gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1] Length = 802 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/888 (43%), Positives = 555/888 (62%), Gaps = 88/888 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +EKGI V+I D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MGV NK Y Sbjct: 2 KEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG++A+YD L RMAQD+S+R L++GQGNFGS+DGD AA RYT Sbjct: 62 KKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVDF PNYDGS +EPVVL R PN+L+NG GIAVGMATNIP Sbjct: 122 EVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D V +IDNP + ++ I+GPDFPT +I G+ I AY TG+G I +R Sbjct: 182 PHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E T+ +E +VVTE+PYQVNKA ++EKIA L R+K+I I DLRDESDR G R+V Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG +AD+I+NQLY++T ++ + +N+V + KP+ TL +L+ F+ R+ VV+R Sbjct: 302 IELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+LL KA DR H+L GL AV N+DEVV +I+ S N A+ +LM R Sbjct: 362 RTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q +AIL++RL RLTGL + +RNE I+ IL Sbjct: 411 ---------------FELSDKQAQAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +++S L+GIIK+EL+ +K++ RRT+IV ++ ED I +++VVT+S+ G++KR Sbjct: 456 NNKSVLMGIIKEELIDIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +++Q+RGGKG++G EDF+ D+ + + H++++FF++ G ++ KV+ LP + Sbjct: 516 PLSNFKSQKRGGKGKTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELAR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GK + N++SL++ E++ ++ E + + Y+ TK G V++ L F RS Sbjct: 576 DAKGKYIANLISLDKDEKVAAMISTKEFD---RDRYIFMCTKEGIVKKTSLDAF-SSGRS 631 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+KL DEI+ ++ + I ++T+ G+C++F S +R GRN+ GV+GI+L K Sbjct: 632 GIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNM-GRNATGVKGITLTK 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM V GD Sbjct: 691 DDKVVSMEAV------------------------KGDP---------------------- 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILTV+ KGFGK + D+RI +R GKGI+ + V++ G +V V D Sbjct: 705 -------LILTVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTE--RTGEIVGARQVKLED 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++L+S +IR+ V++I I R T+GV + D+ ++S + IRE Sbjct: 756 DVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGL--DDEIISFDVIRE 801 >gi|21228522|ref|NP_634444.1| DNA gyrase, subunit A [Methanosarcina mazei Go1] gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1] Length = 900 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/888 (43%), Positives = 560/888 (63%), Gaps = 92/888 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+T + I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+ +K Y K Sbjct: 17 GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++A+YD + RM QD+SLR LI+GQGNFGS+DGD AA RYTE R Sbjct: 77 ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A +L D+ K+TV F PNYDGS +EP VL AR PN+L+NG GIAVGMATN+P HN Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 + EV+DG + +I+NP+ + LM +I+GPDFPTGA ILG GI++AY TGRG I +R V+ Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 I++ DR+QI+VTE+PYQVNKA ++E IA+LVREK I I+DLRDESDR+G RVV+EL Sbjct: 257 EIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVEL 316 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 RG + +V+LNQLY++T + + F V +AL KP+ L +L+ ++ +R E++ +RT Sbjct: 317 SRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTL 376 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + A++ LI Sbjct: 377 YDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQ----------------GLI 420 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D+ + L EVQ +AILE+RL RLTGL I +EL +L +I+E IL+S Sbjct: 421 DNFA----------LDEVQAKAILEMRLQRLTGLETRKILDELEALVKQIEELRKILASD 470 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 II+ EL +KD+ RRTRIV ++ DED I ED+VVT+++ GY+KR+PL Sbjct: 471 ELKYEIIRTELSELKDKYGDIRRTRIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLD 530 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y QRRGG+G G+ M++EDFV +LFI STH +LFF++ G +Y +KV+ +P GS Q+R Sbjct: 531 TYTMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSR 590 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 GKA++N+L L +GE + ++ F ED+ Y+ AT+ G V++ LS+F R+ Sbjct: 591 GKAIVNLLELQEGEMVNAMISVEEFAEDK------YLFMATRAGTVKKTPLSEFRNPRRA 644 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-A 730 G IA+ LD DE++ V + +I++ +K G+ +RF +R GR + GVRG++L Sbjct: 645 GIIAVSLDEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPM-GRTARGVRGMTLEG 703 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+S+ +V +E T+L Sbjct: 704 PDDEVVSLDLV----------------------------DETTTL--------------- 720 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 LTV++ GFGKRT + + R GKG+ T V+ + G + V V ++ Sbjct: 721 ----------LTVTDNGFGKRTEYSQYPVHRRGGKGV-ITIVTNLRN-GFVSNVKSVAED 768 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D+++ S +G +IR+P +I I R T+GV + + ++V + RI+ Sbjct: 769 DELMFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIK 816 >gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE] gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] Length = 904 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/896 (43%), Positives = 553/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DAD + S L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSTDSSLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4] gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4] Length = 960 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/922 (42%), Positives = 567/922 (61%), Gaps = 54/922 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ NKKY KCA Sbjct: 30 MISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCA 89 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 ++ G MG YHPHG++AIYDA+ R+AQ +S+R L++GQGNFGSVDGDPPAA RYTE RL Sbjct: 90 KVVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARL 149 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ DTVDF PNYD S EP VL ARYPN++VNG GIAVGMATNIP HNL Sbjct: 150 MKIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNL 209 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+ +++NP L ++E ++GPDFPT I G++GI NAY TGRG ++R Sbjct: 210 TEVINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIYGKSGIANAYRTGRGKFLMRAKCS 269 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E SG RE I+V+EIPYQVNK ++++IAELV EK I DI+D+RDESDR G R+VIELK Sbjct: 270 RENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELK 329 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LNQL+++TS+Q FS+ +A++ +P L ++AF+ R +VV RRT + Sbjct: 330 RTAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVELPLPDAIRAFIDHRVDVVRRRTAF 389 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR------SWNASDIKD 429 LLNKARDR H+L+G IA+ +LD V+R IR S + AR L + S +++ Sbjct: 390 LLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAG 449 Query: 430 LIDLIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + +D S Y I +D GT+ LS Q ILEL+L RLT L D++ EL Sbjct: 450 VT--LDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQ 507 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 + I E IL+S +L +I +EL V+++ RRT+I++ ++ ED I E + Sbjct: 508 VRENIAEYESILASDKKLRRVIIKELEEVREKYGDVRRTQIIDESSELTLEDLIADEQVA 567 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VTVSH GY+KR P+S YR QRRGG GR G+ R+EDFV L + STH +L F++ G V+ Sbjct: 568 VTVSHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLLCFTNSGRVF 627 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 K++ +P +GK + ++L+L GE++ +P E + Y+ FAT+ G V++ Sbjct: 628 WLKIYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLEDASK--YIFFATREGIVKK 685 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------ISA 712 L DF + G IA+ +D DE+++V + E+ + L T+ G VRF Sbjct: 686 TPLPDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGG 745 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV---LHADADYDERICYMK------------- 756 +R GRN+ G +GI+L KGD VI A+ D DE K Sbjct: 746 LRPM-GRNAGGNKGITLKKGDYVIGAAVTDSREKRDGQRDELAVATKLEKELAAVRAEIA 804 Query: 757 --HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ---ELKLKEQFILTVSEKGFGKR 811 Q+ S + EE + + V + E+ C+ +L L IL+V+E G+GKR Sbjct: 805 AAEAELQKARDSKNEEEAKAARKALDV---VEEKLCKLDGKLGLSPCLILSVTENGYGKR 861 Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871 T ++R++NR G G+ S + G + ++ V++ +++ +S G +IR+ N IR Sbjct: 862 TDVEEYRLTNRGGSGVINMKASA--KTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIR 919 Query: 872 IASRATKGVVIFSTAKDERVVS 893 A R+T+GV + + D++V + Sbjct: 920 AAGRSTQGVKLLNLDTDDKVAA 941 >gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521] gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521] Length = 835 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/885 (42%), Positives = 549/885 (62%), Gaps = 86/885 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K Y Sbjct: 6 EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYTE Sbjct: 66 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++DG + +IDNP++ + LM I+GPDFPTGA I+G+ GI+ AY TGRG IV+R Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +IVVTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+V+ Sbjct: 246 DAEIEEENG-RHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIVV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V+LN LY++T LQ F V M+AL +P + IL ++ +++EV+ RR Sbjct: 305 ELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM++ Sbjct: 365 TVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LS+ Q AILE+RL RLTGL R+ I E L +I+ IL+ Sbjct: 413 --------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +LLG+IK EL +K + RRT+I + + +++ ED I ED+V+T+++ GY+KR+ Sbjct: 459 SEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRIS 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y AQRRGGKG + +++DFV + I STH+ VLFF++ G VYK + + +P Q Sbjct: 519 ADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQ 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G +IN++++ E+I T++ + + ++ ATK+G V++ +S+F + ++G Sbjct: 579 AKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNLRKNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L V+ + +I++ T+ G VRF +R GR + GV+ I+L Sbjct: 636 LIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKDD 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + D EE Sbjct: 695 DVAVCMDIAV-------------------------DGEE--------------------- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L +SE GFGKRT ++++ NR G G+ +S+ + G L +D+ Sbjct: 709 -------LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDDE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++L++ G IR+ V +I + +R+ GV + T +DE+VV++ +I Sbjct: 760 LMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804 >gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 887 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/885 (44%), Positives = 554/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 10 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 70 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 130 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 190 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 250 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 310 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 370 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 416 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 464 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 523 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 524 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 583 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 584 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 642 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 701 EVVGLD-VAHANS-VDE------------------------------------------- 715 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 716 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 767 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 768 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812 >gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] Length = 824 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 242 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 243 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 415 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 416 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 456 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 457 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 516 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 517 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 576 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 577 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 630 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 631 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 689 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 690 VKAITLGEEDQVVGMEI----------------------------------------VEE 709 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 710 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 754 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 755 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 812 >gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum] Length = 887 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/886 (44%), Positives = 554/886 (62%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D++DED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEVISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V++ G +IR+ V +I RA +GV + D+ V +V +++E Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE 812 >gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 835 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/885 (42%), Positives = 549/885 (62%), Gaps = 86/885 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K Y Sbjct: 6 EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD AA RYTE Sbjct: 66 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG QEPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE++DG + +IDNP++ + LM I+GPDFPTGA I+G+ GI+ AY TGRG IV+R Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +IVVTEIPYQVNKA ++E IA+LV++K+I I+DLRDESDR G R+V+ Sbjct: 246 DAEIEEENG-RHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIVV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V+LN LY++T LQ F V M+AL +P + IL ++ +++EV+ RR Sbjct: 305 ELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + LNKA RAH+L GL IA+ N+DEV+ IIR S E A+ LM++ Sbjct: 365 TVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK------------ 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LS+ Q AILE+RL RLTGL R+ I E L +I+ IL+ Sbjct: 413 --------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +LLG+IK EL +K + RRT+I + + +++ ED I ED+V+T+++ GY+KR+ Sbjct: 459 SEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRIS 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y AQRRGGKG + +++DFV + I STH+ VLFF++ G VYK + + +P Q Sbjct: 519 ADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQ 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G +IN++++ E+I T++ + + ++ ATK+G V++ +S+F + ++G Sbjct: 579 AKGTNVINLIAIEPDEKIQTVLTVSDGKKEG---FLFMATKNGIVKKTHISEFKNLRKNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L V+ + +I++ T+ G VRF +R GR + GV+ I+L Sbjct: 636 LIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKDD 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + D EE Sbjct: 695 DVAVCMDIAV-------------------------DGEE--------------------- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L +SE GFGKRT ++++ NR G G+ +S+ + G L +D+ Sbjct: 709 -------LLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDDE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++L++ G IR+ V +I + +R+ GV + T +DE+VV++ +I Sbjct: 760 LMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804 >gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] Length = 904 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/896 (43%), Positives = 555/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DA+ + SA L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDAEVENDESDDNDDSADSSLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187] gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1] gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187] gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus Q1] gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 823 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 560/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V ++ I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] Length = 822 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 556/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL+ VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELIEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20] gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 886 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/885 (44%), Positives = 554/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames] gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987] gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne] gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bacillus anthracis str. A2012] gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066] gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055] gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America USA6153] gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum] gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94] gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI] gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames] gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987] gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne] gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI] Length = 823 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 823 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811 >gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] Length = 878 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGEDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] Length = 822 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] Length = 823 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B] gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] Length = 823 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] Length = 818 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/884 (42%), Positives = 559/884 (63%), Gaps = 91/884 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +G+ +K + K AR GE Sbjct: 16 IYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGITPDKPHKKSARTVGE 75 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VM KYHPHG+++IYDA+ RMAQD+S+R +L++G GNFGS++GD AA RYTE R+ A Sbjct: 76 VMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAAAMRYTEARMSHLAL 135 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ K TVDF PN+D +EP VL +R+P +LVNG GIAVGMAT+IP HNLGEV+D Sbjct: 136 QMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGMATSIPPHNLGEVID 195 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 V +ID+ + ++ L +II+GPDFPTGA ILGR GI+ Y TG+G I IR IE+T Sbjct: 196 ATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQGKIKIRSTIDIEQTK 255 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 +EQ+VV+EIPYQVNK ++EKI ELV+EK I I+++RDE++++G R+VIELKR A+A Sbjct: 256 KGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNKEGIRIVIELKRDANA 315 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 ++LN+LY++TSLQ S+ M+AL +P++ TL+ IL ++ ++E+V RRT++ L KA Sbjct: 316 SIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQKEIVTRRTQFDLEKA 375 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +RAH+L GL IA+ N+DE+++IIR S + A+++LM Sbjct: 376 ENRAHILEGLRIALDNIDEIIKIIRSSYDD--AKQKLMD--------------------- 412 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 T LSEVQT+AIL+++LARL GL R+ I NE + L +I +ILS+ L+ + Sbjct: 413 -----TFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNV 467 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+ELL +K++ RRT+IV+ ++E+ED I R+++ +T++H GY KR+ + Y+ Q+ Sbjct: 468 IKEELLEIKEKYADERRTQIVDDDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQK 527 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG +G+ R+ DFV ++ STH +LFF++ G +K K +++P + A+G +IN Sbjct: 528 RGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIIN 587 Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++L++ E IT ++P F ED+ Y++ T G +++ KLS+F +SG IA+K Sbjct: 588 FVNLDKTEEITAVIPIDEFREDK------YLIAVTSQGLIKKVKLSEFESNRKSGLIAVK 641 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L D+++++E ++D+L+ T+ G +RF + +R GR S+GV+ I+L D++IS Sbjct: 642 LHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRA-TGRQSIGVKAITLKGDDEIIS 700 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M +V + +EL Sbjct: 701 MQLV----------------------------------------------SKGKEL---- 710 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 L VS+KG+GKRT + + + R GKG + D K + G L V++ D I+L++ Sbjct: 711 ---LVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVTGELTGALIVDEEDDIMLIN 767 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G +IR+ EI SRATKGV I +D ++S+ ++ E Sbjct: 768 SDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVMNEE 811 >gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4] Length = 843 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/901 (41%), Positives = 557/901 (61%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV + + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D + +EP VL R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A IDN +I++D LM+ I+ PDFPTG I G G+K A+ TGRG IV+R Sbjct: 183 PHNLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G ++IE+ G RE I+VTEIPYQVNKA M++K A+L+ +K++ I+ +RDESDR G R+V Sbjct: 243 GNANIEEVQG-RECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+LY+YT+LQS FSVN +AL KP+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGKPQLLNLKELIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA +RAH+L GL IA N+DEV+ +IR S N + AR +L++R Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E L I++ DIL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK+EL V+D+ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 DKKDRRMSIIKEELQLVRDKYGDERRSKIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE NN YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + D +L + T E+ ++L K G+ +RF + R GR + GVRGI L Sbjct: 636 TNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPM-GRGASGVRGIRL 694 Query: 730 A--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 K D+VI M V D++ Sbjct: 695 QDEKTDEVIGMIAVNDMDSN---------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL VSE G+GKR+S D+RI+NR GKG++ +++ + G LV++ V Sbjct: 715 ------------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVSIKNV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDE 905 D D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ E E+VDE Sbjct: 761 TDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVMHEEEEVVDE 820 Query: 906 A 906 Sbjct: 821 T 821 >gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 878 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 823 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 878 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 878 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] Length = 823 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 558/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L DQV+ M I VE Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 878 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551] gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551] Length = 836 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/891 (43%), Positives = 554/891 (62%), Gaps = 86/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 9 IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP H L Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TG+GSI++R Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSIIVRAKVE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S ++ I+V E+PYQVNKA ++EKIAEL R+K+I I DLRDESDR G R+VIE++ Sbjct: 249 IEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+ TSLQ+ F +N +AL +P+ L L+ ++ + V+ RRT++ Sbjct: 309 RDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLD V+ +IR S + AR LM + Sbjct: 369 ELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLTGL R+ I E SL I E IL+ Sbjct: 414 -----------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II++EL+ VK+ + RRT IV G + +EDED I R+D+V++++H GY+KR+P+S Sbjct: 463 KVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y++QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P A+ Sbjct: 523 TYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +++GE + I+ E W Y+ F TK G +R LS F I SG I Sbjct: 583 GIPIINLLEVDKGEWVNAIIRVDEFVDDW---YLFFTTKQGISKRTPLSSFENIRNSGLI 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV+ + D+++ TK G +RF + +R GR + GV+GI+L D+ Sbjct: 640 ALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGITLDSEDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M I+ EE+ Sbjct: 699 VIGMEIL---------------------------------------------EEQSD--- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L +++ G+GKRT ++R+ R GKG+R +++ N G +VA+ V+ + I+ Sbjct: 711 -----VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKN--GDVVALKCVSQEEDIM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 L++ G LIRV V++I R T+GV + +E V +V +++ SE DE Sbjct: 764 LITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDE 814 >gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] Length = 823 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M IV EE T+ Sbjct: 692 ITLGEEDQVVGMEIV----------------------------EEDTN------------ 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 878 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/831 (45%), Positives = 540/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 823 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii SDF] gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii] Length = 904 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/893 (43%), Positives = 552/893 (61%), Gaps = 45/893 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPT +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G SD LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL V + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P S A+G+ ++N+L L+ E +T I+P E N YV AT G V+R + Sbjct: 606 KVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTE---FLENHYVFMATASGTVKRVE 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR + Sbjct: 663 LEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ ++ +S DAD + SA L+S I SL Sbjct: 722 KGVRGMRVSFASSTLS-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV----- 767 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + E + +L S G+GKRT DF R GKG+ A S+ N G L Sbjct: 768 ---VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 814 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 815 VGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans] Length = 935 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/950 (42%), Positives = 568/950 (59%), Gaps = 79/950 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + H L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP ID+D LME I GPDFPT ++ G GI Y TGRG + + Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG +ADV+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQLLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + DD +G G L+EVQ ILE+RL RLTGL ++ + E L Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I++EL+S+++E RRT I D++ D I ED+VVT+ Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP P ARG+ +IN + L QGER+ ++P E + YV FAT+ G V++ L Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVRE---YADGHYVFFATRKGMVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PISAIRVF--- 716 S+F + GK+A+ LD D ++ V E D+LL G+ VRF P Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAV 719 Query: 717 ------------------------------------AGRNSVGVRGISLAKGDQVISMAI 740 GR+S GVRGI LAK + V+S+ + Sbjct: 720 DEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 A+ E + + D + T+ D+ +I Sbjct: 780 -----AEPAEGQDEDADDADLAQEAEADAQTRTADDADA-------------------YI 815 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT +E G+GKRT ++ R +G+ S+ N G LV ++ D+++L+SD G Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R +EI R T+GV + +K E++ +VER+ S + +E S E Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923 >gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] Length = 900 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/908 (43%), Positives = 569/908 (62%), Gaps = 72/908 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WNK Y K Sbjct: 6 KEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVDF PNYDGS Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D C A +D+ +I ++ LM+ I+GPDFPT +I GR GI AY TGRG I IR Sbjct: 186 NLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGIINGRAGIIEAYRTGRGRIRIRAR 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E+ + R+ I+VTEIPYQ+NKA ++E+IAELV+EK I I +LRDESD+ R+VI Sbjct: 246 ATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKN-IRIVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E++RG +ADV+LN LY T ++S+F +NMVAL +P L G+++AFV R+EVV RR Sbjct: 305 EVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQPRLLNLRGVIEAFVRHRQEVVTRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+RAH+L GLA+A+AN+D V+ +I+ S + A L+ + W ++ +++ Sbjct: 365 TVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIAMLE 424 Query: 433 LIDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ ++ +G YLS+VQ R ILE+RL RLTGL + + E Sbjct: 425 RAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEKLEI 484 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I+E L IL+SR RL+ +I+ EL ++++ R+T IV LD+ DED I E +VVT+S Sbjct: 485 IRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEETVVVTLS 544 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 + GY K PL Y+AQ RGG+G++ +++ED + L +VSTH ++L F+S G V+ KV Sbjct: 545 NDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKVFWLKV 604 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P QA+G+ ++N+LSL + E+IT I+P + +V AT +G V++ L Sbjct: 605 YQIPQAGRQAKGRPIVNLLSLGENEKITAILPL---RGYDGDRFVFMATSNGTVKKVALQ 661 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F + G IA++L+ + ++ V DI+L + G+ VRF + +R GR + G Sbjct: 662 EFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAM-GRTARG 720 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG++L + VI++ IV DA Sbjct: 721 VRGMNLPEDAAVIAL-IVPDPDAQ------------------------------------ 743 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ILT E GFGKRT +F R GKG+ A S+ N G L+ Sbjct: 744 ----------------ILTACENGFGKRTLVSEFPTKGRGGKGMIAIRTSERN--GKLMG 785 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SE 901 VND ++++L+SD+GT++R+ +E+ + R T+GV + + ER+V +E++ E Sbjct: 786 AVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEVSDA 845 Query: 902 IVDEAEST 909 V+EA+++ Sbjct: 846 AVEEAKAS 853 >gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73] gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans] Length = 935 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/950 (42%), Positives = 568/950 (59%), Gaps = 79/950 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G NK Sbjct: 3 ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD AA RY Sbjct: 63 YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + H L+ D+ K+TVDF+PNYD QEP V+ R+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E ++ C+A+IDNP ID+D LME I GPDFPT ++ G GI Y TGRG + + Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE RE IVVTEIPYQVNKA ++EKIAELV+EK++ I++LRDESD+ G R+ Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE+KRG +ADV+LN LY+ T ++S+F +NMVAL +P+ L +L+AFV R EVV Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQMLEAFVRHRREVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP AR ++ ++W + L Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + DD +G G L+EVQ ILE+RL RLTGL ++ + E L Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + IL + LL +I++EL+S+++E RRT I D++ D I ED+VVT+ Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY KR P+S YRAQRRGG+GRS ++EDF+ L++V+TH ++L F+S G V+ Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V++LP P ARG+ +IN + L QGER+ ++P E + YV FAT+ G V++ L Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVRE---YADGHYVFFATRKGMVKKTPL 659 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF---PISAIRVF--- 716 S+F + GK+A+ LD D ++ V E D+LL G+ VRF P Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAV 719 Query: 717 ------------------------------------AGRNSVGVRGISLAKGDQVISMAI 740 GR+S GVRGI LAK + V+S+ + Sbjct: 720 DEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 A+ E + + D + T+ D+ +I Sbjct: 780 -----AEPAEGQDEDADDADLAQEAEADAQTRTADDADA-------------------YI 815 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT +E G+GKRT ++ R +G+ S+ N G LV ++ D+++L+SD G Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 TL+R +EI R T+GV + +K E++ +VER+ S + +E S E Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923 >gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121] gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121] Length = 893 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/897 (43%), Positives = 556/897 (61%), Gaps = 63/897 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + +WNK Y K Sbjct: 6 KEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G V+GKYHPHG+ A+YDA+ R+AQ +S+R L++GQGNFGSVDGD PAA RYTE Sbjct: 66 SARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R++K AH L DL K+TVDF PNYDG+ P V+ R P +LVNG GIAVGMATNIP H Sbjct: 126 RMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+DG +A+IDN I +D LME I GPDFPT A I GR GI +AY TGRG I +R Sbjct: 186 NLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFINGRAGIVDAYKTGRGKIYMRAR 245 Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 HIE G+RE IV TEIPYQ+NKA ++EKIAELV++K++ I++LRDESD+ G R+VI Sbjct: 246 HHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +ADV++N L+ T LQ +F +NMVAL +PE L +L+ FV R EVV RR Sbjct: 306 ELRRGENADVVVNNLFIQTQLQGVFGINMVALVDGRPELLNLKQVLECFVKHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN++E++ +IR SP A+ +L+ ++W D+ +++ Sbjct: 366 TIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSAMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD G DG+ YLS VQ +AIL+LRL RLTGL + ++NE +L I Sbjct: 426 RAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALIELI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL+S +RL+ +I++EL +K + RRT I+ D+ D I MVVT+S+ Sbjct: 486 AELLHILASPARLMEVIREELEEIKAQFGDVRRTEILTSRQDLTVADLIDEAPMVVTISN 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL Y+AQRRGG+G+S M+DED ++ L + S+H +++ FS+ G VY +V+ Sbjct: 546 TGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFGKVYWLRVF 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P+ S A+G+ ++N+L L++GE I+ ++P E S Sbjct: 606 EIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKS---------------------- 643 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 D+ D V + E+ I + T G + +A++ FA S G+ Sbjct: 644 --------------DAEDAETEV-SEDAESFIFMATANGTVKK---TAMQHFARPRSTGL 685 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG- 783 +SL + D+++ ++I + ++ I + R D + + + V G Sbjct: 686 IALSLDESDELVGVSIT-----NGNDDIMLVSSTGKTIRFKESDVRAMG--RTAAGVRGI 738 Query: 784 NISEERCQELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 ++ E + + L + +LT E G+GKRT+ DF + R G+G+ VS N G Sbjct: 739 KLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAIDDFPVYGRGGQGVIGIQVSDRN--G 796 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +V V D+D+IIL++D+GTL+R V+E+ R T+GV + +E++V V R Sbjct: 797 PVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVTLIRLTNEEQLVGVVR 853 >gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 837 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/897 (43%), Positives = 557/897 (62%), Gaps = 89/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL M ++G+ +K + K A Sbjct: 8 LIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 RIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+TVDF PNYD EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E +D A++DNPDI + LM+ I+GPDFPTG +ILGR GI+ A+ TGRGSI++R Sbjct: 188 TETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSILVRSKH 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+E + +IVVTE+PYQVNKA ++ KIA+LVREK+I I L DES+R+G R+VIEL Sbjct: 248 HLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A DVILNQLYR T LQ+ F VNM+AL P++ + L+ +V + +V VRRTK Sbjct: 308 RKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDVTVRRTK 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA DRAH+L GL IA+ ++DE++ +IR S N AR LM++ Sbjct: 368 FELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQ-------------- 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q AILE+RL RLTGL RD I NE L I + DIL++ Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANH 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+L II+ EL VK+ RRT I E DM+DED I ED+V+T++ GY+KR+P Sbjct: 462 DRVLSIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTD 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P A+ Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G ++N+L+L++ E++ ++P P+ ESS +++F TK+G V+R +S+F I ++GK Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVRPDSESS----FLLFVTKNGLVKRTPMSEFDSIRQNGK 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ G Sbjct: 638 IAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV-DGS 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ A +S EG Sbjct: 696 IVVGAA---------------------------------------TSKEGT--------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L VSE G+GKRT+ ++R++ R KG++ +V+ N+ G LV+V VN ++ Sbjct: 708 -----HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGDEDA 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++V+D G +IR+ V +I I SR T+GV + + + DE V V + + E V+EA E Sbjct: 761 MIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEEDVEEASDQE 817 >gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] Length = 816 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/866 (43%), Positives = 543/866 (62%), Gaps = 86/866 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 5 VKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 65 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP H L Sbjct: 125 SKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPPHQL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ++ +PD+ + LME + GPDFPTGA I+GR GI+ AY TGRGSI +R + Sbjct: 185 GEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITLRAKAE 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +E I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R+VIE++ Sbjct: 245 IEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVIEVR 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T+LQ+ F +NM+AL +P+ L L+ ++ ++ V+ RRT++ Sbjct: 305 RDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIVIRRRTQF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA RAH+L GL IA+ +LDEV+ +IR S + A+ LM + Sbjct: 365 ELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTK--------------- 409 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLTGL R+ I E L I IL+ Sbjct: 410 -----------FQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQ 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II+ ELL +K++ + RRT IV G L+ ++DED I RE++VVT++H GY+KR+P+S Sbjct: 459 KVLQIIRDELLEIKEKFNDYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVS 518 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGG+G G+ ++DFV L I STH VLFF++ G VYK K + +P S A+ Sbjct: 519 TYRSQRRGGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYEIPEFSRTAK 578 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L++ + E I T++ E + ++ F TK G +R+ LS F I G I Sbjct: 579 GIPIVNLLNIEKDEVINTVIAI---EQFREDAFLFFTTKQGIAKRSPLSSFANIRNHGLI 635 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV+ I++ TK G +RFP + +R GR + GV+ I+L GD+ Sbjct: 636 AIHLHEGDELISVKLTDGHKHIIVGTKNGMLIRFPETDVRSM-GRTAAGVKAITLCSGDE 694 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M ++GD E Sbjct: 695 VVGM------------------------ESLNGDEE------------------------ 706 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL V+ G+GKRT + ++RI +R GKGI+ ++++ N G +VAV V + ++ Sbjct: 707 -----ILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GDVVAVKTVTGEEDLM 759 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880 L++ G +IR+ V++I I R T+GV Sbjct: 760 LMTASGVMIRMAVSDISIMGRNTQGV 785 >gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] Length = 824 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 242 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 243 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 415 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 416 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 456 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 457 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 516 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 517 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 576 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 577 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSSFA 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 634 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 692 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M I VE +++ Sbjct: 693 ITLGDEDQVVGMEI----------------------------------------VEEDVN 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 713 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 757 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + +D+ V +V + Sbjct: 758 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAK 807 Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%) Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590 IV ED+ V+ V+ GY KR P+ YR Q RGGKG + D++ + + V+ ++ Sbjct: 706 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 765 Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639 ++ G + R+P+ S R + ++ L + + + T+ +D Sbjct: 766 LITAAGV-----IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 811 >gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638] gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638] Length = 888 Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/831 (46%), Positives = 537/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL KDTVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 SKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR + Sbjct: 188 TEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ + W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+D+ RRT I D+ ED I RED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLINREDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L+ F Sbjct: 608 PEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN---VFMATASGTVKKTALTGFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + +D++L + G+ VRF +A+R GR + GVRG Sbjct: 665 RPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IRLAGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSR-----GTQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264] gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264] gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] Length = 823 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/890 (42%), Positives = 555/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGVSKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M I VE +++ Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + +D+ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAK 806 Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 9/111 (8%) Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590 IV ED+ V+ V+ GY KR P+ YR Q RGGKG + D++ + + V+ ++ Sbjct: 705 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 764 Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639 ++ G + R+P+ S R + ++ L + + + T+ +D Sbjct: 765 LITAAGV-----IIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 810 >gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W] gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W] Length = 823 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/898 (42%), Positives = 559/898 (62%), Gaps = 92/898 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319] gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319] Length = 836 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/891 (43%), Positives = 554/891 (62%), Gaps = 86/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 9 IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP H L Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TG+GSI++R Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSIIVRAKVE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S ++ I+V E+PYQVNKA ++EKIAEL R+K+I I DLRDESDR G R+VIE++ Sbjct: 249 IEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+ TSLQ+ F +N +AL +P+ L L+ ++ + V+ RRT++ Sbjct: 309 RDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ NLD V+ +IR S + AR LM + Sbjct: 369 ELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLTGL R+ I E SL I E IL+ Sbjct: 414 -----------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKAILADEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II++EL+ VK+ + RRT IV G + +EDED I R+D+V++++H GY+KR+P+S Sbjct: 463 KVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y++QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P A+ Sbjct: 523 TYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPEYGRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +++GE + I+ E W Y+ F TK G +R LS F I SG I Sbjct: 583 GIPIINLLEVDKGEWVNAIIRVDEFVDDW---YLFFTTKQGISKRTPLSSFENIRNSGLI 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV+ + D+++ TK G +RF + +R GR + GV+GI+L D+ Sbjct: 640 ALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGITLDSEDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M I+ EE+ Sbjct: 699 VIGMEIL---------------------------------------------EEQSD--- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L +++ G+GKRT ++R+ R GKG+R +++ N G +VA+ V+ + I+ Sbjct: 711 -----VLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKN--GDVVALKCVSQEEDIM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 L++ G LIRV V++I R T+GV + +E V +V +++ SE DE Sbjct: 764 LITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTSEDEDE 814 >gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1] gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1] Length = 823 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M I VE +++ Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda] Length = 878 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/894 (44%), Positives = 558/894 (62%), Gaps = 70/894 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 IEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +LN LY T +Q F +NMVAL+ +P+ L L+AFV R EVV RRT Sbjct: 308 KRDAVGRGVLNNLYTQTQMQVSFGINMVALHQGQPKLLDLKECLEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P A+ L+ ++W ++ ++ Sbjct: 368 FELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLARA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG +L+E Q +AIL+LRL +LTGL + + +E +L +I Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++ED + L + +TH ++L F S G +Y K+++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRGRMYWMKMYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 L S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ + DE++ V+ ++++L + G+ VRF A+R GR + GVR Sbjct: 664 SRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI LA D+V+S+ IV H + I + +R SG E T + + +G I Sbjct: 723 GIKLAGEDRVVSL-IVPHGEG----AILTVTQNGYGKR--SGVAEYPTKSR---ATQGVI 772 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 S +++ R+G + A V Sbjct: 773 S------------------------------IKVTERNGSVVGAVQVE------------ 790 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D DQI++++D GTL+R V+E+ I T+GV++ TA+DE VV ++R+ E Sbjct: 791 ---DCDQIMMITDAGTLVRTRVSEVSIVGCNTQGVILIRTAEDEHVVGLQRVVE 841 >gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus] Length = 903 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/887 (43%), Positives = 563/887 (63%), Gaps = 84/887 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y Sbjct: 6 ESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R LI+GQGNFGS+DGD AA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +L D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 126 ARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G +++ NPDI + LME ++GPDFPT +ILG++GI+ A+ TGRGSI +R Sbjct: 186 HNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQMRS 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVV 311 + IE+ G R++IVVTE+PYQVNKA M+EKIAEL R+K+I I DLRDE+ R G RVV Sbjct: 246 RAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGVRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++++ A+A V+LN LY+ T LQ+ F VNM+AL +P+ +L L+ ++ ++ VV R Sbjct: 306 IDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVVVRR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DRAH+L GL IA+ ++DE++R+IR S + A L ++ Sbjct: 366 RTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQ----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL RD I +E L I+E +IL Sbjct: 415 ---------------FKLSERQAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + +LL I++ EL+ +++ RR+ I + GL D+EDED I E +V+T+SH Y+KR Sbjct: 460 ADEEKLLQIVRNELIDIRERYGDERRSEIQLGGLDDIEDEDLIPEEQIVITLSHNNYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S YRAQ RGG+G G+ +EDFV+ L +STH +VLFF++ G VYK K + +P S Sbjct: 520 LPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G ++N + L+ E I+T++ + ES + Y+VFAT+ G V+R+ LS+F IN+ Sbjct: 580 RQSKGIPVVNAIELDNDESISTMIAVKDLESEDD--YLVFATRKGRVKRSALSNFSHINK 637 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +GKIA+ + DE+++V E DIL+ T +RF + +R GR + GV+GI+L Sbjct: 638 NGKIAISFKNDDELIAVRLTDGEQDILIGTSHASLIRFNETTLRPL-GRTAAGVKGITLR 696 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VI + + +A+ DE I Sbjct: 697 EDDKVIGLDVT---NAESDEEI-------------------------------------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V Sbjct: 716 ----------LVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERN--GNIVCITSVTGE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++V++ G +IR+ V +I RA +GV + +++ V +V ++ Sbjct: 764 EDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810 >gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] Length = 816 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/893 (41%), Positives = 550/893 (61%), Gaps = 84/893 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV NK Sbjct: 4 EPQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKP 63 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+A++YDA+ RMAQDWSLR L++GQGNFGS+DGD PAA RY Sbjct: 64 FKKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRY 123 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L DL KDTVDF+ N+D S QEP VL A+ P +L+NG GIAVGMATN+ Sbjct: 124 TEARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNM 183 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++G +A I+N DI ++ LM+ I+GPDFPT +I G GI+ AY TGRG +++ Sbjct: 184 PPHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGSQGIREAYRTGRGKVLM 243 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE T +EQI+VTEIPY VNKA ++E+ A+LV EK+I I+D+RDESD+ G R+ Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V +LKR A V+LN LY+ TSLQ F VN VAL KP+ L +++ FVA R EV++ Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGKPQTLNLKELIQHFVAHRHEVLL 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R+TKY LN+A+ R H+L G IA+ NLD ++ +IR S + E A++ L+Q Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQ----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE Q +AILELRL RLTG+ RD I E I+ I Sbjct: 413 ---------------TYQLSEQQAKAILELRLQRLTGMERDKILQEHRETTQLIERLQLI 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS R + +IK EL +K++ RRT I D+ ED I EDMV+T+S GY+KR Sbjct: 458 LSDRDLQMTLIKNELAELKEQYGDARRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS YR Q RGG G +++D++T LF+ STH +L F++LG V+ +KV+ LP GS Sbjct: 518 TPLSEYRIQNRGGVGARSTATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N++ + G+++ +++ +DE+ N+ Y++ T G +++ L +I Sbjct: 578 KSSKGRAIQNLIPIAPGDQVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINP 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+K++ D +L+V+ +N +++ + G+ + F +R GR S GVRGI+ Sbjct: 638 RTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSM-GRVSTGVRGIT 696 Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 LA D+V+ M V D + Sbjct: 697 LAGPEDRVVGMVTVYKPDIE---------------------------------------- 716 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+EKG GKR++ D+RI+ R GKG++ ++++ + GAL A+ V Sbjct: 717 ------------LLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITE--KTGALAAIEAV 762 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D D++++++ G IR+ V+ +RI R T+GV + + + + S+ +I E+ Sbjct: 763 TDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIAKITEN 815 >gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 878 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/831 (45%), Positives = 539/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 849 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/892 (42%), Positives = 551/892 (61%), Gaps = 86/892 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR+G R Sbjct: 242 VRAKSEIEEENG-RHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ ++ILN LY++T LQ F V M+AL + + L +L ++ F++EV+ Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM +N Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMD-EFN------ 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 414 -------------------LSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LLG+IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTITDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D + M I + D EE Sbjct: 691 KDDDIAVCMDIAV-------------------------DEEE------------------ 707 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE GFGKRT +++I +R G G+ +S+ + G LV Sbjct: 708 ----------LLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +D+++L++ G IR+ V++I SRA GV + T ++E++V++ +I +S+ Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSD 807 >gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131] Length = 886 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/885 (44%), Positives = 553/885 (62%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R L++ QGNFGS+DGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F +INR+GK Sbjct: 583 KGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNFSRINRNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + + DIL+ T +RFP S +R GR + GV+GI+L +GD Sbjct: 641 IAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+ + V HA++ DE Sbjct: 700 EVVGLD-VAHANS-VDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + V + + Sbjct: 715 ------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 767 MIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius] Length = 882 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/903 (43%), Positives = 566/903 (62%), Gaps = 85/903 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Sbjct: 3 ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDT+DF NYDG+ +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV+DG +++ NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGS++ Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308 +R + IE G RE+IVVTEIP+QVNKA M+EKIA+LVR+K+I I DLRDE+ R G Sbjct: 243 MRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGV 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++EV Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S + A L R Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547 IL+ +LL ++++EL +K++ RRT I G +D +EDED I E +V+T+SH Y Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P S YRAQ RGG+G G+ ++DFV+ L STH VLFF++ G VYK K + +P Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q++G ++N + L+Q E I+T++ + +S + ++VF TK G ++R+ LS+F + Sbjct: 577 ELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 INR+GKIA+K DE+++V + IL+ T +RF + +R + R + GV+GI Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD+VI + + D + DE Sbjct: 694 RLRDGDEVIGLDVA--DDDNKDE------------------------------------- 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+EKG+GKRTS D+R+SNR G G++ +++ N G LV + V Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+++G +IR+ V+ I + R +GV + ++ V +V ++ +E E ++ Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESD 820 Query: 907 EST 909 E T Sbjct: 821 EDT 823 >gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472] gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472] Length = 866 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/836 (44%), Positives = 535/836 (63%), Gaps = 37/836 (4%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ +WN+ Y K Sbjct: 8 KETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKK 67 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + R+AQD+SLR L++GQGNFGSVDGD AA RYTE Sbjct: 68 SARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEI 127 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH LL D+ K+TVDF PNYDGS EP++L A+ PN+LVNG GIAVGMATNIP H Sbjct: 128 RMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMATNIPPH 187 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+A++ N D+ +D L++II PDFPT +I G G+K Y TGRG +++R Sbjct: 188 NLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGRVIMRAR 247 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E GDRE I+V EIPYQVNKA +LE+I+ELVR+K+I I+DLRDESD+ G RVVI Sbjct: 248 THTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDKSGMRVVI 307 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN L++ T LQ F +NMVAL +P L IL+ F+ R EVV RR Sbjct: 308 ELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQPRLLNLKQILEEFLRHRREVVTRR 367 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R H+L GLA+A++N+DE++ +I+ S P A+ LM R+W +S ++D++ Sbjct: 368 TIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRSSLVEDMLS 427 Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ D ++ + DG +LS+ Q +AIL++RL RLTGL +D I E + Sbjct: 428 RVEGDKARPENIDPAFGMKEDG-YHLSDTQAQAILDMRLQRLTGLEQDKIVGEYREIMDV 486 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + LDIL+ R+ II +EL +++ + PRR+ I D+ ED I +DMVVT+S Sbjct: 487 ILDLLDILAKPERISQIIGEELTAIRAQFGDPRRSEIEPYGGDINIEDLITPQDMVVTIS 546 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+K P+ Y +QRRGG+G+ +D+DF+ LF+ +TH VL FSS G Y KV Sbjct: 547 HTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSRGRCYWRKV 606 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + LP G Q+RGK ++N+L L +GE+I ++P E ++ +V T +G V++ L Sbjct: 607 YDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKE---FRDDQFVFMCTANGTVKKTPLV 663 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 DF + +G IA+ LD D ++ V ++ I+L + G+ VRF + +R GRN+ G Sbjct: 664 DFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETDVRPM-GRNATG 722 Query: 724 VRGISLAKGDQVISM--------AIVLHADADYDERIC---YMKHMSAQRRLISGDTEEI 772 VRG+ L QVIS+ ++ +D Y +R C + + + +I+ D + Sbjct: 723 VRGMMLGDDHQVISLLVSNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIAMDLTDK 782 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 T LK V ++ EE I+ ++ G RT + R + RS +G+R Sbjct: 783 TGLK---LVAASLVEETDD--------IMLITTGGVLIRTKVAEVRETGRSAQGVR 827 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 19/211 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKV 603 G VK+ PL + R G V + D D + + + ++ FS G + E Sbjct: 655 GTVKKTPLVDFSRPRTAGI--IAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSETD 712 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 R P R + + L ++ +++ S+ V+ A+ G +R + Sbjct: 713 VR-----PMGRNATGVRGMMLGDDHQVISLLV-----SNSEQQMVLTASDGGYGKRTCVG 762 Query: 664 DFIQINR--SGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 DF + +R G IAM L + ++++ + +DI+L T G +R ++ +R GR Sbjct: 763 DFRRTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDIMLITTGGVLIRTKVAEVRE-TGR 821 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDE 750 ++ GVR I+L +G+++I + IV ++A+ E Sbjct: 822 SAQGVRLINLDEGEKLIGLEIVAESEAECAE 852 >gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43] gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43] Length = 849 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/905 (42%), Positives = 556/905 (61%), Gaps = 90/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR+G R Sbjct: 242 VRAKSEIEEENG-RHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A+ ++ILN LY++T LQ F V M+AL + + L +L ++ F++EV+ Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM +N Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMD-EFN------ 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 414 -------------------LSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LLG+IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTVTDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D + M I + D EE Sbjct: 691 KDDDIAVCMDIAV-------------------------DEEE------------------ 707 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE GFGKRT +++I +R G G+ +S+ + G LV Sbjct: 708 ----------LLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD----E 905 +D+++L++ G IR+ V++I SRA GV + T ++E++V++ +I +S+ D E Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDEDLEENE 815 Query: 906 AESTE 910 ES E Sbjct: 816 FESNE 820 >gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 878 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/831 (45%), Positives = 538/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAAEEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] Length = 815 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/879 (44%), Positives = 549/879 (62%), Gaps = 85/879 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y K A Sbjct: 10 VVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE R+ Sbjct: 70 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP HN+ Sbjct: 130 SKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G + +IDNP+ ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R +H Sbjct: 190 VEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VIEL+ Sbjct: 250 IETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELR 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++ +VILNQLY++T LQ F V M+AL +P L IL +++ +E V+ RRT+Y Sbjct: 310 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITRRTQY 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 370 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 DG L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ R Sbjct: 413 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRM 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++L IIK EL+ V+D+ RRT I +M+ D I ED+VVT++ Y+KR+PL Sbjct: 464 KVLAIIKDELIEVRDKYGDERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIPLDT 523 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G V+ K + +P QA+G Sbjct: 524 YRRQRRGGVGVKGMGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKG 583 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A+IN+L++ ERIT ++ E + + ++ TK G V++ L++F I +SG A Sbjct: 584 TAIINLLAVEADERITAVIQVREFKP---DRFLFLGTKRGVVKKTPLAEFANIRKSGLKA 640 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++ V+ EN I+L T+LG+ + FP S +R GR + GVRGI LA GD+V Sbjct: 641 VNLDEEDELIGVKFTDGENRIMLGTRLGKAIAFPESGVRSM-GRVTRGVRGIMLADGDEV 699 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++M I LK+DS V Sbjct: 700 VAMDI----------------------------------LKSDSEV-------------- 711 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V ++ +++L Sbjct: 712 -----LTVTEGGYGKRTAAGEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVREDQELML 764 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ +G +IR VNEI SR T+GV + + A+++RV S+ Sbjct: 765 ITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASM 803 >gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] Length = 828 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/863 (44%), Positives = 547/863 (63%), Gaps = 79/863 (9%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M ++ ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGS Sbjct: 1 MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD AA RYTE R+ K AH LL DL K+TVDF NYDG+ + P VL R PN+LVNG Sbjct: 61 VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNL EVVDG +A+IDNPDID++ LME I GPDFPT A I GR+GI Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATISGRSGIVE 180 Query: 240 AYATGRGSIVIRGVSHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 AY TGRG I +R + I EKT +E I+VTEIPYQVNKA ++EKIAELV+EKR+ I Sbjct: 181 AYKTGRGRIHLRAQAEIEVDEKTG--KETIIVTEIPYQVNKARLIEKIAELVKEKRVEGI 238 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 + LRDESD+ G R+VIE++RG +V+LN LY T LQ +F +NMVAL+ +P F L Sbjct: 239 SALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQPRLFNLRD 298 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +L FV R EVV RR+ Y L KAR+RAH+L GLAI++AN+DE++ +IR SP P A+ Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358 Query: 417 LMQRSWNASDIKDLIDL--IDDS-------SYTIGSDGTMYLSEVQTRAILELRLARLTG 467 L+ R+W D+ +++ +D + Y I DG +L+E Q +AIL+LRL +LTG Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGI-RDGNYHLTEEQAQAILDLRLHKLTG 417 Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 L + I +E L +I E L IL+S RL+ +I++EL+ +++ R+T I D+ Sbjct: 418 LEHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDI 477 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 ED I ED+V+T+SH GYVK PL+ Y AQRRGGKG++ M+DEDF+ L++ +TH Sbjct: 478 SMEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHD 537 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWN 644 ++L FS+ G +Y KV++LP+ S +RGK ++N+L L ERIT I+P +PED+ Sbjct: 538 TILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYPEDK---- 593 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 +VV AT+ G +++ L ++ + G IA+ L DE++ V+ +I+L + G+ Sbjct: 594 --FVVMATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGK 651 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VRF +R GR + GVRGI L +G +V+S+ + Sbjct: 652 VVRFAEEQVRSM-GRTATGVRGIRLEEGQRVVSLIV------------------------ 686 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 +E + +E +LTV+E G+GKRT ++ +R+ Sbjct: 687 -------------------------PREYEEEEANVLTVTENGYGKRTPLSEYPAKSRAT 721 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KG+ + VS+ N G++V V D ++I+L+S+KGTL+R VNE+ R T+GV + Sbjct: 722 KGVVSIKVSERN--GSVVGAMEVIDGNEIMLISNKGTLVRTRVNEVSTVGRNTQGVRLIR 779 Query: 885 TAKDERVVSVERIRESEIVDEAE 907 TA DE+VV ++RI E +DE E Sbjct: 780 TADDEKVVGLQRIDE---IDEDE 799 >gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] Length = 878 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/832 (45%), Positives = 542/832 (65%), Gaps = 37/832 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LM I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + + I DG +L+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPQFGI-HDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL S RL+ +I++EL ++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF +A+R GR + GVR Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722 Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-- 776 GI LA D V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 723 GIKLAGEDSVVSLIIPRGEGAILTVTQNGYGKRTAEGEYPTKSR-----GTQGVISIKVT 777 Query: 777 -NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 778 ERNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] Length = 811 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/884 (42%), Positives = 547/884 (61%), Gaps = 86/884 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ ++NK Y K AR+ Sbjct: 10 ISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKKSARVV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+AAIYD + RMAQD+SLR L++GQGNFGS+DGDP AA RYTE R+QK Sbjct: 70 GDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEVRMQKM 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 AH +L+DL K+TVDF PNYD + QEP VL R PN+LVNG GIAVGMATNIP HNLGE+ Sbjct: 130 AHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPHNLGEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 D A+I+NP + + L++ + GPDFPTG +I GR GI +AY+TGRG I IR +EK Sbjct: 190 TDALCALIENPKLMPEELLQYVPGPDFPTGGIIYGRAGIHSAYSTGRGIIKIRARIMVEK 249 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + +E +VVTE+PYQVNKA ++EKIA L+++K I +A +RDESDR+G R+ + LK+ Sbjct: 250 DNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIAMGLKKD 309 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A +I+N+LY++T L++ F + ++++ +PE L L+ F+A R+ VV+RRTKY L Sbjct: 310 EMASIIINKLYKHTQLENSFGIILLSIVNNRPELLNLKETLQYFIAHRKVVVIRRTKYEL 369 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L G IA+ NLDEVV++IR S P AR LM R Sbjct: 370 AKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMAR----------------- 412 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+++Q +AIL++RL +LTGL + + E L I +IL+S + Sbjct: 413 ---------FDLTQIQAQAILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILASDQLV 463 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L I++ ELL V+ E RRT IV+ ++ ED IV EDMVVT+SH GY+KR PL++Y Sbjct: 464 LEIVRDELLEVRTEYVDERRTEIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNPLTLYH 523 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGGKG+ G+ DEDFV+ LF+ STH ++LFF++LG VY KV+ +P A+GK Sbjct: 524 SQRRGGKGKIGMGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRAAKGKF 583 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + N+L+L E++ T++ E E +N ++ ATK G +++ L + +G IA+ Sbjct: 584 ISNLLNLAPDEQLATVLDVKEFEPGYN---IIMATKDGIIKKTDLLAYSNPRSNGIIALS 640 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L D++++ ++ L + G+ +RF S +R GR S GV+G++LA GD ++ Sbjct: 641 LGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRAM-GRVSRGVKGMTLAAGDHLVG 699 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ H Sbjct: 700 MEVLTHG----------------------------------------------------- 706 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 + + + +E GFGKRTS ++ + R GKG+ + N GA+V++ V+++D ++L++ Sbjct: 707 KTLFSCTENGFGKRTSLDEYPLQKRGGKGVITIRTHERN--GAVVSILVVSNDDDLMLMT 764 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D G +IR+P+ +I + SR T GV + E+++ +R+ E + Sbjct: 765 DAGKIIRMPMGDISVISRNTMGVRLMGMEPGEKLIGAQRLAEKD 808 >gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3] gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3] Length = 823 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 555/893 (62%), Gaps = 92/893 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L DQV+ M I VE Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] Length = 853 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/884 (42%), Positives = 546/884 (61%), Gaps = 88/884 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 SV I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRRILF M +G ++K + K AR+ Sbjct: 10 SVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL RMAQ WS+R +L++GQGNFGSVDGD PAA RYTE R+ + Sbjct: 70 VGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMSR 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ KDTVDF PNYD S +EP VL ARYPN+L+NG GIAVGMATNIP HNL E Sbjct: 130 LAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLAE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++ +A+++NP+ID D LM+I+ GPDFPTG I GR+GI++A+ TGRGS+ +R + +E Sbjct: 190 TINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSAFMTGRGSVTMRARAIVE 249 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 R+ +++TE+PYQVNKA ++E IA VR+K++ I DLRDESDR G R+ IELK+ Sbjct: 250 VNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIELKK 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 +V+LN LY++T LQ F N++AL +P+ + +L F+ R +VV RR + Sbjct: 310 NEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLLHFLDHRRQVVTRRCLFD 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L GL IA+ +DEV+++IR S A+ LM+ Sbjct: 370 LAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEH---------------- 413 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL++RL RLTGL RD I+ E + I IL+ Sbjct: 414 ----------FGLSDLQAQAILDMRLQRLTGLERDKIKAEYEEIQRLITHLKAILADEKL 463 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I +E+ +V+D PRR+ I++ ++ ED I EDMVVT+S+ GY+KR S+Y Sbjct: 464 LMNVIVEEMEAVRDRYADPRRSEIMDETAELSVEDLITEEDMVVTISNEGYIKRNATSLY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGG+G++ + +DEDFV L + STH +LFFS G V+++KV+ +P ARGK Sbjct: 524 RAQRRGGQGKTAMTTKDEDFVAQLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGK 583 Query: 617 ALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 AL+N+L + + ERI+ + E DE N +++ ATK+G V++ +LS++ I +G IA Sbjct: 584 ALVNLLPVEKDERISATLAIREFDE----NRFIIMATKNGVVKKTRLSEYQNIRANGIIA 639 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 +KLD D ++SV + D++L T G+ +RF S +R GR++ GV G+ L V Sbjct: 640 IKLDDDDGLISVLVSNGDEDVMLATSGGKAIRFAESDVRPM-GRSTRGVTGMRLPGDCNV 698 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM +V ++E T Sbjct: 699 ISMTLV---------------------------SDEAT---------------------- 709 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L VSE GFGKRTS ++ + R G+G+ N G +VA V+D+DQ+++ Sbjct: 710 ----LLAVSENGFGKRTSVSEYNVQKRGGQGVFTLKTGGRN--GDMVAALLVHDDDQVMM 763 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++D G L+R+ +N + + R T+GV + + + ERV+ R+ E Sbjct: 764 MTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAE 807 >gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] Length = 840 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/900 (41%), Positives = 555/900 (61%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 10 VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 70 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ + +IDN + ++ L+EII+GPDFPTGA ILGR+GI AY TGRG I + Sbjct: 190 REVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYRTGRGKIKV 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +++I+VTE+PY VNKA ++EKIA LVREK++ I +LRDESDR G R+ Sbjct: 250 RAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDESDRSGMRI 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+A+VILNQLY++T LQ F V M+AL +P+ L +L ++ +++VV Sbjct: 310 CIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYLTHQKDVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA N+DEV++IIR + N + A+ ELM+R Sbjct: 370 RRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELMER---------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL L GL R + E L I E I Sbjct: 420 ----------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+IK E+ ++D+ RRT+I + D+ ED I RE+ V+T++ LGY+KR Sbjct: 464 LADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITMTKLGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ DED++ +LF+ +TH ++FF++ G VY+ K + +P Sbjct: 524 MTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESG 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L GE+IT ++P + E Y++ ATK+G V+++ + ++ I + Sbjct: 584 RTARGSAIVNLLQLQPGEKITAVIPLVDYEEGK---YLLMATKYGVVKKSSIMEYANIRK 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ + D+ L TK GQC+RF S +R GR S+GVRGI+L Sbjct: 641 TGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSMGVRGINLT 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M + DS E Sbjct: 700 GDDEVIGMQL-------------------------------------DSQGEA------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VS G GKRT + +F +R GKGI+ +++ + G +V V VND+ Sbjct: 716 ---------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVVGVKAVNDD 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++I++++ +G +IR V+ I I R T GV + + ++ V S+ ++RE ++ DE E + Sbjct: 765 NEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKLEDEMEKIQ 824 >gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2] Length = 827 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/897 (41%), Positives = 554/897 (61%), Gaps = 90/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 10 VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 70 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ + +IDN + ++ L+EII+GPDFPTGA ILGR+GI AY TGRG I + Sbjct: 190 REVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYRTGRGKIKV 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +++I+VTE+PY VNKA ++EKIA LVREK++ I +LRDESDR G R+ Sbjct: 250 RAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDESDRSGMRI 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+A+VILNQLY++T LQ F V M+AL +P+ L +L ++ +++VV Sbjct: 310 CIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYLTHQKDVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA N+DEV++IIR + N + A+ ELM+R Sbjct: 370 RRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELMER---------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL L GL R + E L I E I Sbjct: 420 ----------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+IK E+ ++D+ RRT+I + D+ ED I RE+ V+T++ LGY+KR Sbjct: 464 LADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITMTKLGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ DED++ +LF+ +TH ++FF++ G VY+ K + +P Sbjct: 524 MTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESG 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L GE+IT ++P + E Y++ ATK+G V+++ + ++ I + Sbjct: 584 RTARGSAIVNLLQLQPGEKITAVIPLVDYEEGK---YLLMATKYGVVKKSSIMEYANIRK 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ + D+ L TK GQC+RF S +R GR S+GVRGI+L Sbjct: 641 TGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSMGVRGINLT 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M + DS E Sbjct: 700 GDDEVIGMQL-------------------------------------DSQGEA------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VS G GKRT + +F +R GKGI+ +++ + G +V V VND+ Sbjct: 716 ---------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVVGVKAVNDD 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++I++++ +G +IR V+ I I R T GV + + ++ V S+ ++RE ++ DE E Sbjct: 765 NEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKLEDEME 821 >gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528] gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528] Length = 823 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I V I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 DEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +IDNPDI + LM I+GPDFPT +I+G +GI++AY TGRG I++R Sbjct: 183 PHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ G R +I++TEIPYQVNK+ ++E +A+LV+ K+I I+D+RDESDR G R+V Sbjct: 243 AKAEIEEVKG-RNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A+ +V LNQLY++T +Q F + M++L +P+ L +L ++ F+EE+V R Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA+ RAH+L GL IA+ ++DEV+ +IR S E AR LM Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSE----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 411 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIENEYNELMETIKHLKEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ LL IIK EL+ ++D+ R+T I D+ ED I +++V+T++H GY+KR+ Sbjct: 456 ENKELLLKIIKDELIEIRDKYGDERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRI 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH ++LFF++ G VYK K + +P Sbjct: 516 SADTYSSQRRGGKGIQAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N++ L E+I ++ F E + Y + AT+ G +++ K+S + I ++ Sbjct: 576 TAKGTNLVNLIPLQGDEQIQAVISFKEVDKDN---YFIMATRCGLIKKTKISQYASIRKN 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V T E++IL+ TK G +RF +R GRN+ GVR I+L Sbjct: 633 GLNAINLKDEDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRP-TGRNTTGVRAITLRT 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD ++M IV ++ Q Sbjct: 692 GDIAVAMDIV----------------------------------------------DKSQ 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + +L +SE GFGKRT ++ I R GKGI V++ + G +V V D D Sbjct: 706 D-------VLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTE--KTGLIVGARVVKDED 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++ IR+ V+EI + +R T GV + T +++RVV++ +I S+ Sbjct: 757 EMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSD 806 >gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] Length = 904 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/896 (42%), Positives = 552/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ G ++Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S A+ + DE S D E+ L Sbjct: 719 RTAKGVRGMRVSFASSTLSEE---DAEVENDE---------------SDDNEDSADLNVV 760 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 S + + E +L S G+GKRT DF R GKG+ A S+ N Sbjct: 761 SRIVSLVVVPETGE-------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV ++++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 817 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/799 (46%), Positives = 527/799 (65%), Gaps = 28/799 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKL 795 + SV G + + C ++ + Sbjct: 779 RNGSVVGAVQVDDCDQIMM 797 >gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] Length = 873 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/874 (43%), Positives = 536/874 (61%), Gaps = 60/874 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VSI DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRIL+ M + + + KCAR+ Sbjct: 13 VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YDAL RM Q +SLR LI+GQGN+GSVDGD PAA RYTE RL + Sbjct: 73 GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLSRM 132 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL KDTVDF PNYD S EP VL A++P +LVNG GGIAVGMATNIP HNLGE+ Sbjct: 133 AVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGEI 192 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D +A+I NPD+ L+ L+ ++ GPDFPTG +I G++GI AY TGRGSI +RG S +EK Sbjct: 193 IDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGSITMRGRSQVEK 252 Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 T GDREQ+V TEIPYQVNKA ++ KIAE ++EKRI I+++RDESDR+G R+V+ELK+ Sbjct: 253 TMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELKKD 312 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 V+LNQLYR T LQ+ F V +++ +P +L L F+ R EVV RR ++ L Sbjct: 313 IFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRREVVTRRCRFEL 372 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLIDLIDD 436 +A + ++ GL +A +++D +V IR S +P+ AR L + + + Sbjct: 373 RQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRAGRPEP 432 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 + G +LSE Q +AILE+RL+RLTGL R+ + E L I+ IL+ Sbjct: 433 ECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAILADMGL 492 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL +K RRT IV +++ ED I EDMVVT+SH GY+KR P S Y Sbjct: 493 LMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHAGYLKRTPTSTY 552 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQRRGGKG G+ R+ED+V+ LF+ STH+ V FFS G V+ +KV+ +P A+G+ Sbjct: 553 RAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQAPRNAKGR 612 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++N + + GE++ I P P S +VV T+ G +++ L+++ G I + Sbjct: 613 AIVNFVGMEPGEKVAAITPVP---SFDGETFVVTLTRRGQIKKTALNEYENYRDKGIIGV 669 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 +++ D++ + + ++++ T+ G +RFP +R GR ++GV+GI L +GD V+ Sbjct: 670 RIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP-TGRATMGVKGIELDEGDVVV 728 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + +SGD + Sbjct: 729 GLG-------------------------VSGDGRD------------------------- 738 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L V E+G+GK+T +FR+ +R GKG+ D S+ N G +V V V+ +D++++V Sbjct: 739 --RVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN--GPVVGVAMVSPSDEVLIV 794 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 +D+G +IR +EIR R +GV I +DER Sbjct: 795 TDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 >gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter calcoaceticus PHEA-2] Length = 904 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/896 (42%), Positives = 554/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G ++Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DAD + SA L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDADVENDESDDNDDSADSNLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032] gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus SAFR-032] Length = 839 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/895 (43%), Positives = 559/895 (62%), Gaps = 90/895 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NP++ LM+II GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S+IE+TS +++IV+ EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+ V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ ++ Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +Y+ LSE Q +AIL++RL RLTGL R+ I +E L I E Sbjct: 413 --------NYS--------LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL +K+ + RRT IV G+ +EDED I E++V+T++H GY+ Sbjct: 457 ILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P E DE+S Y+ F T+HG +R LS F Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENS----YLFFTTRHGVSKRTTLSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+++V E I++ TK G +RF + +R GR + GV+GI Sbjct: 633 IRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L++ D V+ M I L DA+ Sbjct: 692 TLSEDDIVVGMEI-LEPDAN---------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+EKG+GK T ++R+ +R GKG++ ++ N G LVAV Sbjct: 711 ------------VLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNN--GPLVAVKAT 756 Query: 848 N--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 N + +++++ G +IR+ V++I R T+GV + +E V +V + +S Sbjct: 757 NAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQS 811 >gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] Length = 859 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/897 (42%), Positives = 558/897 (62%), Gaps = 84/897 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + E E I ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MAEETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +G++ NK + K AR+ GEV+GKYHPHG++++YD + RMAQ WSLR +LI+GQGNFGS+ Sbjct: 61 QGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL+K A +L D+ KDTVDFR N+D S +EP VL AR PN+LVNG Sbjct: 121 DGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNI HNL EV+D +A ID+ +I + LM+ ++ PDFPTG +I G G++ A Sbjct: 181 GIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIYGYEGVREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 + TGRG IV+R + IE S +RE+I+VTEIPYQVNKA M+E+ AELV EK+I I+++R Sbjct: 241 FETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+V E+KR A+A ++LN LY+YT+LQ+ FSVN +AL +P L ++ Sbjct: 301 DESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGRPMLLNLKDMIVH 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EVVVRRTK+ L +A RAH+L GL IA+ +LDEV+ +IR S P+ AR LM + Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I+ E L Sbjct: 421 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYADL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +I+ +L+ S + IIK+EL+ VK+ RRT IV ++ ED I E++V+ Sbjct: 455 MKQIEYLKSVLADESLRMSIIKEELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR PL+ YR Q RGGKG G RDEDF+ +F+ S H +LFF+ G Y Sbjct: 515 TISHEGYIKRTPLTEYRTQGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYW 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658 +V+ +P GS ++G+A+ NI+++++ E+I + +D+ N +++ TK G ++ Sbjct: 575 LRVFEIPEGSRTSKGRAIQNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIK 634 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ DE+L T ++I++ + G+ +RF S +R G Sbjct: 635 KTTLEAYSRPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPM-G 693 Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRGISLA D+V+ M IS D+ E T Sbjct: 694 RTATGVRGISLAHDKDEVVGM--------------------------ISIDSPEST---- 723 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L VSEKG+GKRT D+R++NR GKG++ +++ ++ Sbjct: 724 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINIT--DK 759 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LVA+ V DND +++++ G +IR+ ++ +R+ RAT+GV + + + + + SV Sbjct: 760 TGQLVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816 >gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271] gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271] Length = 823 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 555/893 (62%), Gaps = 92/893 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L DQV+ M I VE Sbjct: 689 VKAITLGDEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +++ +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVA Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVA 753 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 754 VKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] Length = 823 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M I VE +++ Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L] gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus E33L] Length = 823 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/895 (42%), Positives = 558/895 (62%), Gaps = 86/895 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + DQV+ M I VE +++ Sbjct: 692 ITLGEEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811 >gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 835 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/894 (42%), Positives = 567/894 (63%), Gaps = 90/894 (10%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +I++EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI G Sbjct: 15 NISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVG 74 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 EV+GKYHPHG+ A+YD++ RMAQ++S R +LI+G GNFGS+DGD AA RYTE R+ K + Sbjct: 75 EVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAAAMRYTEARMSKIS 134 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 L+ D+ K+TVDF NYDG +EPVVL +R+PNVLVNGG GIAVGMATNIP HNLGEV+ Sbjct: 135 MELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGMATNIPPHNLGEVI 194 Query: 200 DGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 D +A+IDNPDI + LME I GPDFPTGA++LGR+GIK+A+ TGRGS+V+R IE+ Sbjct: 195 DATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETGRGSVVMRAKVDIEE 254 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + +I+++EIPYQVNKA ++EKIA LVR+K I I DLRDES+R+G R+V+EL+R Sbjct: 255 MKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESNREGIRIVVELRREV 314 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A+V+LNQLYR T+LQS F VNM+AL +PE L+ +L + + E+V RRT++ L Sbjct: 315 QAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDHQIEIVTRRTQFELK 374 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPN-PETARRELMQRSWNASDIKDLIDLIDDS 437 KA DRAH+L GL IA+ ++DEV+ IIR S + PE R + +++ Sbjct: 375 KAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITR--LNEAFD-------------- 418 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+E+Q++A+L+++L RLTGL RD + NE N L I I + DIL++ RL Sbjct: 419 -----------LTEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRL 467 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L IIK EL+ +K + RR+ IVE +DM DED I ED+VVT++ GY+KR + + Sbjct: 468 LTIIKDELIEIKTKFGDDRRSEIVEADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFN 527 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGGKG G+ DED V +STH +L F++LG VY+ + + +P S ++G Sbjct: 528 TQNRGGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIP 587 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L+L +GE + T++ +D+ S Y F TK G V+R ++ +F I ++GKIA+ Sbjct: 588 VVNLLNLTEGETVKTLVKVAKDDESK---YAFFVTKQGIVKRVEVQEFESIRQNGKIAIT 644 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE++ V +N+I++ G+ VRF + +R GR + GV G ++ +G Sbjct: 645 LREDDELVGVRMTNGDNEIIIGGSNGKAVRFDENEVRSM-GRTASGVIGFNVDEG----- 698 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 E+ + D EG Sbjct: 699 ---------------------------------EVVGIATDR--EG-------------- 709 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q+IL V+EKG+GKRT ++R + R KG++ ++++ N G LV++ VN +++ +++S Sbjct: 710 QYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKN--GNLVSLRAVNGDEEALIIS 767 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAESTE 910 ++GT+IR ++ I I R+T GV + + + + V V ++ + E DE ++T+ Sbjct: 768 NEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAILQPTVEEPDEEQTTD 821 >gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273] gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273] Length = 823 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I G ++ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M I VE +++ Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%) Query: 533 IVREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVL 590 IV ED+ V+ V+ GY KR P+ YR Q RGGKG + D++ + + V+ ++ Sbjct: 705 IVEEDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIM 764 Query: 591 FFSSLGFVYKEKVWRLPIG--SPQARGKALINILSLNQGERITTIMPFPED 639 ++ G + R+P+ S R + ++ L + + T+ +D Sbjct: 765 LITAAGI-----IIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810 >gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2] gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2] Length = 837 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/881 (43%), Positives = 551/881 (62%), Gaps = 89/881 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL M ++G+ +K + K A Sbjct: 8 LIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPFKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ KDTVDF PNYD EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E +D A++DNP+I + LM+ I+GPDFPTG +ILGR GI+ A+ TGRGSI++R Sbjct: 188 TETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMVRSKH 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+E + +IVVTEIPYQVNKA ++ KIA+LVREK+I I L DES+R+G R+VIEL Sbjct: 248 HLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A DVILNQLYR T LQ+ F VNM+AL P++ + L+ +V + +V VRRTK Sbjct: 308 RKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTVRRTK 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA DRAH+L GL IA+ ++DE++ +IR S N AR LM++ Sbjct: 368 FELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQ-------------- 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q AILE+RL RLTGL RD I NE L I + DIL++ Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANH 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+LGII+ EL VK+ RRT I E DM+DED I ED+V+T++ GY+KR+P Sbjct: 462 DRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTD 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P A+ Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G ++N+L+L++ E++ ++P P+ ESS +++F TK+G V+R +S+F I ++GK Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVRPDSESS----FLLFVTKNGLVKRTPMSEFDSIRQNGK 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ G Sbjct: 638 IAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV-DGS 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ A +S EG Sbjct: 696 IVVGAA---------------------------------------TSKEGT--------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L VSE G+GKRT+ ++R++ R KG++ +V+ N+ G LV+V VN ++ Sbjct: 708 -----HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGDEDA 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++V++ G +IR+ V++I I SR T+GV + + A +E V V Sbjct: 761 MIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESVAKV 801 >gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] Length = 904 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/896 (42%), Positives = 554/896 (61%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G ++Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ ++N+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R L F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ +S DA+ + SA L+S I SL Sbjct: 719 RTAKGVRGMRVSFASSTLS-----EEDAEVENDESDDNDDSADSNLVS----RIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 812 GELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/831 (45%), Positives = 538/831 (64%), Gaps = 35/831 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+Y + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +E++VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PL+ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++L Sbjct: 548 YVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S ARG+ ++N+L L ERIT I+P E E N V AT G V++ L++F Sbjct: 608 PEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFS 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L+ DE++ V+ + ++++L + G+ VRF A+R GR + GVRG Sbjct: 665 RPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRG 723 Query: 727 ISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK--- 776 I LA D+V+S+ AI+ Y +R ++ + R T+ + S+K Sbjct: 724 IKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRA-----TQGVISIKVTE 778 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + SV G + + C + I+ +++ G RT + + R+ +G+ Sbjct: 779 RNGSVVGAVQVDDCDQ-------IMMITDAGTLVRTRVSEISVVGRNTQGV 822 >gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] Length = 865 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/890 (42%), Positives = 542/890 (60%), Gaps = 84/890 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I ++I DEM+++Y+ YA++VI+ RA+PD+RDGLKPVHRR+L+GM +G+ +NK Sbjct: 3 ESSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GEV+GKYHPHG+A++YD + RMAQ WSLR L++GQGNFGS+DGD PAA RY Sbjct: 63 FKKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL++ A LL DL KDT+DF+PN+D S +EP VL + P++L+NG GIAVGMATN+ Sbjct: 123 TEARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVVDG +A +DN DI ++ L++ I PDFPTG +I G G+K A TGRG +VI Sbjct: 183 PPHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVI 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RGV+ IE T RE+I+VTEIPY VNKA ++EK A LV+EKRI I+D+RDESDR G R+ Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V ELKR A V LNQLY+YT+LQS F VN VAL +PE L ++ FV R EV+ Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVIY 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L +A+ R H+L GL IA+ N+DEV+ +IR S + ETA+ L+++ Sbjct: 363 RRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEK---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL RLT + RD I E + IKE I Sbjct: 413 ----------------FELSEIQAKAILDIRLQRLTAMERDKIVAEHKQISELIKELEAI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + + IIK+EL +KD RRT I D+ DED I E+MV+T+SH GY+KR Sbjct: 457 LADKLLRVDIIKEELTEMKDRYGDARRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 L YR Q RGG G G +D+DF LF+ STH +L F++ G V+ K + +P + Sbjct: 517 TSLDEYRTQNRGGVGSRGTSKKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVA 576 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G+A+ N+L + +G+ I ++ +D N Y+V T+ G +++ +L F + Sbjct: 577 KTAKGRAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRP 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ ++ D++L V+ EN+I+L + G+ + F +R GR + GVRGI+ Sbjct: 637 RQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSM-GRTAAGVRGIT 695 Query: 729 LAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D +V+ M V DA Sbjct: 696 LDGDDNRVVGMVCVARDDAS---------------------------------------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L VSE G+GKR+S D+RI+NR GKG+ ++ ++ G LVA+ Sbjct: 716 ------------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQIT--DKTGRLVAIKEA 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D D +IL++ G IR+ ++++R+ RAT+GV + +D+ + SV ++ Sbjct: 762 VDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKV 811 >gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125] gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.] gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans] gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125] Length = 833 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/888 (42%), Positives = 558/888 (62%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+++ + ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + L+ D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NPDI + LME I GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ G +++I+V EIPYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAKTEIEEHHG-KQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L+ ++A + V+ Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L I E Sbjct: 413 -----------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ ++L II++ELL +K++ + R+T I EDED I R+++V+T++H GY+K Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+Q+RGG+G G+ ++DFV LF ++H ++LFF++ G VY+ K + +P Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L + Q E I+TI+P E + Y+ F TK G +R +LS F I Sbjct: 576 GRTAKGIPIINLLQIEQDEYISTIIPI---EEFTEDHYLFFMTKDGIAKRTQLSSFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G A+ L DE+ V + ++++ T+ G +RF + +R+ GR + GV+GISL Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLM-GRTATGVKGISL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD D V +I E+ Sbjct: 692 ------------------------------------TGD---------DHVVGMDIVED- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+EKGFGKRT D+RI R GKGI+ ++++ N G LV++ V+ Sbjct: 706 -------GQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKN--GPLVSLKVVSV 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G +IR+ V +I + R T+GV + A+ E V +V R+ Sbjct: 757 DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVARV 804 >gi|153007330|ref|YP_001381655.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5] gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5] Length = 891 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/908 (43%), Positives = 548/908 (60%), Gaps = 102/908 (11%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA Sbjct: 26 AQVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAG 85 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTE RL+ Sbjct: 86 VVGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLE 145 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A FLL D+ K+TVD+ PN+D S EP+VL R+PN+LVNG GIAVGMATNIP HN+G Sbjct: 146 RLADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMG 205 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+D +I+NP + + LM I GPDFPT +I GR GI+ AY GRG+I +R + I Sbjct: 206 EVLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASI 265 Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +RE IVVTEIPYQVNKA ++E IA+LVREKR+ I+DLRDES R+G RVVIELK Sbjct: 266 EVHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELK 325 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A V+LN LY +T +Q+ F V ++A++G +P L +L+ FVA R +VV RRT++ Sbjct: 326 RDAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRF 385 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+R H+L+GL IA+ +LDE++ +IR +P+ + AR L+ R Sbjct: 386 ELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITR--------------- 430 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 -----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKIILRLKEILASEK 479 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L+ +I EL VK RRT I+ D ED I E+MVVTVSH GYVKR P+S+ Sbjct: 480 VLMEVIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSL 539 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGG+G++G RDEDF+ +F+ STH+ +L FS G VY KV +P ARG Sbjct: 540 YRAQRRGGRGKTGAATRDEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARG 599 Query: 616 KALINILSLNQGERITTIMP---FPEDES----------------------SWNNLYVVF 650 K ++N++ L+QGE++ I+P PE YV Sbjct: 600 KPIVNLVQLSQGEKVAAILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFM 659 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT+ G +++ +L F + +G IA+ ++ DE+++ ++ +LL+T G +RF Sbjct: 660 ATRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEE 719 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 S +R GR + GV+GI+L GD V+S + A + Sbjct: 720 SDVRAM-GRTAYGVKGITLEPGDAVVSAETIPAAPPQGE--------------------- 757 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 ILTV+ G+GKRT ++R+ +R GKGI Sbjct: 758 -------------------------PAPTILTVTRNGYGKRTELAEYRVQSRGGKGIITI 792 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDE 889 ++ N G +VA V+D ++++L+++ G LIR+P I + R T+GV +I +K+E Sbjct: 793 KTTERN--GPVVAAALVSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEE 850 Query: 890 RVVSVERI 897 VV V R+ Sbjct: 851 EVVGVARV 858 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 9/141 (6%) Query: 764 LISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 +I+G+ E+ L D + + G ++ ++L +E+ ++TVS G+ KR +R Sbjct: 484 VIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLYRAQ 543 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG- 879 R G+G T + +E L ++F + + +++ SDKG + + V+EI A RA +G Sbjct: 544 RRGGRG--KTGAATRDE-DFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGK 600 Query: 880 --VVIFSTAKDERVVSVERIR 898 V + ++ E+V ++ +R Sbjct: 601 PIVNLVQLSQGEKVAAILPVR 621 >gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] Length = 914 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/916 (42%), Positives = 547/916 (59%), Gaps = 89/916 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 35 KETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNRPYRK 94 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR G+VMGKYHPHG+ AIYD + RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE Sbjct: 95 SARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMRYTEI 154 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF PNYDG+ +EP+VL ++ PN+LVNG GIAVGMATNIP H Sbjct: 155 RLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPH 214 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVVD C+ ++ +PD +D LMEII PDFPT +I G G+K+ Y TGRG +V+R Sbjct: 215 NLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAK 274 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E G R+ I+V E+PYQVNK + E++AELV EK++ I+ ++DESD+ G R+VI Sbjct: 275 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSGMRLVI 334 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG +V+LN LY+ T LQ F +NMVAL +P L ++ F+ R EVV RR Sbjct: 335 ELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLVSVFLQHRREVVTRR 394 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+D+ + IIR +P P A+ LM +SW++ +++++ Sbjct: 395 TVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQLVREMLT 454 Query: 433 LID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 D +G DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 455 RTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQDKIVAE 514 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDC 532 + + LDIL+ R+ II QEL +++ E + RR+ I D+ ED Sbjct: 515 YKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRSIIEHSAQDLCTEDL 574 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT+SH GY+K PL YRAQ+RGG+G+ +++D++ LFI +TH +L F Sbjct: 575 ITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 634 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNN 645 S+ G +Y KVW +P GS +RG+ ++N+ L GE+I ++P FP D Sbjct: 635 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRSFPADR----- 689 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV AT G V++ L +F + G IA LD D ++ ++D++L + G+ Sbjct: 690 -YVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSDGGKA 748 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 VRF + +R + R + GVRG+ L +G VI+M L+ Sbjct: 749 VRFDENDVRPLS-RQARGVRGMLLEEGQSVIAM-------------------------LV 782 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 + D + Q +LT +E G+GKRT ++ R K Sbjct: 783 AED---------------------------ETQSVLTATENGYGKRTGIVEYTRHGRGTK 815 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G+ A S N G +VA V+ +D+I+L++DKG L+R V+EIR RAT+GV + + Sbjct: 816 GMIAIQQSGRN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIAL 873 Query: 886 AKDERVVSVERIRESE 901 + ++ ++RI E++ Sbjct: 874 DEGAKLSGLQRIVEND 889 >gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] Length = 849 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/906 (41%), Positives = 561/906 (61%), Gaps = 89/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++GV + + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD N+D + +EP VL R P +L+NG GIAVGMATN+P Sbjct: 123 EARMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG A IDN DI++D L++ ++ PDFPTG +I G G++ A+ TGRG IV+R Sbjct: 183 PHNLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIYGYDGVREAFKTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G + +E+ G RE I+VTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR+G R+V Sbjct: 243 GKAVMEEVQG-RECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+LY+YT+LQS FSVN +AL +P+ L ++ FV R EVV R Sbjct: 302 YILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVHGRPQLLNLKDMIHYFVEHRHEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA +RAH+L GL IA N+DEV+ IIR S N E AR L++R Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E + + I++ DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +++SR + IIK+EL +KD+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ANKSRRMNIIKEELEVIKDKYGDERRSMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKRQNRGGVGQKGSATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ + +++ + +DE NN YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEKDDKVKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + ++L K G+ +RF R GRN+ GVRGI L Sbjct: 636 TNGINAITIKDGDELLEAKLTTGNSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGIRL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V ND Sbjct: 695 ADDNDEVVGMVAV-----------------------------------NDM--------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E IL VSE G+GKR+S D+RI+NR GKG++ V++ + G LVA+ V Sbjct: 711 --------ESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR----ESEIVD 904 D D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++R E E ++ Sbjct: 761 DEDGLMIINKSGIAIRMAVADLRVMGRATQGVRLINIKGKDSIAAVAKVRNEQQEEEAIE 820 Query: 905 EAESTE 910 AE+ E Sbjct: 821 GAENLE 826 >gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] Length = 827 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/899 (43%), Positives = 545/899 (60%), Gaps = 86/899 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + +EEKG+T V I+ EM+ +YL Y+++VI+GRA+PD+RDGLKPVHRR+LF +M N Sbjct: 3 NNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRHN 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + Y+K AR+ G+V+GKYHPHG+A++YD + RMAQD+SLR L +GQGNFGS+DGD PAA Sbjct: 63 RPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL A LL+DL K+TV F PNYD S P VL +++PN+LVNG GIAVGMAT Sbjct: 123 RYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+DGC+ +I NPD ++ LM+ I+GPDFPT VI GR GI AY GRG + Sbjct: 183 NIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIAGREGILQAYKKGRGIV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 I+ V+ I + DRE+I++TEIPYQVNKA ++E +A+LVR+K+I I+D+RDES R+G Sbjct: 243 TIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367 R+V+ LKRG +A VILN+LY+YT +Q+ F + M+AL+ +P F L G+L+AFV R + Sbjct: 302 RIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHRRD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV +R + L KA++RAH+L GL A+ +++EV++ IR S AR LM + Sbjct: 362 VVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSK------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 SE Q AILE+RL RLTGL RD I EL L +I Sbjct: 415 -------------------FEFSERQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +LS + II EL VK PRRT+I L D+EDED I E MVVTV++ G Sbjct: 456 KFVLSDVREIYKIIVSELEDVKKRYADPRRTQITGDLSDLEDEDLIADEQMVVTVTNTGL 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+ YR Q+RGGKG G+ ++ED+VTD+F ST T +L F+ G VY KV RLP Sbjct: 516 IKRIPVEEYRVQKRGGKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +G+ ++GK+L N++ L+ GE + I+P E N Y V T+ G +++ L F Sbjct: 576 LGTRTSKGKSLANVVQLSNGESVRAILPVNE---FSENKYAVMLTEKGVIKKTSLDAFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ D D ++ V+ ++DI + TK G +RF + +R GR + GV+ I Sbjct: 633 PRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVREM-GRTARGVKAI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +LAK D V++M ++ D Sbjct: 692 TLAKDDVVVAMEVLEKNTKDT--------------------------------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+ KG+GKR+ + ++RI +R G GI + +++G ++ V Sbjct: 713 ------------ILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTT--DKVGLVIGTKKV 758 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905 DN ++IL +DKG +IR+ V +I + R T+GV + + KDE V V + E E E Sbjct: 759 ADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETATE 817 >gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] Length = 858 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/900 (43%), Positives = 553/900 (61%), Gaps = 78/900 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I DE++ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 12 ILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKSYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 72 RVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K +H +L DL K+TVD+ PNYDG+ Q P V+ + PN+L+NG GIAVGMATNIP HNL Sbjct: 132 RKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG--- 252 EVV C+A+IDNPDI +D L+EII GPDFPT A+I GR GI AY TG+G I IR Sbjct: 192 NEVVTACLALIDNPDITIDELIEIIPGPDFPTAAIINGRAGIVQAYRTGKGRIYIRSRAV 251 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 V EKT D I+++E+PYQVNKA ++EKIAELV+EK+I IA+LRDESD+ G RVVI Sbjct: 252 VETNEKTGKD--TIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDESDKDGLRVVI 309 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRG +V LN LY T L+++F +N+VAL +P L +L+ FV R EVV RR Sbjct: 310 EMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQPRLLNLKQLLEYFVRHRREVVTRR 369 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI- 431 T YLL +AR+R H+L GLA+A++N+D ++ +I+ S A+ +L + W D+ ++ Sbjct: 370 TVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQGWELGDVSQMLA 429 Query: 432 ----------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DL ++ Y DG +LS Q +AIL++RL +LTGL + + E Sbjct: 430 RAGESACRPDDLPENYGYI---DGKYHLSPAQVQAILDMRLQKLTGLEHEKLLKEYQEKL 486 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI E L IL +L+ +I++EL ++ +E RR+ I+E D+ ED I ED VVT Sbjct: 487 EEIAEYLSILGDAVKLMTVIREELDAIVNEYGDERRSEIIESTRDLTAEDLITEEDRVVT 546 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +SH GY K LS Y+AQRRGG G+S ++DEDFV L I STH ++L FS++G VY Sbjct: 547 ISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILCFSNVGKVYWL 606 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P+ S ARG+ ++N+L L + ERIT+I+P E Y+ AT +G V++ + Sbjct: 607 KVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGH---YIFMATANGTVKKTE 663 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L++F + G A++L+ D ++ D++L + G+ VRF + +R GR + Sbjct: 664 LTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNENDVRAM-GRTA 722 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI +A G ++IS+ L+ D + S+ + Sbjct: 723 KGVRGIRMADGQKMISL-------------------------LVPKDGGRMLSVSENGY- 756 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 G SE + KG G + + + S R+G EI Sbjct: 757 -GKRSE------------FAEFATKGRGNKGMIF-MQASERNG------------EIIGA 790 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V VF D D+++++SD+GT++R +EI + R T+GV + + E VV VERI E E Sbjct: 791 VQVF---DGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHVVGVERIEEPE 847 >gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1] gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1] Length = 894 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/896 (41%), Positives = 561/896 (62%), Gaps = 31/896 (3%) Query: 13 EKGITSV---SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++G+ +V S T+EM++SYL+Y ++ + RA+PD+RDG+KPVHRRI+F M + ++ Sbjct: 12 DEGVAAVKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADR 71 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K+VK A++ G+VMG+YHPHG+ AIYDA+ RM Q WSLR LI+ QGNFGS+D DPPAA R Sbjct: 72 KHVKSAKVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPPAAMR 131 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A L+ DLG+ VDFRPNYD S +EPVVL AR+PN+LVNGG GIAVGMATN Sbjct: 132 YTESRLERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATN 191 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE ++ C+ + NP + LD +M ++ GPD PTG VI GR+GI+ A+ATGRG+I Sbjct: 192 IPPHHLGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFATGRGAIR 251 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308 + GV+ +E+ R +IV+ ++PY V KA +EK+AELV EK+I I+D+RDE SD+ G Sbjct: 252 VSGVASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGI 311 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367 R+VI++++ A V+LN+L T + +VNM L+ +P ++ +L FV FR E Sbjct: 312 RIVIDVRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRRE 371 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT + L K R+ H +GL A +DE+V +IR S + + AR L+ ++ S Sbjct: 372 VVRRRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTS-- 429 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + L+ + + T LS+ Q RAILE+RL+RLTGL RD I L +EI Sbjct: 430 GEFAQLLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGH 489 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLG 546 L+IL+ ++ L G++++EL +K RRT I + LD + DED + +D+VVTV+ G Sbjct: 490 LEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGG 549 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVKR L Y +++ ED V + +T T +LFF++ G + E +L Sbjct: 550 YVKRTDLPAYMGRQKAADEAV------EDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKL 603 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P +P RG+AL+N L L E + I+ P+D ++ L ++F T G +RRN SDF Sbjct: 604 PEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFA 663 Query: 667 QINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 ++N+ GK+A+KL+ + +++SV + E+D+ L ++ G C RF ++ +RV R+S Sbjct: 664 RVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDS 723 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 VGV GISL + D+VIS++++ H +A ER Y+ SA+ + +E T Sbjct: 724 VGVAGISLGRKDKVISVSVLRHFEATGTEREAYLAGGSARTK------DETTG----EPA 773 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + +R ++ EQ IL+V+E GF KRTSS+ +RI+ R G+G+ A ++ + G L Sbjct: 774 TFELPSDRMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLA--DRTGDL 831 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA+ PV + D +++ +D G R E+ I +R T+G F+ + +VSV +I Sbjct: 832 VALMPVEEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVVKI 887 >gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] Length = 834 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/901 (42%), Positives = 552/901 (61%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI I DLRDESDR G R Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFG------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L I E + Sbjct: 415 -------------------LSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P E+ ++ Y+ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V Sbjct: 692 DDNDEVIGMDVV------------------------------------------------ 703 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 QEL IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 704 DQELD-----ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ GT+IR + I R +GV + + +D+ V +V R +S+ D E Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDSDEEG 816 Query: 910 E 910 E Sbjct: 817 E 817 >gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325] gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325] Length = 814 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/897 (42%), Positives = 557/897 (62%), Gaps = 85/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R +++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVD + NYDG+ QEP VL +R PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTGA +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+I++TEIPYQVNKA ++EKIAEL R+K+I I DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQ F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINE--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +AIL++RL RLTGL RD I E L I++ D Sbjct: 413 -----------------FSLSEIQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L I+K+ELL VK++ RR+ I+EG +D +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + + +L +F+T+ G V+++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTSL--MFSTRFGIVKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T E DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D VI M +V D ++I Sbjct: 693 LSPDDYVIGMEVV-----DESKKIL----------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 TV+E G GK + S +F + NR GKG++ V+K + G +VAV V+ Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSVS 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 N+ +++++D+G +IR+ V+ I R GV + + D++V +V + EI +E Sbjct: 758 GNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814 >gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] Length = 823 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M I VE +++ Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4] gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603] gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4] gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603] Length = 823 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/890 (42%), Positives = 554/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++GE I I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M I VE +++ Sbjct: 692 ITLGDEDQVVGMEI----------------------------------------VEEDVN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++R+ +R GKG++ +++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806 >gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10] gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10] Length = 834 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/901 (42%), Positives = 552/901 (61%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI I DLRDESDR G R Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFG------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L I E + Sbjct: 415 -------------------LSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P E+ ++ Y+ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV---ENFDSDNYLFFATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V Sbjct: 692 DDNDEVIGMDVV------------------------------------------------ 703 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 QEL IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 704 DQELD-----ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + +++++ GT+IR + I R +GV + + +D+ V +V R +S+ D E Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDADEEG 816 Query: 910 E 910 E Sbjct: 817 E 817 >gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10] gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10] Length = 835 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/890 (42%), Positives = 557/890 (62%), Gaps = 87/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD+++ + +T ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ Sbjct: 2 SDQDQSR-VTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITS 60 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 61 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAA 120 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + LL D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 121 MRYTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMA 180 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG +A+ NP+I ++ LME I GPDFPTGA I+G +GI+ AY TG+GS Sbjct: 181 TNIPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGS 240 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I+IR + IE +G + I+V E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 241 IMIRSNARIEDHNG-KPWIIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTG 299 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIEL+R +A+V+LN LY+ T+LQ+ F +N +AL +P+ L L ++ + Sbjct: 300 MRIVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRV 359 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT++ L KA RAH+L GL +A+ +LDEV+ +IR S + AR LM++ Sbjct: 360 VIRRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQ------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS Q +AIL++RL RLTGL RD I NE N L I E Sbjct: 413 -------------------FDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAEL 453 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ ++L II++ELL ++D RRT I G MEDED I R+++V+TVSH GY Sbjct: 454 KAILADDEKVLEIIREELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGY 513 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S YR+Q+RGG+G G+ DEDFV LF+ ++H +LFF++ G VY+ K + +P Sbjct: 514 IKRIPVSTYRSQKRGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVP 573 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++G +IN+L + + E I+T++P E ++ N ++F TK+G +R +L F Sbjct: 574 EQKRTSKGIPIINLLQIEKDEYISTVIPISEFDA---NHSLIFMTKYGVSKRTELDAFKN 630 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I + G A+KL DE+ V ++++ TK G +RF + +R+ GR + GV+G+ Sbjct: 631 IRKGGLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLM-GRTATGVKGL 689 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+V+ M I+ D+D Sbjct: 690 RLQSEDEVVGMDII-EPDSD---------------------------------------- 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL V+E GFGKRT ++R +R GKGI+ +++ N G LV++ V Sbjct: 709 ------------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKN--GQLVSLKVV 754 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +++++ G LIR+ V++I SR T+GV + +E V +V R+ Sbjct: 755 GSDHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARV 804 >gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] Length = 815 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/888 (41%), Positives = 562/888 (63%), Gaps = 83/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I++EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ MM+ G+ +K Y K A Sbjct: 7 IIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPYRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++Y A+ +MAQD+S R LL++GQGNFGSVDGD PAA RYTE R+ Sbjct: 67 RIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYTEARM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF PN+D S +EP+VL ARYPN+LVNG GIAVGMAT+IP HNL Sbjct: 127 SKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V IDN D D+D L++ ++GPDFPT A I+G GIK AY TGRG + +R + Sbjct: 187 GEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVKVRAKAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ ++QIVVTEIPYQVNKA ++EKIA+LV+EK++ I+DLRDE++R+G R+VIELK Sbjct: 247 IEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRIVIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +A+++LN LY+++ L+ FS+ M+A+ P+ L +L ++ +++V+ RRT++ Sbjct: 307 RDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKDVITRRTQF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ N+D V+ IIR S + A+ L++ Sbjct: 367 ELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEE--------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL R+ I E L I+ IL+ Sbjct: 412 -----------FALSEIQAQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESILADEL 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LLG+IK+E+L++K + + PRRT+I+ + + +D ED+ +T++HLGY+KR+P Sbjct: 461 KLLGVIKEEMLAIKAKHEDPRRTQIIPAEGEFDVKDLFEEEDVAITLTHLGYIKRLPADT 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++Q+RGG+G + + R+EDFV +L +T++++LFF++ G VYK + +P G ++G Sbjct: 521 YKSQKRGGRGIAALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKG 580 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQINRSGKI 674 A++N+L LN GE++ + F D + N Y++ ATK+G V++ ++S+F IN+SG I Sbjct: 581 TAIVNLLQLNPGEKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNINKSGLI 640 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V +++L T+ +RF + +R GR + GV+GI+L+K D+ Sbjct: 641 AINLKDGDELIGVNMTDGNQEVVLVTENAMSIRFNEADVRPM-GRTATGVKGITLSKDDR 699 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM ++ GD + S +N ++ E R Q Sbjct: 700 VVSMNLIGE-----------------------GDNLLVVS-QNGFGKRSDVEEYRPQ--- 732 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 G G +T + I++++GK +V VN++D+++ Sbjct: 733 ---------IRGGKGIKT----YNITSKTGK---------------IVGSSLVNEDDEMM 764 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++ G LIR+ VNEI I R T GV + T ++ VVS+ +I+ +I Sbjct: 765 MINSNGVLIRIRVNEISIFGRITSGVKLMRTDEEVEVVSIAKIKAEDI 812 >gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237] gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237] Length = 844 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/900 (42%), Positives = 558/900 (62%), Gaps = 86/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV + Sbjct: 3 EGEKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ KDTVD + N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A I+N DI++D L+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ G RE I+VTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V Sbjct: 243 AKASFEEVQG-RECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +KR A +++LN LY+YT+LQS FSVN +AL +P+ + ++ FV R EVVVR Sbjct: 302 YIIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA DRAH+L GL IA N+DEV+ IIR S N + AR LM+R Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I + DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + IIK+EL VK + RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ARKERRMEIIKEELAEVKAKYGDERRSEINFAGGDLSMEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 ALSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++S+ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 SSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + DE+L + T ++I L K G+ +RF S R GRN+ GVRGI+L Sbjct: 636 QNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 AK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V N+ EE Sbjct: 695 ANDDDEVIGMVSV-----------------------------------------QNLEEE 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSEKG+GKR+S D+R++NR GKG++ +S ++ G LVA+ V+ Sbjct: 714 -----------ILVVSEKGYGKRSSIEDYRVTNRGGKGVKT--ISITDKTGGLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907 D+D +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ ++ + VDE E Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDELE 820 >gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803] gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803] Length = 843 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/902 (41%), Positives = 567/902 (62%), Gaps = 87/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG++++YD + RMAQ WS+R +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L DL K+TVD + N+D S EPVV+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+N DID+D L++ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 SH+E+ G RE +VVTEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G RVV Sbjct: 243 AKSHMEEIGG-REYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +LKR A +++LN L+++T+LQS FSVN +AL +PE L ++ FV R +VVVR Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGRPEMLNLKDLIYHFVEHRHDVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E + + I++ IL Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + +IK ELL VK++ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDERRSQIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ G R+EDF+ LF+ + H +LFF+ G Y +V+ +P GS Sbjct: 516 SLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+++++ +++ + + DE N+ +V+ ATK G V++ +L + + Sbjct: 576 ASKGRAIQNLINIDPEDKVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T + ++L + G+ +RF S R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGNSQVMLGLRSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V ++D Sbjct: 695 ADDKDEVVGMIAVNDFESD----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR+S D+RI+NR GKG++ V++ + G LVA+ V+ Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D D +++++ G +IR+ V ++R+ RAT+GV + + ++ + +V ++ E D+ +S Sbjct: 761 DIDDLMIINKSGIVIRMAVEDLRVMGRATQGVRLINLKGNDAIAAVAKVLHDE--DDLDS 818 Query: 909 TE 910 E Sbjct: 819 ME 820 >gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b] gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b] Length = 855 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/892 (42%), Positives = 559/892 (62%), Gaps = 84/892 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ + K AR Sbjct: 41 SNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSAR 100 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG++++Y A+ RMAQD+++R LI+G GNFGS+DGD AA RYTE R+ Sbjct: 101 IVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMA 160 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K LL+D+ KDT+D+R N+D S EPVVL A+ PN+L+NG GIAVGMATNIP HNLG Sbjct: 161 KITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLG 220 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EVVDG +A+IDNP+I +D L+ I+GPDFPTG +I G+ GI +AY TGRG + + G + Sbjct: 221 EVVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEV 280 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + +E I+VTE+PYQVNKA ++EKIA+LVR+K+I I+DLRDE+DR G R+VIELK+ Sbjct: 281 ETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKK 340 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G +++ILN LY++T LQ+ F V M+AL P L IL+ ++ R EV+ RRT++ Sbjct: 341 GEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRTEFE 400 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA++RAH+L G IA+ N++EV+RIIR S + AR EL+ + Sbjct: 401 LKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAK---------------- 444 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 SE+Q +AIL++RL RLTGL RD I E N L + I+E ILS S+ Sbjct: 445 ----------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSK 494 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 + GIIK+E L +K++ RRT I ++ ED I E++VVT++ GYVKRV + Y Sbjct: 495 IYGIIKEEGLKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTY 554 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+Q+RGG G + ++D V D++I ++L F++ G V+ KV+ +P QARGK Sbjct: 555 RSQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGK 614 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + NI++L+ E+++TI+ E E + N + F T++G V++++L+ F I ++GK A+ Sbjct: 615 LIGNIINLDDDEKVSTIIKVREFEKNKN---LFFVTRNGVVKKSELTLFDNIKKAGKRAI 671 Query: 677 KLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 +L+ DE++ + + + E++I TK G +RF +R G + GVRGI+L D+ Sbjct: 672 RLNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSM-GTGAAGVRGINLRDEDK 730 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ AI+ E+ Sbjct: 731 IVGAAII------------------------------------------------SSEMN 742 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853 + ILT++E+G+GKRT ++R+++R GKGI +K+NE G +V V V D+D+I Sbjct: 743 KDDARILTITEEGYGKRTKLLEYRLTSRGGKGIIN---AKLNEKTGKIVDVKIVKDDDEI 799 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +L++ +GTLIR V ++ + R+ GV I +E++ S+ +I E +D+ Sbjct: 800 MLITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEEPKLDD 851 >gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] Length = 830 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ + I +EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EEDVPRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ ++YDA+ RMAQD+S R +L+ G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + L+ DL KDTVDF NYDG+ +EP V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NPDI + LME I GPDFPTG ILGR+GI+ AY+TGRGSI Sbjct: 183 IPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + I + G ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I +LRD SDR G Sbjct: 243 VRAKTEIVENKG-KQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMN 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R A+ +VILN L++ T+LQ+ F +NM+AL +PE L L+ ++A + EV+ Sbjct: 302 IVIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA RAH+L GL IA+ ++DE++ +IR S E AR L++R Sbjct: 362 RRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD + E + I E Sbjct: 413 -----------------FELSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +++ +I++E+L++K++ + RRT I +EDED I R+++V+T++H GY+K Sbjct: 456 ILASDEKVIDVIQEEILAIKEKFNDERRTVISASEEHLEDEDLIPRQNIVITITHNGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YRAQ+RGGKG G+ D+DFV LF +TH +VL F++ G Y+ K + +P Sbjct: 516 RLPISTYRAQKRGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G IN+L + GE I+T++P E ++ Y+ F T+HG +R KLS F I Sbjct: 576 GRTAKGIPAINLLPFDPGETISTVIPI---ECFDDDSYLFFVTEHGIAKRTKLSAFANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G A+ L D + V ++++ TK G +RFP + +R+ GR + GV+GI+L Sbjct: 633 KGGLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLM-GRTAGGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 ++ D V+ M +V DE Sbjct: 692 SENDGVVGMEVV-------DE--------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+EKG+GKRT ++R+ +R GKGI+ +++ N G LV++ V D Sbjct: 706 -------NQSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKN--GPLVSLKMVAD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D I++V+ G +IR V+ I R T+GV + + E V +V R+ Sbjct: 757 EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARV 804 >gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] Length = 849 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/893 (42%), Positives = 554/893 (62%), Gaps = 86/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL+ M +G+ +K + K A Sbjct: 11 IKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIVADKPHKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+ + RMAQD+S R L++G GNFGSVDGD AA RYTE R+ Sbjct: 71 RIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDTVD+ NYDG EPVVL R+PN+LVNG GIAVGMATNIP HNL Sbjct: 131 SKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGMATNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 GE +D AV+DNPDI + LME I GPDFPTG ILGR GIK AY TGRGSI+IR Sbjct: 191 GETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETGRGSIMIRSKV 250 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E ++QI+VTEIPY VNKAA++EKIA LVREK I I DLRDES+ +G R+VIEL Sbjct: 251 KVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESNMEGIRIVIEL 310 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ +DVILNQLYR TSLQ+ F VNM+ L P++ L +LK ++ + +V VRRT+ Sbjct: 311 RKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDHQIDVTVRRTR 370 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA DRAH+L GL IA+ ++D ++ +IR S + A LM+ Sbjct: 371 FELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLME--------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q +AIL+++ RLTGL R I E +SL +I + DIL++ Sbjct: 416 -----------NFGLSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNH 464 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 SR+L II+ EL +K++ + RR+ I++ +DM+DED I +ED+V+T++ GYVKR+P+ Sbjct: 465 SRVLEIIRSELTEIKEKYNDKRRSEIIDAEIDMQDEDLIPQEDVVITMTVNGYVKRIPVD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG G+ M ++D V + TH +L F++ G VY+ K +++P+ S ++ Sbjct: 525 TYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSK 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L+L++ E++ ++P + S L+ F T G V+R + +F I +SGKI Sbjct: 585 GIPIVNLLNLDKDEKVLAMVPVERENSPAKFLF--FVTAQGIVKRVPIEEFENIRQSGKI 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++S + T + IL+ GQ +RF + +R GR + GV+G ++ G + Sbjct: 643 AINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPM-GRTATGVKGFNV-NGSR 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M + EG Sbjct: 701 VIGMT---------------------------------------TDFEG----------- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 Q+IL+V+EKG+GK++ D+R++NR GKG++ V+ N G LV + VN ++ + Sbjct: 711 ---QYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKN--GPLVFLRAVNGDEDCL 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +++++G +IR+ + ++ + SR T+GV + S ++ V +V + +SE +E E Sbjct: 766 IMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDDEETE 818 >gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341] gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341] Length = 815 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/897 (42%), Positives = 557/897 (62%), Gaps = 85/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTG+ +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+IV+TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ + Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E+Q +AIL++RL RLTGL RD I E + L I + D Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K ELL VK++ RR+ I+EG +D +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + + +L +F+TK+G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTSL--IFSTKYGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V D ++I Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 TV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 N+ +++++D+G +IR+ V+ I R GV + + D++V +V + EI +E Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814 >gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303] gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303] Length = 830 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/886 (41%), Positives = 553/886 (62%), Gaps = 83/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V I +EM+ SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + G+ ++K Y K A Sbjct: 26 ISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEAGITYDKPYKKSA 85 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GK+HPHG+ A+YD+L RM Q++S+R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 86 RVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGDSAAAMRYTEVRM 145 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K + +L D+ K+TV F+PNYDG+ EP VL A+ PN++VNG GIAVGMATNIP HNL Sbjct: 146 EKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIAVGMATNIPPHNL 205 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV DG + +IDNPD+ + L I+GPDFPT ILG GIK+AY TGRG I IR V+ Sbjct: 206 KEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGTEGIKSAYETGRGRIKIRSVAD 265 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ D+ +IVV+E+PYQVNKA ++E IA LVR+K+I I+DLRDESDR+G R+VIEL Sbjct: 266 IEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDESDREGIRIVIELA 325 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + +VILNQLY++T LQ + + +AL P+ L +L+ ++ R +V+ +R++Y Sbjct: 326 RNTNPNVILNQLYKHTQLQVTYGIINLALVDGVPKVLNLYELLQIYLNHRMDVIQKRSQY 385 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL I + NLDEV+ IR S A+ L+++ Sbjct: 386 QLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEK--------------- 430 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E Q +AIL++RL LT + +D I +E N L +I + +I++S S Sbjct: 431 -----------FQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDS 479 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R IIK EL +K+ RRT I ++ +ED I ED+++T+++ GY+KR+P++ Sbjct: 480 RKYNIIKDELTELKENYADERRTDIQSSDEELSEEDLIPEEDVLITITNSGYIKRLPVTT 539 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGG+G +G+ ++D+DFV D+F+ ST +L F++ G V +KV+ +P GS Q+RG Sbjct: 540 YSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQGSKQSRG 599 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N+ L E +++++ E WN ++ ATK+G V++ LS F +SG IA Sbjct: 600 KALVNLFELENDEAVSSMITVKEFSDDWN---LLMATKYGTVKKTPLSSFKTRKKSGLIA 656 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ DE+++V +NDI+L + G+ +RF + +R GR + GVRGI L D++ Sbjct: 657 INLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPM-GRAAQGVRGIRLNPDDRI 715 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ISM DT IS++ +L Sbjct: 716 ISM-----------------------------DT---------------ISDDENAKL-- 729 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 LT+++ G+GKRT ++R NR G+G+ ++ N G +V V V D+D I++ Sbjct: 730 -----LTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRN--GPVVNVKTVRDDDDIVV 782 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 S +G +IR+PV +IR+ R T+GV I + ++++V+ V RI++ + Sbjct: 783 TSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDD 828 >gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] Length = 909 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/909 (43%), Positives = 556/909 (61%), Gaps = 49/909 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K H LL DL KDTVD+ NYDGS + P VL R PN+L+NG GIAVGMATN+ H+L Sbjct: 126 TKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 NEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+VI+N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+D+++ I+ S NP AR L W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G +Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+G+I++EL + + RRT+IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ +P S A+G+ ++N+L L+ E IT I+P E N YV AT G V+R + Sbjct: 606 KVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTE---FLENHYVFMATASGTVKRVE 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F I +G A++L+ D ++ V + I+L + G+ +RF + +R GR + Sbjct: 663 LEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVRAM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ + V S L D+DE D+EE T DSSV Sbjct: 722 KGVRGMRVTLAAAVDSEDTEL----DHDEL---------------DDSEEST----DSSV 758 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +S + + +L S G+GKRT DF R GKG+ A S+ N G L Sbjct: 759 ---VSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 813 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVERIR 898 V ++ +++L+SD GTL+R E+ + R +GV + + E VVS+E + Sbjct: 814 VGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEAVE 873 Query: 899 ESEIVDEAE 907 + E ++ E Sbjct: 874 DDEFIEVVE 882 >gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501] gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501] Length = 848 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/889 (42%), Positives = 552/889 (62%), Gaps = 85/889 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + R+AQDWS+R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ K+TVD + N+D S +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A ID+ DI ++ LM+ I+ PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIYGYDGVKEAFETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ G RE IVVTEIPYQVNKA M++K +L+ EK+I IA +RDES+R+G R+V Sbjct: 243 AKATFEEVQG-RECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN LY+Y++LQS FSVN +AL G +PE L ++ FV R +VVVR Sbjct: 302 YVLKRDAIPNIVLNMLYKYSALQSSFSVNNIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L KA +RAH+L GL IA N+DEV+ IIR S N E AR L++R Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSEVQ RAI+E+RL +LTGL +D +R+E + I++ DIL Sbjct: 411 ---------------FELSEVQARAIVEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK EL V+D+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 AREERRMEIIKDELREVRDKYGDDRRSEINYAGGDLSIEDMIPDEQVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G Y +V+ +P GS Sbjct: 516 PLTEYKTQHRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +++ + + DE N+ +V+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ + DE+L T + I L K G+ +RF S R GR++ GVRGI+L Sbjct: 636 QNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPM-GRSASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V D+DE Sbjct: 695 ADDNDEVIGMVSV----HDFDED------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 IL VSE G+GKR+S D+RI+NR GKG++ +SK + G LVA+ V+ Sbjct: 714 -----------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISK--KTGGLVAIKNVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D+D +++++ G IR+ V ++R RAT+GV + + ++ + +V ++ Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVAKV 809 >gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88] gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88] Length = 813 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/892 (40%), Positives = 558/892 (62%), Gaps = 92/892 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 8 EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGLSPEKSYR 67 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 68 KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 127 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K +L D+ K+TVDF PN+DGS +EP V+ +R+PN+LVNG GIAVGMATNIP Sbjct: 128 AKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVGMATNIPP 187 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG +I++PD + LM I+GPDFPT +I+G++GI++AY TGRG +++R Sbjct: 188 HNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGRGKVIMRA 247 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G R +I+VTE+PYQVNKA ++E +AELV++KRI I+D+RDESDR+G R+V+ Sbjct: 248 KAEIEEEKG-RYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDREGMRIVV 306 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KR ++ +V+LNQLY++T +Q F V M+AL +P+ L IL ++ F++E++ RR Sbjct: 307 EIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQKEIIRRR 366 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH+L GL IA+ ++DEV+ +IR S N + AR LM + Sbjct: 367 TKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK------------ 414 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL++RL RLTGL RD I E N L IK DIL+ Sbjct: 415 --------------FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILN 460 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + +L IIK+EL +K++ R+T I + ++ ED I E++VVT+++ GY+KR+ Sbjct: 461 NEDLVLKIIKEELHEIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNSGYIKRIS 520 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y +Q+RGGKG + +++DFV +FI STH+ +LFF+++G VYK K + +P Sbjct: 521 SDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRT 580 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N+L ++ E + ++ +D Y++ TK G +++ L+ F I ++G Sbjct: 581 AKGTNIVNLLPVDANEHVREVIALKKDLEEG---YLIIGTKQGLIKKTSLNQFKNIRKNG 637 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L V+ + +I++ T+ G +RF +R GRNS GV+ ISL K Sbjct: 638 IIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPM-GRNSTGVKAISLRKD 696 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D +SM IV Sbjct: 697 DVAVSMDIV--------------------------------------------------- 705 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVND 849 ++++++LTV+E GFGKRT + ++ + NR+GKG+ R TD + G +V+ D Sbjct: 706 --VEDEYVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVTD-----KTGKIVSARVAKD 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +D+++L++ T IR+ V+++ I +R+ GV + T ++E+++++ +I E Sbjct: 759 SDELMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDE 810 >gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] Length = 935 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/933 (42%), Positives = 559/933 (59%), Gaps = 108/933 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF NYDG+ + P V+ R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDGC+A+ID+ + D LME I+GPDFPT +I GR GI AY TGRG + +R + Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARAE 247 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE T +E I+VTEIPYQVNKA ++EKIAELV++K+I I +LRDESD++G RVVIEL Sbjct: 248 IEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +RG +A+V+LN LY+ T ++S+F +N VAL +P+ L +L AF+ R EVV RRT Sbjct: 308 RRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRTV 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR++AH+L GLA+A++N+D V+ +I+ SP+ A+ +L+ + W D+ +++ Sbjct: 368 FELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLERA 427 Query: 435 D----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D Y + DG +LS Q +AIL+LRL +LTGL R+ + N+ L +I Sbjct: 428 GGENAARPDGLDEQYGL-VDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL + RL+ +I++EL +V++E RR+ IV D ED I E +VVT+S+ Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K P+ YRAQ+RGG+G+S ++DED+V L + TH ++L F+ G V+ + + Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDAGKVFWLRTF 606 Query: 605 RLPIGSPQARGKALINIL-SLNQGERITTIMPF------------PEDE----------- 640 LP G +RGK ++N+L +L ERIT I+ E+E Sbjct: 607 ELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVIDAV 666 Query: 641 ----------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 + ++ AT G V+R L++F + SG IA+KL + + Sbjct: 667 DDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHL 726 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 ++V DI+L + G+ VRF S +RV + R + GVRGI LA+G +IS+ Sbjct: 727 VNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDLISLI----- 780 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + EE Q ILT S Sbjct: 781 ----------------------------------------VPEENGQ--------ILTAS 792 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 E G+GKRT D+ R G+G+ A +++ N G LV V + I+L+S++GTL+R Sbjct: 793 EHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLVR 850 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VN++ + R T+GV + A E + + I Sbjct: 851 TGVNQVSTSGRNTQGVRLIRLADGEALCGLATI 883 >gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] Length = 904 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 549/893 (61%), Gaps = 45/893 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+VI+N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L+ W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 ++ G ++Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL V + RRT I+E +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+ +DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +V+ +P S A+G+ +IN+L L+ E +T I+P E N YV AT G V+R Sbjct: 606 RVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTE---FLENHYVFMATASGTVKRVD 662 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F I +G A++L+ D ++ V I+L + G+ +RF + +R GR + Sbjct: 663 LEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GRTA 721 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ ++ +S A+ + DE S D E+ L S + Sbjct: 722 KGVRGMRVSIASNTLSEE---DAEIENDE---------------SDDNEDSAELSVVSRI 763 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + E +L S G+GKRT DF R GKG+ A S+ N G L Sbjct: 764 VSLVVVPETGE-------VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GEL 814 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V ++++ +++L+SD GTL+R E+ + R +GV + +++E +V V Sbjct: 815 VGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 867 >gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21] gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21] Length = 862 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/890 (41%), Positives = 554/890 (62%), Gaps = 84/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM+ +GV K Y K A Sbjct: 18 IIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGVTSGKPYKKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++YD + RMAQ+WSLR L++GQGNFGS+DGD PAA RYTE RL Sbjct: 78 RIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFGSIDGDSPAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A +L D+ KDT+D++ N+D S QEP VL + PN+LVNG GIAVGMATN+ HNL Sbjct: 138 KRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNGASGIAVGMATNMAPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG VA IDN DI + LM+ I+ PDFPTG VI G G+++A+ TGRG +V+R + Sbjct: 198 SEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIYGYAGVQDAFETGRGRVVMRAKAE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + D+E I+VTEIPYQVNKA M+++ A+LV EK+I I+ +RDESDR G R+V ++K Sbjct: 258 IEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISAIRDESDRDGMRIVYDIK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A ++LN L++YT+LQ+ FSVN +AL +P L ++ FV R EV++RRTK+ Sbjct: 318 RDANASIVLNNLFKYTALQTSFSVNNIALVHGRPMLLNLKDMIHHFVEHRHEVIIRRTKF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A RAH+L GL IA+ +LDEV+++IR S PE AR LM++ Sbjct: 378 ELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLMEK--------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q RAIL++ L RLTGL RD I+ E L I+ +L+ Sbjct: 423 -----------FGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEG 471 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK ELL VK++ RR++IV DM ED I E++V+T+SH GYVKR PL+ Sbjct: 472 LRMKIIKDELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEIVITISHEGYVKRTPLTE 531 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG G ++EDF + S H +LFF+ G + + + +P G+ +RG Sbjct: 532 YRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTSRG 591 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ NI+++ + E+I + +D+ N +++ TK G +++ L + + +G Sbjct: 592 RAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGTIKKTSLEAYSRPRANGI 651 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ ++ D++L ++I++ K G+ +RF S +R GR + GVRG++LA Sbjct: 652 NAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPM-GRTATGVRGVTLAGPD 710 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M IS +T + T Sbjct: 711 DEVVGM--------------------------ISVNTNDAT------------------- 725 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 IL VSEKG+GKRT D+R++NR GKG++ +V++ + G LVA+ V DND Sbjct: 726 -------ILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTE--KTGLLVAIKDVTDNDD 776 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 +++++ G +IR+ V+++R+ RAT+GV + + +++++ S+ ++ E+ Sbjct: 777 LMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKENDQIASITKVDHDEV 826 >gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] Length = 808 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/886 (42%), Positives = 545/886 (61%), Gaps = 85/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ ++ + K A Sbjct: 8 VIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ KYHPHG+ A+YDAL R+AQD++ R L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 YIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ K+TV+F PNYDG EP VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 128 ARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +IDNPD ++ LM +I+GPDFPTG I+GR GI +AY TGRGSI +R + Sbjct: 188 GEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSIKVRAQAS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK G R IVV+EIPYQVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIEL+ Sbjct: 248 IEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIELR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LNQLY++T +Q F V M+AL +P L +L ++ +++VVVRRT++ Sbjct: 308 RDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQKDVVVRRTRF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LN+A RAH++ GL IA+A+LDEV++ IR S PE AR+ LM++ Sbjct: 368 ELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEK--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E Q AI+E+RL +LTGL R+ + E L +I +L Sbjct: 413 -----------FGLTEKQAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDER 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++LGIIK ELL+VK + PRRT I E+ED I ED+V+T++ GY+KR+PL Sbjct: 462 KVLGIIKDELLAVKKKFADPRRTAITSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGG+G + + ++EDFV LFI +TH LFF++ G VY+ KV +P QA+G Sbjct: 522 YRSQRRGGRGVTAMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N+L + E+ITT++P E + + Y+ ATK G V++ L+++ R G IA Sbjct: 582 TAIVNLLYIGSEEKITTVIPVREFDPAQ---YLFMATKRGIVKKTPLNEYDTSRRDGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V+ +I+L T+ G +RF +R GR + GV+GI+L D+V Sbjct: 639 ISLNEGDHLVDVKLTGGREEIILATRGGLAIRFLEEEVRP-TGRVTQGVKGINLVGDDEV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + M + A DE Sbjct: 698 VGMEV-----ARPDE--------------------------------------------- 707 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 F+L+V+ GFGKRT ++R R GKGI + N G LVA+ V +++++ Sbjct: 708 ---FLLSVTANGFGKRTRLSEYRAQARGGKGIINIKTTARN--GPLVAIQAVKGEEEVMM 762 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +S +G +IR+ +I + RAT+GV + + + +V+ ++ E Sbjct: 763 ISAEGIIIRLKAQDIPVMGRATQGVTLMRLDRGDSLVAAAKVETEE 808 Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q++ +++G K+T ++ S R G +NE LV V ++IIL + Sbjct: 609 QYLFMATKRGIVKKTPLNEYDTSRRDG-----IIAISLNEGDHLVDVKLTGGREEIILAT 663 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 G IR E+R R T+GV + D+ VV +E R E + Sbjct: 664 RGGLAIRFLEEEVRPTGRVTQGVKGINLVGDDEVVGMEVARPDEFL 709 >gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] Length = 812 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/882 (41%), Positives = 549/882 (62%), Gaps = 85/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G +K Y K A Sbjct: 8 VVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G+VMG+YHPHG++AIYDA R+AQD+S R +LI+G GNFGS+DGDP AA RYTE R+ Sbjct: 68 GLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++L D+ K+TVDF+PNYD +EP VL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 128 AKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D + +I+NP ++ LM +++GPDFPTGA+I+GR GI+ AY TGRGSI++R + Sbjct: 188 AEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAKAR 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK +G++ +I+V EIPYQVNK+ +LE+IAELVR+KR+ I DLRDESDR+G ++VIEL+ Sbjct: 248 IEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIELR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ++LNQL++YT +Q F V M+AL P+ L +L ++ +++V+VRRT+Y Sbjct: 308 RDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVRRTRY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ N+D ++ IIR S + + AR LM Sbjct: 368 DLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILM----------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G LSE Q +AIL++RL RL GL R+ I NE L I +L S Sbjct: 411 ---------GEFNLSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEK 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L IIK+E+ +K++ PRRT I D++ ED I ED V+T++H GY+KR+P++ Sbjct: 462 MVLDIIKKEISEIKEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQRRGG+G +G+ +++DFV LF+ +TH ++LFF+ G VY+ K +P S A+G Sbjct: 522 YKAQRRGGRGVTGMGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N+L++ E++ ++P E + Y+ AT+ G V++ L + + + G IA Sbjct: 582 TAIVNLLAITGDEKVNAVIPVKEFAADQ---YLFTATRSGIVKKTSLQHYDTVRKEGLIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++ V+ ++DILL T+ G VRF + +R GR + GV+GI L +GD V Sbjct: 639 LTLDEGDELIGVKLTDGKSDILLATRNGMAVRFNETNVREM-GRTARGVKGIELTQGDFV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ L A D DE Sbjct: 698 VA----LDAVKDDDE--------------------------------------------- 708 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L ++E G GKRT ++R NR GKGI A ++ N+ G + + V D++++ Sbjct: 709 ----LLMITELGMGKRTPLSEYRKQNRGGKGILAMRLT--NKTGLMAGIKVVRPGDELMV 762 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +S +G +IR+ V+EI + SR T+GV I +++VV++ R+ Sbjct: 763 ISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARV 804 Score = 45.1 bits (105), Expect = 0.057, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EITS D VE I+EE ++T++ G+ KR ++ R G+G+ Sbjct: 485 EITSSGADIDVEDLIAEEDA---------VITITHNGYIKRLPVNTYKAQRRGGRGVTGM 535 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAK 887 + + + L F + ++ +D+G + R+ +EI ASR KG I + Sbjct: 536 GTKEDDFVEHL---FVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAKGTAIVNLLAITG 592 Query: 888 DERVVSVERIRE 899 DE+V +V ++E Sbjct: 593 DEKVNAVIPVKE 604 >gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1] gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1] Length = 839 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/889 (41%), Positives = 552/889 (62%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+YD + RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + ++ D+ KDT+D+R NYDGS +EP+V+ +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ +P+I + LM+ I GPDFPT +I+GR+GI+ AY +G+GSI Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE + +E I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 MRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL +P+ L L ++ ++ V+ Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ +IR S + AR LM+ Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL RLTGL RD I NE L I E Sbjct: 413 ----------------NFSLSEKQAQAILDMRLQRLTGLERDKIENEYQELVKLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL +K+ + RRT IV G ++ +EDED I RE++++T++H GY+ Sbjct: 457 ILADEEKVLEIIREELNEIKERFNDERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+S YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G +K K + +P Sbjct: 517 KRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S A+G +IN+L +++GE + ++ E W Y+ F TK G +R +SDF I Sbjct: 577 FSRTAKGIPIINMLGVDKGEWVNAMIRIEEFVDDW---YLFFTTKQGISKRTPVSDFANI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++SV+ DI++ T+ G +RFP + +R GR + GV+GI+ Sbjct: 634 RTNGLIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSM-GRTATGVKGIN 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V+ M EI K+D Sbjct: 693 LDSEDIVVGM--------------------------------EILEEKDD---------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V+EKGFGKRT + ++RI R GKG++ +++ N G L++V V Sbjct: 711 -----------VLVVTEKGFGKRTPAEEYRIQTRGGKGLKTCNITDRN--GELISVKAVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR+ VN+I I R T+GV + ++ V +V ++ Sbjct: 758 GEEDLMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806 >gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] Length = 894 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/892 (43%), Positives = 554/892 (62%), Gaps = 84/892 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG + + NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRARAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIPYQVNKA M+EKIAELVR+K++ I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDI 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A+VILN LY+ T LQ+ F NM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I G +D +EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N Y++FATK+G V+R+ LS+F IN++GK Sbjct: 583 KGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSHINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + DIL+ T +RF +++R GR + GV+GI+L +GD Sbjct: 641 IAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + V H+++ Sbjct: 700 TVVGLD-VAHSES----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++V++ G +IR+ V +I RA +GV + ++ V +V +++ DE Sbjct: 767 MIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDE 818 >gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] Length = 815 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/886 (42%), Positives = 552/886 (62%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +G+ ++K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG++A Y + R+AQD++ R L++GQGNFGS+DGD AA R Sbjct: 62 PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG +A+ DN +I + LM I+GPDFPTG+ +LGR+GI AY TGRGS++ Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+I++TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L +L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S E A+ L+ + Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E+Q +AIL++RL RLTGL RD I E + L I + D Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K ELL VK++ RR+ I+EG +D +E+ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED V + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + + NL +F+TK+G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEGTNL--IFSTKYGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V D ++I Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 TV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ +++++D+G +IR+ V+ I R GV + + D++V +V Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATV 803 Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 ++ T++G + +K ++F INR GK +A +I++V++ D+++ T G Sbjct: 711 ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVAVKSIAGNEDLMIMTDQGI 770 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 +R +S I GR + GV+ I+L +V ++ + ++ DE Sbjct: 771 IIRIDVSTISTL-GRTATGVKVINLVDDQKVATVTLAAKEESYEDE 815 >gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] Length = 894 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/892 (43%), Positives = 554/892 (62%), Gaps = 84/892 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 9 INERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 TKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG + + NPDI + LME I+GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 189 TEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMRARAE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIPYQVNKA M+EKIAELVR+K++ I DLRDE+ R G RVVI++ Sbjct: 249 IEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDI 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A+VILN LY+ T LQ+ F NM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 309 RKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVRRRTE 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L +R Sbjct: 369 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 415 ------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +++ EL +K+ RRT I G +D +EDED I E +V+T+SH Y+KR+P+ Sbjct: 463 EVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIKRLPV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + +P S Q+ Sbjct: 523 STYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQS 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++N + L E I+T++ + ES N Y++FATK+G V+R+ LS+F IN++GK Sbjct: 583 KGIPVVNAIELANDESISTMIAVNDLESEGN--YLIFATKNGIVKRSALSNFSHINKNGK 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ DE+++V + DIL+ T +RF +++R GR + GV+GI+L +GD Sbjct: 641 IAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITLREGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+ + V H+++ Sbjct: 700 TVVGLD-VAHSES----------------------------------------------- 711 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +L V+E G+GKRT ++R+SNR GKGI+ +++ N G +V + V + + Sbjct: 712 ---EDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTGEEDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++V++ G +IR+ V +I RA +GV + ++ V +V +++ DE Sbjct: 767 MIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDE 818 >gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65] gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65] Length = 868 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/904 (43%), Positives = 551/904 (60%), Gaps = 75/904 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L M + +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +++R L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH +L D+ K+TV+F NYDG+ Q P VL R P++LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+A+I+NP+ID+D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAALINGRDGIVDAYRTGRGRIQMRAR 245 Query: 254 SHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 H E + +E I+ TEIPYQVNKA ++EKIAELV++K+I I +LRDESD+ G R+V+ Sbjct: 246 HHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVV 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+RG +V+LN L+ T LQ++F +N VAL +P+ L +L+AFV R EVV RR Sbjct: 306 ELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQPKILNLKDMLEAFVRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T Y L KAR+R H+L GLA+A+AN+D V+ I+ SP A+ +L+ +W D+ ++++ Sbjct: 366 TIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DD G DG YLS Q +AIL++RL +LTGL D + +E EI Sbjct: 426 RAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E L IL+S RL+ +I++EL S+KDE R T IVE + ED I EDMVVT+SH Sbjct: 486 AEYLQILASHERLMEVIREELESIKDEYGDGRLTEIVETRRHLTMEDLIAEEDMVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K P++ Y+AQRRGG+G+S ++DEDF+ L + +TH ++L FS+ G VY KV+ Sbjct: 546 GGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVYWLKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P+ S Q+RG+ ++N+L L Q E ITTI+P E Y+ AT G V++ L+ Sbjct: 606 DIPVASRQSRGRPIVNLLPLEQDEWITTILPVRE---YTEGHYIFMATSKGTVKKTDLTA 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + SG IA++L+ D ++ E D+LL + +G+ VRF S +R GR + GV Sbjct: 663 FSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAM-GRTARGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI + +V+S+ I E T L +S G Sbjct: 722 RGIKMQDDQKVVSLMI---------------------------PKEGATVLT--ASEHGY 752 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVA 843 E K G+ T ++N R+GK + A V NE Sbjct: 753 GKRTDVDEFPTK------------GRGTQGVIGMVTNDRNGKLVGAVQVFDGNE------ 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I+L++++GTL+R V+E+ R T+GV + + ER+V + + I+ Sbjct: 795 ---------IMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGERLVGI-----APIM 840 Query: 904 DEAE 907 DE E Sbjct: 841 DEDE 844 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 28/247 (11%) Query: 517 RTRIVEGLLDMEDEDCI-----VRE----DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 R R + LL +E ++ I VRE + + G VK+ L+ + R G Sbjct: 615 RGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKGTVKKTDLTAFSRPR--SSGLI 672 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLN 625 + + + D + I + VL S +G K R + +A G+ + + + Sbjct: 673 ALELEEGDTLMGAEITDGNQDVLLMSDVG-----KAVRFAESNVRAMGRTARGVRGIKMQ 727 Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRD- 682 +++ ++M P++ ++ V+ A++HG +R + +F R G I M + R+ Sbjct: 728 DDQKVVSLM-IPKEGAT-----VLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRNG 781 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +++ N+I+L T G VR +S + GRN+ GV I + +G++++ +A ++ Sbjct: 782 KLVGAVQVFDGNEIMLITNQGTLVRTRVSEVSTL-GRNTQGVTLIRVQEGERLVGIAPIM 840 Query: 743 HADADYD 749 D D D Sbjct: 841 DEDEDMD 847 >gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98] Length = 821 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/890 (42%), Positives = 553/890 (62%), Gaps = 86/890 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE ++ K + LL D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NP+I + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R IE+ + R+ I+VTEIPYQVNKA ++EKIAELVR+K+I I DLRDESDR+G Sbjct: 242 ITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 LRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ L++R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FALSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +L+F++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G +IN+L +++ E + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIINLLEVDKDEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L + D V+ M I VE N++ Sbjct: 692 ITLDEDDHVVGMEI----------------------------------------VEENMN 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L V++ G+GKRT ++RI +R GKG++ ++++ N G LVAV Sbjct: 712 -------------VLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V + I+L++ G +IR+PV +I R T+GV + D+ V +V + Sbjct: 757 VTGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVAK 806 Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 13/140 (9%) Query: 770 EEITSLKNDSSVE-------GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 EE+T +K + E G I ++L ++ +T++ G+ KR + ++ NR Sbjct: 471 EELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNR 530 Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+G++ N+ + + + +D I+ ++KG + R EI SR KG+ I Sbjct: 531 GGRGVQGMGT---NDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEIPEYSRTAKGIPI 587 Query: 883 FS---TAKDERVVSVERIRE 899 + KDE V ++ IRE Sbjct: 588 INLLEVDKDEWVNAIIPIRE 607 >gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.] Length = 808 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/891 (40%), Positives = 555/891 (62%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + ++ ++I EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +WNK Y Sbjct: 3 ETEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGDPPAA RYT Sbjct: 63 KKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL + A +++DL K+TVD PNYD S EP +L A+ P +L+NG GIAVGMAT+IP Sbjct: 123 EIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV + +IDNPDI + L++I+ GPDFPT +I GR+GI +AY+TGRG + +R Sbjct: 183 PHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGIIHGRSGIYDAYSTGRGKVKVR 242 Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E ++ E IVVTE+PY VNKA ++EKIAEL+R+K+I + +RDESDR+G R+ Sbjct: 243 ARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 + LK+ + +I+N LY++T ++S F + +A+ +PE TL IL+ FV R+++++ Sbjct: 303 ALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNNRPEVLTLKQILEYFVLHRKDIII 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RTK+ L KA RAH+L GL +A+ N+DEV+ +I+ S +P A++ L+ R Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISR---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ +Q +A+L++RL RLTGL R+ I E ++L +I +I Sbjct: 413 ----------------FDMTPIQAQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S + +L IIK EL +K+E RRT I++ ++ ED IV EDMVVTVS GY+KR Sbjct: 457 LASETLVLNIIKDELTQIKNEYGDLRRTEIIDETENISIEDLIVEEDMVVTVSKDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P S+Y +Q RGGKG++ ++ ++EDFV+ LF+ STH LFF++ G VY KV+ +P Sbjct: 517 TPASIYNSQSRGGKGKTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAG 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GKA++N+L+ +GE++TT++ + E +V+ AT+ G ++R + + + Sbjct: 577 RTSKGKAIVNLLNFAEGEKLTTVLAVKDFEPGS---FVIMATRSGQIKRTDIMAYSRPRA 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+KLD DE+++V ++ + + +G+ +RF S IR GR + G+RG+ LA Sbjct: 634 GGIKALKLDEGDELIAVRITDGTLNVFVCSAMGKSIRFHESDIRA-TGRVTGGIRGMRLA 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 KGD+++ M ++ H Sbjct: 693 KGDRIVGMEVLTHG---------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q + V+E GFGKRTS ++ + R GKG+ S+ N G +VA+ V+++ Sbjct: 707 -------QTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERN--GQVVAILIVDED 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D ++L++D G +IR P++ I + SR T+GV + + E+V+ R+ E + Sbjct: 758 DDLMLMADSGKIIRTPISGISVISRNTQGVKLINREATEKVIGAARLAEKD 808 >gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] Length = 828 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/902 (41%), Positives = 555/902 (61%), Gaps = 92/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E+++ V +ID+ + ++ +++II+GPDFPTG +ILG GI+ AY TGRG I + Sbjct: 189 NEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+VTE+PY VNKA ++EKIAE+VR+K+I I DL D+S R+G RV Sbjct: 249 RAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQSSREGMRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ +A+V+LNQLY++T LQ F V M+AL +P ++ +L ++ +EEVV Sbjct: 309 VIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNEPRVMNILDMLNYYLQHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S + A+ ELM+R Sbjct: 369 RRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ++AI+++RL LTGL R+ + NE L +I+E I Sbjct: 421 ------------------LSEVQSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L ++D+ RRT I D+ ED I +ED+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEILIIRDKYGDERRTSIGFDEFDISMEDLIPKEDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ ED+V +LF+ TH ++FF++ G VY+ K + +P S Sbjct: 523 MSHDTFKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A++N+L L GE+I+ ++P E + Y+ ATK G V++ ++++ + + Sbjct: 583 RTSRGTAIVNLLQLMPGEKISAVIPI---EEYKDGEYLFMATKKGLVKKTPITEYAHVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ + D+LL TK GQC+RF +R GR S+GVRG++LA Sbjct: 640 TGLAAITLREEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRP-TGRTSMGVRGMNLA 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M + D + C + Sbjct: 699 DRDEVIGMQL--------DSQGCDL----------------------------------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L VSEKG GKRTS +F NR GKG++ +++ + G +V V VN + Sbjct: 716 ----------LIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITE--KTGNVVGVKAVNHD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAES 908 D++++++ +G +IR+ I + R T GV + + + + V S+ ++R + E +D E Sbjct: 764 DEVMIINTEGIIIRMKCEGISVLGRVTSGVKLINLQEGDIVASIAKVRKGDEEPIDSVED 823 Query: 909 TE 910 T+ Sbjct: 824 TD 825 >gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 840 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/891 (42%), Positives = 552/891 (61%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ I I EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EEKFSQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S+R +L+EG GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG QEPVVL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NP+I LM+ I+GPDFPT A ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHNLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRAKTTIEEHN-NKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R + +V+LN LY++T+LQS F +NM+A+ +P+ TL +L ++ + EVV Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DEV+ +IR S + E AR L+ R Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFG------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I +E N L +I E + Sbjct: 415 -------------------LSLEQAQAILDMRLRRLTGLEREKIEDEYNELLQKIAEYRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II +EL +++ RRT I G + DED I +E++V+T++H GY+K Sbjct: 456 ILANEQLVLKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+Q+RGG+G G+ +D DFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++ E E +N Y+ FATK G V++ + D+I I Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVI---EVERFDDNKYLFFATKQGIVKKTPIEDYINIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ ++++ T G +RFP S +R GR + GV+GI+L Sbjct: 633 KGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESDVRSM-GRAATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD VI M D V G Sbjct: 692 DEGDSVIGM---------------------------------------DVVVPG------ 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q +L V+ G+GKRT ++R +R GKGI+ +V++ N G +V + V D Sbjct: 707 --------QDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKN--GTVVGLKVVKD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +++++ GTLIR + I R T+GV + + +D+ V +V R +S Sbjct: 757 EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTDKS 807 >gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17] gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17] Length = 881 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/890 (42%), Positives = 545/890 (61%), Gaps = 83/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+IDL+ LM I+ PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE ++IV+TEIPY VNKA ++E IAELV+E +I I++ DES RQG R+VI++K Sbjct: 252 IESDES-HDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTKY Sbjct: 311 RDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 371 DLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L I IL+ Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ PRRT I + ED + +V+TVSH+GY+KR PLS Sbjct: 465 LCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ +++ + +DE N+ YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ + DE++ V N++++ + G+ VRF S IR GR S GVRG+ L +GD Sbjct: 645 IAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRLDEGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV+ NDS E Sbjct: 704 DAVVGMIVV----------------------------------NDSETEN---------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE G+GKR+ D+RI+NR GKG++ V++ + G LVA+ V D++ + Sbjct: 720 ------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTE--KTGRLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 ++++ G +IR+ V + R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 772 MIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] Length = 825 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/888 (43%), Positives = 547/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+ I I EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL DL KDTVDF PNYDG EPVVL +RYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+DG A+I NPDI LME I+GPDFPT ++G +GI+ AY TGRGS+ Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVMGHSGIRQAYTTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE G + +I+V E+PYQV KA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRARAIIEDNGG-KARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIEL+R + +V+LN LY+ T +QS F +NM+AL +P+ L +L ++ + E++ Sbjct: 302 VVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALVNREPKVLNLRDMLYHYLQHQIEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR L+ R Sbjct: 362 RRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL RD I E L +I E Sbjct: 413 -----------------FSLSLEQAQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II EL +K+ RRT I G ++ DED I RED++++++H GYVK Sbjct: 456 ILADEQLVLDIISTELNEIKERFGDDRRTEITIGEDEILDEDLIPREDVIISITHSGYVK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ YR+QRRGG+G G+ +D+DFV LF+ +TH +LFF+ G VY+ K + +P Sbjct: 516 RLPVTTYRSQRRGGRGVIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN+L + QGE + ++P E+ N+ Y+ FAT+ G V++ L D+ I Sbjct: 576 SRTARGTPIINLLQIEQGEVVNAVIPV---EAFDNDKYLFFATRQGVVKKTPLDDYANIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D+++SV+ +I++ T G +RFP +R GR++ GV+GI L Sbjct: 633 KVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSM-GRSATGVKGIQL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+VI M IV H + D Sbjct: 692 DEEDKVIGMEIV-HPEND------------------------------------------ 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L V+ KG+GKRT ++RI +R GKGI+ +V+ N G +V + V + Sbjct: 709 ----------VLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKN--GTIVGLKVVEN 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ +++++ GT+IR ++ I R T+GV + + +D+ V +V R+ Sbjct: 757 DEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDDAVSTVTRV 804 >gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9] gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9] Length = 973 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/930 (42%), Positives = 567/930 (60%), Gaps = 47/930 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +TS++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A Sbjct: 49 MTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 108 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 ++ G VMG YHPHG++AIYD + R+AQ +SLR L+++GQGNFGSVDGD PAA RYTE RL Sbjct: 109 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNFGSVDGDSPAAMRYTESRL 168 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ DTVDF PNYD S EP VL AR PN+++NG GIAVGMATNIP HNL Sbjct: 169 TRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIINGSSGIAVGMATNIPPHNL 228 Query: 196 GEVVDGCVAVID------NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 EVV C++++ PD++L +++ + GPDFPTG + GRT I AY TGRG + Sbjct: 229 TEVVSACISLLQKSPQDTTPDLEL--VLQHVLGPDFPTGGTLFGRTNIPQAYRTGRGRFM 286 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA--DLRDESDRQG 307 +R HIE SG R+ IVV EIPYQVNK+ ++E+IAELV E I DIA + RDESDR G Sbjct: 287 MRAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGIITDIARDEFRDESDRDG 346 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI +KRGA ++LNQL+++T +Q FS+ +A++ +P+ L ++AF+ R E Sbjct: 347 MRIVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQPKELPLDKAIRAFLDHRIE 406 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ-------- 419 VV RRT +LL KARDR +L+GL IA+ +LD+V+RIIR S + AR L Sbjct: 407 VVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRADARENLFAYFSNRTIT 466 Query: 420 ------RSWNASDIKDLID--LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 R K ID LI G+ T+ L+ Q AILEL+L RLT L D Sbjct: 467 LRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQIDAILELQLYRLTQLSID 526 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 ++ EL + I E IL+S ++L +I EL ++D+ PRRT I++ ++ ED Sbjct: 527 ELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDPRRTIILDETAELGLED 586 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I E + VTVS+ GY+KR P+S YR QRRGG GR G+ RDEDFV L I STH +L Sbjct: 587 LIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDEDFVAQLIIESTHAYLLC 646 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY K++ +P +GKA+ +++ L GE++ TI+P N ++FA Sbjct: 647 FTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILPVKNLTEEGKN--ILFA 704 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T++G V++ L DF + G IA+ +D DE+++ T + + L T G +RF Sbjct: 705 TRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDVVFLATHDGMAIRFNEQ 764 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL------- 764 +R GR + G RGI+L KGD VI A+ +A +R + + +L Sbjct: 765 DLRPM-GRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERAEALGLLAQLEDAITEA 823 Query: 765 ------ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 + GD ++ + SS + + +E+ L L ILTVSE GFGKRT +R Sbjct: 824 TDASLVLEGDPSDVAAAPPVSSAKLDKLDEK---LGLTPCLILTVSENGFGKRTDVDRYR 880 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 + +R G G+ ++ + G + ++ V+D +++L+S G +IR+ ++R A R+T Sbjct: 881 LQSRGGTGV--INMKTGTKTGKVTSISLVDDTTEMMLISQFGKIIRIDTKQVRAAGRSTS 938 Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAES 908 GV + +D++V + I + ++ E+ Sbjct: 939 GVKLLDLDQDDKVAAAMTIPPEDPKEKLEN 968 >gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] Length = 846 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/886 (42%), Positives = 547/886 (61%), Gaps = 86/886 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 EGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+V+GKYHPHG+ A+YD+L RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G IDNPDI + LM I+GPDFPT +I+G++GIK AY TGRG ++IR Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVIIRS 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+VI Sbjct: 244 KAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A+V+LNQLY++T +Q F + M+AL +P +L +LK ++ F+EEV+ RR Sbjct: 304 ELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S AR L+ + +N Sbjct: 364 TQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISK-FN--------- 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AIL+++L RLTGL R+ I E L IK +ILS Sbjct: 414 ----------------LSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILS 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + LL IIK EL +K + RRT IV G D++ ED I D+V+T++H GY+KR+ Sbjct: 458 DKDLLLKIIKDELNEIKVKYGDERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRL 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y AQRRGG+G + +++DFV + STH ++LFFS+ G VYK K +++P Sbjct: 518 PVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEAGR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N+L L + E+I ++ E + Y++ TK+G +++ L + I ++ Sbjct: 578 TAKGMNLVNLLPLEKDEKIQNVIYLKEFKPDR---YLIMGTKNGLIKKTSLDKYSSIRKN 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++SV T + +I+ TK G ++F + +R GRN+ GV+ I+L Sbjct: 635 GLNAINLRENDELISVRVTTGDCNIIYATKNGYAIKFDENDVRPM-GRNATGVKAITLRD 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM + S+ER Sbjct: 694 DDEVVSMEVA--------------------------------------------SDERD- 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSE G+GKRT ++ + R GKG+ +S+ + G L+ V D D Sbjct: 709 --------LLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVEDED 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++L++D G IR+ V++I + SR GV + T ++E+VV++ ++ Sbjct: 759 ELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKV 804 >gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14] gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14] Length = 876 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G N Y KCA Sbjct: 12 ILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSNNAYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R LL++GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + +EP V+ + PN+LVNG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNPDIDLD LM+ I+ PDFPTGA I G G++ AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + + ++IVVTEIPY VNKA ++E IAELV+E +I I+++ DES RQG R+V++LK Sbjct: 252 IE-SDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDESGRQGMRIVVDLK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++A+VILN+L++ T+LQS FSVN +AL +P L +K FV R +V +RRT+Y Sbjct: 311 RDSNANVILNKLFKMTALQSSFSVNCIALVKGRPRLLGLKDCVKYFVEHRHDVTIRRTQY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L QR Sbjct: 371 ELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L I ILS Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K ELL VK++ RRT I + ED + +V+TVSHLGY+KR PLS Sbjct: 465 LCKKVMKDELLEVKEKYGDARRTEIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G R++DF +++ + H ++L F+ G Y K + +P G ++G Sbjct: 525 FREQARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + + + + DE N+ YV+FATK+G V++ L + + +G Sbjct: 585 RAIQNMLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732 IA+ L DE++ V EN++++ + G+ RF + IR GR + GVRG+ L Sbjct: 645 IAINLAEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTM-GRTATGVRGMKLDGDD 703 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M V +AD Sbjct: 704 DAVVGMVPVNNADV---------------------------------------------- 717 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++ VSE+G+GKR+ D+RI+NR GKG++ +++ + G LVA+ V D + Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITE--KTGRLVAIKNVTDEND 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902 +++++ G IR+ V ++R+ RAT+GV +I + K++ + SV ++ SE+ Sbjct: 771 LMIINKSGIAIRLSVADVRVMGRATQGVRLINLSKKNDIIASVCKVMSSEL 821 >gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126] gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126] Length = 839 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/891 (41%), Positives = 544/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G+ N+ Sbjct: 3 EGENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR +++GQGNFGS+DGD PAA R Sbjct: 63 PYKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A +L D+ K+TVDF+ N+D S +EP VL A+ PN+L+NG GIAVGMATN Sbjct: 123 YTEARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EVV+G A IDN DI + LME I PDFPTGA I G G+K A+ TGRG IV Sbjct: 183 MAPHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIYGYQGVKAAFETGRGRIV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE RE+++VTEIPY VNKA M+EK A LV EK+I I+D+RDESDR G R Sbjct: 243 MRAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V E+++ A +V+LN LY+YT LQ+ FSVN VAL +PE L ++K +V R +V+ Sbjct: 303 IVYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGRPETLNLKDMIKHYVEHRHDVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L +A+ RAH+L G IA+ NLDEV+++IR S +PE AR LM + Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDK--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +AIL++RL RLTGL R+ I E + I+ Sbjct: 414 -----------------FKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLES 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ + IIK E+ ++D RRT I+ + DED I ED+V+T+SH GY+K Sbjct: 457 VLADEGLRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R L+ Y+ Q RGG G G +D+DF LF+ TH +L F+ LG VY KV+RLP G Sbjct: 517 RTLLNEYKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEG 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+A+ N++++ + + ++ +D NN ++V T+ G +++ L + + Sbjct: 577 SKTSKGRAIQNLINIESEDSVRAVINVENLDDADYINNNFLVMCTEKGTIKKTTLEAYSR 636 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G A+ ++ D +L+V+ +N+I++ + G+ +RF S +R GR + GVRGI Sbjct: 637 PRANGINAISINEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPM-GRTAAGVRGI 695 Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +L G D V+ M + +A+ Sbjct: 696 TLKDGKDIVVEMVAITRENAN--------------------------------------- 716 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L VSEKG+GKR+ D+RI+ R GKG++ +V++ + G LVA+ Sbjct: 717 -------------LLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE--KTGELVAIKE 761 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D+D +++++ G IR+ V +R+ RAT+GV + +++ + SVE++ Sbjct: 762 VIDSDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSVEKV 812 >gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] Length = 978 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/917 (42%), Positives = 567/917 (61%), Gaps = 45/917 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A Sbjct: 50 MNSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 109 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 ++ G VMG YHPHG++AIYD + R+AQ +SLR LI+GQGNFGSVDGDPPAA RYTE R+ Sbjct: 110 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRM 169 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ DTVDF PNYD S EP VL AR PN++VNG GIAVGMATNIP HNL Sbjct: 170 TRLAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNL 229 Query: 196 GEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV++ +A++ DL+ ++E ++GPDFPTG + GR + Y TGRG ++R Sbjct: 230 TEVLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLYGRGNLVQTYKTGRGRFMMR 289 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +E+ +G R+ I+ TEIPYQVNK+ ++++IAELV EK + DI+D+RDESDR G R+V Sbjct: 290 AKCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIV 349 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRGA +++LNQLY++TS+Q FS+ +A++ +P+ L + AF+ R +VV R Sbjct: 350 IELKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQPKELPLNEAIWAFIEHRIDVVRR 409 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN------AS 425 RT +LLNKAR+R HVL+G IA+ +LD+V+RIIR S + AR L N + Sbjct: 410 RTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGT 469 Query: 426 DIKDLIDLIDDSSYTI-------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 +++ + +D + Y I + GT+ LS Q AILEL+L RLT L D+ Sbjct: 470 ELQGVT--LDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDE 527 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 + NEL ++ I E IL+S +L +I +EL ++D+ RRT I++ ++ ED Sbjct: 528 LLNELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDARRTTILDESTELTLEDL 587 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I E + VTVS+ GY+KR P+S YR QRRGG GR G+ R+EDFV L I STH +L F Sbjct: 588 IADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTHAYLLCF 647 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY KV+ +P +GKA+ +++ L GE++ TI+P + + YV+FAT Sbjct: 648 TNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPV--KDLAEEGKYVLFAT 705 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 ++G V++ L DF + G IA+ +D DE+++ E I L T G +RF Sbjct: 706 RNGTVKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQD 765 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER--ICYMKHMSAQRRLISGDTE 770 +R GR + G RGI+L K D VI A+ +A +R + ++AQ + + Sbjct: 766 LRPM-GRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAG 824 Query: 771 EITSLKNDSSVEGN------ISEERCQELK-------LKEQFILTVSEKGFGKRTSSYDF 817 E + + E ISE +L+ L IL+VS+ G+GKRT + Sbjct: 825 ESAAAQPLELAEPGELGAPVISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSY 884 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ +R GKG+ ++ +IG + ++ V+D +++++S G +IR+ +R A RAT Sbjct: 885 RLQSRGGKGV--INMKSTPKIGKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRAT 942 Query: 878 KGVVIFSTAKDERVVSV 894 GV + D++V + Sbjct: 943 MGVKLLDLDTDDKVAAA 959 >gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] Length = 859 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/898 (41%), Positives = 551/898 (61%), Gaps = 82/898 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +++ +++ I ++I ++M+ +Y+ Y+++VI+GRA+PD+RDGLKPVHRR+LFGM ++G Sbjct: 4 NTENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGNN 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI GEVMGK+HPHG+A+IYD + RMAQ WSLR +L++GQGNFGSVDGD PA Sbjct: 64 SNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMPA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE RLQ+ A +L+D+ K+TVDF N+D + +EP VL R PN+L+NG GIAVGM Sbjct: 124 AMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNI HNL EVVDG +A IDN DI ++ L++ ++ PDFPTG +I G G+K + TGRG Sbjct: 184 ATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIYGYEGVKQGFETGRG 243 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+RG ++E + RE++V+ E+PYQ+NKAA+ +KIA+L +K I I++ RDESDR Sbjct: 244 RVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI+LKR A A+V++NQLY+Y+ LQ+ + +N VAL +P L +L FV FR Sbjct: 304 GMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKGRPRVLNLKDMLSEFVDFRH 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVVVRRT++ L KA ++AH+L G IA+ +LDEV+ +IR S PE A+ LM R Sbjct: 364 EVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTR------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE+Q++AILELRL RLTG+ RD I+ E + + I Sbjct: 418 --------------------FELSEIQSKAILELRLQRLTGMERDKIKEEYDEVMKLIAY 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +ILS IIK EL VK R+T I +M ED I ED+V+T+SHLG Sbjct: 458 LKEILSDEGLRFKIIKDELEDVKKRFGDERKTEIQYLASEMRMEDIIAEEDVVITISHLG 517 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR YR Q+RGG+G G R+ED++ LF+ STH ++LFF+ G Y KV+ + Sbjct: 518 YIKRTSAYDYRQQKRGGRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEI 577 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664 P G +G+A+ N+++L ++I I+ + D+ ++ Y+V T +G +++ L D Sbjct: 578 PEGEKSGKGRAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIKKTLLED 637 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + ++G A+ ++ D++L + + I++ K G+ +RFP + +R GR ++GV Sbjct: 638 FSRPRQNGVNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVR-DTGRGAIGV 696 Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RGI + D+V+ M IC K Sbjct: 697 RGIEVDNDKDEVVGM-------------ICVNKE-------------------------- 717 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E R +L VSEKGFGKRT ++RI+NR GKG++ ++++ + G+L+A Sbjct: 718 --DETRT---------VLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITE--KTGSLIA 764 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + V + D +++ G IR+ V +IR A RAT+GV + + + +V R+ E E Sbjct: 765 ILDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARLDEQE 822 >gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] Length = 823 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 550/893 (61%), Gaps = 86/893 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V I+ EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Y Sbjct: 4 EGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R L+ G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K +L D+ K+TVDF PN+DG QEP V+ AR+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G +IDNP++ + LM I+GPDFPT +ILG+ GI++AY TGRG +++R Sbjct: 184 HNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G R +I+VTEIPYQVNKA ++E IA+LV++K+I I+D+RDESDR+G R+VI Sbjct: 244 KTDIEEEKG-RHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +VILNQLY++T +Q F + M+AL KPE L IL ++ F++EV+ RR Sbjct: 303 ELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH+L GL IA+ ++DEV+ +IR S N E A+ LM S+N Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMN-SFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL RLTGL R+ I NE L I D+L+ Sbjct: 413 ----------------LSEKQAQAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVLA 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL +K++ RRT I + ++ ED I +++VVT++H GY+KR+ Sbjct: 457 KEELVLKIIKEELTEIKNKYGDDRRTEIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIA 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y AQ+RGGKG + +++DFV +F+ STH ++LFF++ G VYK K + LP Sbjct: 517 ADTYSAQKRGGKGIQAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G LIN+L + E+I ++ F E + + Y + T+ G +++ ++S + I ++G Sbjct: 577 AKGVNLINLLPIETNEKIQAVITFKEFDKTN---YFIMGTRQGLIKKTQVSQYSSIRKNG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V T E++IL+ TK G +RF +R GR + GV+ I+L K Sbjct: 634 LNAINLREDDELIGVRMTTGESEILVFTKNGYAIRFNERDVRPM-GRTATGVKAITLRKE 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++M IV C EG Sbjct: 693 DIAVAMDIV-----------C----------------------------EG--------- 704 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 Q +L +SE GFGKRT ++ R GKG+ +++ + GA+V V D D+ Sbjct: 705 -----QDVLVISENGFGKRTPVSEYTPHRRGGKGMITYKITE--KTGAIVGARVVKDEDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++LV+ IR+ V+ I SR GV + T ++++VV++ +I E V++ Sbjct: 758 MMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDENVEK 810 >gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B] gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B] Length = 849 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/888 (42%), Positives = 548/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I SV I +EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ K Sbjct: 2 EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD AA R Sbjct: 62 GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +IDNP+ + LM I+GPDFPTGA I+G GI++AY TGRG IV Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR S+IE+ +G R +I+ TEIPYQVNKA ++E IAELV++K+I I+DLRDESDR G R Sbjct: 242 IRAKSNIEEENG-RHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+ A+ ++ILN LY++T LQ F V M+AL + + L +L +V F++EV+ Sbjct: 301 IVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + LNKA RAH+L GL IA+ N+D V+ IIR S E A+ LM Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDE--------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AILE++L RLTGL RD I +E N L +++ Sbjct: 412 -----------------FALSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S +LL +IK ELL +K + RRT I + + ++ ED I ED+V+T++ GY+K Sbjct: 455 ILASEEKLLEVIKNELLEIKAKYGDERRTSIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ VY AQRRGG+G + +++DFV + I STH+ VLFF++ G VYK + + +P Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDA 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G +IN++++ E+I T++ + Y+ TK G V++ L++F + Sbjct: 575 GRQAKGTNIINLIAIEPDEKIQTVLTVTDKRRDG---YLFMGTKQGIVKKTHLNEFRNLR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L DE+L V+ + +++ T+ G +RF +R GR + GV+ I+L Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVR-HMGRTASGVKAITL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD + +C Sbjct: 691 -KGDDIA---------------VC------------------------------------ 698 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++ + E+ +L +SE GFGKRT ++++ +R G G+ +S+ + G LV Sbjct: 699 -MDIAVDEEELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISE--KTGKLVGATICKL 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +D+++L++ G IR+ V++I SR+ GV + T ++E++V++ +I Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKI 803 >gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 822 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/901 (41%), Positives = 561/901 (62%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM------------- 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 G LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 409 -------------GKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSDKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ D DE Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + +++++D G +IR V I R+T GV + +D ++V +V+ + + E+ E E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVDAVEKEEVGTENE 817 Query: 908 S 908 + Sbjct: 818 T 818 >gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] Length = 816 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/887 (42%), Positives = 555/887 (62%), Gaps = 88/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +EM+ +YL YA++VI+ RA+PD+RDGLKPV RRIL+ + +G+ NK + K A Sbjct: 10 VLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YD + RMAQ++S R L++G GNFGS+DGD AA RYTE R+ Sbjct: 70 RVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGM+TNIP HNL Sbjct: 130 ARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG VA+IDNPD+++ LM+II+GPDFPTG +I+G+ I AY TGRG + +RG + Sbjct: 190 GEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVRGKAR 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + +I++TEIPYQVNKA ++EKIA LVR+++I I+DLRDESDR+G R+VIELK Sbjct: 250 IEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIVIELK 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G VILN+LY+YT LQ + V M+AL P TL +L ++ ++EVV RRTKY Sbjct: 310 KGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTRRTKY 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+AN+D++V++IR +P+ +TARR L++ ++N Sbjct: 370 QLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIE-NFN------------ 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E Q AIL +RL RLTGL RD I E L +I IL+ Sbjct: 417 -------------LTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEG 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LLGIIK ELL +K++ RRT I +D++ ED I E +V+T++H GY+KR+P+ + Sbjct: 464 KLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDI 523 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG G+ ++EDFV +F STH LFF++ G VY+ +V+ +P S QARG Sbjct: 524 YRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARG 583 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 A++N+L L + ERITT++P E DE Y+V T++G +++ L+++ + +G I Sbjct: 584 TAIVNLLELEEEERITTVIPIREFDEER----YLVMVTRNGMIKKTPLAEY-ESRYTGLI 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + L DE++ V+ +++ T G+ + F + +R GR ++GV+ I+L GD Sbjct: 639 GLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSM-GRTAMGVKAITLEDGDY 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M + D++ D+ Sbjct: 698 VVGMGV----DSEGDD-------------------------------------------- 709 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++EKG+GKRT ++R+ +R GKG+ ++++ N G L V V ++ +I Sbjct: 710 -----LLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN--GNLAGVKVVREDHDLI 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 L++ +G +IR V I R T GV + + +RVVS+ RI E Sbjct: 763 LITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEE 809 Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 20/220 (9%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E +V V+ G +K+ PL+ Y ++ G G+ +RDED + D+ + SV+ + Sbjct: 610 ERYLVMVTRNGMIKKTPLAEYESRY---TGLIGLTLRDEDELIDVKYTDGNQSVIIVTHR 666 Query: 596 G--FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G +KE R R + ++L G+ + + +S ++L V+ T+ Sbjct: 667 GKAIHFKENEVR-----SMGRTAMGVKAITLEDGDYVVGMGV----DSEGDDLLVI--TE 715 Query: 654 HGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R L ++ +R GK A + + V+ +++D++L T G +R + Sbjct: 716 KGYGKRTPLEEYRLQSRGGKGLITANITEKNGNLAGVKVVREDHDLILITSEGIIIRTRV 775 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 I GRN++GV+ I L +GD+V+S+A + + D +E Sbjct: 776 EGISRL-GRNTLGVKVIRLEEGDRVVSLARISPEEKDIEE 814 >gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] Length = 861 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/895 (42%), Positives = 547/895 (61%), Gaps = 92/895 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DEM+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM +GV N+ Y K A Sbjct: 7 IIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YD + RMAQ WSLR L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A +LDDL K+TVDF PN+D S QEP VL ++ PN+LVNG GIAVGMATN+ HNL Sbjct: 127 RKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD + +DN DI+ + L++ ++ PDFPTG +I G G ++A TGRG IVIR + Sbjct: 187 GEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIYGVDGARDALLTGRGRIVIRAKAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ SG REQI+VTEIPYQVNKA M++K A+LV +K+I I+D+RDESDR G R+V ELK Sbjct: 247 IEE-SGGREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVYELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +V+LN+LY+YTSLQS FS+N + L +P L ++ FV FR EVVVRRTKY Sbjct: 306 RDAIPNVVLNKLYKYTSLQSSFSINNICLVDGRPRLLNLREMITEFVKFRHEVVVRRTKY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA N+DEV+ IIR S +PE AR LM+R Sbjct: 366 DLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMER--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q+RAI+E+RL +LTGL +D +R E L I + DIL+ Sbjct: 411 -----------FALSDLQSRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + IIK EL+ ++ + RR+RI +M+ ED I E++V+T+SH GY+KR L Sbjct: 460 RRMQIIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRTNLDE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G RD+DF+ LF+ + H +L F+ G + +V+ +P G+ A+G Sbjct: 520 FKVQSRGGMGSKGSTTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ Q ++I + + D+ N ++V TK G +++ L + + +G Sbjct: 580 RAIQNLLNIEQDDKIKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPRANGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + DE+L N+++L TK G+ +RF + +R GRN+ GVR ++L Sbjct: 640 NAITIRENDELLEARLTDGTNEMVLATKAGRAIRFNEAKVRPM-GRNASGVRAVTLQNDT 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M IC Sbjct: 699 DEVVGM-------------IC--------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIGALVAVF 845 +K + I+ VSEKG+GKR+ D +RI+NR GKG++ +++ ++ G L+A+ Sbjct: 707 VKDNTETIMVVSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINIT--DKTGPLLAIK 764 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V D D +++++ G IR+ ++ IR+ RA +GV + + + +V R+ S Sbjct: 765 TVADEDDLMIITKAGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVARVPRS 819 >gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] Length = 846 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/888 (41%), Positives = 557/888 (62%), Gaps = 83/888 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y Sbjct: 3 EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQ+WS+R +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D S EPVV+ R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG VA ID+ DI++D LM+ I+ PDFPTG +I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S +E+ +G +E I+VTEIPYQVNKA M++K A+L+ +K+I I+ +RDESDR G R+V Sbjct: 243 AKSSLEEVNG-KECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +LKR A +++LN L+++T+LQS FSVN +AL +PE L I+ FV R EVVVR Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGRPEMLNLKDIIYHFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA DRAH+L GL IA N+DEV+ +IR S N E AR++L+ R Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D +R E + + IK+ DIL Sbjct: 411 ---------------FELSELQARAIVEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + +IK ELL VK++ RR+ I D+ ED I E +++T+SH GY+KR Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ G R+EDF+ LF + H +LFF+ G + +V+ +P GS Sbjct: 516 SLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q +R+ + + DE NN +V+ ATK G V++ L + + Sbjct: 576 SSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L K G+ +RF R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPM-GRNASGVRGITL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 A D +E+ + + +E N Sbjct: 695 AD------------------------------------DNDEVVGMISVDDMESN----- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 IL VSE G+GKR+S D+RI+NR GKG++ +++ + G LVA+ V D Sbjct: 714 ----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVAIKNVTD 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +D +++++ G IR+ V+++R+ RAT+GV + + + + +V ++ Sbjct: 762 DDDLMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVAKV 809 >gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] Length = 831 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/891 (43%), Positives = 552/891 (61%), Gaps = 94/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY K A Sbjct: 9 IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP H + Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRI 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D V +ID+P +L+ +++ I GPDFPTG +I G+ GIK AY TGRG I IR +H Sbjct: 189 DEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGRIKIRAKTH 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I IA++RDESDR G RVV+ELK Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIRVVVELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RRT + Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSVVIRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+++ +N Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEK-FN------------ 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL RD I NE L EI+ IL S Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP+ Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S A G Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581 Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N++SL E+I T F ED+S + F TK+G ++R LS+F I G Sbjct: 582 KAVVNLISLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRSVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + E IL+ T G CVRF + +R GR + GV I Sbjct: 636 VKAINLDGDDELVTAKIIHPEIQQILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V S + EE Sbjct: 695 PKDYVIGATVV------------------------SSENEE------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 712 ---------ILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R + E Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNV-DDDKVVSIARCPKEE 810 >gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] Length = 697 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/697 (50%), Positives = 482/697 (69%), Gaps = 19/697 (2%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP H Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+VTEIPYQVNKA ++EKIAELV++K++ I+ LRDESD+ G R+VIE Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVALN +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425 Query: 434 ID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + Y I DG +L+E Q +AIL+LRL +LTGL + I E +L EI Sbjct: 426 AGTDAARPEWLEPEYGI-RDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 E + IL+S RL+ +I++EL +V+D RRT I D++ E+ I RED+VVT+SH Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSH 544 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVK LS Y +QRRGGKG+S M+DED + L + +TH ++L FS+ G Y+ KV+ Sbjct: 545 GGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVY 604 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNK 661 +LP+ S ARGK ++NIL L +GERIT I+ F ED+ ++ AT G V++ Sbjct: 605 QLPLASRTARGKPIVNILPLEEGERITAILRVDEFSEDK------FIFMATGDGTVKKTP 658 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698 L+ F + +G IA+ L D ++ V+ EN+I+L Sbjct: 659 LNQFANVRSNGLIAVNLREDDSLIGVDITNGENEIML 695 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EIT+ +D +E EL +E ++T+S G+ K D+ R GKG AT Sbjct: 519 EITAASHDIDME---------ELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSAT 569 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887 + + I L+ N +D I+ S +G R+ V ++ +ASR +G V I + Sbjct: 570 KMKDEDHIERLLV---ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEE 626 Query: 888 DERVVSVERIRE 899 ER+ ++ R+ E Sbjct: 627 GERITAILRVDE 638 >gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] Length = 820 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/883 (42%), Positives = 545/883 (61%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ +K + K A Sbjct: 8 VIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+VM +HPHG+ AIYD++ R+AQD+S R LIEG GNFGS+DGDPPAA RYTE R+ Sbjct: 68 GIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF PNYD +EPV+L A+ PN+L+NG GIAVGMATNIP HN+ Sbjct: 128 AKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +IDNP++ D LM++I+GPDFPTGA I+GR GI+ AY TGRGSI IR + Sbjct: 188 GEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIKIRAQAT 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R I+V EIP+QVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIELK Sbjct: 248 IETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+ +VILNQLY++T +Q F + M+AL +P+ L +L ++ +++V+ RRTKY Sbjct: 308 KDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKDVITRRTKY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH++ GL IA+A+LDEV++IIR S E A++ L+ ++N Sbjct: 368 ELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVT-NFN------------ 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+EVQ AI+E+RL LTGL + + E L +I +L+ Sbjct: 415 -------------LTEVQAEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADEK 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++LGIIK EL VK + PRRT I E D + ED I E MVVT+++ GY+KR+ L Sbjct: 462 KVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISLD 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGGKG + + ++EDFV LF+ STH +LFF++ G Y+ KV +P A+ Sbjct: 522 TYRSQRRGGKGITAMGTKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G L+N+L ++ GE +TT++P + Y+ ATK G V++ LS++ R G Sbjct: 582 GTPLVNLLYISSGEYVTTVIPI---KDFTEEAYLFMATKQGVVKKTNLSEYDTSRRDGIN 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE+++VE +I+L+T+ G +RFP +R GR + GV+GI+L D Sbjct: 639 AINLDESDELVAVELTHGREEIILSTREGMAIRFPEEDVRPM-GRTARGVKGITLTGDDS 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++ D D GD Sbjct: 698 ------VVNMDVVKD----------------GGD-------------------------- 709 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V+ G+GKRT+ ++R R GKGI S N G +V V D+D+I+ Sbjct: 710 -----LLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRN--GPVVGALVVKDDDEIM 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++S +G +IR+ ++ R T+GV + A+++ +V+V ++ Sbjct: 763 MISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKV 805 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 5/104 (4%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E ++ +++G K+T+ ++ S R G I A ++ + +E LVAV + ++IIL Sbjct: 608 EEAYLFMATKQGVVKKTNLSEYDTSRRDG--INAINLDESDE---LVAVELTHGREEIIL 662 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + +G IR P ++R R +GV + D+ VV+++ +++ Sbjct: 663 STREGMAIRFPEEDVRPMGRTARGVKGITLTGDDSVVNMDVVKD 706 >gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72] gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E] Length = 888 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/917 (42%), Positives = 571/917 (62%), Gaps = 62/917 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A Sbjct: 5 VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244 Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G RV Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+EVV Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + + Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424 Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 +D +ID + Y + + T Y LS Q AIL+++L RLTGL +D + Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED I Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F++ Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G V++ + + +PI S ++G+ L+N+++L E +T I+P + DE+S +V FAT Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF +I Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R + R + GVRG M + L A D +E L+ D +EI+ Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATIDEEE-------------LLDEDGDEIS 755 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 +D +V +S + K+ IL E GFGKRT D+ R GKG+ A S Sbjct: 756 ---DDFAVSRVVS----LVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866 Query: 894 VERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 867 MACVEHDD--DEIEESE 881 >gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR] gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR] Length = 814 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/871 (43%), Positives = 542/871 (62%), Gaps = 85/871 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I ++I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 6 EFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDK 65 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD++ R L++G GNFGS+DGD AA R Sbjct: 66 PHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMR 125 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ KDTVDF PN+D + +EPVVL AR PN+L+NG GIAVGMATN Sbjct: 126 YTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATN 185 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++DG + +IDNPD LM ++GPDFPTG +I+GR GIK+AY TGRG+I Sbjct: 186 IPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIR 245 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE S + +I+V E+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G + Sbjct: 246 IRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQ 305 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL++ A+ V+LNQL+++T LQ F V M+AL +P+ L L ++ +++V+ Sbjct: 306 IVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVI 365 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L+KA RAH+L GL IA+ +LDEV++ IR S E AR LM + Sbjct: 366 TRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFG------- 418 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q +AIL++RL +LTGL R+ + E +L I Sbjct: 419 -------------------LSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKA 459 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L++ +LGIIK+ELL +K++ + PRRT I ++++ ED I EDMV+T++HLGY+K Sbjct: 460 VLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIK 519 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L YR Q+RGG+G + + ++EDFV LFI +TH +LFF++ G VYK KV +P Sbjct: 520 RIALDTYRNQKRGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEA 579 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 QA+G A++N+L ++ E+IT ++P S Y++ T+ G +++ L ++ Sbjct: 580 GRQAKGTAIVNLLYISGDEKITAVIPV---RSFDTEEYLLTITRKGVIKKTPLVEYGSTR 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ LD DE++ V+ +N++++ TK G+ +RF +R GR + GVRGIS Sbjct: 637 KDGIIALSLDENDELIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSM-GRAARGVRGIS- 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +S + +I DT E Sbjct: 695 ----------------------------LSEKDEVIGIDTIE------------------ 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +L V+EKGFGKR+ D+R R GKGI +K N G LV + V Sbjct: 709 ------QGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRN--GHLVGIKVVKP 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 D+++L++ +G +IR+ V+ I R+T+GV Sbjct: 761 GDELMLITAEGIIIRLDVDGISTMGRSTQGV 791 Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 56/103 (54%), Gaps = 5/103 (4%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+++LT++ KG K+T ++ + + G I A + + +E L+ V N +++I+ Sbjct: 612 EEYLLTITRKGVIKKTPLVEYGSTRKDG--IIALSLDENDE---LIDVKLTNGKNEVIIG 666 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + +G IR E+R RA +GV S ++ + V+ ++ I + Sbjct: 667 TKEGKAIRFAEEEVRSMGRAARGVRGISLSEKDEVIGIDTIEQ 709 >gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017] gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] Length = 871 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 557/914 (60%), Gaps = 56/914 (6%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 SSD +++ I + DEM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 3 FSSDPAQDR-IILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGL 61 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI G GNFGS+D DPP Sbjct: 62 TPDRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPP 121 Query: 126 AAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTECRLQ + LL D+ ++TVDF N+DGS QEP+VL AR P +L+NG GIAV Sbjct: 122 AAMRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAV 181 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNLGEV+DG VA+I NP+I LM+II GPDFPTG ILG GI+ AY TG Sbjct: 182 GMATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTTG 241 Query: 245 RGSIVIRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 RGSI +RGV+ IE + SG DRE I++TE+P+Q NKAA++E+IAE V +KR+ I+D+R Sbjct: 242 RGSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIR 301 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR A V+LN LY+ T +Q+ F NM+AL G P+ TL L Sbjct: 302 DESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLSV 361 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ FRE+ ++RRT++ L KA++R H+L GL IA+ NLD V+++IR + + AR+ELM Sbjct: 362 FLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELM-- 419 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 DG LS+ Q AIL+++L RLT L + I E L Sbjct: 420 -----------------------DG-FGLSDTQADAILQMQLRRLTALEAEKIEREHQDL 455 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + DIL+ R R+L II+ E+ +K + +PRRT I L D++D D I + V+ Sbjct: 456 QERIADLEDILARRERVLEIIETEVTELKTKFASPRRTLIEANLADLDDIDLIANDQAVI 515 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 V+ GYVKR+P+ + AQ R +GR+G ++++D V F H SVLFFS G VY Sbjct: 516 LVTEQGYVKRMPVDTFNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYC 575 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 + +++P+ S ARG L+ +L + + E+IT+++P F EDE Y+V T G + Sbjct: 576 LRAYQIPVSSRTARGVPLVQLLPIPREEKITSVIPVSEFSEDE------YLVMMTAGGFI 629 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L+ F I +G IA+ L+ D + V E+ I++ ++ G + F ++ Sbjct: 630 KKTALAAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRP 689 Query: 718 -GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVR + L +GD+ I M I+ A + Sbjct: 690 LGRATRGVRAMRLREGDEFIGMDILSSAVVETLGNATDADDEETD--------------D 735 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 D VE + +EE + ++ ++L ++ GFGKR FR+ NR+GKG+ AT K+ Sbjct: 736 PDVLVEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLK 795 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 L A+ VN D+++LV+ +G +IR V +I SRA GV + +D+ + +V Sbjct: 796 TPDQLAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVAL 855 Query: 897 IRESEIVDEAESTE 910 + ++ DE TE Sbjct: 856 VPPEDLSDEEGETE 869 >gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] Length = 818 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/883 (41%), Positives = 555/883 (62%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+ +K Y K A Sbjct: 8 VIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+VM +HPHG++AIYDA+ R+AQD++ R LI+G GNFGS+DGDPPAA RYTE R+ Sbjct: 68 GIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF PNYD +EP +L ++ PN+LVNG GIAVGMATNIP HN+ Sbjct: 128 AKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHNM 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +I +P++ D LM++I+GPDFPTGA I+G+ GI+ AY TGRGS+ +R + Sbjct: 188 GEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVKMRAQTT 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R I+V EIPYQVNKA ++EKIAELV++K+I I+DLRDESDR+G R+VIELK Sbjct: 248 IETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + ++ +VILN LY++T +Q F + M+AL +P+ L ++ ++ +++V+ RRT+Y Sbjct: 308 KDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKDVITRRTRY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH++ GL IA+ANLDEV++ IR S N E ARR L+ + +N Sbjct: 368 ELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDK-FN------------ 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q AI+E+RL LT L + + E L +I IL+ Sbjct: 415 -------------LTEIQAEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADEQ 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L II+ ELL VK++ RRT I D + ED I EDMVVT+++ GY+KR+ + Sbjct: 462 KVLNIIRDELLVVKEKFADARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISMD 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+Q+RGGKG + + ++EDFV DLFI STH +LFF++ G VY+ KV+ +P S A+ Sbjct: 522 TYRSQKRGGKGITAMGTKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+LS + E +TT++P E E + Y+ ATKHG V++ L+++ R G I Sbjct: 582 GTPIINLLSFDSDEYVTTVIPIKEFEETA---YLFMATKHGIVKKTALTEYNSSRRDGLI 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD +D++++VE + +I++ T+ G +RF +R GR + GV+GI+L++ Sbjct: 639 AINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRPM-GRVTRGVKGITLSQ--- 694 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ND V+ ++ +E Sbjct: 695 ------------------------------------------NDHVVKMDVIKEGAS--- 709 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +LTV+ G+GKRT ++RI R GKGI +K N GA+ V V++ D+++ Sbjct: 710 -----LLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRN--GAVTGVLVVSEEDEVM 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++S +G +IR+ V ++ R T+GV + T +++ +V++ ++ Sbjct: 763 MISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKV 805 Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 6/115 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L +E ++T++ +G+ KR S +R R GKGI A + + + L F + Sbjct: 496 IEDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTKEEDFVRDL---FIAST 552 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESE 901 + ++ ++KG + R+ V E+ ASR KG I S DE V +V I+E E Sbjct: 553 HHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTTVIPIKEFE 607 >gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] gi|89516338|gb|EAS18999.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] Length = 840 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 553/886 (62%), Gaps = 85/886 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N+ Y K ARI Sbjct: 10 INIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKKSARIV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGDPPAA RYTE R++K Sbjct: 70 GEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEARMRKI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +L D+ K+TVD + N+D + EP V+ R PN+LVNG GIAVGMATN+P HNL EV Sbjct: 130 SEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPHNLTEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG VA IDN DI++D L+ ++ PDFPTG +I G G+K+A TGRG + IRG +E+ Sbjct: 190 IDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIYGYDGVKDAMHTGRGRVKIRGRVRLEE 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G RE I+V E+PYQVNKA M++K A+L+ EK++ I+ +RDESDR G R+V LKR A Sbjct: 250 VKG-RECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVYILKRDA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++++N+LY++T+LQS FSVN +AL +P+ + ++ FV R +VVVRRT++ L Sbjct: 309 IPNIVINKLYKHTALQSSFSVNNIALVKGRPQLLNVKEMIHYFVEHRHDVVVRRTEFELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 369 KAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKR------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q RAI+E+RL +LTGL +D +RNE N L I + DIL+ + R + Sbjct: 411 --------FELSEIQARAIVEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRM 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK+EL+ +K++ RR++I D+ ED I E +V+T+SH GY+KR P++ Y+ Sbjct: 463 DIIKEELIEIKEKYGDERRSQIEYAGGDLSIEDMIADEQVVITISHAGYIKRTPITEYKT 522 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG G+ RDEDF+ D+F+ + H +LFF+ G + +V+ +P GS ++G+A+ Sbjct: 523 QNRGGVGQKASTTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTSKGRAI 582 Query: 619 INILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 N++++ Q + + ++ + DE N+ YV+ TK G V++ L + + +G A+ Sbjct: 583 QNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPRTNGINAI 642 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQV 735 + D +L + T ++ ++L K G+ +RF + R GRN+ GVRGI LA D+V Sbjct: 643 TIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAM-GRNASGVRGIRLADDNDEV 701 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M V D++ Sbjct: 702 IGMVAVNDMDSN------------------------------------------------ 713 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 IL VSEKG+GKR+S D+R +NR GKG++ V++ + G LVA+ V D+D +++ Sbjct: 714 ----ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTE--KTGGLVALKNVTDDDGLMI 767 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ G IR+ V +R+ RAT+GV + + ++ + +V ++ + E Sbjct: 768 INKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQEE 813 >gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152] gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152] Length = 838 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/889 (41%), Positives = 555/889 (62%), Gaps = 85/889 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ Y Sbjct: 3 EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD++ RMAQDWS+R ++++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK + +L D+ KDTVD N+D + QEPVVL R PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G VA I+N DI++D LM+ + PDFPTG +I G G+++A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ G RE I+VTEIPYQVNKA M++K A+LV EK+I IA++RDESDR G R+V Sbjct: 243 AKAVIEEVKG-RECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGRPEQLNLKQLIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA RAH+L GL IA N+DEV++IIR S N + AR L++R Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E + + + I + DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R IIK ELL +K++ RR+ I DM ED I +VVT+S+ GY+KR Sbjct: 456 ANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G Sbjct: 516 NLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+A+ N++++ Q + + + + +E N+ YV+ ATK G V++ L + + Sbjct: 576 NTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L G+ +RF + R GR + GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+VI M V ND Sbjct: 695 QHENDEVIGMVAV-----------------------------------NDM--------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E IL VSEKG+GKR+S D+RI+NR GKG++ ++S+ + G LVA+ V+ Sbjct: 711 --------ESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D++ +++++ G +IR+ V ++R+ RAT+GV + + D+ + +V ++ Sbjct: 761 DSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVAKV 809 >gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] Length = 822 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKDELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSESSDDAYLFFTTRHGVVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + SE Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASE 808 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQGEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I +SE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVDSESSDDA 609 >gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 815 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/882 (42%), Positives = 547/882 (62%), Gaps = 85/882 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ K Y Sbjct: 7 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 67 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 247 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L +++ +E V+ RR Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 366 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 460 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 461 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 520 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 580 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N+L++ ERIT ++ E + + ++ T+ G V++ L++F I +SG Sbjct: 581 AKGTAIVNLLAVEADERITAVIQVREFKP---DRFLFLGTRKGVVKKTPLAEFANIRKSG 637 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+LG+ + FP +R GR + GVRGI+L+ G Sbjct: 638 LRAVNLDEDDELIGVKFTDGENRIMLGTRLGKAITFPEDGVRSM-GRIARGVRGITLSDG 696 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M I LK+ S V Sbjct: 697 DEVVAMDI----------------------------------LKSGSEV----------- 711 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V + + Sbjct: 712 --------LTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRGSQE 761 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++L++ +G +IR V+EI + SR T+GV + + A+++RV S+ Sbjct: 762 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASM 803 >gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] Length = 881 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/890 (42%), Positives = 545/890 (61%), Gaps = 83/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+IDL+ LM I+ PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE ++IV+TEIPY VNKA ++E IAELV++ +I I++ DES RQG R+VI++K Sbjct: 252 IESDES-HDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTKY Sbjct: 311 RDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 371 DLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L I IL+ Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ PRRT I + ED + +V+TVSH+GY+KR PLS Sbjct: 465 LCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ +++ + +DE N+ YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ + DE++ V N++++ + G+ VRF S IR GR S GVRG+ L +GD Sbjct: 645 IAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRLDEGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV+ NDS E Sbjct: 704 DAVVGMIVV----------------------------------NDSETEN---------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE G+GKR+ D+RI+NR GKG++ V++ + G LVA+ V D++ + Sbjct: 720 ------VMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTE--KTGRLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 ++++ G +IR+ V + R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 772 MIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] Length = 960 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/703 (50%), Positives = 485/703 (68%), Gaps = 13/703 (1%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GIT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 7 GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGD AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K AH LL DL K+TVDF PNYDG+ P V+ R PN+LVNG GIAVGMATNIP HN Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV++ C+A+I NPD+ L+ +ME I GPDFPT +I G+ GI+ AY TGRG + IR + Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGIINGKAGIEQAYRTGRGKVHIRARA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE RE IVV E+PYQVNKA ++E+IAE V++K+I I+ LRDESD+ G R+V+E+ Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q +F +NMVAL +P+ FTL +L AF+ R EVV RRT Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQPKIFTLKEMLDAFLRHRREVVTRRTV 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L LAIA+AN+DE++ +I+ S A++ L+ R W D+ +++ Sbjct: 367 FELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLERA 426 Query: 435 DD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I +G+ +L+E+Q +AIL+LRL +LTGL + I +E L I Sbjct: 427 GDDAARPEWLEAEYGI-REGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIA 485 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E L IL++ SRLL +I +EL + KD RRT I D+ ED I RED+VVT+SH Sbjct: 486 ELLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIEREDVVVTLSHE 545 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK P++ Y AQRRGGKG+S M++EDF+ L + +TH +L FSS G +Y KV++ Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRLYWMKVYQ 605 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S QARGK ++N+L L GERIT I+P + E ++ +V AT +G V++ LS + Sbjct: 606 LPLASRQARGKPIVNLLPLQDGERITAILPVAQFE---DDKFVFMATANGTVKKTALSAY 662 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 + G IA+ L+ DE++ V+ NDI+L + G+ VRF Sbjct: 663 SKPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRF 705 Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 55/184 (29%) Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRGI L +G +V+S+ + KN Sbjct: 784 GRTATGVRGIKLEEGQKVVSLIVP----------------------------------KN 809 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D + ILT +E GFGKRT+ ++ +R KG+ + VS+ N Sbjct: 810 DGA-------------------ILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERN- 849 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V V D D+++L+++ GTL+R +E+ + R T+GV + T +DE VV ++RI Sbjct: 850 -GKVVGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDELVVGLQRI 908 Query: 898 RESE 901 E E Sbjct: 909 DEVE 912 >gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] Length = 814 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/883 (43%), Positives = 543/883 (61%), Gaps = 85/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+ +K Y K A Sbjct: 17 IMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYKKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+ +YHPHG+AA+Y+ + R+AQD++ R LI+G GNFGSVDGD PAA RYTE RL Sbjct: 77 VVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTEARL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF NYDGS +EPVVL AR P +LVNG GIAVGMATNIP HNL Sbjct: 137 SKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V +ID PD DL + +II+GPDFPT +I+GR GI+NAY TGRGSI +R + Sbjct: 197 GEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKVRAKAQ 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E S + QIVVTEIPYQVNKA +++ I +LVREK+I I DLRDESDR G R+VIEL+ Sbjct: 257 VETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRIVIELR 316 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R VILNQLY++T +Q F V M+AL +P L +L ++ ++EV+ RRT+Y Sbjct: 317 RDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEVITRRTRY 376 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL +A RAH++ GL IA+ LDEV+RIIR +PN A R LM+R Sbjct: 377 LLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMER--------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AI+++RL RLT L R+ + E L I ++L+S + Sbjct: 422 -----------FQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEA 470 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ I++ ELL +K + PRRT+IV ++E ED I RED+VVT++H GY+KR P+ Sbjct: 471 RVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDT 530 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGG+G + R+ED V D+F+ +TH +LFF++ G V++ + +P QARG Sbjct: 531 YRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARG 590 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 L+N+L LN+GE IT ++P E E + Y++ AT+ G V++ L ++ R G +A Sbjct: 591 TPLVNLLYLNKGETITAVIPIRELE---EDSYLLMATRKGIVKKTSLGEYHTSRRDGLLA 647 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD D+++ V N+++L T+ G+ +RF +R GR + GVRGI+L D V Sbjct: 648 INLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPM-GRAARGVRGIALDDDDMV 706 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + + + + DA+ Sbjct: 707 VGL-VKVREDAE------------------------------------------------ 717 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++ VSE+GFGKRT+ ++R R GKGI +V+ + G + AV V D+++L Sbjct: 718 ----LVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVT--DRTGPVAAVAVVKLEDELML 771 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +S +G LIR+ V +I R T+GV + +RVV++ RI+ Sbjct: 772 ISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARIQ 814 Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++ ++L + KG K+TS ++ S R G + A + ++E LV V N++++L Sbjct: 616 EDSYLLMATRKGIVKKTSLGEYHTSRRDG--LLAIN---LDEDDDLVGVLRTEGNNEVML 670 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V+ +G IR +E+R RA +GV + D+ VV + ++RE Sbjct: 671 VTRRGKAIRFGEDEVRPMGRAARGVRGIALDDDDMVVGLVKVRE 714 Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E ++T++ +G+ KR +R R G+GI+A E + +F + ++ Sbjct: 510 REDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGT---REEDIVRDIFVTTTHHYLLF 566 Query: 856 VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 +++G + R+ +EI A R +G V + K E + +V IRE E Sbjct: 567 FTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETITAVIPIRELE 615 >gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] Length = 864 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTNDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNP ID D LME I+ PDFPTGA I G G+++AY TGRG IVIR + Sbjct: 192 NEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIYGLQGVRDAYETGRGRIVIRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IV+TEIPY VNK ++E IA+LV+E ++ I++ DES RQG R+VI++K Sbjct: 252 IE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P L +K FV R EV +RRT++ Sbjct: 311 REANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLALKDCVKYFVEHRHEVTIRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A++ L R Sbjct: 371 ELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L I IL Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT+I+ + ED + +V+TVSHLGY+KR PLS Sbjct: 465 LCKKVMKDELNEVKEKYGDDRRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G+ A+G Sbjct: 525 FREQARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + + I+ +DE N+ YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ + + DE++ V N++++ + G+ VRF IR GR + GVRGI L KG Sbjct: 645 IAINIANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTM-GRTATGVRGIRLDKGD 703 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQV+ M +V NDS Sbjct: 704 DQVVGMIVV-----------------------------------NDSV------------ 716 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++ ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V D++ Sbjct: 717 ----QETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNIT--DKTGRLVAIKNVTDDND 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++++ G IR+ V + R+ RAT+GV + + +K V+ SV + SE+ Sbjct: 771 LMIINKSGITIRLAVADCRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 821 >gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] Length = 824 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/882 (42%), Positives = 548/882 (62%), Gaps = 85/882 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ K Y Sbjct: 16 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE Sbjct: 76 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYDGS +EP+VL A++P +LVNG GIAVGMATNIP Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV++G + +IDNPD ++ LM +I+GPDFPT +ILG I+ AY TGRG I +R Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +HIE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VI Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL+R ++ +VILNQLY++T LQ F V M+AL +P L +L +++ +E V+ RR Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 375 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ Sbjct: 376 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 422 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 469 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+P Sbjct: 470 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 529 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P Sbjct: 530 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 589 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A++N+L++ ERIT ++ E + + ++ T+ G V++ L++F I +SG Sbjct: 590 AKGTAIVNLLAVEADERITAVIQVREFKP---DRFLFLGTRKGVVKKTPLAEFANIRKSG 646 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+L+ G Sbjct: 647 LRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFPEDGVRSM-GRIARGVRGITLSDG 705 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V++M I LK+ S V Sbjct: 706 DEVVAMDI----------------------------------LKSGSEV----------- 720 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 LTV+E G+GKRT++ ++R R GKG+ V++ + G++V + V + + Sbjct: 721 --------LTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGSVVGIRVVRGSQE 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++L++ +G +IR V+EI + SR T+GV + + A+++RV S+ Sbjct: 771 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASM 812 >gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] Length = 814 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 547/891 (61%), Gaps = 90/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ K+TVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID N + ++ +++II+GPDFPTGA+ILG GI+ AY TGRG I + Sbjct: 189 HEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G R+ Sbjct: 249 RAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+VILNQLY++T LQ F V M+AL +P+ ++ +L ++ +EEVV Sbjct: 309 CIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLNYYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ L++ Sbjct: 369 RRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIE----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ +AI+++RL LTGL R+ + E L I E I Sbjct: 418 ---------------AFELTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L + + RRT I D+ ED I R+D+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEILIIDGKYSDERRTSIGFDEFDISMEDLIPRQDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ DED+V +LF+ STH ++FF++ G VY+ K + +P S Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT ++P E + Y+ ATK G V++ ++D+ + + Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIDEYKEGQ---YLFMATKKGLVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ Q+ DI+L TK GQC+RF +R GR S+GVRG++LA Sbjct: 640 TGLAAITLREEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRA-TGRTSMGVRGMNLA 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ M LH + Sbjct: 699 DRDEVVGMQ--LHTQGTH------------------------------------------ 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRT+ +F NR GKG++ +++ + G +V V VN++ Sbjct: 715 ---------LLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITE--KTGNVVGVKAVNED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++I++++ +G +IR+ N I + R T GV + + + V S+ ++RE+E Sbjct: 764 NEIMIINTEGIVIRMECNSISVLGRITSGVKLINLNDNATVASIAKVRETE 814 >gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] Length = 878 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/890 (41%), Positives = 547/890 (61%), Gaps = 83/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM Q+W++R LI+GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL K+TVD N+D + QEP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNPDID D LM+ I PDFPTGA I G G+K+AY TGRG IV+R + Sbjct: 192 GEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIYGIQGVKDAYETGRGRIVVRATAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +S + ++IV+TEIPY VNK ++ IA+L +E R+ IA++ DES RQG R+V+++K Sbjct: 252 IE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDESGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRT++ Sbjct: 311 RDANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 371 ELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL + + NE N L I IL+ Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT I + ED + +V+TVSHLGY+KR PLS Sbjct: 465 LCKKVMKDELNEVKEKYGDARRTMIKPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G RD+DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FREQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ +++ + D NN YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ + DE++ V N++++ + G+ VRF + IR GR S GVRG+ L +GD Sbjct: 645 IAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTM-GRTSTGVRGMRLDEGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV++ D E+ T Sbjct: 704 DAVVGMIVVN------------------------DPEKET-------------------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE+G+GKR+ D+R++ R GKG++ +++ ++ G LVA+ V D++ + Sbjct: 720 ------VMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNIT--DKTGRLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 ++++ G +IR+ V + R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 772 MIINQSGIVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925] gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925] Length = 849 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/894 (42%), Positives = 549/894 (61%), Gaps = 87/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Y K A Sbjct: 7 IVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RYTE ++ Sbjct: 67 RIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAKM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 127 TKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G IDNPDI + LM I+GPDFPT +I+G++GI+ AY TGRG +++R + Sbjct: 187 TEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVILRSKAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G R +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+VIELK Sbjct: 247 IEEEKG-RSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LNQLY++T +Q F + M+AL +P+ +L +LK ++ F+EEV+ RRT++ Sbjct: 306 RDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEEVITRRTQF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ ++DEV+++IR S AR LM R Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFG------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q AIL+++L RLTGL R+ I E L IK ILS +S Sbjct: 413 -------------LSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKS 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 LL IIK EL +K + RR+ I++G D++ ED I +D+V+T++H GY+KR+P+ Sbjct: 460 LLLKIIKDELNEIKVKYGDERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIKRLPVE 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQ+RGG+G + +++DFV + STH ++LFF++LG VY+ K +++P A+ Sbjct: 520 TYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTAK 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G LIN++ L++ E+I ++ E + +++ TK G +++ L + I ++G Sbjct: 580 GMNLINLIPLDKEEKIQNVIYLKEFKKDK---FLIMGTKKGLIKKTSLDKYASIRKNGLN 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++S T + +I+ TK G +RF + +R GR + GV+ I+L + D+ Sbjct: 637 AINLREDDELVSARVTTGDCNIIYATKNGYAIRFHENDVRPM-GRTATGVKAITLREDDE 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+SM + SE R Sbjct: 696 VVSMEVA--------------------------------------------SENRD---- 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L VSE G+GKRT + + R GKG+ +S+ + G L+ V D D+++ Sbjct: 708 -----FLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISE--KTGLLIGARSVEDQDELM 760 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 L++D G IR+ V++I SR GV + T +E+VV++ ++ SE D+ + Sbjct: 761 LINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENEDDCNN 814 >gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] Length = 870 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/738 (50%), Positives = 505/738 (68%), Gaps = 15/738 (2%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E K I V++ DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Sbjct: 3 EFAKEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ G+V+GKYHPHG++A+YDA+ RMAQ +S+R +L +GQGNFGS+DGD PAA RY Sbjct: 63 YKKSARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ + A LL D+ K+TVDF NYDGS EP VL +++PN+LVNG GIAVGMATNI Sbjct: 123 TEVRMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV++ CVA+ID+P+I ++ LME + GPDFPT +I G G++ AY TGRG ++I Sbjct: 183 PPHNLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGIINGVEGVREAYRTGRGRVLI 242 Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 R SH+E G RE IVVTE+PYQVNKA + EKIAELV+EKRI I++LRDESD+ G R Sbjct: 243 RARSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG A+V+LN LY +T +Q++F +N+VAL +P+ L +L++F+ R EVV Sbjct: 303 LVIELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQPKVLDLRQVLESFLRHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR +PNP A+ L+ RSW + D Sbjct: 363 TRRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSD 422 Query: 430 LIDLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 ++D S+ Y +G DG LSE Q +AIL+LRL RLTGL +D I +E L Sbjct: 423 MLDRAGASASRPEDLAADYGVGDDG-YRLSEAQAQAILDLRLHRLTGLEQDKILDEYREL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I++ LDIL S RL I+ ELL+V ++ RR+ I E ++ ED I ED+VV Sbjct: 482 LDLIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVV 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GYVK P++ YRAQRRGG+G++ ++EDFV L + +TH +VL FSS G VY Sbjct: 542 TLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+ LP GS +RGK ++N+L L ERI I+P E + YV T G V++ Sbjct: 602 LKVYELPQGSRASRGKPIVNLLPLEADERINAILPVREYDPDH---YVFMVTARGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L+DF + +G IA+ L D ++ V + D++L T G+ VRF + +R GR Sbjct: 659 PLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPM-GRT 717 Query: 721 SVGVRGISLAKGDQVISM 738 + GVRG+ + +VI++ Sbjct: 718 ACGVRGVRMESDHRVIAL 735 >gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] Length = 845 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/902 (41%), Positives = 554/902 (61%), Gaps = 85/902 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD N+D + +EP VL R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G +A I+N DI++D LM+ I PDFPTG I G G++ A+ TGRG +V+R Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIYGYDGVREAFKTGRGRVVLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ G RE I+V+EIPYQVNKA M++K A+LV EK+I IA +RDESDR+G R+V Sbjct: 243 AKAIIEEVKG-RECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN L++YT+LQS FSVN +AL +PE L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGRPEMLNLKDMIHHFVDHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DRAH+L GL IA N+DEV+ +IR S N E AR++L+ R Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D +R E L I++ DIL Sbjct: 411 ---------------FELTEIQARAIVEMRLRQLTGLEQDKLREEYEELLKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + IIK+EL ++ + RRT I D+ D I E +V+T+SH GYVKR Sbjct: 456 ARKERRMDIIKEELEEIRAKYGDERRTDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG G+ G R+EDF+ LF+ + H ++FF+ G + +V+ +P GS Sbjct: 516 SLMEYKTQNRGGVGQKGSTTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L+ + T ++ ++L K G+ +RF R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+VI M V ND Sbjct: 695 ADDNDEVIGMVAV-----------------------------------NDP--------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E +L VSE G+GKR+ D+R++NR GKG++ V++ + G LVA+ V Sbjct: 711 --------ESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTE--KTGNLVAINNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D D +++++ G IR+ V+E+R+ RAT+GV + + K + + +V ++++ E E + Sbjct: 761 DEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLKKGDTIAAVTKVKKDEDDIEGDD 820 Query: 909 TE 910 TE Sbjct: 821 TE 822 >gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius] Length = 858 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/887 (43%), Positives = 546/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + V Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSKAAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG++++YDAL RMAQ +S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKEAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E N L I I E IL Sbjct: 414 ---------------FNLSHIQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L IIK+EL +K++ PRRT I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIKEELTEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y QRRGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P + DES + F T++G V+R LS+F I Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVKRTSLSEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + T L+ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKIATPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I V+ AD V NI Sbjct: 694 K-----IDTDFVVDAD-----------------------------------VINNI---- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EQ ILTV +KG GKRT+ ++R++NR+G G+ A +S + G +V V+D Sbjct: 710 -------EQEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV + IR A R T GV+I + KD++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAK 807 >gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] Length = 833 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/877 (43%), Positives = 550/877 (62%), Gaps = 88/877 (10%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI G Sbjct: 11 NIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKKSARIVG 70 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +V+ KYHPHG++++YDA+ RMAQD+S R L++G GNFGS+DGD AA RYTE R+ K A Sbjct: 71 DVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARMSKLA 130 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 ++ D+ K+T+DF+PN+DG EPVVL AR+P++LVNG GIAVGMATNIP HNL EV+ Sbjct: 131 MEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPHNLTEVI 190 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 + C+A ++NP+ID+ LME I+GPD PTGA+ILG GI+NAY TG GSI++R I + Sbjct: 191 NACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSKCEIIEG 250 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G + I+VTEIPYQVN+ ++EKIAELV+EKR+ I DLR+ES+R+G R+VIEL++ + Sbjct: 251 HGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVIELRKDVN 310 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN L++ T LQ + +NM+AL +P+ L I+ A++ + EV+VRRT++ LNK Sbjct: 311 PQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVRRTQFDLNK 370 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A DRAH+L G IA+ ++D ++ IIR S N E A L +LI + S+ Sbjct: 371 AEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEA----------------LNNLISEFSF 414 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 SE Q +AILE+RL RLTGL RD I +E +L I + DIL++ R+ G Sbjct: 415 ----------SERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHG 464 Query: 500 IIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ EL V + RRT IV G D+EDED I E +++T+++ GY+KR P+S YR+ Sbjct: 465 IIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQPISTYRS 524 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG+G G+ D+D+V +L STH +LFF++ G VY++K + +P A+G + Sbjct: 525 QNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRTAKGLPI 584 Query: 619 INILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +NI+ + Q E I+ I+P E +N N ++ FAT+ G V+R LS F I +G IA+ Sbjct: 585 VNIIEIAQDEEISAIIPVKE----FNENEFLFFATRTGVVKRTTLSAFGNIRTNGLIALS 640 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE++ V T NDI++ + G+ V F +R GR + GVRGI+L +G+ + Sbjct: 641 LREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSM-GRTAAGVRGINLEEGEVAVG 699 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M IV TE+ Sbjct: 700 MEIV---------------------------TED-------------------------- 706 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q IL VSEKGFGKRT ++R ++R GKG++ +++ N G+LVA+ V + +++V+ Sbjct: 707 QEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKN--GSLVAMKTVTGEEDLLIVT 764 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +KG +IR P+++I RAT+GV + D+ V SV Sbjct: 765 NKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSV 801 >gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] Length = 822 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE VD V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIYKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S E A+ ELM + Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPDRVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+ G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVDSERS--DDAYLFFTTRAGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TKLG VRF S +R + R++ GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V+ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKN--GPLAGLLTVTGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++DKG +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 >gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] Length = 833 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/889 (43%), Positives = 544/889 (61%), Gaps = 92/889 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I DEM+ SY+ YA++VI+GRAIPD+RDGLKPVHRR+LF M +MG WNK Y K ARI Sbjct: 12 VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+++GKYHPHG+AA YD + R+AQD+S+R LI+GQGNFGS+D DPPAA RYTE R+ + Sbjct: 72 GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +L DL KDTVDF PNYD S EP +L +R P +L+NG GIAVG+ATNIP HN+ EV Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + G +A+I NP++ L+ +M+ I GPDFPT I GR GI +AY TGRG I +R IEK Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRAKVVIEK 251 Query: 259 TS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 DRE IVVTEIPYQVNKAA++EKI+ELV+EK+I I+DLRDESDR+G R+VI+LKR Sbjct: 252 NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKRD 311 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +++VILNQLY++T ++S F + M+A+ +P F LI ILK+F+ FR+ V+VRRT + + Sbjct: 312 ENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTFEV 371 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NKAR+RAH+L GL IA+ N+DEVV +I+ S +P+ A L R Sbjct: 372 NKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSR----------------- 414 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+++Q RAIL++RL RLTGL + I+ E ++L EI+ IL ++ Sbjct: 415 ---------FSLTDIQARAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKV 465 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L +I E+ + D RRT IV D++ ED I E+MVVT S GY+KR P S+YR Sbjct: 466 LEVIISEMEEIIDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYR 525 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGG+G+ G++ ++ED V LFI STH VL F++ G +Y KV+++P A+GK Sbjct: 526 TQRRGGRGKVGMMTKEEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKP 585 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N++++ ER+ ++P S V+ AT+ G V++ L+ + G IA+ Sbjct: 586 IVNLINIGPDERVAAVLPV---RSFEEGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALS 642 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 +D DE++ V+ + D+ L T+ G+ +RF IR GR + GVRGIS+ D VI Sbjct: 643 IDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRTM-GRTARGVRGISMDSDDAVIG 701 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M I +A +SE+ C Sbjct: 702 MDIPREGNAIV-----------------------------------TVSEKGC------- 719 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPVNDNDQIILV 856 GKRT+ ++R+ R GKG+ +I G LVA + V + ++L+ Sbjct: 720 -----------GKRTAVSEYRLQKRGGKGMINL---RIVPKGGLVADILQVTGEEDLLLM 765 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVER-IRESE 901 S+ G +IR+ V ++ + R T+GV + +E++V S ER +RE E Sbjct: 766 SNSGKIIRMKVEDVPLIHRVTQGVKLIELDAEEQLVGMTSAEREVREEE 814 >gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4] Length = 805 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/875 (42%), Positives = 545/875 (62%), Gaps = 88/875 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI GEV+GK Sbjct: 1 MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+Y+++ RMAQ+++ R +L++G GNFGSVDGD AA RYTE R+ K + L+ Sbjct: 61 YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDT+D++ NYDG +EP VL AR+PN+LVNG GIAVGMATNIP H LGE++DG +A Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 + N DI + LME I GPDFPT +I+GR+GI+ AY TG+GSI++R IE+ S +E Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R+VIE++R A+A+V+L Sbjct: 241 TIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQ+ F +NM+AL +P+ L L ++ ++ V+ RRT+Y L KA RA Sbjct: 301 NNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + A+ LM + Sbjct: 361 HILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQ------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q +AIL++RL RLTGL R+ I E +L I E IL+ ++L II++E Sbjct: 397 --FNLSEKQAQAILDMRLQRLTGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREE 454 Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 LL +KD + RRT IV G+ ++EDED I RE++V+T++H GY+KR+P S YR+Q+RGG Sbjct: 455 LLEIKDRFNDVRRTEIVAGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ D+DFV L STH ++LFF++ G Y+ K + +P + A+G +IN+L Sbjct: 515 RGVQGMGTNDDDFVEHLLYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLG 574 Query: 624 LNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + + E I T++ E DE S Y+ F T+ G +R +SDF I +G IA+ L D Sbjct: 575 IEKDEWINTMIRIEEFDEES----YLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDD 630 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E++SV+ + IL+ TK G +RF +R GR + GV+GI+L D+V+SM I+ Sbjct: 631 ELISVKLTDGDKQILIGTKNGLLIRFDEKDVRSM-GRTATGVKGITLVNDDEVVSMEIIE 689 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 D +L Sbjct: 690 EDD-----------------------------------------------------HVLV 696 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +++ GFGKRT + ++R+ +R GKG++ +++ N G LVAV V + ++L++ G L Sbjct: 697 ITKHGFGKRTPASEYRLQSRGGKGLKTCNITDKN--GPLVAVKSVTGEEDLMLITVHGVL 754 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 IR+ ++ I I R T+GV + S ++E V + ++ Sbjct: 755 IRMDIHAISITGRNTQGVKLISLREEEYVATAAKV 789 >gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334] gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334] Length = 821 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/901 (41%), Positives = 561/901 (62%), Gaps = 86/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF S +R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMS-RGATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G+L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GSLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAEST 909 + +++++D G +IR V I R+T GV + +D ++V+ + E E V T Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEKEEVGTENET 817 Query: 910 E 910 E Sbjct: 818 E 818 >gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564] gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564] Length = 822 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 559/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609 >gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] Length = 855 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 563/905 (62%), Gaps = 87/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821 Query: 906 AESTE 910 +T+ Sbjct: 822 NSNTD 826 >gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/897 (41%), Positives = 565/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+ + + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ +IS D E Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901] gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901] Length = 856 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/914 (43%), Positives = 552/914 (60%), Gaps = 81/914 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K Sbjct: 6 KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+QK +H LL DL K+TVDF PNYDG+ Q P VL R PN+L+NG GIAVGMATNIP H Sbjct: 126 RMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV+ GC+ +I+NP +D L+E I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 186 NLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGIINGRAGILMAYRTGRGRIYVRAK 245 Query: 254 SHI---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + + EKT +R+ I++ EIPYQVNKA ++EKIAELV++K+I I+++RDESD+ G RV Sbjct: 246 AEVVTDEKT--NRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KRG DV+LN LY T LQS+F +N+VAL +P+ L +L+ F++ R EVV Sbjct: 304 VIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQPKVLNLKQMLEHFISHRREVVT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YLL KAR+R HVL GLA+A+AN+DEV+ +I+ S P AR L+ R W + I Sbjct: 364 RRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTISQF 423 Query: 431 IDLI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++ DD G DG +LS Q +AILELRL RLTG+ D + E Sbjct: 424 LERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEKLQ 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I E L+ILS+ RL+ +I++EL +V E RRT I D+ ED I ED VVT+ Sbjct: 484 QISEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL Y+AQRRGG G++ ++DEDFV L I +TH +L F++ G V+ K Sbjct: 544 SHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFWLK 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 V+++P+ Q+RG+ ++N+L L +GERIT+I+P F ED ++V AT G V++ Sbjct: 604 VYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDR------FIVMATSQGTVKK 657 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS F + G A+ L D ++ + DI+L + G+ RF +R GR Sbjct: 658 TPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSM-GR 716 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 S GVRGI +A +VI+M I AD + + ++ +R D ++ + Sbjct: 717 TSRGVRGIRMADEHRVIAMVI----PADGGKVLTVSENGYGKRT----DVDDFPT----- 763 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 KG G + ++S R+G + A + +E+ Sbjct: 764 --------------------------KGRGSQ-GVIAMQVSERNGGLVGAVQIFDGDELM 796 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + +DQ LV +G +E+ + SR T+GV + + E +V V RI E Sbjct: 797 MI--------SDQGTLVRTRG-------DEVSLLSRNTQGVRLIKVRESEHIVGVARIAE 841 Query: 900 ---SEIVDEAESTE 910 + DE ES E Sbjct: 842 QLDQDADDETESNE 855 >gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 835 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/890 (41%), Positives = 545/890 (61%), Gaps = 90/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID N + ++ +++I++GPDFPTGA+ILG GI+ AY TGRG I + Sbjct: 189 REVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G R+ Sbjct: 249 RAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+V+LNQLY++T LQ F V M+AL +P+ ++ +L ++ +EEVV Sbjct: 309 CIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLRHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ L++ Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++VQ +AI+++RL LTGL R+ + NE L I E I Sbjct: 418 ---------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L + + RRT I LD+ ED I +D+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ +ED+V +LF+ STH ++FF++ G VY+ K + +P Sbjct: 523 MTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT ++P E E Y+ ATK G V++ ++D+ + + Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGK---YLFMATKKGLVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E DI++ TK GQC+RF +R GR S+GVRG++L+ Sbjct: 640 TGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS-TGRTSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M LH DY Sbjct: 699 DRDEVIGMQ--LHTQGDY------------------------------------------ 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L SEKG GKRT+ +F NR GKG++ +++ + G ++ V VN++ Sbjct: 715 ---------LLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE--KTGNVIGVKAVNED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++I++++ +G +IR+ I I R GV + + + +V S+ ++RE+ Sbjct: 764 NEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAKVRET 813 >gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 826 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 11 EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 70 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD AA R Sbjct: 71 PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 130 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ K+T+D+ PNYDG QEPVVL AR+PN++VNG GIAVGMATN Sbjct: 131 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 190 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +I+NPD+ LM I+GPDFPTGA ILGR GI+ AY+TGRGS+ Sbjct: 191 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 250 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 251 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 309 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN L+++T+LQS F + +AL +P+ L +L ++ + V+ Sbjct: 310 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 369 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM++ Sbjct: 370 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 420 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L +I E Sbjct: 421 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 463 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II +EL ++ RRT I G +EDED I RE++V+T++H GYVK Sbjct: 464 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 523 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGG+G G+ ++ DFV LF+ ++H ++FF+ G VY+ K + +P Sbjct: 524 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 583 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++P ES ++ FAT+ G V++ L D+ I Sbjct: 584 GRTARGTPIINLIQIEQGETVNAVIPIESFESGH---FLFFATQQGIVKKTPLKDYNNIR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ +I++ T+ G + FP +R GR + GV+GI Sbjct: 641 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGI-- 697 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 H+S ++D+ ++ +I +E Sbjct: 698 ---------------------------HIS----------------EDDAVIDMDIVDE- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L V+ KGFGKRT ++RI R GKGI+ +V+ N G +V + V + Sbjct: 714 -------NNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 764 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ +++++ GT+IR ++ I I R T+GV + +T +D+ V +V R+ Sbjct: 765 DEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATVTRV 812 >gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597] gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597] Length = 822 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 558/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609 >gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8] Length = 888 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/917 (41%), Positives = 564/917 (61%), Gaps = 62/917 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A Sbjct: 5 VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244 Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G RV Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+EVV Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + + Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424 Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 +D +ID + Y + + T Y LS Q AIL+++L RLTGL +D + Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED I Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F++ Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G V++ + + +PI S ++G+ L+N+++L E +T I+P + DE+S +V FAT Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLKDENS----FVFFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF +I Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R + R + GVRG M + L A D +E + +S + Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 SL + K+ IL E GFGKRT D+ R GKG+ A S Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866 Query: 894 VERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 867 MACVEHDD--DEIEESE 881 >gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] Length = 872 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/893 (42%), Positives = 548/893 (61%), Gaps = 56/893 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 QALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG VAVI NP+I LM+ I GPDFPTGA ILG IK AY TGRGSI +RGV+ Sbjct: 188 LGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +IE + DRE I++TE+PYQ NKAA++EKIAELV EKRI IAD+RDESDR G R+ Sbjct: 248 NIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ TL L F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRIESIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+++LD ++ +IR + + TA+ EL+ Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELIT----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSEVQ AIL+++L RLT L D IR E L +I + DI Sbjct: 417 ---------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+L II+ E+ +K TPRRT I ++++ D I E ++ ++ GY+KR Sbjct: 462 LARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + AQ R +G++ ++D+D + H SVLFFS G VY K +++P+ S Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG ++ +L + + E+IT+I+P E S Y+V TK GN+++ +L+ F I Sbjct: 582 RTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSNIRA 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D++ V E+ I++ ++LG + F + ++ GR + GV+ + L Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD+++ M I+ A D ++ + D ++I + +++VE E Sbjct: 699 KKGDELVGMDILPAAILDT---------LNTE----EPDIDDIETEDIETAVETTEVLET 745 Query: 790 CQELKLKE--------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + L+ E ++L ++ G+GKR FR+ NR+G+G+ AT L Sbjct: 746 LENLEAVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKL 805 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + VN +++I++V+++G +IR VN I I SR+ GV + +D+ + V Sbjct: 806 ATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 858 >gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] Length = 813 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/879 (43%), Positives = 548/879 (62%), Gaps = 87/879 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++I DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRI + M ++ ++NK Y K A Sbjct: 3 LKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YDAL RMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 63 RIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVRM 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + H + D+ K+T+ F+PNYD + EPVVL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 123 NRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ G +A++D+PDI + LM I GPDFPT I G GIK+AY TGRG+I +R Sbjct: 183 RELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARVE 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ SG R +++TE+PYQVNKA +LE+IAELV++K+I I D+RDESDR+G RVV+ L+ Sbjct: 243 VEE-SGRRNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTLR 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G VI NQLY++T+L+S F V M+A+ KPE L G+L F+ FR V++RRT+Y Sbjct: 302 QGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A RAH+L GL A+ +LDEV+ +IR + P A++ LM+R Sbjct: 362 ELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S+VQ +AILE+RL RLTGL R+ I E + EI+ ILSS + Sbjct: 407 -----------FEFSDVQAQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAA 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + +I++E+ + D+ R+T I+ ++ ED I E+MVVT+S GY+KR PLSV Sbjct: 456 LVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLSV 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKGR+G+ R+ED VT LF STH +L F++ G VY KV+ +P P A G Sbjct: 516 YRSQRRGGKGRTGMSTREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L + + ERI T++P E + + + V AT++G +++ LS + +G A Sbjct: 576 KAIVNLLPVQKDERIQTVLPVKEFKEGF---FAVMATRNGVIKKTDLSAYSNPRSTGIRA 632 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++SV +D+ L ++ G+ +R R GR S GVRG+ L G ++ Sbjct: 633 IVLDDDDELISVCVTDGSHDLFLMSRAGKSIRVNEREFRPL-GRVSRGVRGMKL-DGSRM 690 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + M ++ A Sbjct: 691 VGMDVIEEGKA------------------------------------------------- 701 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 IL ++EKGFGKRT++ ++R +R GKG+ V++ N G++V V +++QI++ Sbjct: 702 ----ILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERN--GSVVGFRQVGEDEQILM 755 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++D G LIR+PV +I R T+GV + + + E+VV V Sbjct: 756 ITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDV 794 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 7/116 (6%) Query: 788 ERC-QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E C ++L E+ ++T+S G+ KRT +R R GKG T +S E + ++F Sbjct: 486 ELCIEDLIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKG--RTGMSTREE-DLVTSLFT 542 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 + +D +++ +++G + + V EI + G V + KDER+ +V ++E Sbjct: 543 ASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDERIQTVLPVKE 598 >gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis] gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1] gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14] Length = 814 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/897 (41%), Positives = 565/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+ + + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ +IS D E Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNGEAKIMTFALVDAAEIKEEKE 814 >gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] Length = 929 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 92/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK + K A Sbjct: 81 LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++A +L DL K+TVD +PNYD + EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV + +IDNPD+ + LME++ GPDFPTG +I+G GIK+AY TGRGSI +R H Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 320 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E T R+++VVTEIPYQVNK + EKIA+ V EK+I I+D+RDES+R+G R+VI+LK Sbjct: 321 VESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 380 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG V+LN LY+ T LQS F + +AL P +L IL+ ++ + +VV RRT++ Sbjct: 381 RGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTEF 440 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA R H+L GL AV N+DE+V IIR S + A+R + +R Sbjct: 441 DLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHER--------------- 485 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L ++Q AIL++RL RLTGL R D+ +E++ L +I D+L+ + Sbjct: 486 -----------FDLDDIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHEN 534 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L +I EL + + RRT+I + + +++ ED I EDMVVTV+H GYVKRVP+ Sbjct: 535 KILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 594 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +YR+Q+RGGKG GV +++ DFV +LF+ STH VLFF++ G VY+ KV LP+G+ + Sbjct: 595 IYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTK 654 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G A++N+LSL++GE+I ++ FP + Y++FATK G V++ +S++ + + Sbjct: 655 GNAIVNVLSLSEGEKIAAVITTRDFPAEN------YLMFATKQGMVKKTAMSEYDRTRKD 708 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+++V + ++L + G+ + F S R GR + GVRGI L Sbjct: 709 GIIAINLKQGDELVNVRRVHPGDKVILCSSDGKAILFDESQARAM-GRGTSGVRGIMLKG 767 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ M EIT+ D Sbjct: 768 EATMLGM--------------------------------EITNGNGD------------- 782 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + ++EKG+GKRT+ ++ R G+G+ ++ + G LVA V Sbjct: 783 --------LFVITEKGYGKRTAVSEYPEHKRGGQGVFT--ITMTAKKGKLVACRVVGPQH 832 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +I+++S++G +IRV +I R+T+GV + + D+ V ++ R+ Sbjct: 833 EIMIMSEEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIARM 878 >gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] Length = 820 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/891 (42%), Positives = 555/891 (62%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE+GI V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM +G Y Sbjct: 2 EERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ DL +DT+DF PNYDG QEP VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGEV+D +AV NPDI + LME I+GPDFPTG ILG++ IK AY TG G IV+ Sbjct: 182 PHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYILGKSAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G+++ I+VTE+PY VNKA M+EK+++LVR+K+I I ++RDES+R G RV Sbjct: 242 RAKTEIEE-KGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ TSLQ+ F N +AL +P+ L ++ ++ +EEV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMISLYLEHQEEVIR 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA DRAH+L GL A+ +D ++ +IR S + + LM+ +N SD Sbjct: 361 RRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLME-EFNMSD---- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 Q +AI E++L RL GL R I ++LN L I + DI Sbjct: 416 ---------------------KQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R RLL II EL +KD+ RRT I++G D+EDED I ED+++++++ GY+KR Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y++Q RGG+G G+ ++D V+ L +STH +LFF++ G VY+ K + +P Sbjct: 515 MPVDTYKSQNRGGRGIKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L L++ E I +++ + N N Y+ F TK G V+R +++F I Sbjct: 575 RSAKGLPVVNLLDLDKEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++ V+ + + IL+ G+ VRF S +R GR S GV+GI++ Sbjct: 635 QSGKIAICLKDNDQLVQVKLTSGNDQILIAASNGKLVRFEESNVRPM-GRISSGVKGINV 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D E+ + D EG Sbjct: 694 --------------------------------------DGSEVVGMTTDK--EG------ 707 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++IL V+E+G+GK + ++R+SNR GKG++ ++ N G +VA+ VN Sbjct: 708 --------KYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERN--GKIVALRAVNG 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ +++++D G +IR+P+ ++ A RAT+GV + ++ +V SVE + ++ Sbjct: 758 DEDLLIITDDGIMIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVEKA 808 >gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] Length = 869 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/892 (41%), Positives = 561/892 (62%), Gaps = 85/892 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + +E I ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM+ +G+ N Sbjct: 6 ENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGLANN 65 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGNFGS+DGD PAA Sbjct: 66 KPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFPAAM 125 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R QK A +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG GIAVGMAT Sbjct: 126 RYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVGMAT 185 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HN+ E ++ VA ID+ DI++ LM+ ++ PDFPTGA+I G TG++ A+ TGRG I Sbjct: 186 NMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIYGYTGVQEAFETGRGRI 245 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + IE T+ +RE I+VTEIPYQVNKA M+E+ AEL+ EK+I I++++DES++ G Sbjct: 246 VMRAKAEIE-TNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESNKDGI 304 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL +P+ L +++ FV R +V Sbjct: 305 RIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGRPQLLNLKDLIRHFVDHRHDV 364 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 VVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S PE AR LM++ Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQ-------- 416 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q RAIL++ L RLTGL RD I++E N L I+ Sbjct: 417 ------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQ 458 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL S+ + IIK EL +K++ RRT IV DM ED I ED+V+T+SH GY+ Sbjct: 459 SILDSKELRMQIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVITISHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P + YR Q RGGKG G R+EDF+ L + S H +LFF+ G + +V+ +P Sbjct: 519 KRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPE 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS ++G+A+ NI+++ + E+I + +D+ N Y++ TK G +++ L + Sbjct: 579 GSRLSKGRAIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYS 638 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G A+ ++ D++L T ++I++ + G+ +RF +R GR + GVRG Sbjct: 639 RPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-GRTATGVRG 697 Query: 727 ISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++LA D+V+ M I+ D +T Sbjct: 698 VTLAHDQDEVVGM--------------------------IAVDDPNVT------------ 719 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L VSEKG+GKRT D+R++NR GKG++ V++ + GALVA+ Sbjct: 720 --------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTE--KTGALVAIK 763 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D +++++ G +IR+ V+E+R+ RAT+GV + + ++ + SV +I Sbjct: 764 NVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVAKI 815 >gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase [Candidatus Kuenenia stuttgartiensis] Length = 838 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/900 (41%), Positives = 545/900 (60%), Gaps = 88/900 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I + I +EM++SYL+YA++VI+ RA+PD RDGLKP RRIL M + + K Sbjct: 3 ERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRAK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + KCA+I+G+ G YHPHG +Y L RMAQD++ R LI+GQGNFGS+DGDPPAA RY Sbjct: 63 FRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ +++DL K TVD+ PNYD + EPVVL +++PN+L NG GIAVGMAT+I Sbjct: 123 TEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATSI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN E+ DG VIDNP++ ++ LM +I GPDFPTGA I G +GIK Y TGRG+I++ Sbjct: 183 PPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGTSGIKEGYKTGRGTIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +H+E + R+ IVVTEIPYQ+N+ +LE+IA LVRE+ + I+D+R+ESDR G R+ Sbjct: 243 RAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSRL 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LK+G +V+LNQLY++T LQ FS+ M+AL +PE L +L ++ R+ V+V Sbjct: 303 VIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNRPETLNLKQMLICYIEHRKVVIV 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RT++LL KA++RAHVL GL IA+ N+D V+ +I+ S + ARR L+ Sbjct: 363 KRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLIS----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE+Q AIL++RL RLTGL + I E L +IKE I Sbjct: 412 ---------------TFSLSEIQANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +L IIK+++ +K++ RRT IV + D+E ED I E++ V +SH GY+KR Sbjct: 457 LANEKLVLDIIKKDVAEIKEQFGDKRRTEIVGAVGDLEREDLITEENVTVIISHEGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS YR Q+RGGKG G M++ DF LF+ STH +LFF+ G VY KV+ +P Sbjct: 517 LPLSAYRKQQRGGKGVIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMG 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +G+ALIN+L L +GE +T+ +P ++++ +V AT HG +++ L + + Sbjct: 577 KITKGRALINLLELKEGENVTSFIPV----RNFDDRQLVMATSHGIIKKTVLKAYGNPKK 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ LD D ++ V+ + D++L T+ G+ VRF +R GR S GV+GI L Sbjct: 633 GGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRFSEEDVRS-VGRVSRGVKGIKLK 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD+V M +V ++SS+ Sbjct: 692 NGDKVCGMVVV----------------------------------DDESSL--------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +T+ E GFGKRT+ ++ NR G+G+ ++ N G +V + V + Sbjct: 709 ----------MTICENGFGKRTNFEEYSAKNRGGQGVINIKTTERN--GKVVGLLDVRET 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908 D++I+++ G +IR PVN IRI R T+GV +F K ++++SV R+ E+ D+ E+ Sbjct: 757 DELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVARVIPEENPATDDLET 816 >gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] Length = 815 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ K+TVDF NYD S +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM R Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------YKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQRRGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + +N Y+ F T++G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAEHD--DNSYLFFTTRYGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK+G VRF S +R GR + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNM-GRAATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ ++ IS D E Sbjct: 693 AGDHVVGASV------------------------ISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ +R GKG++ ++++ N G L + VN + Sbjct: 709 ---------VLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKN--GPLAGLMAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + ++++++ G +IR V I RAT GV + K ++V+ Sbjct: 758 EDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVT 800 >gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] Length = 875 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 544/891 (61%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV +N+ Sbjct: 3 ESSGENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++++Y+ + RMAQ WSLR L++GQGNFGSVDGD PAA R Sbjct: 63 AHKKSARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A LL DL KDTVDF+PN+D S EP VL A++PN+LVNG GIAVGMATN Sbjct: 123 YTEARLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGEVVDG +A IDN +I + LME ++ PDFPTG +I G G+++A TGRGSI+ Sbjct: 183 MAPHNLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIYGYNGVRSAMETGRGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + E + REQI+VTEIPY +NKAAM+E+IA L+ +K++ I+D+RDESDR+G R Sbjct: 243 MRSKAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V +LK+ A +++LN L++YT LQ+ F VN VAL +P L ++K +V R V+ Sbjct: 303 IVFDLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGRPVLLNLKDLIKHYVDHRIVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A RAH+L GL IA+ NLD V+ +IR + +PETA+ LM++ Sbjct: 363 TRRTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQ--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q RAIL++RL RLTGL R+ I E + I I + D Sbjct: 414 -----------------FELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ R IIK EL +K+ RRT+I + DED I E+M++T+S GY+K Sbjct: 457 ILANEYRKYEIIKTELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS YR Q RGG G GV +D DF LF + +L F+ G ++ KV+ +P G Sbjct: 517 RTPLSEYRTQTRGGVGSRGVKTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEG 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+ + N++SL G+ I +++ DE NN Y++ T+ G +++ L + + Sbjct: 577 SKTSKGRPIQNLISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSR 636 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ ++ D +L+V +NDI++ + G+ VRF +R GR + GVRGI Sbjct: 637 PRTNGIIAISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPM-GRTAAGVRGI 695 Query: 728 SLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +L D +VI M +C IS Sbjct: 696 NLNDPDNKVIGM-------------VC-------------------------------IS 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E Q +L VSE GFGKR++ +R++NR GKG+ + + +++G LVA+ Sbjct: 712 REDAQ--------LLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNAT--DKVGKLVAIRE 761 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D +++++ G IR+ V +IR A R T+GV + + + + SV RI Sbjct: 762 VTEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSVTRI 812 >gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1] gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7] gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1] Length = 888 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/917 (41%), Positives = 564/917 (61%), Gaps = 62/917 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A Sbjct: 5 VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244 Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G RV Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+EVV Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + + Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424 Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 +D +ID + Y + + T Y LS Q AIL+++L RLTGL +D + Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED I Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F++ Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G V++ + + +PI S ++G+ L+N+++L E +T I+P + DE+S +V FAT Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF +I Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R + R + GVRG M + L A D +E + +S + Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 SL + K+ IL E GFGKRT D+ R GKG+ A S Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866 Query: 894 VERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 867 MACVEHDD--DEIEESE 881 >gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4] gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4] Length = 852 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/901 (40%), Positives = 560/901 (62%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 E 905 E Sbjct: 822 E 822 >gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244] gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244] Length = 909 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/896 (42%), Positives = 542/896 (60%), Gaps = 52/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+VI+N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 366 YELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G G +Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ ++N+L L E IT I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L+ F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ I + D + S I SL Sbjct: 719 RTAKGVRGMRVSFASNTIDVE---------DAEVENDDSDDNDDSSDSNVVSRIVSLVVP 769 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E +L G+GKRT DF R GKG+ A S+ N Sbjct: 770 ETGE-----------------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 810 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G L++ +++ +++L+SD GTL+R E+ R +GV + + E +V V Sbjct: 811 GELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGV 866 >gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A] gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A] Length = 855 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 562/905 (62%), Gaps = 87/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821 Query: 906 AESTE 910 +T+ Sbjct: 822 NSNTD 826 >gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453] gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453] Length = 832 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/891 (42%), Positives = 549/891 (61%), Gaps = 86/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE I I EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+ +K Sbjct: 3 EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A +L D+ K+T+DF PNYDG EPVVL ARYPN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG A+I NPDI LME I+GPDFPT ILGR GI+ AY TGRGS+ Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVR+KRI I DLRDESDR G R Sbjct: 243 MRAKATIEENN-NKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN LY++T++QS F +NM+A+ +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ +LDEV+ +IR S E AR L++R Sbjct: 362 RRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFG------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I NE L +I E + Sbjct: 415 -------------------LSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELRE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++ +L II EL +K+ RRT I G + DED I RE++++T++H GY+K Sbjct: 456 ILANEHLVLQIINDELQEIKERFSDERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P + YR+Q+RGG+G G+ + EDFV LF+ ++H ++FF+ G Y+ K + +P Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ + QGE I ++P E+ S N L+ FAT+ G V++ L D++ I Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPV-ENFDSDNFLF--FATRQGVVKKTPLEDYVNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ + +I++ T G +RF S +R GR++ GV+GI+L Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+VI M +V D + D Sbjct: 692 DDDDEVIGMDVV---DRELD---------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 IL V+ KG+GKRT + D+R R GKGI+ ++++ N G +VA+ V Sbjct: 709 ----------ILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + +++++ GT+IR + I R +GV + + +D+ V +V R +S Sbjct: 757 EEDLMIITSSGTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKS 807 >gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum MolK2] gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum MolK2] Length = 842 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/867 (42%), Positives = 540/867 (62%), Gaps = 67/867 (7%) Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 +HRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L+ Sbjct: 1 MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 +GQGNFGSVDGD AA RYTE RL K AH LL D+ K+TVDF PNYDGS EP +L AR Sbjct: 61 DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARI 120 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231 PN+L+NG GIAVGMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVRE 290 G +G++ Y TGRG +V+R +H E G R+ I+V E+PYQVNK +LE+IAELV E Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTE 240 Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 KR+ I+D+RDESD+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPR 300 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 L +L+ F+ R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P Sbjct: 301 LLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTP 360 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTR 455 A++ELM RSW++ ++D++ + + + + DG LS+ Q + Sbjct: 361 PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQ 420 Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515 IL++RL RLTGL +D I E + +I + LDIL+ R+ II +EL ++ E Sbjct: 421 EILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDE 480 Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 RR++I +++ ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D Sbjct: 481 RRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDD 540 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635 ++ LF+ +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P Sbjct: 541 WIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILP 600 Query: 636 FPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694 + DE +V AT G V++ L++F ++G IA+ LD D ++ + ++ Sbjct: 601 VKQFDEQH----FVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQH 656 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 D++L + G+ VRF + +R GR + GVRG++L +G QVI+M + A A+ Sbjct: 657 DVMLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE------- 705 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 T+ + + +V G+ +LT +E G+GKRT Sbjct: 706 ------------------TAGEGEQAVAGS---------------VLTATENGYGKRTPI 732 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 ++ R KG+ A S+ N G +VA V D+I+L++ G LIR V+EIR Sbjct: 733 SEYTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMG 790 Query: 875 RATKGVVIFSTAKDERVVSVERIRESE 901 RAT+GV + + + ++ ++R+ ES+ Sbjct: 791 RATQGVTLIAVGEGNKLSGLQRVVESD 817 >gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] Length = 822 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/901 (41%), Positives = 549/901 (60%), Gaps = 86/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +E+ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G ++N+L +++GE + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV D + KN + Sbjct: 692 ITLGDEDQVVGMEIV------------------------EEDMNVLIVTKNGYGKRTPVD 727 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E R Q +R GKG++ +++ N G LVAV Sbjct: 728 EYRLQ-----------------------------SRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ E D + Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEEDGS 816 Query: 907 E 907 E Sbjct: 817 E 817 >gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143] gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143] Length = 827 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKR+ I +RDES+R+G R V Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 307 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 367 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 416 ---------------FRLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 461 VKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 521 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 581 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 639 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 698 EGDTVVGASVI----TDQDE---------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 714 ---------VLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKN--GPLAGLLTVKGD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 763 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 813 >gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH] gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH] Length = 816 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/900 (42%), Positives = 559/900 (62%), Gaps = 94/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI + + SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ Y K A Sbjct: 3 VIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+AL RMAQ +S+R+ LI+GQGNFGS+DGD AA RYTE RL Sbjct: 63 RIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARL 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D + +IDN D L+ +++ ++GPDFPTG I G++GI AY TGRGSI IR H Sbjct: 183 EELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAKHH 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++E IV+ E+P+QVNKA ++EKI++LV++K + I+++RDESDR+G RVVIELK Sbjct: 243 IEH-KGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A +++ILN LY++T +Q F +NM+ + +P+ F L +L F+ R+ VV+RRT Y Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTIY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+ L+ R Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L++VQ +AIL++RLARLT L + + NE L +I+ IL + Sbjct: 407 -----------FELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDEN 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L G+IK ELL +K + TPR T I E ++ ED I E+MVVT++H GYVKRVPL Sbjct: 456 ILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKA 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ + + ++DF+ D ++ ++H +++ + G ++ KV+R+P GS ++G Sbjct: 516 YERQNRGGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKG 575 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KA++N+++L++ E+I TI+ + DES + F TK+G V+R LS+F I +G Sbjct: 576 KAIVNLINLDKDEKIQTIIKTEDFDESKS----LAFFTKNGIVKRTNLSEFKNIRSTGVR 631 Query: 675 AMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ +D DE+++ + + ++ + TK G +RFP+ +R GR + GV GI +G Sbjct: 632 AITIDEGDELVTAKIVEPGDKELFIVTKKGMAIRFPVDTVREM-GRTARGVTGIRFKIEG 690 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ A+ L DE Sbjct: 691 DEVVG-ALALQ-----DEN----------------------------------------- 703 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 Q ILT+SEKGFGKRT + +R++NR GKG+ A ++ N+ G LV V + Sbjct: 704 -----QEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEKDHD 756 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-----ERIRESEIVDEAE 907 +++++ G +IRV ++ I + T+GV + ++VVS+ E+ E + D+ E Sbjct: 757 LMVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEEEGTLFDDEE 816 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/166 (22%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 750 ERICYMKHMSAQRRLISG-DTEEITSLKND------SSVEGNISEERCQELKLKEQFILT 802 E+I Y+ + +++G +E+ +K +++E + ++L E+ ++T Sbjct: 442 EKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVT 501 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 ++ +G+ KR + NR GKG +A I E + + N +D +++++D+G L Sbjct: 502 ITHRGYVKRVPLKAYERQNRGGKGKKAL---TIYEDDFIEDFYVANSHDTLMIITDRGQL 558 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + V I SR +KG I + ++ ++ I ++E DE++S Sbjct: 559 HWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQTIIKTEDFDESKS 604 >gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13] gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13] Length = 763 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/842 (43%), Positives = 529/842 (62%), Gaps = 86/842 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ + Y Sbjct: 5 EGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGYR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD AA RYTE Sbjct: 65 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A +L D+ K+TVDF PN+DG +EPVVL +RYPN+LVNG GIAVGMATNIP Sbjct: 125 AKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +A+IDNP++ LM I+GPDFPT +I+G++GI+ AY TG+G IV+R Sbjct: 185 HNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ +G R +I+VTE+PYQVNKA ++E IA+LV++K+I I+DLRDESDR+G R+VI Sbjct: 245 KAEIEEENG-RHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V LN LY++T +Q F V M+AL +P+ L +L ++ F+++V+ RR Sbjct: 304 ELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA++RAH+L GL IA+ N+DEV+ IIR S E A+ L++R Sbjct: 364 TQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AILE+RL RLTGL RD I NE N L I IL+ Sbjct: 412 --------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S RLL +IK+ELL +K + RRT+I + +++ ED I ED+V+T++H GY+KR+ Sbjct: 458 SEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRIS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 VY AQ+RGGKG + +++DFV ++ + STH+++LFF++ G VYK K + +P Sbjct: 518 SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRT 577 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+NIL L E+I T++ F + + Y+ TK G V++ L DF I ++G Sbjct: 578 AKGTNLVNILPLEADEKIQTVLSFKDVQEDG---YLFMGTKLGIVKKTPLKDFKNIRKNG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE+L + + DI+ T+ G +RF + +R GR + GV+ ISL +G Sbjct: 635 LIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLREG 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M I + DE+ Sbjct: 694 DVAVCMDIAVE-----DEK----------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L VSE G+GKRT+ ++++ NR G G+ VS ++ G +V ++D+ Sbjct: 708 -------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDDE 758 Query: 853 II 854 ++ Sbjct: 759 LM 760 Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 16/161 (9%) Query: 747 DYDERICYMKHMSA----QRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLK 796 +Y+E + + +++A + RL+ EE+ +K S +E +E ++L + Sbjct: 441 EYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQE 500 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ G+ KR SS + R GKGI+A +K ++ V V + N ++ Sbjct: 501 EDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAM-TTKEDDFVENVLVTSTHSN--LLFF 557 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 + KG + ++ E+ A R KG V I DE++ +V Sbjct: 558 TTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598 >gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503] gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7] gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503] gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] Length = 870 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y K A Sbjct: 7 IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+PTHNL Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++RG + Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+V+++ Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+RRTK Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q RAI+E+RL +LTGL +D +R E + I +IL + Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR PLS Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ A+ Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+A+ N+L++ +++ + D N+ Y++F TK G +++ L + + ++ Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G++L + Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698 Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M IC Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709 Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +K KE + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ V Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904 D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ E EI + Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824 Query: 905 EAESTE 910 + E Sbjct: 825 QKAEQE 830 >gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] Length = 870 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y K A Sbjct: 7 IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+PTHNL Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++RG + Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+V+++ Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+RRTK Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q RAI+E+RL +LTGL +D +R E + I +IL + Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR PLS Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ A+ Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+A+ N+L++ +++ + D N+ Y++F TK G +++ L + + ++ Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G++L + Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698 Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M IC Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709 Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +K KE + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ V Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904 D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ E EI + Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824 Query: 905 EAESTE 910 + E Sbjct: 825 QKAEQE 830 >gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5] gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5] Length = 928 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/932 (40%), Positives = 547/932 (58%), Gaps = 99/932 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M + ++NK Y K Sbjct: 3 ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR +++GQGNFGS+D DPPAA RYTE Sbjct: 63 SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H +L DL KDTVD+ NYDGS + P VL AR PN+L+NG GIAVGMATN+ H Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A +NP I + LM I GPDFPTG +I GR GI +AY TG+G + +RG Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242 Query: 254 SHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE S DRE+IV TE+PYQ NKA ++E+IAELVR+K+I I ++RDESD+ G Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+EV Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI- 427 V RRT + LNKAR R H+L GL +A+AN+DE++ I+ S N AR L+ +W + + Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGSGSVV 422 Query: 428 ------------KDLIDLIDDSSY--TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 D I+ D + I + + LS Q AIL+++L RLTGL +D + Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLEQDKL 482 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E L EI IL +L+ II E++ ++D RRT I++ +D ED I Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + +V+TVS GY K P+ Y AQ+RGGKG+S M+++D + L + STH +VL F+ Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLIVTSTHATVLCFT 602 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP---EDESSWNNL---- 646 G V+ + + +PI S ARG+ L+N++ LN E +TTI+P P E+ SS Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVEELSSKGETSADV 662 Query: 647 -----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 +V FAT +G V+R +L F I +G IA+ L+ D+++S Sbjct: 663 TLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSARI 722 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 +++L G+ +RF + R GR + GVRG+ L + + S+ ++ Sbjct: 723 TNGSQEVMLFASSGKAIRFNETDARAM-GRTAKGVRGMRLTADEFIKSLVVI-------- 773 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E ++ E IL E GFG Sbjct: 774 --------------------------------EDDVRE------------ILIACENGFG 789 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT +F NR G G+ A S N GALV V+ D IIL+SDKGTL+R PV Sbjct: 790 KRTFIDEFNTQNRGGGGVIAIKTSTRN--GALVRATKVDSTDDIILISDKGTLVRTPVEH 847 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + + R T+GV + +KDE++V++ R+ E Sbjct: 848 VASSGRNTQGVTLIRLSKDEKLVAMARVEHEE 879 >gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] Length = 864 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/866 (43%), Positives = 545/866 (62%), Gaps = 44/866 (5%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GK Sbjct: 1 MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143 YHPHG+ A+YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYTECRLQ + LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG V Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259 A+I NP+I LM+ I GPDFPTGA +LG +GI+ AY TGRGSI +RGV+ IE + Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DRE I++TE+PYQ NKAA++EKIA++V EKR+ IAD+RDESDR G R+VIELKR + Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN LY+ T LQ+ F NM+AL KPE L L+ F+ FR E + RRT+Y L K Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A R H+L GL IA++ LDE++ +IR +P+ TA+ EL+ Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELI--------------------- 399 Query: 440 TIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T Y LSEVQ AIL+++L RLT L D IR E L +I + DIL+ R R+L Sbjct: 400 ------TNYGLSEVQADAILQMQLRRLTALEADKIRQEHEDLQTQIADLQDILARRERIL 453 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ E+ +K+ TPRRT I+ G ++++ D I E ++ V+ GY+KR+P++ + A Sbjct: 454 EIIETEIAQLKESFSTPRRTVILPGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEA 513 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q R +G++ ++D+D + H S+LFFS G VY K +++P+ S +RG A+ Sbjct: 514 QSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAI 573 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + +L + + E+IT+I+P DE S Y+V TK GN+++ +L+ F I +G IA+ L Sbjct: 574 VQMLPIPREEKITSIVPV--DEFSREE-YLVMLTKGGNIKKTELASFSNIRANGLIAISL 630 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVIS 737 + D++ V E+ IL+ ++LG + F + ++ R + GVR + L KGD+++ Sbjct: 631 EEGDQLRWVRRARVEDSILVGSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKGDELVG 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M I+ A D + + +A+ + + EI +++ + +VE EE + Sbjct: 691 MDILPAAILDT---LNTDEPETAEIEAVEIEAVEIEAVEIE-AVETENQEETAEVTSTGS 746 Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854 ++L ++ G+GKR FR+ NR+G+G+ AT L + V ND+D+I+ Sbjct: 747 IGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIM 806 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGV 880 +V+ +G +IR VN I I SR+ GV Sbjct: 807 MVTKRGIIIRQAVNAISIQSRSATGV 832 >gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] Length = 870 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/906 (41%), Positives = 564/906 (62%), Gaps = 93/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y K A Sbjct: 7 IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNGG GIAVGMATN+PTHNL Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+DGC+A ID DI+++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++RG + Sbjct: 187 SEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+V+++ Sbjct: 247 EIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDV 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A++ V+LN+LY+ T+LQS FSVN +AL +P L ++KAFV R EVV+RRTK Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA N+DEV+ II+ S +P+ A L++R Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q RAI+E+RL +LTGL +D +R E + I +IL + Sbjct: 412 ------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +IK ELL +KD+ R+T IV ++ ED ++M++TVSH+GY+KR PLS Sbjct: 460 DLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G G RDEDFV ++ S H ++LFF++ G Y KV+ +P G+ A+ Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAK 579 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+A+ N+L++ +++ + D N+ Y++F TK G +++ L + + ++ Sbjct: 580 GRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L D ++ V N++++ + G+ +RF SA+RV GR + GV+G++L + Sbjct: 640 GVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGMTLDE 698 Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M IC Sbjct: 699 DNTDEVVGM-------------IC------------------------------------ 709 Query: 790 CQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +K KE + +L VSE+G+GKR+S D+RI+NR GKG++ ++++ + G LVA+ V Sbjct: 710 ---IKDKEKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVT 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVD 904 D + +++++ G IR+ V ++ + RAT+GV + + K ++ + SV ++ E EI + Sbjct: 765 DENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEEIAE 824 Query: 905 EAESTE 910 + E Sbjct: 825 QKAEQE 830 >gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300] gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300] Length = 822 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ + D Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E I+T EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 >gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] Length = 834 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/893 (43%), Positives = 542/893 (60%), Gaps = 87/893 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I +E++ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++ ++NK Y K AR+ Sbjct: 11 VRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYKKSARVV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL RMAQD+++R L++GQGNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTEVRMAKL 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A+ LL D+ KDTVDF NYDGS +EPVVL + P +L+NG GIAVGMATNIP HNLGEV Sbjct: 131 ANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPPHNLGEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VA++DNPDI + LM + GPDFPT I G GI+ AY GRGSI IR ++IE Sbjct: 191 ARALVALLDNPDIGVRELMRHVPGPDFPTRGFIHGAEGIEQAYRDGRGSIQIRAKANIET 250 Query: 259 TSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + ++ I+VTE+PYQVNKA +LEK+AELV++K+I I+DLRDESDR G RVV +L+R Sbjct: 251 VARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRVVFDLRRD 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A V+LNQL+++T +Q+ F +NM+A++ +P L +L+ F+ R E+V+RRT + L Sbjct: 311 AVPQVVLNQLFKFTQMQTTFGINMLAIDRGRPRLMGLKDVLELFIEHRREIVLRRTAFDL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL IA+ NLDEV+ +IR + NP A+ LM R Sbjct: 371 AKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSR----------------- 413 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE Q +AILE+RL RLTGL RD I E + EI IL S + Sbjct: 414 ---------FSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKEIARLRHILESDEEV 464 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 II++E L + +E RRT IV + D+E ED I E+MVVT+SH GY+KR P S+YR Sbjct: 465 RRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVTLSHGGYIKRTPTSLYR 524 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQRRGGKG G+ +DEDFV DLF STH+ +L F+ G +Y KV +P +RGKA Sbjct: 525 AQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKA 584 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N++ + E ++T++ E V+ AT+ G +++ +L F + G IA+ Sbjct: 585 IVNLVQMLPDESVSTVLAVRE---FVEGRQVIMATQKGVIKKTELMSFSRPRAGGIIAIN 641 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L D ++S E ++ L T+ GQ +RF S +R GR + GV+GI Sbjct: 642 LAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSM-GRAAAGVKGI---------- 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 D ++D+++ M+ +V G + Sbjct: 691 -------DVEHDDQVVAME-----------------------AVAGAPT----------- 709 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +LT++E GFGKRT ++ NR+GKG+ + N G +V+ V D+D+++L++ Sbjct: 710 --MLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRN--GHVVSALVVGDDDEVMLIT 765 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D G +IR+ V I + R T+GV + ER+V+V R+ E DE E+ E Sbjct: 766 DVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVARLAEPGD-DEVEAGE 817 >gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] Length = 822 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ + D Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E I+T EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 >gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] Length = 821 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/904 (41%), Positives = 550/904 (60%), Gaps = 86/904 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +E+ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ + ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S A+G ++N+L +++GE + I+P E ++ ++ F TK G +R LS F Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIRE---FGDDQFLFFTTKQGISKRTPLSSFA 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ GV+ Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L DQV+ M IV D + KN + Sbjct: 692 ITLGDEDQVVGMEIV------------------------EEDMNVLIVTKNGYGKRTPVD 727 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E R Q +R GKG++ +++ N G LVAV Sbjct: 728 EYRLQ-----------------------------SRGGKGLKTCNITDKN--GKLVAVKS 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + I+L++ G +IR+PV++I R T+GV + ++ V +V + ++ E Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQKDEEDGSE 816 Query: 907 ESTE 910 E++E Sbjct: 817 EASE 820 >gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386] gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386] Length = 819 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/881 (43%), Positives = 547/881 (62%), Gaps = 82/881 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M ++G+ ++K Y K ARI Sbjct: 14 IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSARIV 73 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++A+Y A+ R+AQ+++ R LLI G GN+GS+DGD AA RYTE R+ K Sbjct: 74 GEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMAKI 133 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 ++ LL+D+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HN GEV Sbjct: 134 SNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAGEV 193 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG VA+I+NPDI +D L+ I GPDFPTG +I GR+GI AY TGRG + + G IE+ Sbjct: 194 CDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKIEE 253 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + +E I+V E+PYQVNKA ++E+IAELVR K++ I+DLRDESDR G RVVIELKRG Sbjct: 254 SKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELKRGE 313 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ILN LY+YT LQ+ F + +AL P L IL+ ++ R VV RRTK+ L+ Sbjct: 314 ESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTKFELD 373 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L G IA+ N+DEV++IIR S + A+ +LM Sbjct: 374 KAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLM-------------------- 413 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 SEVQ +AIL++RL RLTGL R I E L + I+E ILS ++ Sbjct: 414 ------AGFAFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIY 467 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK+E+ +K++ PRRT I + +++ ED I E++VVT++ GYVKR P+ VYRA Sbjct: 468 AIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRA 527 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGG G S + ++D + D++I S+L F++ G V+ KV+ +P S QARG+ + Sbjct: 528 QKRGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLI 587 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 NI+ L + E ++TI+ E E + + F T+ G V++ L F IN++G A+ L Sbjct: 588 SNIIKLQEDEMVSTIIKVREFEKDKD---IFFVTRKGVVKKTNLELFASINKAGIKAIGL 644 Query: 679 DSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 DE++ + + T +++I L T+ G +RF + +R GR + GV+GI+L D ++ Sbjct: 645 KDDDELIFAGLTSGTLKDEIFLATREGFAIRFSENDVRSM-GRTASGVKGITLRPEDVIV 703 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 + AI+ +A D +SG T Sbjct: 704 AGAII-YASED-----------------LSGKT--------------------------- 718 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILT+SE+G+GKRT ++R+ +R GKGI T++ K + G + V V+D+ +I+L+ Sbjct: 719 ---ILTISEEGYGKRTKLEEYRLQSRGGKGI--TNLKKNTKTGKISDVKIVDDSSEIMLI 773 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +GTLIR VN I I RAT GV I ++E+V S +I Sbjct: 774 TSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKVASTVKI 814 >gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] Length = 852 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/901 (40%), Positives = 560/901 (62%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL E++D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 E 905 E Sbjct: 822 E 822 >gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555] gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555] Length = 806 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/890 (41%), Positives = 553/890 (62%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 3 DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 63 RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 123 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +I+NP++ + LM I+GPDFPT +I+G +GIK+AY TGRG I++R Sbjct: 183 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I++ G + +IV+TEIPYQVNK+ ++E +A+LV+ KRI I+D+RDESDR G R+V Sbjct: 243 AKTEIQEEKG-KNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+A++ LNQLY++T +Q F V M+ L +P+ L +L ++ F+EE++ R Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ +DEV+ +IR S E AR L+ + +N Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK-FN-------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 413 -----------------LSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++S LL +IK EL+ ++D+ RRT I D+ ED I E++V+T++H GY+KR+ Sbjct: 456 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH+ +LFF++ G VYK K + +P Sbjct: 516 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 575 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N+L L+ E+I ++ F E + ++ Y + ATK G V++ +++ + I ++ Sbjct: 576 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ T ++++L+ TK G +RF +R GRN+ GV+ I+L K Sbjct: 633 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++M +I S K D Sbjct: 692 KDIAVAM--------------------------------DIASNKED------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL VSE GFGKRT ++ I R GKGI ++ + G +V V D D Sbjct: 707 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++ IR+ V++I SR GV + T +++RVV++ +I +E Sbjct: 757 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806 >gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] Length = 807 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/890 (41%), Positives = 553/890 (62%), Gaps = 86/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E + + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R L++G GNFGSVDGD AA RYT Sbjct: 64 RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K +L + K+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G + +I+NP++ + LM I+GPDFPT +I+G +GIK+AY TGRG I++R Sbjct: 184 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I++ G + +IV+TEIPYQVNK+ ++E +A+LV+ KRI I+D+RDESDR G R+V Sbjct: 244 AKTEIQEEKG-KNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKR A+A++ LNQLY++T +Q F V M+ L +P+ L +L ++ F+EE++ R Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L+KA RAH+L GL IA+ +DEV+ +IR S E AR L+ + +N Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK-FN-------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I NE N L IK +IL Sbjct: 414 -----------------LSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++S LL +IK EL+ ++D+ RRT I D+ ED I E++V+T++H GY+KR+ Sbjct: 457 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 Y +QRRGGKG + +++DFV +FI STH+ +LFF++ G VYK K + +P Sbjct: 517 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G L+N+L L+ E+I ++ F E + ++ Y + ATK G V++ +++ + I ++ Sbjct: 577 TAKGTNLVNLLPLDGDEQIQAVISFKEID---DDNYFIMATKRGLVKKTEINQYASIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+ T ++++L+ TK G +RF +R GRN+ GV+ I+L K Sbjct: 634 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D ++M +I S K D Sbjct: 693 KDIAVAM--------------------------------DIASNKED------------- 707 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 IL VSE GFGKRT ++ I R GKGI ++ + G +V V D D Sbjct: 708 --------ILVVSENGFGKRTPVTEYTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++L++ IR+ V++I SR GV + T +++RVV++ +I +E Sbjct: 758 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807 >gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] Length = 818 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/901 (41%), Positives = 561/901 (62%), Gaps = 89/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ + EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQTEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 S R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 SKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRKGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D DE Sbjct: 693 EGDKVVGASVV----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R+GKGI+ ++++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RESEIVDEA 906 + +++++D G +IR V I R+T+GV + +D ++V+ + ++ E+V+E Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVTFTTVQPDDKDEEVVEEN 817 Query: 907 E 907 E Sbjct: 818 E 818 >gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/897 (41%), Positives = 564/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS M+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+ + + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ +IS D E Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42] gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42] Length = 793 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/865 (43%), Positives = 538/865 (62%), Gaps = 92/865 (10%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI GEV+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+++ RMAQD++ R +L++G GNFGSVDGD AA RYTE R+ K A +L D+ KDT+D+ Sbjct: 61 YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDG+ +EPVV+ +R+PN+LVNG GIAVGMATNIP H LGEV++G +AV +NP+I Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LME I GPDFPT ILGR+GI+ AY +GRGSI IR + IE+TS +E+I+VTE+PY Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA ++EKIA+LVR+K+I I DLRDESDR G R+VIE++R A+A VILN LY+ T+L Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F +N++AL +P+ +L L+ ++ ++ V+ RRT Y L KA RAH+L GL IA Sbjct: 301 QTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 + +LD V+ +IR S E AR L+++ L+E Q Sbjct: 361 LDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQ 394 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 +AIL++RL RLTGL R+ I E SL I E DIL++ +R+L II++EL +K+ + Sbjct: 395 AQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFN 454 Query: 514 TPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 RRT IV GL +EDED I RE++V+T++H GYVKR+P S YR+Q+RGGKG G+ Sbjct: 455 DERRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTN 514 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 ++DFV L STH ++LFFS+ G VY+ K + +P A+G +IN+L + +GE I Sbjct: 515 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 574 Query: 633 IMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 I+P F E++ Y+ F TK G +R LS F I +G IA+ L DE+++V Sbjct: 575 IIPVSTFDEEQ------YLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRL 628 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + I++ TK G +RFP +R GR + GV+GI+L D V+ M I Sbjct: 629 TDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGITLTDDDVVVGMEI--------- 678 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 L+ DS V L V+E G+G Sbjct: 679 -------------------------LEEDSHV-------------------LIVTENGYG 694 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT + ++R+ +R GKG++ ++ N G LV V + +++++ G LIR+ +N+ Sbjct: 695 KRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATKGEEDLMIITASGVLIRMDIND 752 Query: 870 IRIASRATKGVVIFSTAKDERVVSV 894 I R T+GV + + E V +V Sbjct: 753 ISTTGRVTQGVRLIRMSDQEHVATV 777 >gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] Length = 848 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ Y Sbjct: 3 EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ ++YD++ RMAQ WS+R ++++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+QK + +L D+ KDTVD R N+D + EPVVL R PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G +A IDN +ID+D LM+ I PDFPTG +I G G+K+A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIYGYDGVKDAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 S IE+ G RE I+V+EIPYQVNKA M++K AELV EK+I I+++RDESDR G R+V Sbjct: 243 AKSVIEEVKG-RECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA RAH+L GL IA N+DEV+ IR S N + AR +L+ R Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AI+E+RL +LTGL +D +R E +++ I + DIL Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ R IIK EL +KD+ RR+ I DM ED I +VVT+S+ GY+KR Sbjct: 456 ANEPRRYEIIKGELAHIKDKYGDDRRSVIEYAGGDMSIEDMIPDTKVVVTISNAGYLKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +G+A+ N++++ Q +++ + + DE+ N+ YV+ ATK G V++ L + + Sbjct: 576 NTKGRAMQNLINIEQDDKVKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + T ++ ++L K G+ +RF + R GR + GVRGI+L Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALKSGKSIRFEEAKTRPM-GRTASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+VI M V ND Sbjct: 695 QHDKDEVIGMVAV-----------------------------------NDM--------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E IL VSEKGFGKR+ D+RI+NR GKG++ ++S+ + G LVA+ V+ Sbjct: 711 --------ESNILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D++ +++++ G IR+ V ++R+ RAT+GV + + ++ + +V ++ E V E Sbjct: 761 DSNDLMIINRSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEVPE 817 >gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 824 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/897 (41%), Positives = 544/897 (60%), Gaps = 86/897 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+ N+ K Sbjct: 9 RNMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTK 68 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A+I+G+VMGKYHPHG++AIYD+L RMAQ +++R L++GQGNFGSVDGDPPAA RYTE Sbjct: 69 SAKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 128 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K A LL+D+ K+TVDF+PNYD + EP VL R PN+LVNG GIAVGMATNIP H Sbjct: 129 RLSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPH 188 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+++ + +I +P +L +ME ++GPDFPTG ILGR GI +A+ GRG + +R Sbjct: 189 NLTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGRGQLKLRAK 248 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IEK DREQI+VTEIPYQVNK+ ++E + LV EK++ I D+RDESDR G R+V E Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG A+VILN LY++T LQ F + M+++ +P L+ ++K F+ R EVV RRT Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHRIEVVRRRT 368 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KARDR H+L+G A+ +LDEV+R+IR S +P+ AR L+ Sbjct: 369 EYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLIT-------------- 414 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 T S+ Q +AI+EL+L RLTG+ R I +EL + I E ++IL S Sbjct: 415 ------------TFQFSDKQAQAIIELQLQRLTGMERQKILDELGEIQRRIAEYVEILGS 462 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L +I +EL V+ RRT+I+E ++ ED + ED+ +TV+ GY+KR + Sbjct: 463 DKVLRDLIIKELKEVQKNYGDERRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSV 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGGKGR G+ R EDFV L + STH+ +L F++ G VY K + +P + Sbjct: 523 DTYRRQTRGGKGRIGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIG 582 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GK L N+++L E + + N Y+V TKHG +++++L++F G Sbjct: 583 KGKHLTNLINLQGDEEAKAFLSV---KDFVANQYIVMVTKHGVIKKSELTEFDNPLSRGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ LD DE++ + +N I L + GQ +RF +R GR + GVR +SLA GD Sbjct: 640 IAVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAM-GRQARGVRAMSLADGD 698 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++ M E+ Sbjct: 699 YLVGM-----------------------------------------------------EV 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K+ IL+++E G+GKRT D+R+++R GKG+ ++ N+ G +V + V ++ ++ Sbjct: 706 VEKDGLILSIAENGYGKRTPLEDYRLTSRGGKGV--INMKTTNKTGRVVGILSVKEDSEL 763 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAEST 909 ++VS G +IR+ + IR A R+T+GV + + D++V + I ES++V D+ + T Sbjct: 764 MIVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVIPESDVVPDDGQET 820 >gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] Length = 848 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/890 (41%), Positives = 551/890 (61%), Gaps = 85/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ + + Sbjct: 3 EGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ KDTVD + N+D + +EP VL R P +L+NG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG A IDN D+ +D LME ++ PDFPTG I G G++ A+ TGRG +V+R Sbjct: 183 PHNLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + E+ G RE I+VTEIPYQVNKA M++K A+++ +K+I I+ +RDESDR G R+V Sbjct: 243 AKAEFEEVKG-RECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +KR A +++LN+L++YT+LQS FSVN +AL +PE L ++ FV R EVVVR Sbjct: 302 YVIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA RAH+L GL IA N+DEV+ IIR S N + AR+ L++R Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R+E + I++ DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + R + II++EL +KD+ RR+ I D+ D I + +V+T+S+ GY+KR Sbjct: 456 AKKERRMSIIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS Sbjct: 516 SLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ Q + + + + DE NN Y++ ATK G V++ L + + Sbjct: 576 TSKGRAIQNLINIEQDDEVKAFVCTGDLKDEDYINNHYIIMATKKGQVKKTALEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+LS + T E+ ++L K G+ +RF S R GRN+ GVRGI+L Sbjct: 636 TNGINAITIKDNDELLSAKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A D+V+ M V ND+ Sbjct: 695 ANDEDEVVGMVSV-----------------------------------NDT--------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E IL VSEKG+GKR+S D+RI+NR GKG++ V++ + G LV++ V Sbjct: 711 --------ESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVSIKNVT 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D D +++++ G IR+ V +R+ RAT+GV + + ++ + +V +++ Sbjct: 761 DADDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVK 810 >gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] Length = 822 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 >gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] Length = 852 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/901 (40%), Positives = 559/901 (62%), Gaps = 88/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL+K ++ DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+V Sbjct: 243 AKAEIE-THTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +IK EL+ VK++ RR+ IV + ED + MV+T+SH+GY+KR Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + GD+VI M + +A Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904 D + +++++ G IR+ V E+RI RAT+GV + + K ++++ SV ++ E EI D Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821 Query: 905 E 905 E Sbjct: 822 E 822 >gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] Length = 822 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 559/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S + A+ ELM + Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKYEDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+ G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINIESERS--DDAYIFFTTRAGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TKLG VRF S++R + R++ GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMS-RSATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ ++ D DE Sbjct: 693 EGDAVVGARVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R+GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKN--GHLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + ++ ++V+ + +E Sbjct: 758 EDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAE 808 Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINIESERSDDA 609 >gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii] Length = 857 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/887 (43%), Positives = 549/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE S ++ IV+ E+PYQVNKA ++E+IA+L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIESKSK-KDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N + A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q +AIL++RL RLTGL RD + E L I I + IL Sbjct: 414 ---------------FGLSAIQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL IIK+EL +K++ PRRT I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEDRLNEIIKEELNEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P + DE+ + F TK+G V+R LS+F I Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTSDFDEAKS----LTFFTKNGIVKRTSLSEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + T + L+ T LGQC+RF + R GR++ GVR Sbjct: 635 NGVRAIVLDDDDEIVTAKIATVDTKYLMVFTSLGQCIRFEVDKARE-QGRSTRGVR---- 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AI D+D I D E I S Sbjct: 690 ---------AIKFKIDSD-----------------IVVDAEIIDS--------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++Q ILTVSEKG GKRT+ ++R++NR+G G+ A +S + G ++ V+D Sbjct: 709 ------EDQEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV + IR A R T GV+I + KD++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAK 807 >gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321] gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321] Length = 822 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 558/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +++KG+GKRT + ++ R GKG++ +++ N G+L + V + Sbjct: 709 ---------VLIITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAAE 808 Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ I + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVESERSDDA 609 >gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68] gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3] gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis] gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3] Length = 814 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/897 (41%), Positives = 564/897 (62%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TV+F NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+DNP++ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM++ Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+ + + Y+ FAT+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKDQEA--DSYLFFATRQGVVKRTSVSEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+ L DE+++V + DI++ TK G VRF + +R GR + GVRGI+L Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQ++ +IS D E Sbjct: 693 EGDQLVGAT------------------------MISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKGFGKRT + ++ R GKGI+ V+ N G+L + V+ + Sbjct: 709 ---------VLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + I++++D G +IR V I R+T GV + + ++++ + +EI +E E Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814 >gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6] gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6] Length = 822 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S E A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDESESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF S +R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ D DE Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDESESIQTIINVESERSDDA 609 >gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120] gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120] Length = 872 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/893 (42%), Positives = 548/893 (61%), Gaps = 56/893 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPFKKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 QALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG VAVI NP+I LM+ I GPDFPTGA ILG IK AY TGRGSI +RGV+ Sbjct: 188 LGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +IE + DRE I++TE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR G R+ Sbjct: 248 NIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ L L F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRIESIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+++LD ++ +IR + + TA+ EL+ Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELIT----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSEVQ AIL+++L RLT L D IR E L +I + DI Sbjct: 417 ---------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+L II+ E+ +K TPRRT I ++++ D I E ++ ++ GY+KR Sbjct: 462 LARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + AQ R +G++ ++D+D + H SVLFFS G VY K +++P+GS Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG ++ +L + + E+IT+I+P E S Y+V TK GN+++ +L+ F I Sbjct: 582 RTSRGTPIVQLLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTELAAFSNIRA 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D++ V E+ I++ ++LG + F + ++ GR + GV+ + L Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPLGRATRGVKSMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD+++ M I+ A D ++ + D ++I + +++VE E Sbjct: 699 KKGDELVGMDILPAAILDT---------LNTE----EPDIDDIETEDIETAVETTEVLET 745 Query: 790 CQELKLKE--------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + L+ E ++L ++ G+GKR FR+ NR+G+G+ AT L Sbjct: 746 LENLEAVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKL 805 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + VN +++I++V+++G +IR VN I I SR+ GV + +D+ + V Sbjct: 806 ATLGIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 858 >gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] Length = 949 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/853 (43%), Positives = 549/853 (64%), Gaps = 54/853 (6%) Query: 7 SSDEEEEKGI-------TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59 +SD+ E+KGI TS+ I +EM+ SY+ YA++VI+GRA+PD RDG KPVHRR+LF Sbjct: 57 ASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFA 116 Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + G+ +K Y K AR+ G+V+GKYHPHG+ A+YD + RM QD+SLR LI+GQGNFGS Sbjct: 117 MKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGS 176 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA RYTE R+ + A +L D+ K+TV F PNYDGS +EP VL A+ PN+LVNG Sbjct: 177 IDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGS 236 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATN+ HN+GEV+DG + +I+NPDI + LM +I+GPDFPTGA ILG GIK+ Sbjct: 237 TGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGTAGIKS 296 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRG++ IR V+ I++ DR++I+VTE+PYQVNKA M+E IA+LVREK I+ I+DL Sbjct: 297 AYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDL 356 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR+G RVVIEL RG + V+LNQLY++T +++ F V +AL KP+ L +L+ Sbjct: 357 RDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGKPKELNLKELLE 416 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ +R E++ +RT Y L K+ +RAH+L GL IA+ N+DEVV +I+ S N + A++ LM+ Sbjct: 417 IYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLME 476 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 L E+Q++AIL++RL RLTGL + EL Sbjct: 477 --------------------------NFALDEIQSKAILDMRLQRLTGLETKKVLEELEG 510 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I E I+ S II+ ELL +K++ RRT+I++ ++ +ED I E++V Sbjct: 511 LVKLIGELNKIIESDELKYEIIRNELLELKEKYGDARRTKIMQAASEVREEDLIHEEEVV 570 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+++ GY+KR+PL Y Q RGG+G G+ M++EDFV +LFI STH +LFF++LG +Y Sbjct: 571 VTITNGGYIKRIPLKTYTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRLY 630 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659 EKV+ +P GS Q+RGKA++N+L L GE I ++P E + N Y++ AT+ G +++ Sbjct: 631 WEKVYEIPEGSRQSRGKAIVNLLELKGGETINAMIPVKEFDK---NHYLLMATREGTIKK 687 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 LS+F ++G IA+ LD DE++ V + ++L+ +K G+ +RF +R GR Sbjct: 688 TPLSEFKNPRKAGIIAVTLDEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPM-GR 746 Query: 720 NSVGVRGISL-AKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEE 771 + GVRG++L D+V+S+ IV + + +R Y ++ A RR G Sbjct: 747 TARGVRGMALDGPEDEVVSLDIVDETTTLLTVTENGFGKRTEYSQY-PAHRRGGKGVITI 805 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 IT+ +N G +S R + + ++ I T S G R + D I R+ +G+R + Sbjct: 806 ITNERN-----GPVS--RVRSVADDDELIFT-SADGIIIRIPAKDISIQGRNTQGVRIIN 857 Query: 832 VSKINEIGALVAV 844 + +++ + + Sbjct: 858 LKSGDKVAGIARI 870 >gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum IPO1609] gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum IPO1609] Length = 842 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/867 (42%), Positives = 540/867 (62%), Gaps = 67/867 (7%) Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 +HRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L+ Sbjct: 1 MHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLV 60 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 +GQGNFGSVDGD AA RYTE RL K AH LL D+ K+TV+F PNYDGS EP +L AR Sbjct: 61 DGQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARI 120 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231 PN+L+NG GIAVGMATNIP HNL EVVDGC+ ++ NPD +D L+E+I PDFPT +I Sbjct: 121 PNLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGII 180 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVRE 290 G +G++ Y TGRG +V+R +H E G R+ I+V E+PYQVNK +LE+IAELV E Sbjct: 181 YGISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTE 240 Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350 KR+ I+D+RDESD+ G RVVIELKRG +V+LN LY+ T LQ F +NMVAL +P Sbjct: 241 KRVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPR 300 Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410 L +L+ F+ R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P Sbjct: 301 LLNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTP 360 Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTR 455 A++ELM RSW++ ++D++ + + + + DG LS+ Q + Sbjct: 361 PIAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQ 420 Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515 IL++RL RLTGL +D I E + +I + LDIL+ R+ II +EL ++ E Sbjct: 421 EILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDE 480 Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 RR++I +++ ED I +D+VVT+SH GY+K P+S YRAQ+RGG+G+ +++D Sbjct: 481 RRSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDD 540 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635 ++ LF+ +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L+ GE+I I+P Sbjct: 541 WIDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILP 600 Query: 636 FPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694 + DE +V AT G V++ L++F ++G IA+ LD D ++ + ++ Sbjct: 601 VKQFDEQH----FVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQH 656 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 D++L + G+ VRF + +R GR + GVRG++L +G QVI+M + A A+ Sbjct: 657 DVMLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLV---APAE------- 705 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 T+ + + +V G+ +LT +E G+GKRT Sbjct: 706 ------------------TAGEGEQAVAGS---------------VLTATENGYGKRTPI 732 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 ++ R KG+ A S+ N G +VA V D+I+L++ G LIR V+EIR Sbjct: 733 SEYTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMG 790 Query: 875 RATKGVVIFSTAKDERVVSVERIRESE 901 RAT+GV + + + ++ ++R+ ES+ Sbjct: 791 RATQGVTLIAVGEGNKLSGLQRVVESD 817 >gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] Length = 812 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/886 (43%), Positives = 566/886 (63%), Gaps = 93/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I D + SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+ + Y K A Sbjct: 3 VIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R LI+GQGNFGS+DGD AA RYTE RL Sbjct: 63 RIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARL 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 123 TKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D V +IDN + +L+ +++ I+GPDFPTG +I GR GI AY +GRGSI IR H Sbjct: 183 GELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAKHH 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G+RE IV+ E+PYQVNKA ++EKI+ELV++K I I+++RDESDR+G RVVIELK Sbjct: 243 IEH-RGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A +++ILN LY++T +Q F +NM+A+ +P+ F L+ IL F+ FR+ VV+RRT Y Sbjct: 302 KDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIRRTIY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+ L++R Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ +AIL+++L+RLT L + ++ E + L +I IL S Sbjct: 407 -----------FDLSEVQAQAILDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEES 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +IK+E L ++ + R+T IV+ D++ ED I EDMVVT++H GYVKRVPL Sbjct: 456 VLNNVIKEEFLEIRKKYANERKTEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKT 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ + + DF+ D +I H +++ ++ G ++ KV+++P GS ++G Sbjct: 516 YERQNRGGKGKKALTTYENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSKG 575 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+++L++ E+I TI+ F E++S + F TK+G V+R LS+F I +G Sbjct: 576 KAIVNLINLDKDEKIQTIIKTSDFDENKS------LAFFTKNGIVKRTNLSEFKNIRSTG 629 Query: 673 KIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ +D DE+++ + +++ L + TK G +RFP+ A+R GRN+ GV+GI+ Sbjct: 630 VRAIVIDKDDELVTAKIVKEDDKYLFIVTKKGMAIRFPVDAVREM-GRNARGVKGITFKI 688 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ G +S Sbjct: 689 EGDEVV----------------------------------------------GALS---- 698 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L+ ++Q IL+VSEKGFGKRT + +R++NR GKG+ A ++ N+ G LV V +N Sbjct: 699 --LRDEKQEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEEN 754 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ KG +IRV ++ I + T+GV + D++VVSV + Sbjct: 755 HDLMLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAK 800 >gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus] Length = 860 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V + D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R L++GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +IDNP + LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE + ++ +V+ E+PYQVNKA ++E IA L ++K+I IA++RDESDR G RVV Sbjct: 246 AKHHIE-SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A A+++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L + I E IL Sbjct: 414 ---------------FGLSSIQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L IIK+EL +K++ TPR+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIKEELNEIKEKFSTPRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P P+ DES +VF T++G ++R L++F I Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTPDFDESKS----LVFFTRNGVIKRTSLNEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + Q I++ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDTDEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I IV+ AD +E Sbjct: 694 K-----IDTDIVVDADVIDNE--------------------------------------- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EQ ILTVSEKG GKRT+ ++R++NR+G G+ A +S + G +V V+D Sbjct: 710 -------EQEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV VN IR A R T GV+I + +++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824] Length = 829 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/886 (43%), Positives = 550/886 (62%), Gaps = 94/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY K A Sbjct: 9 IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP H + Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRV 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D V +IDNP +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R +H Sbjct: 189 DEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRAKTH 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I I+++RDESDR+G RVVIELK Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RRT + Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+ + +N Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ-FN------------ 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL R+ I NE L EI+ IL S Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSED 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP+ Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S A G Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581 Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+++L E+I T F ED+S + F TK+G ++R LS+F I G Sbjct: 582 KAVVNLINLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRSVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + + IL+ T G CVRF + +R GR + GV I Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V S + EE Sbjct: 695 PKDYVIGATVV------------------------SNENEE------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 712 ---------ILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVN-VDDDKVVSIAR 805 >gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] Length = 867 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/892 (41%), Positives = 545/892 (61%), Gaps = 87/892 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 ILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGS+DGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC A IDNPDIDLD LM+ I+ PDFPTGA I G G++ AY TGRG IV+R + Sbjct: 192 SEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE SG+ ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQG R+VI++ Sbjct: 252 IE--SGESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTK Sbjct: 310 KRDANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTK 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++RAH+L GL IA N+DEVV IIR S P A+R L QR Sbjct: 370 YDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E+Q++AI+++RL++LTGL D + E L +I IL Sbjct: 416 ------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDP 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++K EL VK++ RRT I + ED + +V+TVSH+GY+KR PLS Sbjct: 464 ELCKKVMKDELNEVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLS 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R Q RGG G R++DF ++ + H ++LFF+ G Y K + +P G ++ Sbjct: 524 EFREQARGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSK 583 Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+A+ N+L++ + I I+ DES N+ YV+FATK+G V++ L + + +G Sbjct: 584 GRAIQNMLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEAYSRPRANG 643 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ + DE++ V N++++ + G+ VRF + IR GR + GVRG+ L G Sbjct: 644 VIAINIVDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGG 702 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M V A++ Sbjct: 703 DDEVVGMVTVNEAES--------------------------------------------- 717 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV++ V D + Sbjct: 718 ------ESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEN 769 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++++ G +IR+ V ++R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 770 DLMIINKSGVVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] Length = 895 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/900 (41%), Positives = 546/900 (60%), Gaps = 83/900 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 VS+ +EM+ SYL+Y+++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WNK Y K ARI Sbjct: 11 VSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+S+R +L++GQGNFGS+DGD AA RYTE RL+K Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEKI 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 +H +L DL K+TVDF PNYDGS EP +L + P +L+NG GIAVGMATNIP HNL EV Sbjct: 131 SHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGC+ + NPD +D L+E I PDFPTG +I G +G++ Y TGRG +++R +HIE Sbjct: 191 IDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIYGYSGVREGYRTGRGRVIMRAKTHIED 250 Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G+R+ I++ EIPYQVNK + EKIA+LV EKRI I+D+RDESD+ G R+VIELKRG Sbjct: 251 FEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELKRG 310 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ADV+LN L++ T LQ F +N+VAL +P+ L ++ F+ R EV+ RRT + L Sbjct: 311 EVADVVLNNLFKLTQLQDTFGMNLVALVNGQPKLLNLKELVVYFLQHRREVITRRTVFEL 370 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD- 436 KAR+ H L GLA+A+AN+DE ++II+ S +P+ A LM R W++S +K L+ +D+ Sbjct: 371 RKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRVDED 430 Query: 437 ---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 Y + +DG YLS QTR IL + L RLTGL ++ I + + Sbjct: 431 KALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYEAAM 490 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDE--LDTPRRTRIVEGLLDMEDEDCIVREDMV 539 I + LDILS R+ II +EL+++K+E + RR++I ++ E ED I DMV Sbjct: 491 DAITDLLDILSKPERITAIIGEELIAIKNEYTIKDARRSQIEYNAVEFETEDLITPMDMV 550 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT+S+ GY+K PLS Y+AQ RGGKG+ M+D DFV LFI +TH VL FSSLG ++ Sbjct: 551 VTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVLCFSSLGRLH 610 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGN 656 + KVW +P G ++G+ ++N+ L + E+IT ++P F +D+ ++ AT G Sbjct: 611 RLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQ------FIFLATAKGV 664 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 V++ LS + + IA+ LD D ++ E +DI+L + G+ VRF S++R Sbjct: 665 VKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDESSVRA- 723 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR+S GV G+ L +G +IS+ + + +A Y+ ++A T + + Sbjct: 724 TGRSSRGVLGMRLEEGQSIISLIVSKNENA-------YV--LTATENGYGKRTPVVEYTR 774 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 + +G I+ + S R+GK + A V + + Sbjct: 775 HGRGTKGMIA------------------------------IQTSERNGKVVAAVLVDESD 804 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 E I+L++ G ++R V IR RAT+GV + D ++ V+R Sbjct: 805 E---------------IMLITTDGIVVRTKVAPIRELGRATQGVKLIRIDNDTKLKGVQR 849 >gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169] gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1] Length = 888 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/917 (41%), Positives = 563/917 (61%), Gaps = 62/917 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A Sbjct: 5 VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244 Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G RV Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+EVV Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + + Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424 Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 +D +ID + Y + + T Y LS Q AIL+++L RLTGL +D + Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED I Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F++ Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G V++ + + +PI S ++G+ L+N+++L E +T I+P + DE+S +V FAT Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF +I Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R + R + GVRG M + L D +E + +S + Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLTTIDEEELLDEDGDEVGDDFAVS----RVV 764 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 SL + K+ IL E GFGKRT D+ R GKG+ A S Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866 Query: 894 VERIRESEIVDEAESTE 910 + + + DE E +E Sbjct: 867 MACVEHDD--DEIEESE 881 >gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] Length = 824 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/891 (43%), Positives = 555/891 (62%), Gaps = 87/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y K A Sbjct: 19 IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE R+ Sbjct: 79 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP HN+ Sbjct: 139 SKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G + +IDNPD +D LM +I+GPDFPT +ILG I+ AY TGRG I +R +H Sbjct: 199 VEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R+VIEL+ Sbjct: 259 IETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELR 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++ +VILNQLY++T LQ F V M+AL +P L +L+ ++ +E V+ RRT+Y Sbjct: 319 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITRRTRY 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 379 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 DG L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ R Sbjct: 422 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRM 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+PL Sbjct: 473 KVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDT 532 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P QA+G Sbjct: 533 YRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKG 592 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A+IN+L++ ERIT ++ E + + Y+ TKHG V++ LS+F I R+G A Sbjct: 593 TAIINLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGSIRRNGLKA 649 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+LA GD+V Sbjct: 650 VNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEEGVRSM-GRVARGVRGITLADGDEV 708 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++M + L++DS V Sbjct: 709 VAMDV----------------------------------LRSDSEV-------------- 720 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V +N +++L Sbjct: 721 -----LTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQELML 773 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +G +IR V+EI + SR T+GV + + A+ +RV S+ + + IVD A Sbjct: 774 ITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATM--NRIVDSA 822 >gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 825 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/885 (42%), Positives = 562/885 (63%), Gaps = 70/885 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I E+++SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + WNK Y K A Sbjct: 8 IVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD++ RMAQ++SLR +LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL DL K+TV+F PNYDG+ P +L ++ PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VS 254 EV+DGC+A I + +I L L++ I GPDFPT +I G+ GI+ AY TG+G I IR Sbjct: 188 NEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIYIRARNK 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 + +E I+ EIPYQVNK+ ++EKIAELV+EKRI I LRDESD+ G R+V+E+ Sbjct: 248 IEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A +++ILNQLY T LQ F +NMVAL +P+ +L ILK F++ REE+V RR+ Sbjct: 308 KKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREEIVTRRSI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L+K R+H+L GL+IA+ N++ ++ +I+ + + A+ +++++W + Sbjct: 368 FELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTW----------IY 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +S D + +E Q +AIL+LRL +LT L ++ + E + L +IKE IL SR Sbjct: 418 KNSEKINQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSR 477 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ +I+ EL+S+K+ RRT I E D+ ED I +ED+VVT+SH GYVK PLS Sbjct: 478 DRMREVIRDELVSIKNNFGDQRRTEITENNPDISIEDLINQEDVVVTLSHSGYVKYQPLS 537 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y AQ+RGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++LP S A+ Sbjct: 538 DYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHAK 597 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ ++N+L L+ ERIT I+P E + +NL + AT G V+++ L +F + +G I Sbjct: 598 GRPIVNLLPLSNKERITAILPIHEFK---DNLNIFMATAQGIVKKSSLKEFKKPRIAGII 654 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L + DE++ V +N+I+L T+ G+ V+F +++R GR + GVRGI ++K D+ Sbjct: 655 AINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTM-GRTASGVRGIKISKNDK 713 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ I K +S Sbjct: 714 VVSL---------------------------------IVPYKKES--------------- 725 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL + G+GKRT DF I +R+ +G+ + ++K N G ++ V + DQI+ Sbjct: 726 -----ILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKN--GKIIGAIQVVEKDQIM 778 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++ GTL+R+ +EI + R T+GV++ T+K+E+VV+++RI E Sbjct: 779 MITNAGTLVRIRASEIGVLKRNTQGVILIRTSKNEKVVALQRIVE 823 >gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] Length = 854 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/881 (41%), Positives = 544/881 (61%), Gaps = 85/881 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF+ N+D + QEPVV+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG I G +G+++AY TGRG +++ Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVIM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE + ++IVV EIPY VNK ++E IA LV EK+I I+ + DESDR+G R+ Sbjct: 242 RAKAEIE-SHPTHDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R EV++ Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIQLFVEHRHEVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMER---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FQLSEVQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L + +IK EL+ VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LVNEELCKKVIKDELIEVKEKYGDKRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIDADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M Sbjct: 694 LDEDGQDEVIGMI----------------------------------------------- 706 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 C + LKE I+ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ Sbjct: 707 ---CIKDPLKET-IMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IR+ V ++RI RAT+GV + K Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEK 801 >gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511] gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511] Length = 843 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/890 (43%), Positives = 558/890 (62%), Gaps = 91/890 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E +G+ V I + +Q SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 6 ENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAA 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGS+DGD AA RY Sbjct: 66 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A LL D+ KDTVDF PNYD S +EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H L E++D + ++NP+ +++ LM++++GPDFPTG VI G+ GI +AY+TGRG I + Sbjct: 186 PPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGRGRIKV 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIE+ +RE IV+ E+PYQVNK+ ++E IA+LVR+K+I I+++RDESDR+G RV Sbjct: 246 RAKTHIEQHK-NREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A +D++LN L++ T +Q+ F + M+A+ +P+ FTL +L F+ R+ V++ Sbjct: 305 VIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHRKTVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL IAV N+DEV++IIR S + AR LM R Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSR---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAILE+RL RLTGL + I +EL L I+ I Sbjct: 415 ----------------FDLSEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + + IIK+ELL VK+ RRT IV+ D++ ED I E MVVT++H GY+KR Sbjct: 459 LKSETMIEEIIKKELLEVKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP+ Y QRRGGKG++ V ++DF+ FI +TH +++F + G +Y KV+R+P GS Sbjct: 519 VPVKQYEKQRRGGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGS 578 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+GKA++N+++L++ E+I I+P F ED+S +VF T++G V+R LS++ Sbjct: 579 RTAKGKAVVNLINLDKDEKIKAIIPTQDFNEDKS------LVFFTRNGIVKRTNLSEYSN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I G A+ LD DE++ + + + + TK G C+RFP+S +R GR + GV Sbjct: 633 IRSVGVRAINLDENDELIDAKIIKPDTKWLFVVTKKGMCIRFPVSDVREI-GRVARGV-- 689 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 AI D DY +C T+++N+ Sbjct: 690 -----------TAIKFKIDGDY---VCGA-----------------TTIENE-------- 710 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E IL VSEKG GKRT + ++R +R+GKG+ A ++ + G +V V Sbjct: 711 ----------EDEILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTP--KTGDVVGVVF 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V ++ ++ ++ G +IRV + IR A RAT GV I + +RVVS+ + Sbjct: 759 VEEDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVSIAK 808 >gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 881 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/878 (43%), Positives = 541/878 (61%), Gaps = 51/878 (5%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K AR+ G+V+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+ + RMAQD+SLR LL++GQGNFGS+DGD AA RYTE R+ K AH LL DL KDTVD+ Sbjct: 61 YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 NYDGS + P VL R PN+L+NG GIAVGMATN+ HN+ EVV+ C+A DNP+I + Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-TSGDREQIVVTEIP 272 + LME I GPDFPTG +I G++GI +AY TG+G + IRG H E+ R IV TEIP Sbjct: 181 EGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIP 240 Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332 YQVNKA ++E+IAELV+EK++ I++LRDESD++G R+ I+LKRG +A+V++N L+ T Sbjct: 241 YQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQ 300 Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392 L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT + L KAR+R H+L GL + Sbjct: 301 LENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTV 360 Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI------------DDSSYT 440 A+AN+DE++ I+ S NP AR L+ W + L++ +D + Sbjct: 361 ALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRP 420 Query: 441 IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 G SD LS Q AILELRL RLTGL +D + E + +I E IL+ + L+G Sbjct: 421 FGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMG 480 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I++EL V + RRT IVE +D ED I E +V+TVS GY K PLS Y+AQ Sbjct: 481 VIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQ 540 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGG+G+S M+D+DF+ L + S H +VL F+++G VY+ KV+ +P S A+G+ ++ Sbjct: 541 RRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIV 600 Query: 620 NILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 N+L L+ E +T I+P FPE N YV AT G V+R +L F I +G A+ Sbjct: 601 NLLPLDATETVTAILPLTEFPE------NHYVFMATASGTVKRVELEQFANIRSNGLRAI 654 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 +L+ D ++ V I+L + G+ +RF + +R GR + GVRG+ ++ + Sbjct: 655 ELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTAKGVRGMRVSFASSTL 713 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S DAD + SA L+S I SL + E + Sbjct: 714 S-----EEDADVENDDSDDNDDSADSSLVS----RIVSLV--------VVPETGE----- 751 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L S G+GKRT DF R GKG+ A S+ N G LV +++ +++L+ Sbjct: 752 ---VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GELVGAVSIDETKELLLI 806 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 SD GTL+R E+ + R +GV + +++E +V V Sbjct: 807 SDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGV 844 >gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] Length = 829 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/886 (43%), Positives = 550/886 (62%), Gaps = 94/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV KY K A Sbjct: 9 IQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE ++ Sbjct: 69 RIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AA +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG GIAVGMATNIP H + Sbjct: 129 TQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPPHRV 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D V +IDNP +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R +H Sbjct: 189 DEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRAKTH 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I I+++RDESDR+G RVVIELK Sbjct: 249 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RRT + Sbjct: 308 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRRTIF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+ L+ + +N Sbjct: 368 ELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ-FN------------ 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL R+ I NE L EI+ IL S Sbjct: 415 -------------LSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSED 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L IIK+ELL VK++ T R T I E ++ ED I E +VVT+SH GYVKRVP+ Sbjct: 462 LLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ D+DF+ F+ TH +++F ++ G +Y KV+++P S A G Sbjct: 522 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIG 581 Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+++L E+I T F ED+S + F TK+G ++R LS+F I G Sbjct: 582 KAVVNLINLAPDEKIMATITTKDFNEDKS------IAFFTKNGIIKRTNLSEFKNIRNVG 635 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD DE+++ + + IL+ T G CVRF + +R GR + GV I Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI +V S + EE Sbjct: 695 PKDYVIGATVV------------------------SNENEE------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 IL+VSEKG GKRT ++RI+NR GKG+ A ++ ++ G LV V V++N Sbjct: 712 ---------ILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +++++ G +IRV + IR A RAT GV+I + D++VVS+ R Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVN-VDDDKVVSIAR 805 >gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1] Length = 872 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/901 (42%), Positives = 557/901 (61%), Gaps = 60/901 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+K A Sbjct: 5 VSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYLKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE ++ Sbjct: 65 RVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTEMKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL K+TVD+ NYDGS + P VL AR PN+LVNG GIAVGMATN+ HNL Sbjct: 125 QKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A ++P+I D L+ I GPDFPTG +I GR+GI +AY TG+G + IRG H Sbjct: 185 TEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRGRYH 244 Query: 256 IEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE+I+ T+IPYQVNKA +++ IA+LV K+I I ++RDESD++G RV Sbjct: 245 IEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEGVRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG + +V++N L+ T L++ FS+NMVAL+ +P+ TL ++ AF+ R+EVV Sbjct: 305 AIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQEVVT 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKA R H+L GLAIA+AN+D++++ I+ S N AR L+ R+W ++ + + Sbjct: 365 RRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGVVAM 424 Query: 431 ID----------LID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 +D +ID + Y + + T Y LS Q AIL+++L RLTGL +D + Sbjct: 425 LDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDKLTG 484 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + EI IL L+G+++ EL+ ++DE R+T IV+ D ED I Sbjct: 485 EYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDLIPE 544 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y+AQ+RGGKGRS M+++D + L + STH +L F++ Sbjct: 545 QTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNT 604 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653 G V++ + + +PI S ++G+ L+N+++L E +T I+P + DE+S +V FAT Sbjct: 605 GRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLKDENS----FVFFATA 660 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V+R LS F + G A+ L D ++ V E +I+L + G+ +RF +I Sbjct: 661 SGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQSI 720 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R + R + GVRG M + L A D +E + +S + Sbjct: 721 RAMS-RVAKGVRG-----------MRVNLLATTDEEELLDEDGDEVGDDFAVS----RVV 764 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 SL + K+ IL E GFGKRT D+ R GKG+ A S Sbjct: 765 SLV----------------VAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTS 808 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + N G LV V + +IL+SDKGTL+R PV +I A R +GV + A +E +V Sbjct: 809 ERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLVG 866 Query: 894 V 894 + Sbjct: 867 M 867 Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 36/240 (15%) Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D++DE+ V T S G VKRV LS + R GG + + + D + + I Sbjct: 647 DLKDENSFV---FFATAS--GTVKRVALSQFANLRAGG--LRAIDLAEGDTLIGVAITDG 699 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARG--KALINILSLNQGE--------------- 628 ++ FS+ G + K + S A+G +N+L+ E Sbjct: 700 EQEIMLFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFA 759 Query: 629 --RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-E 683 R+ +++ P+ ++ A ++G +R + D+ R GK IA+K R+ + Sbjct: 760 VSRVVSLVVAPKQGE------ILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQ 813 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++ T E D++L + G VR P++ I AGRN+ GV+ I +A + ++ MA V H Sbjct: 814 LVKAIAVTGEEDVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEH 872 >gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205] gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205] Length = 910 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/896 (42%), Positives = 542/896 (60%), Gaps = 51/896 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+VI+N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 366 YELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G G +Y LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+++G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ ++N+L L E IT I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L F + +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ ++ I + D + S I SL Sbjct: 719 RTAKGVRGMRVSFASNTIDVE---------DAEVENDDSDDNDDSSDSNVVSRIVSLV-- 767 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + E + +L G+GKRT DF R GKG+ A S+ N Sbjct: 768 ------VVPETGE--------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 811 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G L++ +++ +++L+SD GTL+R E+ R +GV + + E +V V Sbjct: 812 GELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGV 867 >gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1] gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4] Length = 874 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/899 (41%), Positives = 545/899 (60%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 IHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+GKDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +IDN D D++ L+ I++GPDFPTG +ILG GI AY TGRG + + Sbjct: 189 REVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGTAGINEAYRTGRGKVRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R ++ IE + +IVVTE+PY VNKA ++EKIAELVR+K++ I DLRDESDRQG R+ Sbjct: 249 RAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDESDRQGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +V+LN LY++T LQ F V M+AL +P+ L +LK ++ +EEVV Sbjct: 309 CIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNEPKVLNLYDMLKYYLIHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N + A+ LM+R Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q++AI+++RL LTGL R+ + E L I E I Sbjct: 419 ----------------FSLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + +LLG+I+ E+L + D+ RRT I D+ ED I + V+T++ LGY+KR Sbjct: 463 LADKKKLLGVIRTEILLIADKYGDDRRTSIGFDEYDISMEDLIPVTNTVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + L +RAQ RGGKG G+ D+D++ +L + ++H ++FF++ G VY+ K + +P S Sbjct: 523 MSLDNFRAQNRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKAYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L GE+IT ++P E ++ ATK G V++ ++D+ + + Sbjct: 583 RTARGTAIVNLLQLQPGEKITAVIPIREYTEGH---FLFMATKKGIVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ D+ L TK GQC+RF + +R GR S+GV G++L Sbjct: 640 TGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVRK-TGRTSMGVIGMNLT 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD+VI M + DA Sbjct: 699 DGDEVIGMQMQSQGDA-------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ VSEKG GK T +F NR GKG++ +++ + G +V V VN + Sbjct: 715 ---------LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITE--KTGNIVGVKAVNQD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAES 908 ++++L++ +G +IR+ V++ + R T GV + + ++ V S+ ++RE + ++D A++ Sbjct: 764 NELMLITTEGIIIRIKVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSLIDNADT 822 >gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] Length = 929 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/915 (41%), Positives = 561/915 (61%), Gaps = 34/915 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D P+ D+D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI +LVR+K + IAD Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIAD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLID---------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGL 468 R+W +S ++D++ D +G G YLSE+Q AIL + L LTGL Sbjct: 421 ARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL +K R++ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ V +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSNLGK- 713 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-DERICYMKHMSAQRRL 764 AIR G + +S + D + D KH Sbjct: 714 ------AIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGR 767 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 SG + +N V C++ L+ +LT + G+GKRT D+ N+ G Sbjct: 768 GSGGLRGMRLPENGRIVSLITFAPECEQGDLQ---VLTATANGYGKRTPIADYSRKNKGG 824 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 +G A + + N G LVA V ++D ++L++ G LIR V++IR RA GV + + Sbjct: 825 QGNIAINTGERN--GDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGRAAAGVKLIN 882 Query: 885 TAKDERVVSVERIRE 899 + E++VS+ER+ E Sbjct: 883 LDEGEQLVSLERVAE 897 Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 11/133 (8%) Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--R 572 P RIV L+ E C + V+T + GY KR P++ Y + +GG+G + R Sbjct: 778 PENGRIVS-LITFAPE-CEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGER 835 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 + D V +V ++ +S G + + KV ++ R A + +++L++GE++ + Sbjct: 836 NGDLVA-ATLVGESDDLMLITSGGVLIRTKVDQI---RETGRAAAGVKLINLDEGEQLVS 891 Query: 633 ---IMPFPEDESS 642 + PED ++ Sbjct: 892 LERVAEEPEDTAA 904 >gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] Length = 866 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/741 (48%), Positives = 496/741 (66%), Gaps = 23/741 (3%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K Sbjct: 6 KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K +H LL DL K+TVDF NYDG+ + P VL R PN+LVNG GIAVGMATNIP H Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV GC+A+I+N D+ +D LME I GPDFPTG +I GR GI AY TGRG I +R Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGIINGRAGILQAYRTGRGRIYVRAK 245 Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+E + SG + +++TEIPYQ+NKA ++EKIAELV++K+I I +LRDESD+ G R+V Sbjct: 246 HHVEEDQKSG-KASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RG DV++N L+ T ++S+F +NMVAL +P+ L L+ F+ R EVV R Sbjct: 305 IELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQPKILDLKTALECFIRHRREVVTR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT YLL KAR+R H+L GLA+A+AN+D V+ +I+ SP P A+ L+ +W D+ ++ Sbjct: 365 RTVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQML 424 Query: 432 DLIDDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + + + Y + +G LS Q +AILELRL RLTGL + + E L Sbjct: 425 ERAGEDACRPEDLEEQYGL-REGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLE 483 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I E L IL S RL+ +I++EL ++ +E RRT I D+ D I EDMVVT+ Sbjct: 484 RIAELLKILGSHERLMEVIREELEAILEEYGDERRTEITASRKDLTVADLITEEDMVVTI 543 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH GY K PL+ Y++QRRGGKG+S ++DEDF+ L I +TH ++L F+ G VY + Sbjct: 544 SHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLR 603 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 V+ +P+ S ARG+ ++NIL L++GERI+TI+P + ED+ ++ AT G V++ Sbjct: 604 VFEIPVASRTARGRPIVNILPLDEGERISTILPVGGYEEDK------FIFMATASGTVKK 657 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L++F + SG IA+ L D ++ E+D++L T G+ +RF +R GR Sbjct: 658 TALTNFSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPM-GR 716 Query: 720 NSVGVRGISLAKGDQVISMAI 740 + GVRG+ + G +VIS+ I Sbjct: 717 TARGVRGVKMDDGVKVISLII 737 Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ILT SE G+GK+T+ DF + R G+G+ A S N G+L V D D ++L+SD+ Sbjct: 744 ILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRN--GSLAGAVQVFDGDDVMLISDQ 801 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 GTL+R +EI R T+GV + A DER+VSV RI E E Sbjct: 802 GTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPE 843 Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 15/127 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EIT+ + D +V I+EE ++T+S G+ K D++ R GKG A Sbjct: 520 EITASRKDLTVADLITEE---------DMVVTISHGGYAKTQPLTDYQSQRRGGKGKSAA 570 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAK 887 + + I L+ N +D I+ +D+G + + V EI +ASR +G V I + Sbjct: 571 AIKDEDFIEHLLI---ANTHDTILCFTDRGKVYWLRVFEIPVASRTARGRPIVNILPLDE 627 Query: 888 DERVVSV 894 ER+ ++ Sbjct: 628 GERISTI 634 >gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] Length = 718 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/716 (49%), Positives = 491/716 (68%), Gaps = 15/716 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R + Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + + RE IVV EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 IETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T +Q F +NMVAL+ +P+ TL L+AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P A+ L+ +W ++ +++ Sbjct: 368 FELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLERA 427 Query: 435 DDSS---------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D + Y I DG YL+E Q +AIL+LRL +LTGL + + +E L +I Sbjct: 428 GDDAARPEWLEPQYGI-RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQIA 486 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL S RL+ +I++EL++++++ RRT I D+ ED I +ED+VVT+SH Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK PLS Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV++ Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQ 606 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ +IN+L L ERIT I+P E N V AT G V++ L++F Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + +G IA+ L+ DE++ V+ ++++L + G+ VRF A+R GR + Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTA 718 >gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] Length = 822 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGVVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ + D Sbjct: 693 EGDTVVGASVITNQD--------------------------------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E I+T EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 708 ------EVLIIT--EKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 >gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] Length = 842 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/895 (41%), Positives = 553/895 (61%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K Y K A Sbjct: 7 IVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVDGD AA RYTE ++ Sbjct: 67 RIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAKM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 127 TKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G IDNP+I + LM I+GPDFPT +I+G++GI+ AY TGRG +++R + Sbjct: 187 TEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVILRSRAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G + +IVVTEIPYQVNKA ++E IA LV++KRI I+DLRDESDR+G R+VIELK Sbjct: 247 IEEDKG-KSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIVIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LNQLY++T +Q F + M+AL +P+ +L +L+ ++ F+EEV+ RRT++ Sbjct: 306 RDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEEVITRRTQF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ ++DEV+R+IR S A+ LM + Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFG------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q AIL+++L RLTGL R+ I E L +K ILS +S Sbjct: 413 -------------LSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKS 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL IIK EL +K + R++ I+ EG D++ ED I +D+V+T++H GY+KR+P+ Sbjct: 460 LLLKIIKDELNEIKTKYGDERKSEIIQDEGN-DIDIEDLIEEKDVVITLTHAGYIKRLPV 518 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y AQ+RGG+G + +++DFV + STH ++LFF++LG VY+ K +++P A Sbjct: 519 ETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEAGRTA 578 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G LIN++ L++ E+I ++ E + + +++ TK G +++ L + I ++G Sbjct: 579 KGMNLINLIPLDKEEKIQNVIYLKEFKE---DTFLIMGTKKGLIKKTSLDKYASIRKNGL 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L DE++SV T + +++ TK G +RF + +R GR + GV+ I+L + D Sbjct: 636 NAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPM-GRTATGVKAITLREDD 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM + SE R Sbjct: 695 EVVSMEVA--------------------------------------------SENRD--- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L VSE G+GKRT + + R GKG+ +S+ + G L+ V D D++ Sbjct: 708 ------LLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISE--KTGLLIGARFVEDKDEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +L++D G IR+ V++I SR GV + T +E+VV++ ++ SEI D+ + Sbjct: 760 MLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISEIEDDCNN 814 >gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 557/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T++G V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609 >gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] Length = 886 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/930 (40%), Positives = 560/930 (60%), Gaps = 122/930 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKP HRRIL+ M +G+ +K + K A Sbjct: 8 IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKPHKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+YD + RMAQD+S R L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+TV+F+ NYDGS +EP VL +R+PN+LVNG GIAVGMATNIP H L Sbjct: 128 SKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+ NPDI + LM+ I GPDFPT ILGR+GI+ AY TGRGS+++R + Sbjct: 188 GEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSLIVRAKAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+T DRE+I+VTE+PYQVNKA ++EKIA+LVREK+I I DLRDESDR+G RVV+E++ Sbjct: 248 IEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRVVMEIR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A VILN LY+ TS+Q+ F VNM+A+ +P TL +L ++ ++E+V RRT++ Sbjct: 308 RDANASVILNNLYKQTSMQTTFGVNMLAIVSGRPRTLTLKEMLYHYLEHQKEIVRRRTQF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H+L GL IA+ +LDEV++IIR + + AR +LM+R Sbjct: 368 DLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMER--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q++AIL++RL RLTGL R+ I E + + I E IL S Sbjct: 413 -----------FELSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRILESDE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LL +I+ EL VK+ + RRT I ++ EDED I +D+++T++ GY+KR+ Sbjct: 462 VLLELIRTELEEVKERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDS 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQRRGG+G G+ D D+VT L STH ++LFF++ G VY+ + + +P S ++G Sbjct: 522 YRAQRRGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMSRTSKG 581 Query: 616 KALINILSLNQGERITTIMPF----------------------------------PEDES 641 +IN++ + + E++ T++P PE+ Sbjct: 582 VPIINLIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEEPEEAL 641 Query: 642 SWNNLY------VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695 + ++F T+ G V+R+ LS + +IN++G IA++L DE+ SV + E++ Sbjct: 642 DAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLASTEDE 701 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 + + G+ +RFPI+ +R GR + GV+ ++L+ VI M Sbjct: 702 VFTVSNTGKAIRFPITNVRSM-GRGARGVKAMNLSADAIVIGM----------------- 743 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 EL EQ +L ++EKGFGKRT Sbjct: 744 ------------------------------------ELARDEQDVLVITEKGFGKRTPMT 767 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +FR +R GKG+ A+ V+ + +G +VA+ V+ +D I+++++ G +IR I R Sbjct: 768 EFRTQSRGGKGLIASKVT--DRVGQIVALRIVDVDDDIMIMTESGIVIRTDSQNISSVGR 825 Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +GV + + +RV +V ++++ + V+E Sbjct: 826 NAQGVKVIRIEEGDRVATVAKLKKEDAVEE 855 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 22/231 (9%) Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586 M+DE + ++ ++ G VKR PLS Y R G + + ++D +T + + ST Sbjct: 647 MQDE-----QKSLIFMTRKGRVKRSPLSAY--ARINKNGLIAIRLFEDDELTSVRLASTE 699 Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNN 645 V S+ G K R PI + ++ G+ + ++N + I M DE Sbjct: 700 DEVFTVSNTG-----KAIRFPITNVRSMGRGARGVKAMNLSADAIVIGMELARDEQD--- 751 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKL 702 V+ T+ G +R +++F +R GK IA K+ R +I+++ ++DI++ T+ Sbjct: 752 --VLVITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTES 809 Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 G +R I GRN+ GV+ I + +GD+V ++A + DA +E I Sbjct: 810 GIVIRTDSQNISS-VGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIV 859 >gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus agalactiae ATCC 13813] Length = 819 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ + N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ + R+++G Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + +N N Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + I++++D G +IR V I R+T GV + ++ ++V+V + E EI D++ Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812 >gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7] gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7] Length = 819 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/891 (41%), Positives = 554/891 (62%), Gaps = 86/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 EE+GI V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM +G Y Sbjct: 2 EERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ DL +DT+DF PNYDG QEP VL AR PN+L+NG GIAVGMATNIP Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL EV++ +AV +PDI + LME I+GPDFPTG ILG+T IK AY TG G IV+ Sbjct: 182 PHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYILGKTAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G ++ IVVTEIPY VNKA M+EK+++LVREK+I I ++RDES+R G RV Sbjct: 242 RAKTEIEE-KGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ TSLQ+ F N +AL +P+ L ++ ++ +EEV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMITLYLDHQEEVIK 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA DRAH+L GL A+ +D ++ +IR S E + LM+ +N SD Sbjct: 361 RRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLME-EFNMSD---- 415 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 Q +AI E++L RL GL R I ++LN L I + DI Sbjct: 416 ---------------------KQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R RLL II EL +KD+ RRT I++G D+EDED I ED+++++++ GYVKR Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYVKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ Q RGG+G G+ +D V+ L +STH +LFF++ G VY+ K + +P Sbjct: 515 MPVDTYKTQNRGGRGIKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L+L++ E++ +++ + NN Y+ F T G V+R +++F +I Sbjct: 575 RSAKGLPVVNLLNLDKEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++SV+ + IL+ G+ VRF + +R GR++ GV+GI++ Sbjct: 635 QSGKIAISLRDDDQLVSVKLTGGNDQILIAASNGKLVRFEETNVRPM-GRSASGVKGINV 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D E+ + D EG Sbjct: 694 --------------------------------------DGSEVIGMTTDK--EG------ 707 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++I+ V+E+G+GK + ++R+SNR GKG++ + ++ N G +VA+ VN Sbjct: 708 --------KYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERN--GQIVALRAVNG 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ +++++D G +IR+P+ +++ A RAT+GV + + +V SVE + ++ Sbjct: 758 DEDLLIITDDGIMIRLPMEQVKTAGRATQGVRLIKVNAENKVSSVEVVEKA 808 >gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] Length = 883 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/897 (41%), Positives = 552/897 (61%), Gaps = 84/897 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E + D + I ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Sbjct: 1 MAEDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ NK Y K ARI GEV+GKYHPHG++++Y + RMAQ+WSLR L++GQGN+GS+ Sbjct: 61 LNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE RL K A +L D+ KDT+D++ N+D + QEP VL A++PN+LVNG Sbjct: 121 DGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGAS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+ HNL EV++ +A ID+ +I++ LM+ ++GPDFPTG +I G G + A Sbjct: 181 GIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIYGFEGAREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRG I++R + IE + DRE+I+VTEIPYQ+NK+ M+E+ AELV EK++ I+ +R Sbjct: 241 SETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMR 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+R+G RVV E+KR A+A ++LN L++YTSLQ+ FSVN +AL +P L ++ Sbjct: 301 DESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGRPMLLNLKDLIHH 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 FV R EV+VRRTK+ L +A RAH+L GL IA+ +LDEV+++IR S P+ AR LM R Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LS++Q RAIL++ L RLTGL RD I+ E N L Sbjct: 421 --------------------------FNLSDIQARAILDMTLRRLTGLERDKIKAEYNEL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I IL+ + IIK EL+ +K++ RRT+IV +M+ ED I E++V+ Sbjct: 455 MKLIDYLKSILADEGLRMEIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVI 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SH GY+KR PL+ YR Q RGGKG G RD DF+ L I S H +LFF+ G + Sbjct: 515 TISHEGYIKRTPLTEYRTQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFW 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658 +V+ +P G+ ++G+A+ NI+++ + E I + +D N +++ T+ G ++ Sbjct: 575 LRVFEIPEGTRTSKGRAIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIK 634 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + L + + +G A+ ++ D +L T ++I++ K G+ +RF S +R G Sbjct: 635 KTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPM-G 693 Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GVRGI+LA + D+V+ M I+ D E T Sbjct: 694 RTATGVRGITLAGENDEVVGM--------------------------IAIDDAETT---- 723 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L VSEKG+GKRT D+R++NR GKG++ +V++ + Sbjct: 724 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE--K 759 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LVA+ V D +++++ G +IR+ +N++R RAT+GV + S +++ + SV Sbjct: 760 TGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASV 816 >gi|169830227|ref|YP_001716209.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C] Length = 812 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/882 (43%), Positives = 544/882 (61%), Gaps = 86/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ +K + K A Sbjct: 8 IVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ K HPHG+AA+YDAL R+AQD++ R L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 YVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ K+TVDF PNYDG+ +EPVVL +R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 ARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG V + D+PD +L+ LM I GPDFPTG I+GR GI AY TGRGSI +RG + Sbjct: 188 KEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGHAE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G R +IV+TE+PYQVNKA ++EKIA LVREK+I I+DLRDESDR+G RVVIEL+ Sbjct: 248 FERV-GSRTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIELR 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ++ LN LY++T LQ F V ++AL +P+ L IL ++ + EV+ RR +Y Sbjct: 307 REVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITRRCRY 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L++A+ R H++ GL IA+A+LDEV++ IR S + AR LM Sbjct: 367 ELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLM----------------- 409 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLT L RD + NE N L I+ +L+ Sbjct: 410 ---------AGFGLSEKQAQAILDMRLQRLTALERDKLENEFNDLVAAIERLEALLADEQ 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++L ++K+ELL+V+D+ PRRT +V D ED I +ED V+ +++ GY+KR+P SV Sbjct: 461 KILAVVKEELLAVRDKFADPRRTELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSV 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGG+G +GV + +DFV LF+ TH +LFF+ G VY+ KV+ +P QARG Sbjct: 521 YRSQRRGGRGIAGVETKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARG 580 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N++ + GER+T ++P E + ++ T+ G V++ L +F R G IA Sbjct: 581 TAVVNLIPVANGERVTAVIPVTE---YSGDAFLFMVTRKGIVKKTVLQEFDSARRDGLIA 637 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++ V+ ++++LL T+ G +RFP +R GR + GVRGISL +GD V Sbjct: 638 LTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPM-GRTAHGVRGISLREGDMV 696 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + M IV D D++ Sbjct: 697 VGMDIV-----DPDDQ-------------------------------------------- 707 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L VSEKG+GK T +FR+ +R G G+ A VS N G LV++ V ++I++ Sbjct: 708 ----LLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRN--GPLVSLSLVGRGEEILI 761 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VS G LIR+ ++EI R +GV + A + VV+V I Sbjct: 762 VSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWI 803 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 21/219 (9%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 + V+ G VK+ L + + RR G + + + D + D+ I + VL + G Sbjct: 609 FLFMVTRKGIVKKTVLQEFDSARR--DGLIALTLDEGDELVDVKITDGKSEVLLGTRNGM 666 Query: 598 VYKEKVWRLPIGS--PQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKH 654 V R P G P R + +SL +G+ + + + P+D+ L VV + Sbjct: 667 V-----IRFPEGQVRPMGRTAHGVRGISLREGDMVVGMDIVDPDDQ-----LLVVSEKGY 716 Query: 655 GNVRRNKLSDFIQINRSG--KIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPIS 711 G V + +F +R G IA ++ R+ ++S+ + +IL+ +K G +R I Sbjct: 717 GKV--TPVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKID 774 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 I F GR + GVR + LA GD V+++A +L D E Sbjct: 775 EIPQF-GRQAQGVRLMRLAPGDAVVAVAWILPEDPPQGE 812 Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTS 588 D + +D ++ VS GY K P+ +R Q RGG G + V R+ V+ L +V Sbjct: 700 DIVDPDDQLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVS-LSLVGRGEE 758 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM-PFPED 639 +L S G + + K+ +P QA+G + ++ L G+ + + PED Sbjct: 759 ILIVSKSGILIRMKIDEIPQFGRQAQG---VRLMRLAPGDAVVAVAWILPED 807 >gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] Length = 833 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/889 (42%), Positives = 546/889 (61%), Gaps = 90/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDA-----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID+ + + +++II+GPDFPTG +ILG GI+ AY TGRG + + Sbjct: 189 AEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKVRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+V+E+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G RV Sbjct: 249 RAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+A+VILNQLY++T LQ F V M++L +P L+ +L ++ +EEVV Sbjct: 309 CIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNEPRVMNLLDMLNYYLEHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM+R Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+VQ++AI+++RL LTGL R+ + NE L +I E I Sbjct: 421 ------------------LSDVQSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E++ ++D+ RRT I D+ ED I R+D+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEIIIIRDKYGDERRTSIGFDEFDISMEDLIPRQDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ RGGKG G+ +ED+V +LF+ +TH ++FF++ G VY+ K + +P S Sbjct: 523 MSNDTFKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A+IN+L L E+IT ++P E + Y+ +TK G V++ ++D+ + + Sbjct: 583 RTSRGTAIINLLQLMPEEKITAVIPIEEYKEGE---YLFMSTKKGLVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E DI+L TK GQC+RF +R GR S+GVRG++LA Sbjct: 640 TGLAAITLREEDELIEVKYTNNERDIILITKYGQCIRFNERDVRS-TGRTSMGVRGMNLA 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M Sbjct: 699 DRDEVIGM---------------------------------------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L + +L VSEKG GKRT +F NR GKG++ +++ + G +V V V+ + Sbjct: 707 -QLDSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITE--KTGNVVGVKAVDLD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D+I++++ G +IR+ + I R T GV + + E V S+ ++R+ Sbjct: 764 DEIMIINTGGIIIRMKCDNISSLGRVTSGVKLINLPDGETVASIAKVRK 812 >gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49] gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49] Length = 840 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/889 (41%), Positives = 551/889 (61%), Gaps = 85/889 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++G+ + K A Sbjct: 7 LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 67 RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 Q+ + +L D+ K+TVD + N+D + EP VL R P +L+NG GIAVGMATN+P HNL Sbjct: 127 QRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+G +A ID+ +I +D LME I+ PDFPTG +I G G+K+A+ TGRG +V+R + Sbjct: 187 TEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIYGYDGVKDAFHTGRGRVVMRAKAS 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G RE I+V+EIPYQVNKA M++K A+LV EK+I IA++RDESDR G R+V LK Sbjct: 247 FEEVQG-RECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVYILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LN LY+YT+LQS FSVN +AL +P+ L ++ FV R EVVVRRT+Y Sbjct: 306 RDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVRRTEY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KA +RAH+L GL IA N+DEV+R+IR S N + AR L++ Sbjct: 366 LLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIE---------------- 409 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q +AI+E+RL +LTGL +D +R E L I + DIL+++ Sbjct: 410 ----------AFKLTEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + IIK+ELL V+ + RR+ I D+ D I E +V+T+SH GY+KR L+ Sbjct: 460 RRMNIIKEELLEVQRKYGDDRRSVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRTSLTE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P GS ++G Sbjct: 520 YKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + +G Sbjct: 580 RAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPRTNGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ + DE+L + ++ ++L K G+ +RF S R GRN+ GVRGI LA Sbjct: 640 NAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPM-GRNASGVRGIRLADDN 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M + ND E Sbjct: 699 DEVVGMIAI-----------------------------------NDLESE---------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 IL VS+KG+GKR+S D+RI+NR GKG++ +V++ + G LVA+ V D+D Sbjct: 714 -------ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTE--KTGQLVAIKNVIDSDD 764 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++++ G IR+ V+ +R+ RAT+GV + +D+ + +V ++ + E Sbjct: 765 LMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKDE 813 >gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74] gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74] Length = 838 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/901 (41%), Positives = 545/901 (60%), Gaps = 88/901 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + D E I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV Sbjct: 5 TPDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAELGVN 64 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +NK + K ARI GEV+GKYHPHG++++YD + RMAQDWSLR L++GQGNFGS+DGD PA Sbjct: 65 YNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDGDSPA 124 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE RL++ A LL D+ K+TVDF+ N+D S QEP V+ A+ PN+L+NG GIAVGM Sbjct: 125 AMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGIAVGM 184 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATN+ HNL EVVDG +A ++N +I ++ LM+ ++ PDFPTGA I G G+K+A+ TGRG Sbjct: 185 ATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIYGMEGVKSAFKTGRG 244 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +V+R + IE+ G + QI+VT++PY VNKA MLEK AEL+ +K+I I RDESDR Sbjct: 245 RVVMRAHATIEENRG-KTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRDESDRD 303 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVV +L++ A +V+LN LY++T+LQS FS+N VAL +P L ++K +V R Sbjct: 304 GLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGRPMMLNLKDMMKYYVEHRF 363 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+ RRT+Y L +A RAH+L GL IA+ N+D V+ +IR S +PE AR LM+R Sbjct: 364 EVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER------ 417 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +AILE+RL RLTGL RD ++ E + L EI + Sbjct: 418 --------------------FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDELMTEIAD 457 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545 +IL+S R +IK+EL ++ RRT I G ++ D I EDMV+T+SH Sbjct: 458 LKEILASEERKRQVIKEELTDIRARYGDERRTEINPLGDGNISDLSLIADEDMVITISHE 517 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR P + YR+Q RGG G ++EDF LF + H ++L F+ G +Y V+ Sbjct: 518 GYIKRTPTTEYRSQGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYE 577 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLS 663 LP GS ++G+ L N +++ +++ ++ + +E NN Y+V T+ G +++ L Sbjct: 578 LPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLE 637 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + ++G IA+ +D D++L V +NDI++ + G+ VRF S +R GR + G Sbjct: 638 AYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPM-GRTAAG 696 Query: 724 VRGISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 VRGISL + D VI M + DA Sbjct: 697 VRGISLDEEDPTDHVIGMVCISSQDAQ--------------------------------- 723 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L VS+ G+GKR+ +RI+NR KG+ +++ ++G Sbjct: 724 -------------------LLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITE--KVGR 762 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 LVAV V DND +++++ G IR PV+ I + R T+GV + + + + SV +I++ Sbjct: 763 LVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSVTKIKKE 822 Query: 901 E 901 E Sbjct: 823 E 823 >gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] Length = 828 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 90/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 IQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E+V+ V +IDN + +D L+ I++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + QI+VTE+PY VNKA ++EKIAELVR+K+I I D+ D S+R+G R+ Sbjct: 249 RAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I L+R A+A+VILN+LY++T +Q F V M+AL G P+ +L+ +L+ ++A +EEVV Sbjct: 309 CITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLAHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH++ GL A+ +D++++IIR S + A+ LM Sbjct: 369 RRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T SEVQ + I+ +RL +LTG+ R+ + E L I+I+E I Sbjct: 418 ---------------TFDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS R+ LL +I+QE+L++ ++ RRT I D+ ED I +E+ V+ ++ LGY+KR Sbjct: 463 LSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ D+D++ +L + +TH ++FF+S G VY+ K + +P S Sbjct: 523 MTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT ++P E + Y+ ATK+G V++ + D+ + + Sbjct: 583 RTARGTAIINLLQLQPEEKITAVIPINEFKKGN---YLFMATKNGLVKKTPIEDYENVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ + DI+L TK GQC+RF + +R GR S+GVRGI+L Sbjct: 640 TGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMGVRGINLL 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VI M + D Sbjct: 699 EEDEVIGMQLTCQGD--------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L VSEKG GKRTS +F NR GKG++ +++ + G ++ V VN Sbjct: 714 --------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIGVKAVNSE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++I++++ +G +IR+ I I R T GV + D V S+ ++RE E Sbjct: 764 NEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE 814 >gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R] gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909] gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R] gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909] gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] Length = 819 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ + N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ + R+++G Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + +N N Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + I++++D G +IR V I R+T GV + ++ ++V+V + E EI D++ Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812 >gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] Length = 986 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/882 (42%), Positives = 550/882 (62%), Gaps = 93/882 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 +++EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + ++ + K A GE Sbjct: 137 LSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSAWTVGE 196 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+++IY+A+ RMAQD+S+RL LI+G GNFGS+DGDP AA RYTE RL AA Sbjct: 197 VMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRLTHAAM 256 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG GIAVGMATN+P HNL EV Sbjct: 257 DMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNLQEVAR 316 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +IDNP+ L+ LM + GPDFPTG +I+G GIK+AY TGRG++ IR HIE T Sbjct: 317 AVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVHIENTG 376 Query: 261 -GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 R+++V+TEIPYQVNK+ + E+IA+ V EK+I I+D+RDES+R+G R+VI+LK+GA Sbjct: 377 RAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDLKQGAV 436 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN LY+ T LQ+ FSV +AL P +L +++ ++ +++VV RRTK+ L + Sbjct: 437 PQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTKFDLAR 496 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A+ R H+L GL IAV N+DEVV IIR S + A+ + +R IDD Sbjct: 497 AQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFG-----------IDD--- 542 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 +Q AIL++RL RLTGL RD++ +++ L +I D+L + ++L Sbjct: 543 ------------IQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLE 590 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +IK+EL+ + + +PRRT+I + D ED I EDMV+TV+H Y+KR+P++ YRA Sbjct: 591 VIKEELMQIAERYASPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRA 650 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG G+ ++D DFV DLF+ STH VLFF++ G VY+ KV LP+GS +RG AL Sbjct: 651 QKRGGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSAL 710 Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +N+L L + E T ++ FP+ N Y+VFATK G V++ ++++ + R G IA Sbjct: 711 VNVLPLAEDEHPTAVITTRDFPD------NQYLVFATKQGMVKKTAIAEYDKSRRDGLIA 764 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE+++V + N I+L T G+ + F +R + RN+ GV+GISL + Sbjct: 765 INLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRPTS-RNTSGVKGISLKNNAYM 823 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + M EI++ K D Sbjct: 824 LGM--------------------------------EISNGKGD----------------- 834 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L ++E G+GKRT ++ + +R G+G+ T ++ ++ GALVA V ++++ Sbjct: 835 ----LLVITENGYGKRTPISEYSLQHRGGQGV--TTIAMTSKKGALVACRVVGPQHELMI 888 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +S++G +IRV +I + RAT+GV I + + + V ++ R+ Sbjct: 889 MSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVSAMARM 930 >gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316] gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316] gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] Length = 819 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/896 (42%), Positives = 568/896 (63%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS +E+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +++ + N Y F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ T+ G VRF ++A+R GR + GVRG++L Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ + R+++G Sbjct: 693 EGDKVVGAS-----------------------RIVNG----------------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + +N N Sbjct: 707 -------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN--GPLARLVTINGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + I++++D G +IR V I R+T GV + ++ ++V+V + E EI D++ Sbjct: 758 EDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV-EQEIEDKS 812 >gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 814 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/889 (41%), Positives = 563/889 (63%), Gaps = 92/889 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I +V + ++M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EDNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ K A +L D+ KDTVDF PN+D EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D CVA + NP+I ++ L +I+ GPDFPTGA ILG++GIK+AY TGRG + +R Sbjct: 183 PHNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ IE +RE+I+V+EIPYQVNK+ ++EKIA+LV++K+I I+D+RDESDR+G R+V Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ++A+++LN LY+YT L++ F + +AL P+ L +++ ++ ++EVV R Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + + ++ ++ Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q++AIL+++L RL+GL D + E L I L IL Sbjct: 412 ---------------FNLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETISYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +S L+ +I E+ +KD+ RR++I+ EG +D+ E+ I +ED+++T+++ GY+K Sbjct: 457 NSEENLIKLIISEMEEIKDKFSDDRRSKIIPDEGEIDI--EELIEKEDVLLTLTNDGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+SLG VY K + +P G Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEG 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q+RG A+INIL+L GERIT +M E +E S +V TK G +++ + +F I Sbjct: 575 SRQSRGTAIINILNLESGERITEMMTLSELNEDSQ----IVLQTKDGTIKKTEAENFTNI 630 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G IA+ L D+++SV +E +++++TK G ++F +R GR + GVR I Sbjct: 631 RKNGIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSM-GRIAQGVRAIK 689 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA+GD+V+SM I GD Sbjct: 690 LAEGDEVVSMN-------------------------IKGD-------------------- 704 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E ++L V+E GFGK+TS +F+ NR GKG++ V+ ++ G +V PV+ Sbjct: 705 --------ETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVVDTLPVD 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896 ++ I++VS G +IR+ V +I I R T GV + + +D +R+VSV + Sbjct: 755 LDNDIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTK 803 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 9/140 (6%) Query: 763 RLISGDTEEITSLKNDSSVEGNISEE---RCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 +LI + EEI +D I +E +EL KE +LT++ G+ KR +++ Sbjct: 464 KLIISEMEEIKDKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTNDGYIKRLPIDTYKV 523 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 NR GKGI A + E + + N ++ ++ + G + + E+ SR ++G Sbjct: 524 QNRGGKGIAAGNTK---EGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRG 580 Query: 880 VVIFSTAKDERVVSVERIRE 899 I + E S ERI E Sbjct: 581 TAIINILNLE---SGERITE 597 >gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141] Length = 822 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE QT+AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] Length = 824 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/901 (42%), Positives = 555/901 (61%), Gaps = 89/901 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V++T EM+ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 6 ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYK 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGDP AA RYTE Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + LL D+ KDT+DF+ NYDGS +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 126 ARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H LGEV+DG +A+ +PDI + LME I GPDFPT +I+GR+GI+ AY TGRGSI +R Sbjct: 186 HQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSITLRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ S +E I+VTE+PYQVNKA ++E+IAELV EKRI I DLRDESDR G R+VI Sbjct: 246 RVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E++R A+A+VILN LY++T++Q+ F +N++AL +P+ L LK ++ +EEV+ RR Sbjct: 306 EVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVIRRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KA RAH+L GL IA+ ++D ++++IR S + AR LM++ Sbjct: 366 TAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQ------------ 413 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL RLTGL R+ I E L I E +L+ Sbjct: 414 --------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLA 459 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRV 551 ++L II++ELL +K+ + RRT I+ +D +EDED I +E + +T++H GY+KR+ Sbjct: 460 DEEKVLEIIREELLEIKERFNDERRTEIIAASVDQIEDEDLIPQESIAITLTHNGYIKRL 519 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G VYK+K + +P Sbjct: 520 PISTYRSQKRGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPEYGR 579 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L +++ E I T++ + W ++ F TK G +R +++F I + Sbjct: 580 TAKGIPIVNLLEIDKDEWINTMIRVEDFVEDW---FLFFTTKKGISKRTPVTEFANIRTN 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE++SV+ DI++ TK G +RFP + +R GR++ GV+GI+L+ Sbjct: 637 GLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSM-GRSATGVKGITLSG 695 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M I+ D Sbjct: 696 DDEVVGMEILEEND---------------------------------------------- 709 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + I+T + G + S Y RI +R GKG++ +++ N G LVAV V + Sbjct: 710 -----DVLIVTKNGYGKRTKGSEY--RIQSRGGKGLKTCNITSKN--GPLVAVKTVTGEE 760 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE---IVDEAES 908 I+L++ G LIR+ V +I + R T GV + +E V +V ++ + E VD E Sbjct: 761 DIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKDEEENHVDPVEE 820 Query: 909 T 909 T Sbjct: 821 T 821 >gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] Length = 840 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/905 (42%), Positives = 559/905 (61%), Gaps = 95/905 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ NK + K ARI Sbjct: 10 INIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKKSARIV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R L++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 GEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEARMKKI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +L D+ K+TVDF N+D + +EP VL R PN+LVNG GIAVGMATN+ HNL EV Sbjct: 130 SEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPHNLSEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++G A I+N DI+++ LM I+ PDFPTG +I G G+++A+ TGRG +V+R S +E+ Sbjct: 190 INGVNAYINNRDIEIEELMTHIKAPDFPTGGIIYGYEGVRDAFMTGRGRVVMRAKSSVEE 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +G RE I++TEIPYQVNKA M++K A+LV +K+I I+ +RDESDR G R+V LK+ + Sbjct: 250 VNG-RECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVYILKKDS 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +V+LN L+++T+LQS FSVN +AL +P+ L I+ FV R EVV+RRTKYLL Sbjct: 309 LPNVVLNTLFKHTALQSTFSVNNIALVKGRPQMLNLKDIIYNFVEHRHEVVIRRTKYLLR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +RAH+L GL IA N+DEV+ +IR S N E AR +L++R Sbjct: 369 KAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVER------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q +AI+E+RL +LTGL +D +R E + L I I++ DILSS R + Sbjct: 411 --------FQLSEIQVKAIVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRM 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ ELL +K++ RR+ I D ED I E +V+T+SH GY+KR PL Y+ Sbjct: 463 EIIQTELLEIKEKYGDDRRSEINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKI 522 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG G+ RDEDF+ +F + H +LFF+ G + +V+ +P GS ++G+A+ Sbjct: 523 QNRGGVGQKASTTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTSKGRAI 582 Query: 619 INILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 N+++L+ +RI + +E NN YV+ TK G V++ L + + +G A+ Sbjct: 583 QNLMNLDPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGINAI 642 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQV 735 + DE+LS EN ++L + G+ +RF IR GR + GV+GI+LA + D+V Sbjct: 643 SVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPM-GRGAAGVKGITLASEKDEV 701 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I M IC +KN Sbjct: 702 IGM-------------IC---------------------VKNP----------------- 710 Query: 796 KEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E+ +L VSEKG+GKRT D +RI+NR GKG++ +S+ + G LVA+ V+D Sbjct: 711 QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISE--KTGQLVAMKTVHD 768 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVD 904 D ++++ G IR+ V++IR R+T+GV + S D+ + +V +I E+EI D Sbjct: 769 EDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKIINEDEDETEIND 828 Query: 905 EAEST 909 + + T Sbjct: 829 DLDVT 833 >gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] Length = 833 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/900 (42%), Positives = 560/900 (62%), Gaps = 90/900 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD AA R Sbjct: 63 PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ NP++ LM+II GPDFPT I+GR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R S IE+TS +++IV+ EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R Sbjct: 243 LRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R A+ V+LN LY+ T+LQ+ F +N++AL +P+ +L L+ ++ ++ ++ Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +Y+ LSE Q +AIL++RL RLTGL R+ I +E L I E Sbjct: 413 --------NYS--------LSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ ++L II++EL+ +K+ + RRT IV G+ +EDED I E++V+T++H GY+ Sbjct: 457 ILADNEKVLEIIREELIEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S YR+Q+RGGKG G+ ++DFV L STH ++LFFS+ G VY+ K + +P Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + +GE I I+P E DE+S Y+ F T+HG +R LS F Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENS----YLFFTTRHGVSKRTTLSQFAN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+++V E I++ TK G +RF + +R GR + GV+GI Sbjct: 633 IRNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREM-GRTAAGVKGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L++ D V+ M I L DA+ Sbjct: 692 TLSEDDIVVGMEI-LEPDAN---------------------------------------- 710 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L V+E+G+GK T ++R+ R GKG++ ++ N G LV V Sbjct: 711 ------------VLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNN--GPLVTVKAT 756 Query: 848 N--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 N + +++++ G +IR+ V++I R T+GV + +E V +V + +S+ DE Sbjct: 757 NAEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQEDDE 816 >gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/880 (43%), Positives = 537/880 (61%), Gaps = 84/880 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+I ++M +YL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M QMG++ N+ Y KCA Sbjct: 6 IKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEV+ YHPHG+A++Y+AL RMAQ WS+R L+ GQGNFGS D DPPAA RYTE ++ Sbjct: 66 GTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAKM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF PNYD +EPVV AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 AAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ DG + +I+NP+ + L I+RGPDFPTG +I GR GI+N YA GRG IVIR +H Sbjct: 186 HEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRARTH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R I+ TE+PYQVNKA +++KIAEL R+KRI I+++RDESDRQG R+V+ELK Sbjct: 246 IEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ ILN L++YT++QS F+ NM+AL +P+ TL L+ ++ RE+V+ RRT++ Sbjct: 306 RDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRRTQF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H+L GL IA+ NLDEV+ IIR S E +Q+++ Sbjct: 366 ELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFG------------ 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S Q RA+L++RLA L L R + +EL + I +LS + Sbjct: 414 -------------FSNEQARAVLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDIN 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + GII +L +K++ RRT I EG + D +DED I E++VVT++ GY+KR+P Sbjct: 461 EIRGIIMADLKELKEKFGDARRTEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPSG 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YRAQRRGG+G +G+ R++D V L + TH S+LFF+ G V++ +V+ LP S AR Sbjct: 521 TYRAQRRGGRGVTGMATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTAR 580 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+ LIN++S+ Q ER+T I+ P+ + + ++V ATK G V++ +SDF + RSG I Sbjct: 581 GEHLINLISIEQRERVTAIVYVPKGHT---HDFLVVATKKGEVKKTAMSDFEVVRRSGLI 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM L+ DE++ + E D+LL T G +RF + +R A R S GVRGI Sbjct: 638 AMNLEDDDELIGAKLVGPEADVLLITLHGHAIRFGVDQLRS-ASRTSGGVRGI------- 689 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 RL DT + SL ++ + G Sbjct: 690 ----------------------------RLTDDDT--VVSL--NAVIPGG---------- 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V+E G+GKRT ++ NR G G+ + V++ A + DND ++ Sbjct: 708 ----ELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTEKTGKVASARMVTEEDND-LM 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L+S G +IR V+ +R A RAT+GV + + A+D++VV+V Sbjct: 763 LISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAV 802 >gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] Length = 828 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 542/891 (60%), Gaps = 90/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 IQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E+V+ V +IDN + +D L+ I++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + QI+VTE+PY VNKA ++EKIAELVR+K+I I D+ D S+R+G R+ Sbjct: 249 RAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I L+R A+A+VILN+LY++T +Q F V M+AL G P+ +L+ +L+ ++A +EEVV Sbjct: 309 CITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLAHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH++ GL A+ +D++++IIR S + A+ LM Sbjct: 369 RRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMD----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T SEVQ + I+ +RL +LTG+ R+ + E L I+I+E I Sbjct: 418 ---------------TFGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS R+ LL +I+QE+L++ ++ RRT I D+ ED I +E+ V+ ++ LGY+KR Sbjct: 463 LSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ D+D++ +L + +TH ++FF+S G VY+ K + +P S Sbjct: 523 MTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT ++P E + Y+ ATK+G V++ + D+ + + Sbjct: 583 RTARGTAIINLLQLQPEEKITAVIPINEFKKGN---YLFMATKNGLVKKTPIEDYENVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ + DI+L TK GQC+RF + +R GR S+GVRGI+L Sbjct: 640 TGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMGVRGINLL 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VI M + D Sbjct: 699 EEDEVIGMQLTCQGD--------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L VSEKG GKRTS +F NR GKG++ +++ + G ++ V VN Sbjct: 714 --------YLLIVSEKGLGKRTSISEFTRQNRGGKGVKCYKITE--KTGNVIGVKAVNSE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++I++++ +G +IR+ I I R T GV + D V S+ ++RE E Sbjct: 764 NEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDITVASIAKVREKE 814 >gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] Length = 924 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/925 (41%), Positives = 559/925 (60%), Gaps = 35/925 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSNLGK- 713 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 AIR G A + IS + AD + + KH + Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 L D + I+ E + +LT + G+GKRT D+ N+ G+ Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G A + + N G LVA V + D ++L++ G LIR V EIR RA GV + + Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINL 881 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 + E +VS+ER+ E E DE E Sbjct: 882 DEGETLVSLERVAE-EAEDENPEVE 905 Score = 37.7 bits (86), Expect = 9.3, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 9/128 (7%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 + + KV + R A + +++L++GE + ++ E+ N GN Sbjct: 857 KLIRTKVEEI---RETGRAAAGVRLINLDEGETLVSLERVAEEAEDEN---PEVENPEGN 910 Query: 657 VRRNKLSD 664 N +SD Sbjct: 911 EAENAVSD 918 >gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] Length = 918 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/924 (41%), Positives = 561/924 (60%), Gaps = 40/924 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +R + +G + I D + AD + + KH + Sbjct: 715 IR--FNEYWEKSGNDEAEDADIETEVSDGIEDET------ADSENALPSGKH-GVRPSGR 765 Query: 766 SGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 L D + I+ +E L+ +LT + G+GKRT D+ N+ G Sbjct: 766 GSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKNKGG 822 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 +G A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + Sbjct: 823 QGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLIN 880 Query: 885 TAKDERVVSVERIRESEIVDEAES 908 + E +VS+ER+ E DE+ES Sbjct: 881 LDEGETLVSLERVAE----DESES 900 >gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23] gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23] Length = 843 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/891 (41%), Positives = 544/891 (61%), Gaps = 87/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM + + Y KCA Sbjct: 10 IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQPYKKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYTECRL Sbjct: 70 RVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMRYTECRL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL K+TVD PN+D S +EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 130 SKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNPDID + LM+ I GPDFPTGA I G G+K+AY TGRG IV+R + Sbjct: 190 GEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIYGLQGVKDAYETGRGRIVMRAKAE 249 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE SGD ++IVVTEIPY VNKA ++ IA+L + +I +A++ DES RQG R+V++ Sbjct: 250 IE--SGDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGMRIVVDC 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A+V+LN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTK Sbjct: 308 KRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTK 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++RAH+L GL IAV N+DEVV IIR S P A+R L R Sbjct: 368 YDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEAR-------------- 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E+Q++AI+++RLA+LTGL D + E + L I E +IL + Sbjct: 414 ------------FELDELQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNP 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R ++K +L VK++ RRT I+ + ED + +V+T+SH+GY+KR PLS Sbjct: 462 ERCKEVMKADLQEVKEKYGDERRTEIIPFDHEFNAEDFYPDDPVVITISHMGYIKRTPLS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGG G RD DF ++ + H ++LFF+ G Y +K + +P G ++ Sbjct: 522 EFHEQGRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNSK 581 Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+A+ N+L++ + I ++ D N+ YVVFATK G +++ L + + +G Sbjct: 582 GRAIQNMLNIEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPRANG 641 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ ++ D+++ V N++LL + G+ VRF + +RV GR S GV G+ L G Sbjct: 642 VIAININEGDQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVM-GRVSTGVIGMRLDGG 700 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M V ND + E Sbjct: 701 DDEVVGMVCV-----------------------------------NDPNTE--------- 716 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 I+ VSE G+GKR+ D+R ++R KG++ +++ + G LVA+ V D + Sbjct: 717 -------TIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITE--KTGRLVAIKVVTDEN 767 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESE 901 +++++ G LIR+ V ++R+ RAT+GV +I T K++ + SV ++ S+ Sbjct: 768 DLMIINKSGVLIRLKVADVRVMGRATQGVRLINLTKKNDSIASVCKVMHSQ 818 >gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] Length = 818 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/883 (41%), Positives = 552/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D DE Sbjct: 693 EGDKVVGASVV----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + +++++D G +IR V I R+T+GV + +D ++V+ Sbjct: 758 EDLMIITDTGVMIRTSVGNISQTGRSTQGVKVMRLDQDAKIVT 800 Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---STHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK-DE-----RVVSVERIRESE 901 G + R+ EI R KG+ I + K DE +++VE+ R E Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVEQDRSDE 608 >gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] Length = 829 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/905 (41%), Positives = 557/905 (61%), Gaps = 86/905 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T LQ+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE++RIIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ +S V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPNSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + ++ DE Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 906 AESTE 910 + E Sbjct: 818 KSTDE 822 >gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 832 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/891 (43%), Positives = 555/891 (62%), Gaps = 87/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G+ +K Y K A Sbjct: 27 IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD AA RYTE R+ Sbjct: 87 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF NYDGS +EP VL A++P +LVNG GIAVGMATNIP HN+ Sbjct: 147 SKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 206 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G + +IDNPD +D LM +I+GPDFPT +ILG I+ AY TGRG I +R +H Sbjct: 207 VEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRARAH 266 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE S + +I+VTE+PYQVNKA ++EKIAELVR+K+I + DLRDESDR G R+VIEL+ Sbjct: 267 IETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVIELR 326 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++ +VILNQLY++T LQ F V M+AL +P L +L+ ++ +E V+ RRT+Y Sbjct: 327 RDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITRRTRY 386 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ +LD V+ IR S + AR LM Sbjct: 387 ELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM----------------- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 DG L+E Q +AIL+LRL RLTGL R+ I E + I+E IL+ R Sbjct: 430 --------DG-FKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILADRM 480 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++L IIK EL+ V+D+ RRT I +M+ +D I ED+VVT++ Y+KR+PL Sbjct: 481 KVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIPLDT 540 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR QRRGG G G+ ++ D V+DL I +TH +LFF++ G + K + +P QA+G Sbjct: 541 YRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKG 600 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N+L++ ERIT ++ E + + Y+ TKHG V++ LS+F I ++G A Sbjct: 601 TAIVNLLAVENDERITAVIQVKEFRA---DRYLFLGTKHGVVKKTPLSEFGNIRKNGLRA 657 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE++ V+ EN I+L T+ G+ + FP +R GR + GVRGI+LA GD+V Sbjct: 658 VNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEDGVRSM-GRVARGVRGITLADGDEV 716 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++M + L++DS V Sbjct: 717 VAMDV----------------------------------LRSDSEV-------------- 728 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 LTV+E G+GKRT++ ++R R GKG+ V++ + G +V + V +N +++L Sbjct: 729 -----LTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQELML 781 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ +G +IR V+EI + SR T+GV + + A+ +RV S+ + + IVD A Sbjct: 782 ITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATM--NRIVDSA 830 >gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735] gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735] Length = 867 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 541/891 (60%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+A++Y AL RM QDW++R L++GQGNFGS+DGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G G++ AY TGRG IV+R + Sbjct: 192 REVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQG R+VI++K Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTKY Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L +I IL Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VKD+ RRT I + ED + +V+TVSH+GY+KR PLS Sbjct: 465 LCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + I I+ DE N+ YV+FATK+G V++ L + + +G Sbjct: 585 RAIQNMLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ + DE++ V N++++ + G+ VRF + IR GR + GVRG+ L G Sbjct: 645 IAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGGD 703 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M V A+ Sbjct: 704 DEVVGMVTVNEAET---------------------------------------------- 717 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV++ V D + Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEND 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++++ G +IR+ V ++R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 771 LMIINKSGIVIRLVVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16] gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16] Length = 888 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/904 (41%), Positives = 555/904 (61%), Gaps = 65/904 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WN+ Y K Sbjct: 6 KETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL K AH +L D+ K+TVDF NYDGS +EP +L AR PN+L+NG GIAVGMATNIP H Sbjct: 126 RLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E+VDGC+ ++ NP +D L+E+I PDFPT +I G G++ Y TGRG +V+R Sbjct: 186 NLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVVMRAK 245 Query: 254 SHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +H E G R+ I+V E+PYQVNK +LE+IAELV EK+I I+D+RDESD+ G RVVI Sbjct: 246 THFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR +V+LN LY+ T LQ F +NMVAL +P L +L+ F+A R EVV RR Sbjct: 306 ELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+R HVL GLA+A+AN+DE + II+ +P P A++ELM ++W+++ +++++ Sbjct: 366 TVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVREMLA 425 Query: 433 LIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + + + + +DG LS+ Q + IL++RL RLTGL +D I E Sbjct: 426 RAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEY 485 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + I + LDIL+ R+ II EL +++ E RR++I +++ ED I +D Sbjct: 486 RDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTEDLITPQD 545 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVT+SH GY+K P+S YRAQ+RGG+G+ +++D++ LF+ +TH +L FS+ G Sbjct: 546 MVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFSNRGR 605 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 +Y KV+ +P GS +RG+ ++N+ L++GE+I I+P + ++ ++ AT G V Sbjct: 606 LYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEH---FIFMATARGTV 662 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L++F ++G IA+ LD D ++ ++D++L + G+ VRF + +R Sbjct: 663 KKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDVRPM- 721 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVRG++L G VI+M + + + R + +T+ +N Sbjct: 722 GRQARGVRGMNLEDGQTVIAMLVAPAE--------TAEEAEAGMRGSV------LTATEN 767 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 I+E + G G + + S R+G+ + A VS +E Sbjct: 768 GYGKRTPIAE---------------YTRHGRGTK-GMIAIQTSERNGRVVAAALVSPEDE 811 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 I+L++ G LIR V EIR RAT+GV + + + ++ ++RI Sbjct: 812 ---------------IMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSGLQRI 856 Query: 898 RESE 901 ES+ Sbjct: 857 VESD 860 >gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5] gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5] Length = 833 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/900 (41%), Positives = 556/900 (61%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID N D ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +++IE + + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S+R+G R+ Sbjct: 249 RAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +L+ ++ +EEVV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLRLYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ ++DEV++IIR S N + A+ EL+ R Sbjct: 369 RRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIAR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++VQ +AI+++RL LTGL R+ + +E L +I E I Sbjct: 419 ----------------FDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LL +I++E+L + D+ RRT I D+ ED I RE++V+T++ LGY+KR Sbjct: 463 LADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ DED++ +LFI STH ++FF++ G VY+ K + +P S Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+INIL L E+IT ++P E E ++ AT+ G V++ ++D+ + + Sbjct: 583 RTARGTAIINILQLMPDEKITAMIPIKEYEDGK---FLFMATEKGLVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D ++ V+ E DI+L TK GQC+RF +R GR S+GVRG++L+ Sbjct: 640 TGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRA-TGRTSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI+M MS Q D Sbjct: 699 DRDEVIAM------------------QMSTQ----GSD---------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VS+KG GKRT+ +F NR GKG++ +++ + G +V + VN++ Sbjct: 715 ---------LLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITE--KTGNVVGMKAVNED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +I++++ +G +IR+ ++I + R T GV + + A+ + V SV ++R++ + E E Sbjct: 764 SEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASVAKVRKASAEIDGEQVE 823 >gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/886 (42%), Positives = 549/886 (61%), Gaps = 85/886 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L +R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N+++L E+I I+P P+ E S + +VF T++G ++R L++F I + Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFEESKS---LVFFTRNGIIKRTSLNEFSNIRSN 635 Query: 672 GKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DEI++ + E I++ T LGQC+RF + R GR++ GVRGI Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 I V+ AD IS E Sbjct: 695 -----IDTDFVVDADV--------------------------------------ISSE-- 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 710 ------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDDT 761 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + Sbjct: 762 QDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B] gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] Length = 837 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/894 (42%), Positives = 543/894 (60%), Gaps = 88/894 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I++EM+ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K + KCARI Sbjct: 11 VDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKPHRKCARIV 70 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++++YDAL R+AQD+S+R L++G GNFGSVDGD AA RYTE R+ K Sbjct: 71 GDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRYTEARMDKM 130 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A+ ++ D+ K+TVDF PNYDG QEP V+ +R+PN+LVNG GIAVGMATNIP HNL EV Sbjct: 131 ANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG +I+NP+ + LM I+GPDFPT +I+G++GI+ AY TGRG +V+R + IE+ Sbjct: 191 IDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVVVRANATIEE 250 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+VIELKR A Sbjct: 251 DGG-RHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVIELKRDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +VILNQLY++T LQ F + M+AL +P+ L +L ++ F++EV+ RRT++ L Sbjct: 310 NPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKEVITRRTQFELE 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL IA+ N+DEV+ IIR S + A+ L +R Sbjct: 370 KAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQER------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q+ AI+E+RL LTGL R I +EL+ L I + +IL++ + +L Sbjct: 412 --------FALSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKEILANEALIL 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 II+ EL +K RRT I D+ ED I +VVT++ GY+KR+ S Y A Sbjct: 464 NIIRDELNEIKGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIKRIAESTYSA 523 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +++D V ++F+ STH +LFFS+ G VY K + +P A+G + Sbjct: 524 QKRGGKGIQAATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNV 583 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 IN+L L E+I ++ E E S Y+VF TK G +++ L DF I ++G A+ L Sbjct: 584 INLLLLRPEEKIQAVITLSEFEKSQ---YLVFGTKKGIIKKTTLEDFSNIRKNGLNAVGL 640 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE++SV + E+ I++ T+ G +RF +R GR + GV+GISL D V+SM Sbjct: 641 REDDELISVRLSSGEDQIIMVTQNGYSIRFKEEDVRPM-GRTATGVKGISLRDEDNVVSM 699 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 IV D S++ Sbjct: 700 EIV------------------------------------DESMD---------------- 707 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 IL VSE G+GKRT +++ NR G GI VS+ + G +VA VND +I++++ Sbjct: 708 -ILVVSENGYGKRTPIGEYKCQNRGGMGIITYKVSE--KTGKVVAATMVNDEHEIMIINS 764 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAESTE 910 +IR+ EI R+ GV + + +V+++ ++ + EI D E E Sbjct: 765 ADIVIRINSKEISTTGRSAMGVTLMRNNDETKVLAIAKVISDDEEIEDLQEHNE 818 >gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302] gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302] Length = 867 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 541/891 (60%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGS+DGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G G++ AY TGRG IV+R + Sbjct: 192 REVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRGRIVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNK ++E IA+LV+E RI I++ DES RQG R+VI++K Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTKY Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV IIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL D + E L +I IL Sbjct: 416 -----------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VKD+ RRT I + ED + +V+TVSH+GY+KR PLS Sbjct: 465 LCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + I I+ DE+ N+ YV+FATK+G V++ L + + +G Sbjct: 585 RAIQNMLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732 IA+ + DE++ V N++++ + G+ VRF + IR GR + GVRG+ L Sbjct: 645 IAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGVRGMRLDGSD 703 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M V A+ Sbjct: 704 DEVVGMVTVNEAET---------------------------------------------- 717 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++ VSE+G+GKR+ D+R++NR GKG++ +++ + G LV++ V D + Sbjct: 718 -----ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVSIKNVTDEND 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++++ G +IR+ V ++R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 771 LMIINKSGIVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821 >gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V N Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] Length = 843 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/881 (41%), Positives = 543/881 (61%), Gaps = 85/881 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGS+DGD PAA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN DID D LM+ I+ PDFPTG I G +G++ AY TGRG IV+ Sbjct: 182 PTHNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIYGVSGVREAYETGRGRIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE + ++I+V EIPY VNK ++EKIA LV EK++ I+ + DE+DR+G R+ Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T LQS F+VN +AL +P +L +++ FV R EVV+ Sbjct: 301 VIDVKRDANASVVLNKLFKMTELQSSFNVNNIALVHGRPRLLSLKDLIRLFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ RAI+E+RL +LTGL ++ + E L +I +I Sbjct: 411 ----------------FQLTEVQARAIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS+ +IK ELL VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +R Q RGG G G RDEDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L++ +++T + D N+ YV+F TK+G +++ L + + Sbjct: 575 RTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V +NDI++ + G+ +RF +A+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+V+ M IC +K+ Sbjct: 694 LDEDGQDEVVGM-------------IC---------------------IKDP-------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++ I+ +SE G+GKR+ D+R +NR GKG++ ++++ + G LVA+ Sbjct: 712 ---------QKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITE--KTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IR+ V ++RI RAT+GV + K Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLGK 801 Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 6/105 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++ ++T+S G+ KRT DFR +R G G + S+ + + ++P ++ ++ Sbjct: 500 DEMVITISHLGYIKRTPLSDFRTQHRGGVGAKG---SETRDEDFIEHIYPATMHNTLLFF 556 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898 + KG + V EI +R +KG I + D++V + R++ Sbjct: 557 TQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADDKVTAYLRVK 601 >gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE QT+AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] Length = 932 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K A Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ N+DE++ IIR S + A + +R Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L++ QT AILE+RL RLTGL I +EL L I +LS Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK+ELL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q+RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N+L L +GE I+ ++ FP DE Y++FAT+HG V++ + + + R G Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 +V+ M I A D D Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++EKG+GKRT ++ +R G+G+ ++ + G L + V ++D+ Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I+++S++G +R PV+ I R+T+GV + TA +RV +V Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879 >gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] Length = 822 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/891 (41%), Positives = 556/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL I++ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RIAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G +RF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD V+ +++ D DE Sbjct: 693 DGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G+L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ I + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRIAKGLPIVNLLKLDEGESIQTIINVESERSDDA 609 >gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] Length = 818 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/883 (41%), Positives = 552/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDRS--DEAYLFFTTRQGLVKRTNVAEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF + +R GR++ GVRG++L Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ ++V D DE Sbjct: 693 EGDRVVGASVV----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKN--GPLAGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + +++++D G +IR V I R+T+GV + +D ++V+ Sbjct: 758 EDLMIITDTGVMIRTGVANISQTGRSTQGVKVMRLDQDAKIVT 800 Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 9/108 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---STHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK-DE-----RVVSVERIRESE 901 G + R+ EI R KG+ I + K DE +++VE+ R E Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTIINVEQDRSDE 608 >gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] Length = 910 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/897 (42%), Positives = 542/897 (60%), Gaps = 54/897 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD++G R+ I+L Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ +T LQ+ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+DE++ I+ S NP AR L W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLEKA 425 Query: 435 ------------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D + G +D LS Q AILELRL RLTGL +D + E + Sbjct: 426 GAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL + + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMNVIREELALILQQYGDGRRTEIVESGVDFCREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y+AQRRGG+G+S M+D+D + L + S H +VL F+ +G VY+ Sbjct: 546 VSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLCFTDVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 +V+ +P S A+G+ +IN+L L+ E +T I+P FPE N YV AT G V+ Sbjct: 606 RVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFPE------NHYVFMATASGTVK 659 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +L+ F I +G A++L+ D ++ V I+L + G+ +RF + +R G Sbjct: 660 RVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-G 718 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKN 777 R + GVRG M + L A D ++ + I SL Sbjct: 719 RTAKGVRG-----------MRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLSRIVSL-- 765 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 V E C S G+GKRT DF R GKG+ A S+ N Sbjct: 766 --VVVPETGEVLC------------ASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN- 810 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV +++ +++L+SD GTL+R E+ + R +GV + + E +V V Sbjct: 811 -GELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGV 866 >gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] Length = 824 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/886 (42%), Positives = 540/886 (60%), Gaps = 85/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I DEM+ SY+ Y+++VI+GRA+PD RDGLKPVHRRIL M + G+ +K Y K A Sbjct: 24 VVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GK+HPHG+ A+YD+L RM QD+SLR LI+GQGNFGSVDGD AA RYTE R+ Sbjct: 84 RVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRM 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L+D+ K TVDF+PNYDGS +EP VL ++ PN+L+NG GIAVGMATN+ HNL Sbjct: 144 DKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +ID+P+ +L L +I++GPDFPTG +I+G +GIK+AY TGR I +R V+ Sbjct: 204 GEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGTSGIKSAYETGRSPIYLRAVTE 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ D+ +IVV E+PYQVNKA ++E IA LVR+K+I I+DLRDES R+G RVVIELK Sbjct: 264 IEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIELK 323 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+ V+LNQLY+ T L++ F + +AL P L +++ ++ R +V+ RRT + Sbjct: 324 KAANPKVLLNQLYKQTQLETTFGIINLALVDGVPRVLNLRELIQIYLKHRIDVISRRTVF 383 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL +A+ N+DEV+++IR S E AR L+ Sbjct: 384 DLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLIS---------------- 427 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q +AIL+++L RLTGL R I E N L I + DIL++ Sbjct: 428 ----------NFDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDE 477 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R II+ E+L +KD+ RRT I ++ DED I E++VVT + GY+K +PL Sbjct: 478 RKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVVVTSTQSGYIKNIPLQT 537 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGG+G G+ +++D V +F+ STH +LFF++ G VY +KV+ +P GS Q+RG Sbjct: 538 YNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRGSRQSRG 597 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L +GE + ++P + E N+ Y+ T+ G V+R LSDF ++G IA Sbjct: 598 KAIVNLLELAEGESVNAMIPVHDFE---NDRYLFMGTRDGTVKRCSLSDFSNPRKAGIIA 654 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE+++V DI+L ++ G+ +R +RV GR + GVRG+ LA G V Sbjct: 655 ISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVM-GRTARGVRGMKLA-GPDV 712 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I V+ +D Sbjct: 713 IVSLDVVDSDG------------------------------------------------- 723 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +LTV+E GFGKRT ++R R G+G+ N G +V V V D+D+IIL Sbjct: 724 ---TLLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDMRN--GPVVTVKTVEDDDEIIL 778 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 S G ++R+PV +IR+ R TKGV I + + +++VS+ RI++ E Sbjct: 779 TSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLARIKKEE 824 >gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] Length = 822 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] Length = 824 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/897 (41%), Positives = 556/897 (61%), Gaps = 92/897 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCARI Sbjct: 12 IDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+++IY +L MAQ+WS+R L++G GNFGSVDGD AA RYTE RL K Sbjct: 72 GDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ KDTVDF PN+D + +EP V+ ARYPN+LVNG GIAVGMATNIP HNL EV Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPHNLSEV 191 Query: 199 VDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 ++ V +I+N + +D +++I++GPDFPTGA ILG GI++AY TGRG I +R VS Sbjct: 192 INAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTGRGKIKVRAVS 251 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE + +IVVTE+PY VNKA ++EKIAELV++K++ I DLRDES+R+G RVVIEL Sbjct: 252 EIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGMRVVIEL 311 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R +A+VILN+LY++T LQ F VNM+AL +P+ ++ +L+ ++A +E+VV RRTK Sbjct: 312 RRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAHQEDVVTRRTK 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA++RAH+L GL IA+ N+DE+++IIR S N A+ EL++R Sbjct: 372 YDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR-------------- 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+VQ +AI+++RL LTGL R+ + E N L +I+ IL+ Sbjct: 418 ------------FGLSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKIEYFESILADN 465 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +LLG+IK+E+L V+ + RRT ++ +MEDED I +ED+++ ++ LGY+KR+ Sbjct: 466 KKLLGVIKEEILIVEGKYKDDRRTGFIQD-DEMEDEDLIQKEDIIIAMTKLGYIKRMSPD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGGKG G+ D+DF+ D+ + +TH + FF++ G VY K +++P S AR Sbjct: 525 NFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTAR 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N+L L E+I+ I+P E+S Y+ TK G +++ +++ F I ++G Sbjct: 585 GIAIVNLLQLQPDEKISAIIP---SEASSGEGYLFMVTKKGTIKKCRINLFDNIRKNGLA 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ ++D+++ +K G C+R IR GR + GVRG+ L + D+ Sbjct: 642 AINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAM-GRGATGVRGMRLNEADE 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M +L Sbjct: 701 VIGM-----------------------------------------------------QLA 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + +++L VSE G+GKRT +F++ NR GKGI + ++ G LV VN++ +I+ Sbjct: 708 SQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDN--DKTGKLVGAKLVNEDREIL 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAEST 909 L++ +G +IR+ V+ I + RA GV + + + D ++ S+ ++RE + + E + Sbjct: 766 LITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKNTESVEES 822 >gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 844 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/898 (42%), Positives = 555/898 (61%), Gaps = 90/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I+ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL M ++G+ +K + K A Sbjct: 8 LKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF PNYDG EP V+ AR+PN++VNG GIAVGMATNIP HNL Sbjct: 128 SKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E +D AV+D+PDI + LM+ I+GPDFPTG +ILGR+GI+ AY TGRGSI+ R Sbjct: 188 TETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIITRSKY 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+E+ + +IVVTEIPYQVNKA ++ KIA+LVREK++ I L DES+R G R+VIEL Sbjct: 248 HVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ +V++NQL+R TSLQ+ F VNM+AL P++ + +L+ +V + +VVVRRT+ Sbjct: 308 RKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVVRRTQ 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA DRAH+L GL IA+ ++DE++R+IR S N AR LM+R Sbjct: 368 FDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMER-------------- 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q AILE+RL RLTGL RD I NE L I + DIL++ Sbjct: 414 ------------FKLTEIQANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANH 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 SR++ IIK EL VK+ PRRT I E MEDED I ED+V+T++ GY+KR+P+ Sbjct: 462 SRVIQIIKDELTEVKNRFGDPRRTEISEADYSMEDEDLIPVEDVVITMTTNGYIKRMPID 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G G+ + ++D V L +STH ++ F++LG VY+ K +++P A+ Sbjct: 522 TYRTQNRGGRGVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G ++N+L+L++ E++ ++P PE ES Y++F T++G V+R +S+F I ++GK Sbjct: 582 GLPVVNLLNLDKEEKVRALVPVNPESESE----YLLFVTQNGLVKRTPMSEFDSIRQNGK 637 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V+ T +++I++ G+ VRF IR GR + GV+G ++ D Sbjct: 638 IAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRFHEDGIRAM-GRTASGVKGFNV---D 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + + + D H+ A +SE + Sbjct: 694 GSVVVGVATSRDG---------THLLA------------------------VSENGYGKR 720 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E++ LT R KG++ ++++ + G LV+V VN ++ + Sbjct: 721 TAIEEYRLTT------------------RGAKGVKTINITQ--KTGDLVSVRAVNGDEDV 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910 +++++ G +IR+ V I I SR T+GV + + +DE V + + +E E D AE +E Sbjct: 761 MIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEEAEDTAEVSE 818 >gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] Length = 815 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 555/886 (62%), Gaps = 90/886 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Q+G++ NK Sbjct: 3 ENQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+GKDTVDF PN+DG EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + NP+I +D L++ I GPDFPTGA+ILG+TGIK AY TGRG I R Sbjct: 183 PHNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V IE +RE+I+++EIPYQVNKA ++EKIA+LV+EKRI I+D+RDESDR+G R+V Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+KR ++A+++LN LY+YT L++ F + +AL G +P+ L +++ +V ++EVV R Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L++AR+R H++ GL IA+ ++DE+++IIR S + + ++ R Sbjct: 363 RTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ Q++AIL+++L RL+GL + + E L I+ L IL Sbjct: 412 ---------------YKLSDAQSQAILDMQLKRLSGLEIEKLNAENKELADTIEYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +S L+ +I E+ +K++ RRT+IV EG +D+ + I ED+++ ++ GY+K Sbjct: 457 NSEENLINLIIDEITEIKEKYSDERRTKIVPDEGEIDI--TELIEEEDILINLTKDGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+SLG VY + +++P G Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEG 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S +RG+A+INIL+L GE+IT +M E N +V T+ G +++ +F I Sbjct: 575 SRTSRGQAIINILNLETGEKITEMMTLSE---LSKNSQLVLQTQQGQIKKTDAENFTNIR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G IA+ L D+++SV ++ +++++T+ G ++F +R GR++VGVR I L Sbjct: 632 RNGIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSM-GRSAVGVRAIRL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D V+SM I Sbjct: 691 DKDDAVVSMNI------------------------------------------------- 701 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 K +E ++L V+E GFGK+TS +F+ NR GKG+R VS+ + G +V PV+ Sbjct: 702 ----KGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSE--KTGKVVDTLPVDL 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSV 894 + I++VS KG +IR+ ++ R T GV + + A +E +VSV Sbjct: 756 DTDIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSV 801 >gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] Length = 915 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/923 (42%), Positives = 566/923 (61%), Gaps = 46/923 (4%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 S+D + K +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ Sbjct: 4 SNDHQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKNN 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 WN Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +SLR +L++GQGNFGSVDGD A Sbjct: 64 WNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAAA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K AH +L D+ ++TV+F NYDGS QEP+VL R+P +LVNG GIAVGM Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL + + C+ ++ P+ D++ L++II+ PDFPTGA I G TG++ Y TGRG Sbjct: 184 ATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIYGLTGVRAGYQTGRG 243 Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +VIR +H+E SG+RE I+V EIPYQVNKA ++EKI ELVREK I IA+LRDESD Sbjct: 244 RVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDESD 303 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G R+VIELKR +A+VILNQLY+ T LQ F +NMVAL +P L IL F+ Sbjct: 304 KDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQPRLLNLKQILSEFLRH 363 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EVV RRT + L KAR H+ G A+A++N+DE++ +I+ S + E AR L+ R+W + Sbjct: 364 RREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRAWQS 423 Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 S + +++ D + + +DG +LS+ Q RAIL + L LTGL +D+I Sbjct: 424 SLVSEMLGRSDLDLTQARPEWLPENRGLQADG-YWLSDEQARAILRMSLRNLTGLDQDEI 482 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532 E L I + LDIL+ R+ II+ EL+ +K + RR+ I G D+ DED Sbjct: 483 VKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADEDL 542 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I DMVVT++H GY+K P S Y+AQRRGG+G+ +DEDF+ LFI +TH ++ F Sbjct: 543 IPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMCF 602 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVV 649 ++LG + KV+RLP G +RG+ + N++ L++ E+++ I+P FPE+E YV Sbjct: 603 TNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFPENE------YVF 656 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 FAT G V++ +LS F ++ G A+ L D ++ + +DI+L + LG+ +RF Sbjct: 657 FATALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFN 716 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR--RLISG 767 +AG+ A + + + + D D K + R SG Sbjct: 717 ----EYWAGKAD--------AADEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSG 764 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 + +N V ++++ C L+ +LT + G+GKRT D+ + G+G Sbjct: 765 GLRGMRLPENGRIVSLLVAQKNC---GLQ---VLTATANGYGKRTPIDDYPRKGKGGQGN 818 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A + + N G LVA V+ ND ++L++ G LIR V ++R R GV + + + Sbjct: 819 IAINTGERN--GDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKLINLDE 876 Query: 888 DERVVSVERIRESEIVDEAESTE 910 +VS+E + ES+ D+A+ TE Sbjct: 877 GTTLVSIEPVVESDDADDADETE 899 >gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEELDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDSS--DDAYLFFTTRHGIVKRTSIKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEHGRTAKGLPVVNLLKLDEDESIQTVINV-ESDSSDDA 609 >gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] Length = 930 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/934 (40%), Positives = 548/934 (58%), Gaps = 101/934 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M + ++NK Y K Sbjct: 3 ESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYKK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR +++GQGNFGS+D DPPAA RYTE Sbjct: 63 SARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTEV 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K H +L DL KDTVD+ NYDGS + P VL AR PN+L+NG GIAVGMATN+ H Sbjct: 123 RMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ C+A +NP I + LM I GPDFPTG +I GR GI +AY TG+G + +RG Sbjct: 183 NLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIYGRAGILDAYRTGKGRLHVRGR 242 Query: 254 SHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE S DRE+IV TE+PYQ NKA ++E+IAELVR+K+I I+++RDESD+ G Sbjct: 243 YIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDKDGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+EV Sbjct: 303 RIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + LNKAR R H+L GL +A+AN+DE++ I+ S N AR L+ W + + Sbjct: 363 VTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGSGSVV 422 Query: 429 DLI----------DLI--DDSSYTIG---SDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 ++ D I +D G + + LS Q AIL+++L RLTGL +D + Sbjct: 423 AMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLEQDKL 482 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E L EI IL +L+ II E++ ++D RRT I++ +D ED I Sbjct: 483 TEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDLI 542 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 + +V+TVS GY K P+ Y AQ+RGGKG+S M+++D + L + STH +VL F+ Sbjct: 543 PEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCFT 602 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE---------DESSWN 644 G V+ + + +PI S ARG+ L+N++ L+ E +TTI+P P+ + SS + Sbjct: 603 DTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVEELSVKGETSSTD 662 Query: 645 NL-----------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 L +V FAT +G V+R +L F I +G IA+ L+ D+++S Sbjct: 663 ALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSA 722 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 +++L G+ +RF + R GR + GVRG+ L + + S+ + Sbjct: 723 RITNGSQEVMLFASSGKAIRFNENDARAM-GRTAKGVRGMRLTADEFIKSLVV------- 774 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 +E ++ E IL E G Sbjct: 775 ---------------------------------IEDDVRE------------ILIACENG 789 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 FGKRT +F NR G G+ A S N G LV V D IIL+SDKGTL+R PV Sbjct: 790 FGKRTFIDEFNTQNRGGGGVIAIKTSARN--GELVRATKVEPEDDIILISDKGTLVRTPV 847 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + + R T+GV + +KDE++V++ R+ E Sbjct: 848 QHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEE 881 >gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6] gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585] gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B] gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6] gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585] gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B] gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570] gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545] Length = 822 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] Length = 845 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/906 (41%), Positives = 556/906 (61%), Gaps = 89/906 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN DID+D LM I+ PDFPTG I G +G+++AY TGRG +V+ Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE + ++I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+ Sbjct: 242 RAKTEIE-SHPTHDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+L++ T+LQ+ F VN +AL +P+ L +++ FV R EVV+ Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIRLFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ+RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FQLTEVQSRAIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +IK EL+ VK++ RR+ IV + ED ++MV+T+SHLGY+KR Sbjct: 455 LTNEELCKKVIKDELIEVKEKYGDQRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQHRGGVGSKGSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L+++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M IC +KN Sbjct: 694 LDEDGTDEVIGM-------------IC---------------------IKNP-------- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +E+ I+ +SE G+GKR+ D+R +NR GKG++ +++ + G LVA+ Sbjct: 712 ---------QEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITE--KTGKLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEI 902 V D + +++++ G IR+ V +RI RAT+GV + K ++++ SV ++ E E Sbjct: 761 VTDENDLMIINKSGITIRLHVASVRIMGRATQGVRLIDLEKRNDQIGSVCKVTSESEEEN 820 Query: 903 VDEAES 908 VD +S Sbjct: 821 VDNEDS 826 >gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] Length = 921 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/914 (41%), Positives = 556/914 (60%), Gaps = 34/914 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGK- 713 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 AIR G A + IS + AD + + KH + Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 L D + I+ E + +LT + G+GKRT D+ N+ G+ Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINL 881 Query: 886 AKDERVVSVERIRE 899 + E++VS+ER+ E Sbjct: 882 DEGEQLVSLERVAE 895 Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 42/240 (17%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + S ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVE 688 +++ F E++ ++L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAP-EAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAA 840 Query: 689 TCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 T E +D++L T G +R + IR GR + GVR I+L +G+Q++S+ V D Sbjct: 841 TLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGEQLVSLERVAEEPED 899 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESS 642 + + KV ++ R A + +++L++GE++ + + PED S+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGEQLVSLERVAEEPEDASA 902 >gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ] Length = 832 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/884 (42%), Positives = 547/884 (61%), Gaps = 86/884 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+N YL YA++VI+GRA+PD+RDGLKPVHRR L+ M + NK ++K A Sbjct: 18 IAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALYAMYSLNNYHNKPFLKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ L RMAQD+S+R +L++GQGNFGS+DGD AA RYTE R+ Sbjct: 78 RVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFGSIDGDAAAAMRYTEIRM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K + +L DL KDTVD++PNYD S +EP VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 138 KKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ +IDN D+ ++ LM+ I GPDFPT I G GIK+AY TGRG I IR Sbjct: 198 TEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSIHGTEGIKSAYHTGRGIIQIRAKVD 257 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +RE+IV+TE+PYQVNKA ++EKIA+LV K I I+D+RDES R+G RVVI+L Sbjct: 258 IEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGISDIRDESSREGIRVVIDL 317 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G A VI+N+LY+ T LQ F + ++++ P+ L +L+ F+ R EVV+RRT Sbjct: 318 KKGEIASVIVNRLYKATQLQVSFGIIFLSISNGSPKVMNLKEMLECFIDHRREVVIRRTV 377 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA++RAH+L GL +AV N+DEVV I++ S P A+ +L+ R Sbjct: 378 FELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKLISR-------------- 423 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q++AIL++RL RLTGL RD I + ++ EI +IL S Sbjct: 424 ------------FSLSEIQSQAILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSE 471 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + GIIK E + + RRT IV +++ ED + ED++VT++H GY+KR+ + Sbjct: 472 DLIRGIIKTEFQEINENYGDERRTAIVAKADEIQIEDLVKNEDVLVTITHKGYIKRMTMD 531 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q+RGGKG G DEDF TD+F +TH+++LFF++ G V+ +KV+ +P G+ A+ Sbjct: 532 TYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEGTRTAK 591 Query: 615 GKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G+ + N++ + G++I IM PEDE Y++FAT+ G V+++ L+D+ I +SG Sbjct: 592 GRNIANLIPVPPGDKIKEIMCIPPEDEREGK--YLMFATEKGLVKKSALTDYNNIKQSGL 649 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+K+ D + SV D+LL + G+ +RF S R GR S GV+GI++ Sbjct: 650 RAIKVQDGDSVCSVRVSDGTKDVLLCSTSGKIIRFDESDARPM-GRVSQGVKGINI---- 704 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 D DERI M+ + D SVE Sbjct: 705 -------------DDDERIIGMELI-------------------DDSVE----------- 721 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 IL+++E G+GKRT++ +R R GKGI A ++ N G + + PV+D D + Sbjct: 722 ------ILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKN--GEIKQIKPVSDKDDL 773 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++++DKG ++R ++ I + RAT+GV I + E VVSVE+I Sbjct: 774 MVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSVEKI 817 >gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] Length = 918 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/923 (41%), Positives = 564/923 (61%), Gaps = 38/923 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+++R +L++GQGNFGS+ Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 +RF + +G + I D + A AD + + KH + Sbjct: 715 IRF--NEYWEKSGNDEAEDADIETEISDDLEDEA------ADNENALPSGKH-GVRPSGR 765 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 L DS + I+ E + + +LT + G+GKRT D+ N+ G+ Sbjct: 766 GSGGLRGMRLPVDSKIVSLIT--FSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G A + + N G LVA V++ D ++L++ G LIR V +IR RA GV + + Sbjct: 824 GNIAINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINL 881 Query: 886 AKDERVVSVERIRESEIVDEAES 908 + E +VS+ER+ E DE+ES Sbjct: 882 DEGETLVSLERVAE----DESES 900 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 111/243 (45%), Gaps = 44/243 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRGSGGLRGMRLPVDSKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686 +++ F PE E S +L V+ AT +G +R ++D+ + N+ G+ IA+ R+ ++++ Sbjct: 782 VSLITFSPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 ++ +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ V ++ Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEDES 898 Query: 747 DYD 749 + D Sbjct: 899 ESD 901 >gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTVINV-ESDRSDDA 609 >gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323] gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323] gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] Length = 829 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/910 (41%), Positives = 557/910 (61%), Gaps = 91/910 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ DS V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RES 900 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + + Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 901 EIVDEAESTE 910 E DE E E Sbjct: 818 EATDEKEPVE 827 >gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39] gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39] gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] Length = 822 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] Length = 871 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 538/891 (60%), Gaps = 90/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 IHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDI-----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN + D++ L+ I++GPDFPTGA+ILG TGI AY TGRG I + Sbjct: 189 REVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +++IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DLRDESDRQG R+ Sbjct: 249 RAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +V+LN LY++T +Q F V M+AL +P+ L +L ++ +++VV Sbjct: 309 CIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLDHQKDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N A+ L++R Sbjct: 369 RRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++VQ +AI+++RL LTGL R+ I E L I E I Sbjct: 419 ----------------FSLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+I++E+L + ++ RRT I D+ ED I + V+ ++ LGY+KR Sbjct: 463 LADEKKLLGVIREEILLIAEKYGDERRTSIGFDEYDISMEDLIPVTNTVIAMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + L +RAQ RGGKG G+ DED++ +L + ++H ++FF++ G VY+ K + +P Sbjct: 523 MSLDNFRAQNRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L GE+IT ++P E Y+ ATK+G V++ ++D+ + + Sbjct: 583 RTARGTAIINLLQLQPGEKITAVIPIKEYTEGH---YLFMATKNGIVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E DI L TK GQC+RF +R GR S+GV G++L Sbjct: 640 TGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRS-TGRTSMGVIGMNLT 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD+V+ M + DA Sbjct: 699 DGDKVVGMQMESQGDA-------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ VSEKG GK T + +F NR GKG++ +++ + G +V V VN + Sbjct: 715 ---------LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITE--KTGNIVGVKAVNQD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D+++L++ +G +IR+ V++ + R T GV + + A D V S+ ++RE + Sbjct: 764 DEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIAKVREDK 814 >gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] Length = 840 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/892 (40%), Positives = 554/892 (62%), Gaps = 87/892 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G +K Y K ARI GEV+GK Sbjct: 1 MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++Y AL RMAQDW++R L++GQGNFGSVDGD PAA RYTE RL+K ++ Sbjct: 61 YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF+ N+D + QEP V+ R PN+LVNG GIAVGMATN+PTHNL EV+D C+A Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 IDN DID++ LM+ ++ PDFPTG I G +G+++AY TGRG +V+R + IE T + Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMRAKAEIE-THTTHD 239 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+V EIPY VNK ++E IA LV +K+I I+ + DESDR+G R+VI++KR A+A V+L Sbjct: 240 KIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVVL 299 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+L++ T+LQ+ F VN +AL +P+ L +++ FV R +VV+RRT+Y L KA++RA Sbjct: 300 NKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQERA 359 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA N+DEV+RIIR + P A L++R Sbjct: 360 HILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER------------------------ 395 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE+Q RAI+E+RL +LTGL +D + E + +I +ILS+ +IK E Sbjct: 396 --FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDE 453 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L+ VK++ RR+ IV + ED + MV+T+SH+GY+KR PLS +RAQ RGG Sbjct: 454 LVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGV 513 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ A+G+A+ N+L++ Sbjct: 514 GSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNI 573 Query: 625 NQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 + + +T + D N+ YV+F TK+G +++ L + + ++G A+ + D Sbjct: 574 DSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 633 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAI 740 +++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L + GD+VI M Sbjct: 634 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTLDEDGGDEVIGMIC 692 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + +A + I Sbjct: 693 IKDPEA---------------------------------------------------ESI 701 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 + VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V D + +++++ G Sbjct: 702 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSVTDENDLMIINKSG 759 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDEAESTE 910 IR+ V E+RI RAT+GV + + K ++++ SV ++ E E+ DE +T+ Sbjct: 760 ITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTD 811 >gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] Length = 932 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/882 (41%), Positives = 537/882 (60%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K A Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ N+DE++ IIR S + A + +R Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER--------------- 490 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L++ QT AILE+RL RLTGL I +EL L I +LS Sbjct: 491 -----------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQ 539 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK+ELL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ Sbjct: 540 LVHEIIKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q+RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N+L L +GE I+ ++ FP DE Y++FAT+HG V++ + + + R G Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 +V+ M I A D D Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++EKG+GKRT ++ +R G+G+ ++ + G L + V ++D+ Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I+++S++G +R PV+ I R+T+GV + TA +RV +V Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879 >gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4] gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae TIGR4] gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14] gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974] gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2] gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A] gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4] gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14] gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375] Length = 822 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA] gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200] gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA] gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200] gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Streptococcus pneumoniae AP200] Length = 822 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] Length = 865 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/893 (40%), Positives = 549/893 (61%), Gaps = 86/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV N+ Sbjct: 2 QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 KY+K ARI G+V+GKYHPHG++++YDA+ RMAQDWSLR ++GQGNFGS+DGDPPAA R Sbjct: 62 KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL+K + +L DL K+TVDF+ N+D S QEP V+ + PN+LVNG GIAVGMATN Sbjct: 122 YTEARLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E VD A IDN +I +D LM+ I PDFPTG +I G G+++A+ TGRG +V Sbjct: 182 MAPHNLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGIIYGYDGVRDAFHTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + ++ G+R I+VTEIPYQVNKA M+ + AELV++++I I ++RDESDR+G R Sbjct: 242 LRAKVNFDEI-GNRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V ELK A +V+LN LY+YT+LQ+ FSVN +AL +PE+ L I+ FV R EV+ Sbjct: 301 IVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVHGRPEQLNLKDIIHHFVEHRHEVI 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVAN---LDEVVRIIRFSPNPETARRELMQRSWNASD 426 VRRT++ L KA++RAH+L G + LD + IIR S NP+ A+ L++ Sbjct: 361 VRRTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIE------- 413 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +AIL+LRLARLTG+ D IR+E +++ EI Sbjct: 414 -------------------AFELSDIQAQAILDLRLARLTGMELDKIRDEYDAIMKEIAN 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL++ R IIK+ELL +K++ RRT I +M ED I E +V+T+SH G Sbjct: 455 LEDILANEPRRFQIIKEELLEIKEKYGDERRTEIDYSGGEMSIEDIIPNESVVLTISHAG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR LS Y+ Q RGG G RD DF+ + + H +LFF+ G Y +V+ + Sbjct: 515 YIKRTSLSEYKIQSRGGVGNKAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEI 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P GS A+G+A+ N++++ ++I + +D N + VV TK+G +++ L Sbjct: 575 PEGSKTAKGRAVQNLINIEPDDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEA 634 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+++ D++L + I++ TK G+C+RFP +R GR S+GV Sbjct: 635 YSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQIMIATKNGKCIRFPEEKVRE-VGRGSIGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L GD+ I M +V ND Sbjct: 694 RGILLEDGDEAIGMIVV-----------------------------------ND------ 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ + +L VSEKG+GKRT+ D+RI+NR GKG+ ++++ + G L+A+ Sbjct: 713 ----------VENETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITE--KTGNLIAI 760 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D +++++ G IR+ ++E+R+ R T+GV + + K++ + ++ ++ Sbjct: 761 QNVTDEDGLMIINKSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDEIAAIAKV 813 >gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613] Length = 819 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/893 (40%), Positives = 555/893 (62%), Gaps = 86/893 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +IDN D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G R +IVVTEIPYQVNK+ ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-RNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLGDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I++E Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDIIEE 810 >gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GFLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G I ++L + ++T+S +G+ KR +F R G+G++ T V + + LV Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899 + + +D ++ ++KG + R+ +I R KG+ + + K DE + +V + E Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602 Query: 900 SEIVDEA 906 S+ D+A Sbjct: 603 SDRSDDA 609 >gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1] gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1] Length = 853 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/888 (42%), Positives = 542/888 (61%), Gaps = 66/888 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +E+ SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 10 IIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++A+YDAL RMAQD+S+R LIEG GNFGS+D DPPAA RYTECRL Sbjct: 70 RVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTECRL 129 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q A LL D+ ++TVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HN Sbjct: 130 QALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIPPHN 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG VA+I +P + LM I GPDFPTG ILG+ GI+ AY TGRGS+ +R V+ Sbjct: 190 LGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTLRAVA 249 Query: 255 HIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE RE I++TE+PYQ NKAA++EKIAELV EK+I IADLRDESDR G RV Sbjct: 250 TIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDGIRV 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQ F NM+A+ +P+ TL L+ F+ FREE + Sbjct: 310 VIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFREEAIA 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL +A+ANLD V+++IR + + AR++LMQ Sbjct: 370 RRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQ----------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSE Q AIL+++L RLT L + I E L +I + DI Sbjct: 419 ---------------TYALSEAQADAILQMQLRRLTALEAEKIEREHAELQRQIADYRDI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+L II++E+ +K + TPRR+RIV+ ++ D D I + V+ V+ GY+KR Sbjct: 464 LAHRQRVLEIIEKEVTELKAKFATPRRSRIVQADGEISDIDLIANDKSVILVTQQGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ + AQ R G+GR G ++++D V F + H +LFFS G VY +++P GS Sbjct: 524 MPVDTFEAQSRDGRGRKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGS 583 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 QARG ++ +L + + E+IT+++ F EDE Y+V T+ G +++ L+ F Sbjct: 584 RQARGTPIVQLLPIPREEKITSVIAVQEFSEDE------YLVMLTRKGFIKKTPLAAFSH 637 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 I +G IA+ L+ D++ V +++ I++ ++ G + F S ++ GR + GV+ Sbjct: 638 IRSNGLIAISLEEGDQLRWVRRTREQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKS 697 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ++L GD+++ M I+ A A+ + D S E S Sbjct: 698 MNLRPGDELVGMDILPAAIAN-----------------------RFATPSEDDSGEIEDS 734 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 EE + ++L ++ G+GKR FR+ NR+G GI AT + L A+ Sbjct: 735 EETVAH--SEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAALRI 792 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VN D++++V+ +G +IR V +I SR+ GV + +D+ +V+ Sbjct: 793 VNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTA 840 >gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 554/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTVINV-ESDRSDDA 609 >gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] Length = 922 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/877 (42%), Positives = 536/877 (61%), Gaps = 91/877 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 85 EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL + A LL Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EP VL AR+PN+LVNG GIAVGMATNIP HNL E V+ Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 A+ID+P+I D LM+II GPDFPTGAVI+G GI AY TGRGSI +R +HIE T R Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIESTKTGR 324 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPYQVNK ++ EKIA+LV EKR+ I+D+RDES +G R+VIELK+G V+ Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQVV 384 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY++TSLQS F +N +AL P+ +L +L ++A + +VV RRT++ L KAR R Sbjct: 385 LNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKARAR 444 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G IA+ ++DEV+ IIR S A L +R Sbjct: 445 AHILEGYLIALDHIDEVISIIRSSETDAEASARLTER----------------------- 481 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 ++ QT AILE++L RLTGL R I EL++L I+ D+L+ + ++L +IK+ Sbjct: 482 ---FGFTDRQTAAILEMKLRRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKE 538 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + + PRRT I E +++ ED I EDMVVT++H GYVKR+P++ YR+Q+RGG Sbjct: 539 EMREIARKFGDPRRTEIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGG 598 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG SGV ++++D + ++FI STH VLFFS+ G VY+ KV LP+GS QARG A++N+L Sbjct: 599 KGVSGVNLKEDDVIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLP 658 Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +GE+I +++ FP+DE +++FAT+ G V++ +S + + R G IA+ L + Sbjct: 659 FEEGEKIASVISTRDFPDDE------FLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKT 712 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +L V ++ I++ T G+ + F +R GR++ GVRGI L +V+ M Sbjct: 713 DDALLDVRRVRPQDKIIMATTEGKAIMFEQEQVRA-TGRDTSGVRGIDLRGSARVLGM-- 769 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 EIT+ + D + Sbjct: 770 ------------------------------EITNGQGD---------------------L 778 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 ++E G+GKRT D+ +R G+G+ +++ G L A+ V ++ +++ Sbjct: 779 FVITENGYGKRTPVRDYPTQHRGGQGVYTIQMTQRK--GMLAAMKTVGPQHELFIITKGA 836 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 T+IRV EI RAT+GV + + A + V++V R+ Sbjct: 837 TVIRVKTGEISQTGRATQGVKMMNVADGDLVIAVARM 873 >gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] Length = 836 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/897 (43%), Positives = 542/897 (60%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ K A Sbjct: 6 VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ YHPH ++A+YDAL RM Q +SLR L+EGQGNFGSVDGD AA RYTE +L Sbjct: 66 GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ K+TVDF+PNYDG QEPVVL A+ PN+LVNG GIAVGMATNIP HNL Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV DG + +IDNP+ D L+E+I+GPDFPTG VILGR GI+ AYATG+G +VIR +H Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTH 245 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G+R QI+VTE+PYQVNKAA+LEKIAELV+ RI I DLRDESDR G R+VIEL Sbjct: 246 IEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +LN L+++T LQ F VNM+AL +G +P TL +L+ ++ R+EVV RRT Sbjct: 306 KRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR RAH+L GL IA+ +LDEV++ IR S E+AR L+ R Sbjct: 366 EHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINR------------- 412 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +EVQ AIL+++L RL L R I NE L EI ++L+ Sbjct: 413 -------------FGFTEVQANAILDMQLRRLAALERHKIENEYRDLLKEIAGLEELLAD 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +++L +I++EL+ ++D+ RRT I + ++ DED I ++V +++ GYVKR+ Sbjct: 460 PAKILAVIREELVQLRDKFGDERRTLIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIAD 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGG+G +G+ +R+ED V + TH S+LFF+ G V++ KVW LP A Sbjct: 520 GTYRQQHRGGRGVTGMTLREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTA 579 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG +IN++ + GE IT ++P + S+ Y+ T++G V+R +L F + SG Sbjct: 580 RGIPVINLIGIEPGETITALLPVRDFASAR---YLFMCTRNGRVKRTRLDQFASVRSSGL 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L+ DE+ V + ++++L T+ GQ +RF + +R GR + GV GI + GD Sbjct: 637 IAIGLEEGDELAWVRLTSGNDELILVTEQGQAIRFKETDVRPM-GRPAAGVIGIRMEPGD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI+ A V+ D D Sbjct: 696 RVIA-AEVVQPDQD---------------------------------------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L VS G+GKRT+ +FR+ R G+G+ A +++ N G + A V D D I Sbjct: 709 ------LLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERN--GPVAAARVVTDTDSI 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +LVS +G +IRVP +I R T+GV I + ++V SV IR E + A+ E Sbjct: 761 MLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEE 817 >gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT] gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT] Length = 796 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/881 (42%), Positives = 546/881 (61%), Gaps = 93/881 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V +T+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + GV +++ Y K ARI Sbjct: 6 VDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSARIV 65 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+ AIYD + RMAQD+S+R LI+GQGNFGSVDGDPPAA RYTE RL K Sbjct: 66 GDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLSKI 125 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ KDTVDF PNYDGS +EP VL +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 126 AGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLREV 185 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V + +I+NPD + LM IRGPDFPTG I+GR+GI++AY+TGRG+I IR S IE+ Sbjct: 186 VYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSEIEE 245 Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 G R +I+ TE+PYQVNKA ++E IAELV+ R+ I+++RDESDR+G R+V+ELK+G Sbjct: 246 --GRRGSRIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELKQG 303 Query: 318 ASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 + V+LNQL+++T L++ + +N+V ++G +P TL L+ ++ +R EV+ RRT++ Sbjct: 304 VNPQVVLNQLHKHTQLETTYGIINLVLVDG-QPRTLTLKETLEQYINYRAEVIERRTRFE 362 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L +A RAH+L G+ IA+ ++DEV+ +IR SP+P AR LM R Sbjct: 363 LEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNR---------------- 406 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE Q RAIL++RL RLTGL ++ + +E L I IL+SR+ Sbjct: 407 ----------FGLSEEQARAILDMRLQRLTGLEQEKVASEARELESTIARLKGILASRTE 456 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +L IIK EL + + RRT I+E + + ED I E++ V +++ GY+KR PLSVY Sbjct: 457 VLDIIKNELRELDEIYGDDRRTEILESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVY 516 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGGKG G + EDFVTD+F ST ++ F+ G + +V+ +P+ S ARG+ Sbjct: 517 RMQRRGGKGSIGAETKSEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGR 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + ++L L + ERIT +P ES + Y+V AT++G++ + L F R G A+ Sbjct: 577 PIASLLQLEENERITEAIPV---ESFGTDEYIVLATRNGSIVKTPLRAFSNPRRGGIKAV 633 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +++ ++++ TK G+ +RF S +R +GR S+GV+ I+L++GD++I Sbjct: 634 NLRG-DSLVAARLTDGSRELIVATKKGKAIRFHESDVR-SSGRGSMGVKAINLSEGDELI 691 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM +V + Sbjct: 692 SMDVVKEGET-------------------------------------------------- 701 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + T++ +G+GKRT ++ + R GKG++ D + G +VA V+D+D +++ Sbjct: 702 ---LFTITTQGYGKRTELSEYPLQRRGGKGVKNIDTRR----GDVVAAITVSDDDGLLIT 754 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +G +IR+ +++R+ RAT+GV I + + V R+ Sbjct: 755 TKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVARV 795 >gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] Length = 901 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/882 (41%), Positives = 546/882 (61%), Gaps = 93/882 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GE Sbjct: 57 LSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSAWAVGE 116 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL ++A Sbjct: 117 VMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARLTRSAM 176 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L +L K+TVD +PNYD S EP VL AR+PN+LVNG GIAVGMATNIP HNLGEV D Sbjct: 177 EMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEVTD 236 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +IDNP++ + LM ++ GPDFPTG +I+G GIK+AY TGRGSI +R H+E+ Sbjct: 237 AVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVHVEQVK 296 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R+++VVTEIPYQVNK + EKIA+ V EK+I I+D+RDES+R+G R+VI+LKR A Sbjct: 297 SGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLKRDAVP 356 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN LY+ T LQS F + +AL P +L IL+ ++ + +VV RRT++ L+KA Sbjct: 357 QVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTEFDLDKA 416 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 + R H+L GL AV N+DE+V IIR S + A++ + +R Sbjct: 417 QKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNER-------------------- 456 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L E+Q AIL++RL RLTGL R D+ +E++ L ++I D+L+ ++L + Sbjct: 457 ------FGLDEIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAV 510 Query: 501 IKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 I EL + + RRT+I E + +++ ED I EDMVVTV+H GYVKRVP+ +YR+Q Sbjct: 511 IADELREISNRYADKRRTQISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQ 570 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 +RGGKG GV +++ DFV +LF+ STH VLFF++LG VY+ KV LP+GS +G A+I Sbjct: 571 KRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAII 630 Query: 620 NIL-SLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 N++ +L +GE++ ++ FPED Y++FATK G V++ +S++ + + G IA Sbjct: 631 NVIETLAEGEKVKAVITTRDFPEDN------YLMFATKQGMVKKTAMSEYDRTRKDGLIA 684 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE+++V + ++L + G+ + F + R GR + GVRGI+L + Sbjct: 685 INLKDGDELVNVRRVHPGDKVVLCSSDGKAILFDEAEARSM-GRGTSGVRGITLKGNATM 743 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + M EIT+ D Sbjct: 744 LGM--------------------------------EITNGNGD----------------- 754 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + ++EKG+GKRT+ ++ + R G+G+ ++ + G LVA V +I++ Sbjct: 755 ----LFVITEKGYGKRTAISEYPVHKRGGQGVFT--ITMTEKKGNLVACRVVGPQHEIMI 808 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +S++G +IRV +I R+T+GV + + + + V +V R+ Sbjct: 809 MSEEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVARM 850 >gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] Length = 841 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 21 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 81 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 653 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 712 EGDTVVGASLI----TDQDE---------------------------------------- 727 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 728 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 827 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 523 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 579 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 580 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 628 >gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] Length = 869 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/905 (41%), Positives = 561/905 (61%), Gaps = 91/905 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y K A Sbjct: 7 IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNG GIAVGMATN+PTHNL Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+DGC+A ID ++++ LM+ I+ PDFPTGA I G G+K+A+ TGRG I++RG + Sbjct: 187 SEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIILRGKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE T G+ E+I++TEIPY VNKA +++ IA+LV EKRI I+++ DESDR G R+V+++ Sbjct: 247 EIE-TEGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRIVVDV 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A++ V+LN+LY+ T+LQS FSVN +AL +P + L ++KAFV R EVV+RRTK Sbjct: 306 KRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRQLNLKDLIKAFVDHRHEVVIRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA N+DEV+ II+ S +P A LM+R Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q+RAI+E+RL +LTGL +D +R E + I +IL + Sbjct: 412 ------------FSLSEIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILEND 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +IK EL +KD+ R+T IV ++ ED ++M++T+SH+GY+KR PLS Sbjct: 460 DLCMKVIKDELKEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G G RDEDFV ++ S H ++L F++ G Y KV+ +P G+ ++ Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSK 579 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+A+ N+L++ +++ + D N+ Y++F TK G +++ L + + ++ Sbjct: 580 GRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-- 729 G A+ L D ++ V N++L+ + G+ +RF +A+RV GR + GVRG++L Sbjct: 640 GVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGMTLDD 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M Sbjct: 699 DPNDEVVGMV-------------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 C + K KE +L VSE+G+GKR++ D+RI+NR GKG++ ++++ + G LVA+ V + Sbjct: 709 CIKDKEKET-VLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVTE 765 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVDE 905 + I++++ G IR+ V+++ + RAT+GV + + K ++ + SV ++ E EI +E Sbjct: 766 ENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEE 825 Query: 906 AESTE 910 E Sbjct: 826 KAQRE 830 >gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13] Length = 830 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/901 (42%), Positives = 550/901 (61%), Gaps = 87/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 3 ERSSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +LI+G GNFGSVDGD AA RYT Sbjct: 63 KKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 123 EARMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H LGE++DG +AV +PDI + LMEII GPDFPT ILGR+GI+ AY TGRGSI +R Sbjct: 183 PHQLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE RE I+V E+PYQVNKA ++EKIA+LVR+K+I I+DLRDESDR G R+V Sbjct: 243 AKVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+K+ A+A+V+LN LY+ TSLQ+ F +N++AL +P+ L L ++ ++ V+ R Sbjct: 303 MEVKKDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIKR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA RAH+L GL IA+ +LD V+ +IR S + AR LM Sbjct: 363 RTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTE----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q +AIL++RL RLTGL R+ I E L I E IL Sbjct: 412 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYQGLMQLIAELKAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + ++L II++EL VK+ + RRT I V G ++EDED I R+++V+T++H GY+KR Sbjct: 457 ADEEKVLEIIREELTEVKERFNDTRRTEIMVGGFENIEDEDLIPRQNVVITLTHNGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS YR+QRRGG+G G+ + DFV L STH ++LFF++ G VY+ K + +P S Sbjct: 517 LPLSTYRSQRRGGRGIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEFS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L + +GE + I+P + W Y+ F TKHG +R+ LS F I + Sbjct: 577 RTAKGIPIINLLEVEKGEWVNAIIPVEDFVDDW---YLFFTTKHGISKRSPLSQFANIRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ L DE++SV+ ++++ TK G +RF + +R GR + GV+GIS++ Sbjct: 634 GGLIALGLRESDELISVKLTDGTKEMIIGTKKGMLIRFHETDVRSM-GRTATGVKGISIS 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ M ++ DE + + + KN E R Sbjct: 693 ENDEVVGMELL-------DEGL-----------------DVLVVTKNGYGKRTPAEEYRV 728 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q S G G +T + I++R+G+ LV+V V Sbjct: 729 Q------------SRGGKGIKTCN----ITDRNGE---------------LVSVKTVTTE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909 + ++L++ G LIR+ V+ I R T+GV + A++E V +V R+ +E E D E T Sbjct: 758 EDLMLITASGVLIRMSVDGISQMGRNTQGVKLIRLAENEFVTTVARVDKEEEPEDGTEDT 817 Query: 910 E 910 E Sbjct: 818 E 818 >gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P P+ DES +VF T++G ++R L++F I Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + E I++ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I V+ AD IS E Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] Length = 932 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S + EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G N+ ++K A Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD AA RYTE RL Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D ++DNPD+ + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCK 325 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ R IVVTEIPYQVN+ +LEK+ ELVREK++ +I+++ D +DR G ++I+LK Sbjct: 326 VEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLK 385 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A V+LN+LY++T LQ F V M++L P +L +L ++A +EEV+VRRT+Y Sbjct: 386 KDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ N+DEV+ IIR S + A + +R Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER--------------- 490 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L++ QT AILE+RL RLTGL I +EL L +I +LS Sbjct: 491 -----------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQ 539 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK+EL VK + +PRRT + E D++ ED I E MVVT++ GYVKR+P++ Sbjct: 540 LVHDIIKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVAT 599 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q+RGGKG SGV ++D D+V LF+ STH+ +LFFS+ G VY+ KV+ LP S ARG Sbjct: 600 YRQQKRGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARG 659 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A++N+L L +GE I+ ++ FP DE Y++FAT+HG V++ + + + R G Sbjct: 660 TAIVNLLPLEKGETISAVIATKDFPSDE------YLMFATEHGMVKKTSMDLYDRTRRDG 713 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L D ++SV+ +L+ + G+ + + +R GR+++GVRG+++ Sbjct: 714 LIAISLKDNDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPI 772 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 +V+ M I A D D Sbjct: 773 AKVLGMEI---AQPDTD------------------------------------------- 786 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + ++EKG+GKRT ++ +R G+G+ ++ + G L + V ++D+ Sbjct: 787 -------LFVITEKGYGKRTPIAEYPEHHRGGQGVFT--ITMTEKKGLLAVMKIVAEDDE 837 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I+++S++G +R PV+ I R+T+GV + TA +RV +V Sbjct: 838 IMIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAV 879 >gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] Length = 833 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/893 (41%), Positives = 556/893 (62%), Gaps = 94/893 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCARI G+ MGK Sbjct: 1 METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+++IY AL MAQ+W+ R L++G GNFGS DGD AA RYTE RL K + ++ Sbjct: 61 FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV+F PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL E ++ V Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180 Query: 205 VIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +IDN D ++ +MEII+GPDFPTGA ILGR I+ AY TGRG I R VS IE Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATILGRKDIEQAYRTGRGKIKTRAVSEIETM 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + +I+VTE+PY VNKA ++EKIA LV+EK++ I DLRDESD++G RVVIE++R A+ Sbjct: 241 DNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDAN 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 A+VILNQLY++T LQ F V M+AL +P+ L+ +L ++ +++VV RRTK+ LNK Sbjct: 301 ANVILNQLYKHTQLQDSFGVIMLALVDGEPKVLNLLQMLDEYLKHQKDVVTRRTKFELNK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +RAH++ GL IA+ N+DEV++IIR S A++ L++R Sbjct: 361 AEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIER------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LS+ Q++AI+++RL +LTGL R+D+ E L +I IL+ ++LL Sbjct: 402 -------FGLSDAQSQAIVDMRLRQLTGLAREDLEAEYADLMAKIDYLKSILADENKLLT 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +IK+E+ ++D+ RRT+I + D+ DED I ED VV +++LGY+KR+ + +++Q Sbjct: 455 VIKEEIEVIRDKFGDERRTKIGINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQ 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RGGKG G+ D+DF+ D+F+VSTH +LF ++ G +YK K + +P ARG A++ Sbjct: 515 NRGGKGIKGMQTIDKDFMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L L GE+I+ ++ E E + Y++ ATK G +++ + + I +SG A+ L Sbjct: 575 NLLQLQPGEKISAMVQMKEFEE---DKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLR 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 DE++ V ++I+L TK GQ ++F + +R GR+++GVRGI L + D+VISM Sbjct: 632 EDDELIDVTISDNNDNIMLITKKGQGIKFRETDVRE-TGRSAMGVRGIELNQDDEVISMQ 690 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 + S+ C Sbjct: 691 LE--------------------------------------------SQGEC--------- 697 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L VS G GKRT DF++ NR GKG++ +S ++ G +V VND ++I++++++ Sbjct: 698 VLIVSANGMGKRTPFTDFKLQNRGGKGVKCYKIS--DKTGEVVGAKAVNDGNEIMMITNE 755 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTA-KDERVV-SVERIRESEIVDEAESTE 910 G +IR+ V++I I R T GV + +T KD+ VV S+ +++ES V EA++ E Sbjct: 756 GIVIRMFVDDISILGRVTLGVKLMNTGDKDDIVVASITKVKES--VTEADALE 806 >gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] Length = 884 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/877 (43%), Positives = 548/877 (62%), Gaps = 59/877 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 5 EERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+R LI G GNFGS+D DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYTE 124 Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL+ + +L D+ +TV+F N+DGS QEP+VL AR P +L+NG GIAVGMATNIP Sbjct: 125 CRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+VDG VA+I NP+I LM+ I GPDFPTGA ILGR+GI+ AY TG+GSI +R Sbjct: 185 PHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITMR 244 Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE + +RE I++T++PYQ NKAA++EKIAE+V +KRI I+D+RDESDRQG Sbjct: 245 GVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+EL+R A V+LN LY+ T LQS F NM+AL +PER TL LK F+ FR E Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRVE 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y L KA++R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 365 TIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIER------- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSEVQ AIL+++L RLT L I+ E L I + Sbjct: 418 -------------------FELSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R R+L II+ E + +K+ +PRRT I ++ED D I E ++ V+ GY Sbjct: 459 QDILARRERILDIIESEAIELKERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + AQ R +G+SG M+++D + H S+LFFS G VY K +++P Sbjct: 519 IKRMPVNTFDAQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + S ARG ++ +L + + ERIT+++P F +DE Y+V TK G +++ +LS Sbjct: 579 VASRTARGVPIVQMLPIPKQERITSVVPVSEFSDDE------YLVMLTKGGYIKKTELSA 632 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 F I +G IA+ L DE+ V ++ I++ ++LG + F ++ GR + G Sbjct: 633 FSNIRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRG 692 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ + L K D++ISM I+ A +S+ +L S +T +I + + Sbjct: 693 VKSMKLGKKDELISMDILPSA------------IVSSIAQLESEET-DIEDEEVLETETE 739 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + E QEL I+ ++ G+GKR FR+ NR+GKGI AT + +V Sbjct: 740 ETTVENNQELA-----IMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVG 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + VN++++++L++ +G +IR VN I SR+ GV Sbjct: 795 LQVVNEDNELMLITSRGIIIRQAVNAIPTQSRSATGV 831 >gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri] gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] Length = 860 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P P+ DES +VF T++G ++R L++F I Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + E I++ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I V+ AD IS E Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159] gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159] Length = 836 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/877 (43%), Positives = 533/877 (60%), Gaps = 86/877 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+GM +MG+ N KY K A I Sbjct: 17 ISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNAKYRKSAGIV 76 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+ YHPHG++A+YDAL RM Q +++R LI+GQGNFGSVDGD AA RYTE RL Sbjct: 77 GEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMRYTEARLAPI 136 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K TVDF PNYD S +EP VL AR PN+LVNG GIAVGMATNIP HNLGEV Sbjct: 137 AEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATNIPPHNLGEV 196 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VD V +IDNP+ ++ L+E + GPDFPTG +ILGR GI AYATGRG IV+R +HIE+ Sbjct: 197 VDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIVVRARAHIEE 256 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 T R I+VTE+PYQVNKAA++E+IAELV+ R+ I DLRDESDR G R+VIELKR A Sbjct: 257 TGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMRIVIELKRDA 316 Query: 319 SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +LN L+++T LQ+ F VNM+AL +G P TL +L+ ++ R++V+ RRT++ L Sbjct: 317 QPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQVIRRRTEFDL 376 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +A RAHVL GL IA+ +LDEV+ IR + + E AR++LM R Sbjct: 377 RQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMAR----------------- 419 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+E+Q AIL+++L RL L R I +E L I E +L+ +++ Sbjct: 420 ---------FNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKI 470 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L ++++ELL +K+ PRRT+I E ++ DED + R D++VT++ GYVKR +R Sbjct: 471 LAVVRKELLELKERYGDPRRTQIQEASSEISDEDLVPRVDVIVTLTSRGYVKRSTNGHFR 530 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGG+G +G+ +RDED + + + STH S+LFF++ G V++ + LP ARG Sbjct: 531 VQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLP 590 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N L+L GE +TT++P D S+ L+ F T+ G V+R +L +F + SG IAM Sbjct: 591 IVNFLNLQPGEEVTTLLPV-RDFSTATFLF--FCTRQGRVKRVRLEEFSNVRASGLIAMS 647 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 LD+ DE+ V + ++++L T GQ +RFP +R GR + GV G+ L +GD VI+ Sbjct: 648 LDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPM-GRQAGGVIGVRLDEGDAVIA 706 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 +V EG++ Sbjct: 707 AEVV--------------------------------------RPEGDL------------ 716 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 L VS+ G+GKRTS +FR R G G+ A V+ G + A + D ++LVS Sbjct: 717 ---LLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTP--RTGHVAAATVAREEDTVVLVS 771 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +G +I VPV +I R T+GV + + + V SV Sbjct: 772 RRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASV 808 >gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] Length = 853 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID N + ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S R+G R+ Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ +EEVV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ +AI+++RL LTGL R+ + E L +I+E I Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+++GY+KR Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K + +P Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT +P E E Y+ ATK G V++ + D++ + + Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D ++ V+ DILL TK GQC+RF +R GR S+GVRG++L+ Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D++I M MS+Q + Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRTS +F NR GKG++ +++ + G +V + V++ Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901 +I++++ +G +IR+ ++I R T GV + + + ERV SV ++R E E Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAKVRTASAEIDGEEVE 823 Query: 902 IVDEAESTE 910 I +E +S E Sbjct: 824 IKEEDDSPE 832 >gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] Length = 829 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/910 (41%), Positives = 557/910 (61%), Gaps = 91/910 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+IVV+E+PY VNK+ +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ DS V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RES 900 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ + + Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817 Query: 901 EIVDEAESTE 910 E DE E E Sbjct: 818 EATDEKEPVE 827 >gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae] Length = 822 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] Length = 834 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/889 (40%), Positives = 551/889 (61%), Gaps = 90/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ K+TVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+DG V +IDN D L+ ++++I+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 KEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTHGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D S+R+G R+ Sbjct: 249 RAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+LK+ A+A+V+LNQLY++T LQ F V M+AL +P+ L+ +LK ++A +EEVV Sbjct: 309 CIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQPKIMNLLEMLKHYLAHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA++RAH+L GL A+ N+DEV+RIIR + P+TA+ +LM+R Sbjct: 369 RRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ +AI+++RL LTGL R+ + E L +I++ I Sbjct: 419 ----------------FGLTEVQAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R+ LL ++++E+L + ++ RRT+I D+ ED I +++ V+T++ LGY+KR Sbjct: 463 LADRNLLLRVVREEILLISEKYGDDRRTQIGFDEFDISMEDLIPKQNTVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ + D++ +L + +TH ++FF++ G VY+ K + +P Sbjct: 523 MTVDNFRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L GE+IT ++P + E Y++ TK G V+R + D+ + + Sbjct: 583 RTARGTAIINLLQLAPGEKITAVIPLNKFEEGK---YLMMVTKKGLVKRTPILDYEHVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ + I+L TK G C+RF + +R GR S+GVRG++L+ Sbjct: 640 TGLAAIVLRDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRS-TGRVSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ M + D Sbjct: 699 DSDEVVGMQLDTQGDC-------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRTS +F NR GKG++ +++ + G ++ V VN+ Sbjct: 715 ---------LLFVSEKGMGKRTSISEFTCQNRGGKGVKCYKITE--KTGNVIGVKAVNEE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++++++ +G +IR+ ++I + R T GV + + + +V SV ++RE Sbjct: 764 NEVMMITTEGIIIRLQCSDISMLGRITSGVKLINLDEGVKVASVAKVRE 812 >gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] Length = 853 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID N + ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S R+G R+ Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ +EEVV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ +AI+++RL LTGL R+ + E L +I+E I Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+++GY+KR Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K + +P Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT +P E E Y+ ATK G V++ + D++ + + Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D ++ V+ DILL TK GQC+RF +R GR S+GVRG++L+ Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D++I M MS+Q + Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRTS +F NR GKG++ +++ + G +V + V++ Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901 +I++++ +G +IR+ ++I R T GV + + + ERV SV ++R E E Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAKVRTASAEIDGEEVE 823 Query: 902 IVDEAESTE 910 I +E +S E Sbjct: 824 IKEEDDSPE 832 >gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 841 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 21 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 81 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 653 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 712 EGDTVVGASLI----TDQDE---------------------------------------- 727 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 728 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 827 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 523 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 579 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 580 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 628 >gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] Length = 822 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G I ++L + ++T+S +G+ KR +F R G+G++ T V + + LV Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899 + + +D ++ ++KG + R+ EI R KG+ + + K DE + +V + E Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602 Query: 900 SEIVDEA 906 S+ D+A Sbjct: 603 SDRSDDA 609 >gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] Length = 852 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/894 (42%), Positives = 553/894 (61%), Gaps = 92/894 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E G+ ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ERPSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 GYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + LL DL K+TVD+R NYDG +EP+VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H+LGE +D +A+ DNP I + LME I GPDFPTG +ILGR+GI+ AY TG+GS++ Sbjct: 183 IPPHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVL 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR V IE +E I+V EIP+QVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 IRSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R ASA V+LN LY+ T++Q+ F +NM+AL +P+ +L IL ++ ++ V+ Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA DRAH+L GL IA+ ++D ++ +IR S E AR LM +N Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMT-DFN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q++AIL++RL RLTGL RD I E +L I+E Sbjct: 416 -------------------LTERQSQAILDMRLQRLTGLERDKIEEEYQALVKLIEELRY 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548 IL++ R+L IIK+E+L +KD RRT I G +M EDED I E V+T++H GY+ Sbjct: 457 ILANEYRILEIIKEEMLEIKDRFSDKRRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + YR+Q+RGG+G G+ ++DFV L STH ++LFF++ G VY++K +++P Sbjct: 517 KRLPANTYRSQKRGGRGVQGMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 A+G L+N+L +++ E++T ++ F ED + F T+ G +R ++++ Sbjct: 577 YGRTAKGLPLVNLLEISKEEKVTAVIRVKEFKEDS------FFFFTTREGLSKRTPVTNY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G IA+ L DE++SV+ ++++ TK G +RFP + IR GR + GVR Sbjct: 631 ANIRQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSM-GRTASGVR 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD V+ M I+ D + + + K Q T+E Sbjct: 690 GIRLREGDAVVGMEIL---DPNDNVLVITEKGYGKQ-------TKE-------------- 725 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 SE R Q +R G GI+ ++ N G LVAV Sbjct: 726 SEYRVQ-----------------------------SRGGMGIKTCQITDKN--GPLVAVR 754 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 VN + I+L++ G LIR+ VN+I R+T+GV + DE V +V ++++ Sbjct: 755 TVNGTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKK 808 >gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] Length = 885 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/737 (48%), Positives = 495/737 (67%), Gaps = 20/737 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ +WNK Y K A Sbjct: 8 ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +S+R L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVD+ NYDG+ + P VL R PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A+I + I +D LM + GPDFPTGA+I GR GI AY TGRG I +R + Sbjct: 188 REVVNACLALIGDAHISIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYVRARAE 247 Query: 256 I---EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + EKT R+ I+V EIPYQ+NKA ++E+IAELV+EK++ I++LRDESD+ G RVVI Sbjct: 248 VITDEKTG--RDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 EL++G DV+LN LY TSLQ++F +NMVAL +P L IL+AF+ R EVV RR Sbjct: 306 ELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVVTRR 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T +LL KAR+R HVL GLAIA+AN+D+V+ +++ SP+P AR L+ W ++ +++ Sbjct: 366 TLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSMLE 425 Query: 433 LI-------DDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 D+ G DG LS Q +AIL+LRL RLTGL + + E EI Sbjct: 426 RAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLAEI 485 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + LDIL R RLL +I++EL + E RRT I + D+ ED I ED VVT+SH Sbjct: 486 ADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSH 545 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY K PL+ Y+ QRRGG G++ + ++DEDFV L I +TH ++L F++LG VY KV+ Sbjct: 546 GGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWIKVY 605 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 ++P+ +RG+ ++N+L L++GER+T+I+P E ++ ++ AT G V++ L+ Sbjct: 606 QIPVAGRSSRGRPMVNLLQLDEGERVTSILPL---EEHSDDRFIFMATAQGYVKKTDLAS 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F RS + + D++L T N D++L + G+ RF SA+R GR S G Sbjct: 663 FAP--RSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAM-GRASRG 719 Query: 724 VRGISLAKGDQVISMAI 740 VRGI+LA G ++IS+ + Sbjct: 720 VRGINLADGHRMISLLV 736 Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust. Identities = 69/324 (21%), Positives = 123/324 (37%), Gaps = 78/324 (24%) Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE 693 PED VV + G + L+++ Q+ R G K A+ + D + + Sbjct: 536 PEDR-------VVTLSHGGYAKTQPLAEY-QVQRRGGMGKAALSVKDEDFVEHLLIANTH 587 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + +L T LG+ + I V AGR+S G ++L + D+ + +L + D+R Sbjct: 588 DTLLCFTNLGKVYWIKVYQIPV-AGRSSRGRPMVNLLQLDEGERVTSILPLEEHSDDRFI 646 Query: 754 YMKHMSAQRRLISGDTEEITS---------LKNDSSVEGNISEERCQELKLKEQFILTVS 804 +M +AQ + D L D + G + Q+ ++ S Sbjct: 647 FMA--TAQGYVKKTDLASFAPRSAGLRAIVLGEDDVLVGTAITDGNQD-------VMLFS 697 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-------------------------- 838 +G R S R R+ +G+R +++ + + Sbjct: 698 SEGKATRFSESAVRAMGRASRGVRGINLADGHRMISLLVPDARGTVLTVSENGYGKRTTV 757 Query: 839 ----------------------GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 G LV V D+++L+S++GTL+R +++ R Sbjct: 758 DDFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRN 817 Query: 877 TKGVVIFSTAKDERVVSVERIRES 900 T+GV I T + E +V VERI +S Sbjct: 818 TQGVRIIRTKEGETLVRVERIVDS 841 Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 20/196 (10%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVK+ L+ + + G +V+ ++D + I + V+ FSS G K R Sbjct: 653 GYVKKTDLASFAPR---SAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEG-----KATR 704 Query: 606 LPIGSPQARGKALINILSLN--QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +A G+A + +N G R+ +++ P+ + V+ +++G +R + Sbjct: 705 FSESAVRAMGRASRGVRGINLADGHRMISLL-VPDARGT-----VLTVSENGYGKRTTVD 758 Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 DF R GK IAM R+ ++ ++++L + G VR + GRN Sbjct: 759 DFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVRTQCDQVSQL-GRN 817 Query: 721 SVGVRGISLAKGDQVI 736 + GVR I +G+ ++ Sbjct: 818 TQGVRIIRTKEGETLV 833 >gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis] gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis] Length = 916 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSI +R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] Length = 846 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/889 (41%), Positives = 548/889 (61%), Gaps = 90/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + K A Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+D V +IDN D ++ ++EII+GPDFPTG ILG GI+ AY TGRG I + Sbjct: 189 REVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S R+G R+ Sbjct: 249 RAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ +A+V+LNQLY++T LQ F V M+AL G +P+ ++ +L ++ +E+VV Sbjct: 309 VIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVGKQPKVMNILELLGYYLKHQEDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA++RAH+L GL IA+ N+DEV+RIIR S + A+ ELM++ Sbjct: 369 RRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEK---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L +VQ +AI+++RL LTGL R+ + E L +I+ I Sbjct: 419 ----------------FELDDVQAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LLG+I++E+L +KD+ RRT I D+ ED I +E++V+T++ LGY+KR Sbjct: 463 LADEKLLLGVIREEILVIKDKYGDDRRTSIGFDEYDISMEDLIPKENIVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ RGGKG G+ DED+V +LF+ +TH ++FF++ G VY+ K + +P S Sbjct: 523 MSDDTFKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A+IN+L L GE+IT ++P + + Y++ ATK G V++ L +++ + + Sbjct: 583 RTSRGTAIINLLQLMPGEKITAVIPI---DYYRDQDYLIMATKKGLVKKTSLREYMNVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ +I+L TK GQC+RF + +R GRNS+GVRGI+LA Sbjct: 640 TGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRA-TGRNSMGVRGINLA 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D DE I Sbjct: 699 ----------------DRDEVIG------------------------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L + +L VSEKG GKRT ++F NR GKG++ +++ + G ++ + V+++ Sbjct: 706 MQLVTQGHDLLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITE--KTGNVIGIKAVDED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 D+I++++ G +IR+ + I + R T GV + + E V S+ ++R+ Sbjct: 764 DEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVASIAKVRD 812 >gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V N Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] Length = 859 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/897 (41%), Positives = 550/897 (61%), Gaps = 86/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RR ++ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L L A N+DEVVRIIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 E+Q+RAI+++RL++LTGL D + E L IK+ +IL++ Sbjct: 416 -----------FEFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 465 RCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+LSL G+ + + +D+ ++ YVVFATK G V++ L + + +G Sbjct: 585 RAIQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ ++ DE++ V N++++ + G+ RF S IR GR S GVRG+ L + Sbjct: 645 IAININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V ND E Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LVA+ V D++ Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDN 770 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907 +++++ G +IR+ V E R+ RAT+GV + + AK V+ SV ++ SE+ + E Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMESQVE 827 >gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS] gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS] Length = 826 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/896 (41%), Positives = 542/896 (60%), Gaps = 88/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K Y K A Sbjct: 6 ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL A PN+LVNG GIAVGMATNIP HN+ Sbjct: 126 KAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIPPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV G +A+I+NP+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR + Sbjct: 186 REVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAV 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR+G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVLRRTQ 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LN A RAH+L GL I + NLDEV+ IR SP+ A+ LM R Sbjct: 366 YDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDR-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E Q++AILE+RL RLTG+ R I +E I+E IL S Sbjct: 412 ------------FGLTEAQSKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ + IIK ELL V D RRT + D ED I +ED+V+T++H G++KR P+S Sbjct: 460 AKQMEIIKAELLKVSDVYGDERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G +G ++EDF+ +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L GE+I T + + +++ AT G V++ L ++ R+G Sbjct: 580 GRSLANIMELPPGEKIRTYINVRNFDDPH---FIIMATAKGIVKKTSLEEYSHPRRTGIN 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ +D DE++ ++ I+L G VRFP S +R GR ++GV+GI+L + ++ Sbjct: 637 AITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLDEDER 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ISM +T+ +ND+S Sbjct: 696 CISM---------------------------------VTTKRNDTS-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ G+GKR+ D+R++ R +G+ + +IG LV + VND D +I Sbjct: 709 -----LLAVTDNGYGKRSKVEDYRMTKRGARGV--ITIKAHEKIGNLVGLLDVNDEDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++ G +IR V++IR+ R T GV + +R+ + R+ +S D+ +TE Sbjct: 762 IITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKS---DDDSATE 814 >gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] Length = 822 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL ++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDTYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.] Length = 848 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/893 (40%), Positives = 552/893 (61%), Gaps = 85/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ Y K A Sbjct: 7 VIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GK+HPHG+ ++YD++ RMAQ+WS+R ++++GQGNFGSVDGD PAA RYTE R+ Sbjct: 67 RIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEVRM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK + +L D+ KDTVD R N+D + QEP VL R PN+LVNG GIAVGMATN+ HNL Sbjct: 127 QKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G +A I+N +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+R + Sbjct: 187 TEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIYGYDGVRDAFHTGRGRIVMRAKAI 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ G RE I+VTEIPYQVNKA M++K AELV +K+I I+++RDESDR G R+V LK Sbjct: 247 VEEVKG-RECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVYILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LN+L++YT LQ+ FSVN +AL +PE+ L ++ FV R EVVVRRT++ Sbjct: 306 RDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVRRTEF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA N+DEV+ IR S N + AR +L+ R Sbjct: 366 DLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVR--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q +AI+E+RL +LTGL +D +R E +++ + I + DIL++ Sbjct: 411 -----------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEP 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R IIK+EL +KD+ RR+ I DM ED I +VVT+S+ GY+KR L Sbjct: 460 RRYDIIKEELAHIKDKYGDERRSIIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRTNLEE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG+G+ G R+EDF+ LF+ + H ++FF+ G V+ +V+ +P G +G Sbjct: 520 YKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGKNTKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++++ +++ + + DE N+ YV+ ATK G V++ L + + +G Sbjct: 580 RAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732 A+ + DE+L + T ++ ++L G+ +RF + R GR + GVRGI+L + Sbjct: 640 NAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITLQHEN 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI M V ND Sbjct: 699 DEVIGMVAV-----------------------------------NDM------------- 710 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E IL VSEKGFGKR+ D+R++NR GKG++ ++S+ + G LVA+ V+D++ Sbjct: 711 ----ESNILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISE--KTGNLVAIKNVDDSND 764 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++++ G IR+ V ++R+ RAT+GV + + + + +V ++ E V+E Sbjct: 765 LMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEE 817 >gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710] gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568] gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304] gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399] gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385] gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196] Length = 916 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] Length = 820 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL +++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLREILGSYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV++IIR S A+ ELM + Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ G +L +EDED I ++++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSLEDEDLIEETNVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ +D S + Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDDGESIQTIINVAQDRSE--DAYLFFTTRSGLVKRTSVAEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF S +R GR++ GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESVVRNM-GRSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ +++ D DE Sbjct: 693 PGDQVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ +V+ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTRADEYPTKGRGGKGIKTANVADKN--GPLAGLMTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++++++ G +IR V I R+T GV + +D ++V+ ++ E Sbjct: 758 EDLMIITNTGVMIRTSVANISQTGRSTMGVKVMRLDQDAQIVTFTTVQADE 808 Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust. Identities = 43/207 (20%), Positives = 92/207 (44%), Gaps = 19/207 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKV 603 G VKR ++ + R+ G + ++DED + ++F+ +T V+ + G+ +KE V Sbjct: 618 GLVKRTSVAEFANIRQ--NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESV 675 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 R R + ++L G+++ + + V+ T+ G +R + Sbjct: 676 VR-----NMGRSATGVRGVNLRPGDQVVGASVITDQDE------VLIITEKGYGKRTRAD 724 Query: 664 DFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ R GK A D + + T + D+++ T G +R ++ I GR+ Sbjct: 725 EYPTKGRGGKGIKTANVADKNGPLAGLMTVKGDEDLMIITNTGVMIRTSVANISQ-TGRS 783 Query: 721 SVGVRGISLAKGDQVISMAIVLHADAD 747 ++GV+ + L + Q+++ V + D Sbjct: 784 TMGVKVMRLDQDAQIVTFTTVQADEKD 810 >gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 858 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/891 (40%), Positives = 554/891 (62%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM +G + Y KCA Sbjct: 7 IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPYKKCA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 67 RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K +++DDL KDTVD PN+D + EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 127 EKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDN +I+ + LM+ I+ PDFPTG I G G+K+AY TGRG +V+R + Sbjct: 187 SEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRVVMRAKAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++++I++TEIPY VNK ++E IA+LV+E ++ I++ DES RQG R+VI++K Sbjct: 247 IE-SDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T+LQS FSVN +AL +P TL +K FV R +V +RRTK+ Sbjct: 306 RDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLTLKDCIKYFVEHRHDVTIRRTKF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L G+ IA N+DEVV+II+ S P AR L QR Sbjct: 366 ELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQR--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL+++TGL +++ + + L I IL+ + Sbjct: 411 -----------FNLDELQSQAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSILTDDN 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL +K++ RRT+I+ + ED + +V+TVSHLGY+KR PLS Sbjct: 460 LCKKVMKDELNELKEKFGDERRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G GV R++DF ++ + H ++LFF+ G Y K + +P G+ ++G Sbjct: 520 FREQARGGVGSKGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKG 579 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ + + I+ +DE N+ VVFATK+G +++ L + + +G Sbjct: 580 RAIQNLLNIDPDDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPRANGV 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKG 732 IA+ + DE++ V +N+I++ K G+ VRF +R GR + GVRG+ L Sbjct: 640 IAINIAEGDEVVDVRLTNGKNEIIMANKNGRAVRFNEETVRAM-GRTATGVRGMKLDGDD 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQV+ M +V ND+ E Sbjct: 699 DQVVGMIVV-----------------------------------NDAEAEN--------- 714 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++ VSE G+GKR+S D+R++NR GKG++ ++++ + G +VA+ VND++ Sbjct: 715 -------VMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITE--KTGRVVAIKNVNDDND 765 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++++ G IR+ V+E+R+ RAT+GV + + +K V+ SV ++ SE+ Sbjct: 766 LMIINKSGITIRLAVSEVRVMGRATQGVRLINLSKKNDVIASVCKVMSSEL 816 >gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] Length = 842 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/880 (40%), Positives = 543/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C++ IDN +ID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A L++R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YVVF TK+G V++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M IC + DTE Sbjct: 695 DEDGQDEVVGM-------------IC----------IKDPDTET---------------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 716 ------------IMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153] Length = 916 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013] Length = 916 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/920 (41%), Positives = 559/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV + + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G I ++L + ++T+S +G+ KR +F R G+G++ T V + + LV Sbjct: 487 GQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELV 546 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRE 899 + + +D ++ ++KG + R+ EI R KG+ + + K DE + +V + E Sbjct: 547 S---TSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-E 602 Query: 900 SEIVDEA 906 S+ D+A Sbjct: 603 SDRSDDA 609 >gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031] gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031] gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104] Length = 822 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSI +R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 920 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/912 (41%), Positives = 554/912 (60%), Gaps = 34/912 (3%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGK- 713 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 AIR G A + IS + AD + + KH + Sbjct: 714 ------AIRFNEYWEKSGNDEAEDADIETEISDDLE-DETADNENALPSGKH-GVRPSGR 765 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 L D + I+ E + +LT + G+GKRT D+ N+ G+ Sbjct: 766 GSGGLRGMRLPADGKIVSLIT--FAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQ 823 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G A + + N G LVA V + D ++L++ G LIR V +IR RA GV + + Sbjct: 824 GNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINL 881 Query: 886 AKDERVVSVERI 897 + E +VS+ER+ Sbjct: 882 DEGETLVSLERV 893 Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 9/109 (8%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESS 642 + + KV ++ R A + +++L++GE + + + PEDES+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSLERVAKEPEDESN 902 >gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] Length = 841 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/897 (42%), Positives = 556/897 (61%), Gaps = 92/897 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE E+ I + I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G Sbjct: 2 ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K GE + +HPHG+AA+YD+L RMAQD+SLR L++G GNFGS DGD AA Sbjct: 62 DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE +L K + +L D+ KDTVDF+PN+D EPVVL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNLGE +DG AV+DNP+I +D L M+ I+GPDFPT A I+G+ GI++AY TGRG Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +++R + IE+ G+R +IVVTEIPY VNKA ++EKIA+LV++K+I I+ ++DES R+ Sbjct: 242 RLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGRE 301 Query: 307 -GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360 R+VI+LKR A+ +V+LNQLY+ T LQ FSVNMVA+ Y+P L ++ Sbjct: 302 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDY 361 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++A +E+V+ RRTK+ L+KA RAH+L GL IA+ NLDEV+RIIR S A+ +L +R Sbjct: 362 YIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSER 421 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 S+ Q++AI+++RL RLTGL R+ + +E N L Sbjct: 422 FG--------------------------FSDKQSQAIVDMRLGRLTGLEREKLESEYNEL 455 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IK D+L++ + IIK EL +K++ RRT+I +++ ED I ++ V+ Sbjct: 456 LEKIKYFRDVLANEILVHQIIKDELTVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVI 515 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KR+P Y++QRRGGKG G+ R+EDFV +LF+ STH ++FF++ G VY+ Sbjct: 516 TMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYR 575 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P QA+G A++N+L LN E++TT++P E + LY+V ATK+G V++ Sbjct: 576 LKAYEIPESGRQAKGTAIVNLLQLNGDEKVTTVIPIQEYKEG---LYLVMATKNGLVKKT 632 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L ++ I + G A+ L DE++ V+ DI+L+T G +RF + R GR Sbjct: 633 DLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPI-GRV 691 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S GV+G+ L +GD +I M +C T+ T Sbjct: 692 SQGVKGMELDEGDFIIGM------------EVC---------------TDNTT------- 717 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L V+E GFGKRT ++++ R GKG+ +++ + G Sbjct: 718 -------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGK 756 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + V+++D I+L+S GT+IR+ VNEI I RAT+GV + ++ VVSV R+ Sbjct: 757 SIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVARM 813 >gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] Length = 809 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 555/887 (62%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+ I +E++ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +G +N+ Y K A Sbjct: 2 LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+AA+YDAL RMAQD+++R L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 62 RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + L D+ K TV+FR NYD + EP VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV D +A++D+P + LD L+ I+GPDFPT A++ GR G++ AYATGRGSI +R H Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMYGRQGMRQAYATGRGSIKLRSRLH 241 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E++ RE IV+TEIP+ +NKA+++EKIA+LV E ++ I+DLRDESDR G R+VI+LK Sbjct: 242 VEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDLK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +D+++N LY+YT+L++ + +N++A+ +P+ +L IL+ F+ R+EV++RR++Y Sbjct: 302 RNTLSDIVINTLYKYTALETSYGINLLAVVNNRPQLLSLKQILELFLEHRKEVILRRSRY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ N+DEVVR+IR S P A+ LMQR Sbjct: 362 DLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ++AIL++RL RLT L RD + E ++ I+ I+ Sbjct: 407 -----------FELSEVQSQAILDMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSE 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554 L G+++ EL ++ +PRRT I+E + D ED I E++V+T++ GY+KR PLS Sbjct: 456 VLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLS 515 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q+RGGKG SG + +DFVTDL + H +L F++ G +++ KV+++P G AR Sbjct: 516 AYQQQKRGGKGVSGANVAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTAR 575 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + N+L L++ E + T++ + +++ + L FATK G V+R+ + + G I Sbjct: 576 GTHIANLLPLDKEEYVATVLCMKDFDANHSFL---FATKKGMVKRSAVHLYRNYRPHGLI 632 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+++V +E++I L T G +RF S +R GR + GV+GI+L + D Sbjct: 633 AVNLRDGDELIAVREVDEESEIFLITHHGVAIRFACSEVRSM-GRGAAGVKGIALRQEDA 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S I I+GD Sbjct: 692 VVSCVI------------------------INGDG------------------------- 702 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++Q +LTVSE+G+GKRT+ +R +R GKGI ++ ++ G ++ V++ D++I Sbjct: 703 -RDQ-LLTVSEQGYGKRTAIDYYRQQSRGGKGI--INMRLTSKTGGVLGAMMVDETDELI 758 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++ ++R+ +IRI RAT+GV + S + VV +RI E Sbjct: 759 MLTSMHKMLRIGTADIRICGRATQGVKLVSLDSEATVVCFDRIVSEE 805 >gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] Length = 863 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 548/891 (61%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM +G +K Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+DG+ +EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNPDID + LM I+ PDFPTGA I G G+K+AY TG+G +VIR + Sbjct: 192 GEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGKGRVVIRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNKA ++E IA+LV+E +I I+++ DES RQG R+V+++K Sbjct: 252 IE-SHESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDESGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P TL +K FV R +V +RRT++ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLTLKECVKYFVEHRHDVTIRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV +IR S P A+R L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL + + E L I IL Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL +VK++ RRT I + ED + +V+TVSHLGY+KR LS Sbjct: 465 LCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G R+EDF ++ + H ++LFF+ G Y K + +P G+ ++G Sbjct: 525 FKEQARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ + + + +DE+ N+ YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNMLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKAYSRPRANGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + DE+++V N+++L + G+ VRF A+R GR S GVRG+ L G Sbjct: 645 NAINIVDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTM-GRVSTGVRGMRLDGGD 703 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ M +V AD Sbjct: 704 DEVVGMVVVNEAD----------------------------------------------- 716 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++ ++ VSE G+GKR+S D+R +NR GKG++ ++ ++ G LV++ V D + Sbjct: 717 ----KESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVSIKNVTDEND 770 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902 +++++ G IR+ V+ +R+ RAT+GV +I T K++ + SV ++ SE+ Sbjct: 771 LMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCKVMSSEL 821 >gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1057] Length = 826 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821 >gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/887 (42%), Positives = 548/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P P+ DES +VF T++G ++R L++F I Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + E I++ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I V+ AD IS E Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301] Length = 822 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026] Length = 829 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/889 (41%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ DS V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806 >gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] Length = 853 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/909 (41%), Positives = 555/909 (61%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID N + ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+P+ VNKA ++EKIAELVR+K++ I DL D+S R+G R+ Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ +EEVV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R Sbjct: 369 RRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ +AI+++RL LTGL R+ + E L +I+E I Sbjct: 419 ----------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+I++E+L + ++ RRT I D+ ED I RE++V+TV+++GY+KR Sbjct: 463 LADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVTNMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ +EDF+ +LF+ ++H ++FF++ G VY+ K + +P Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT +P E E Y+ ATK G V++ + D++ + + Sbjct: 583 RTARGTAVINLLQLMPDEKITATIPIKEYEDGK---YLFMATKKGLVKKTPIQDYMNVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D ++ V+ DILL TK GQC+RF +R GR S+GVRG++L+ Sbjct: 640 TGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D++I M MS+Q + Sbjct: 699 DNDEIIGM------------------QMSSQGK--------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRTS +F NR GKG++ +++ + G +V + V++ Sbjct: 714 --------DMLIVSEKGMGKRTSMEEFTKQNRGGKGVKCYKITE--KTGNVVGMKAVDEE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---------ESE 901 +I++++ +G +IR+ ++I R T GV + + + E+V SV ++R E E Sbjct: 764 SEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVAKVRTASAEIDGEEVE 823 Query: 902 IVDEAESTE 910 I +E +S E Sbjct: 824 IKEEDDSPE 832 >gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868] gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868] gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Riemerella anatipestifer RA-GD] Length = 841 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/905 (40%), Positives = 551/905 (60%), Gaps = 86/905 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV NKK Sbjct: 3 KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA RY Sbjct: 63 YLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K + +L DL K+TVDF+ N+D S QEP VL + PN+LVNG GIAVGMATN+ Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E VD A IDN +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+ Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R E+ G+R I+VTEIPY VNKA M+ + +ELV+E +I I ++RDESDR+G RV Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V ELK A +V+LN LY+YT+LQ+ FSVN +AL +P++ L I+ FV R E+V+ Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 RRT+Y L KAR+RAH+L G +A LD+ + IIR S P+ A+ L+ Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLI--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS++Q +AIL+LRLARLTG+ D IR+E ++ I + Sbjct: 413 -----------------AEFELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL++ +R IIK ELL VK++ RRT I +M ED I E++V+T+SH GY Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G Y +V+ +P Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665 GS A+G+A+ N++++ ++I + + D +YVV TK+G +++ L + Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G A+++ D++L ++I++ TK G+C+RFP R GR S+GVR Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA-VGRTSIGVR 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GISL D+VI M +V ND Sbjct: 695 GISLEDNDEVIGMIVV-----------------------------------ND------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++ + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D + +++++ G IR+ V+ +R+ R T+GV + + ++ + +V ++ + V++ Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821 Query: 906 AESTE 910 E E Sbjct: 822 EEIEE 826 >gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] Length = 822 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/881 (41%), Positives = 555/881 (62%), Gaps = 94/881 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + ++K Y K ARI G+ Sbjct: 19 IVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKPYRKSARIVGD 78 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 MGKYHPHG+++IYDA+ R+AQD+S R L++G GNFGS+DGD AA RYTE ++ K Sbjct: 79 TMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRYTEAKMTKMTG 138 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ K+TVD+ PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL EVVD Sbjct: 139 EMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATNIPPHNLREVVD 198 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +A+I+NP+I+++ L++ ++GPDFPTG +I+G+TGI NAY TGRG I +R +HIE+ S Sbjct: 199 AIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNAYTTGRGRIKLRSKTHIEEIS 258 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R++IVVTEIPY VNKA M+EKIA+LVR+K++V I+D+RDESDR G RV I+L++ +A Sbjct: 259 KKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIRVAIDLRKDVNA 318 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +ILNQLY+YT LQ FSV +AL +P+ L IL ++ +++++VRRT+Y L KA Sbjct: 319 SIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVHYLNHQKDIIVRRTEYDLKKA 378 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 + RAH++ GL IA+ N+DE+++IIR S N A +LM+R Sbjct: 379 KARAHIVEGLLIALDNIDEIIKIIRASYN--DAEEKLMER-------------------- 416 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LSEVQ +AI+++RL RL GL R+ + NE L I+ +L+S ++ I Sbjct: 417 ------FDLSEVQAKAIVDMRLRRLQGLEREKLENEYAELLKTIEYLESVLASDELVMSI 470 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+EL +KD+ RRT D + ED I ED+VVT++H+GYVKR+P S Y+ Q+ Sbjct: 471 IKEELSEIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQK 530 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG + + R+ DFV LF +TH ++FF++ G VY+ K + +P S A+G A++N Sbjct: 531 RGGKGVTALSTRENDFVKHLFFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVN 590 Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +L+L+ GE+IT ++P F +DE Y+V AT++G ++ L+++ ++G +A+ Sbjct: 591 LLALDPGEKITAVIPIKEFKDDE------YLVMATRNGVFKKTSLTEYDSSRKNGIVAIN 644 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE++ V +I+L T G ++F + +R GR S GV+GISL Sbjct: 645 LAEDDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAI-GRVSKGVKGISLK------- 696 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 D DY LI D + D++ Sbjct: 697 -------DDDY---------------LIGMD------IATDNA----------------- 711 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856 ++L+V+EKG+GK T + + R+GKG+ ++K + GAL + + + D I+++ Sbjct: 712 -YVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTK--KTGALSGMCVIEKEKDDIMVI 768 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 S GT+IR+ + I R+T GV + + +D + ++ ++ Sbjct: 769 SIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKV 809 >gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] Length = 835 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/916 (41%), Positives = 554/916 (60%), Gaps = 99/916 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M EHI + V + M++SY+ YA++VI RA+PD+RDGLKPV RRILF M Sbjct: 1 MDEHIFDK-------VHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G +K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R L++G GNFGS+ Sbjct: 54 SELGNGPDKPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSI 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K + +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG Sbjct: 114 DGDGAAAMRYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235 GIAVGMATNIP HNL EV+ + +IDN D +D LMEI++GPDFPTGA ILG++ Sbjct: 174 GIAVGMATNIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATILGKS 233 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GI+ AY TGRG I +R VS I + +I++TE+PY VNKA +++KIAELV++K+I Sbjct: 234 GIEEAYRTGRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDG 293 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I + D+S+ QG RV IEL+R +A+VILNQLY++T LQ F VNM+AL +P+ L Sbjct: 294 ITGIIDQSNMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNEPKVLNLH 353 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L ++ +EEVV RRTKY LNKA++RAH+L GL IA+ N+DEV+ IIR S + A++ Sbjct: 354 QMLTYYLEHQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQ 413 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 +L++R LS+ Q++AI+++RL LTGL R+ I Sbjct: 414 KLIERFG--------------------------LSDAQSQAIVDMRLRTLTGLEREKIEA 447 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E N L I E IL+ +LL +I++EL + D+ RRT I D+ ED I Sbjct: 448 EYNELMKRIDELKAILADNKKLLMVIREELSIIMDKYGDDRRTAIGYDEFDISMEDMIPN 507 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E V+T+++LGY+KR+ +R+Q RGG+G G+ D+D++ D+ + +TH VLFF++ Sbjct: 508 ESTVITMTNLGYIKRMTPDNFRSQNRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNK 567 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VYK K + +P ARG A++N+L+L GE+I+ I+P + +N Y+ ATK G Sbjct: 568 GRVYKLKAYEIPEAGRTARGTAIVNLLTLQAGEKISAIVPV---DGIKDNEYLFMATKQG 624 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ ++ I ++G A+ L DE++ V+ +I L TK G C+RF + +R Sbjct: 625 IVKKTYCKEYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRP 684 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR+++GV G+++ +GD+V+ M ++ Q GDT Sbjct: 685 -TGRSAMGVIGMNILEGDEVVGM------------------QLNTQ-----GDT------ 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L VSE G GKRT +F + NR GKG++ KI Sbjct: 715 ------------------------LLIVSENGLGKRTPIEEFNLQNRGGKGVKC---YKI 747 Query: 836 NE-IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 NE G ++ V V++ +I+L++ +G +IR+ V I R T GV + + +V V Sbjct: 748 NEKSGNVIGVKAVSNTREIMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKV 807 Query: 895 ERIRESEIVDEAESTE 910 ++RE ++ DE ES E Sbjct: 808 AKVREEDVSDETESEE 823 >gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228] Length = 864 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/898 (41%), Positives = 554/898 (61%), Gaps = 92/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ + +G+ K + K A Sbjct: 8 VKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YD + RMAQD+S R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ K+TVDF PN+D S +EP VL AR+PN+LVNG GIAVGM+T+IP HNL Sbjct: 128 SPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +I+ P+I+ LM I+GPDFPTG I+GR I AY GRG + +R + Sbjct: 188 GEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLTVRAKTR 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E S R+QI+V E+PYQVNKA +++KIA+LV+ +++ I+D+RDESDR G R+VIELK Sbjct: 248 VEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LNQLY+++ LQ FSV M+AL +P+ +L IL+ ++ ++EVV RRT+Y Sbjct: 308 REATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVVRRRTQY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA DRAH+L G IA+AN+DE+V +I+ + +TAR LM+ Sbjct: 368 DLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLME---------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q AIL +RL LTGL RD I +E L +I IL+S Sbjct: 412 ----------NYKLSETQANAILRMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LL IIK+E+L++K + + RRT I+ D+E ED I E +VVT+++ GY+KR+PL + Sbjct: 462 KLLEIIKEEILAIKAKYNDERRTSIMNRATDLELEDLIEEEQIVVTMTNQGYIKRMPLDL 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG G+ ++EDFV ++F +TH LFF++ G VY+ K +++P QARG Sbjct: 522 YRSQRRGGKGVIGISTKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARG 581 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+IN+L L +GE+I ++P FP D Y++ ATK+G +++ L ++ N +G Sbjct: 582 TAIINLLELEEGEKINAVIPIKEFPAD------AYLIMATKNGLIKKTALEEY-NTNYTG 634 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V + +I L T+ + + F + +R GRNS GV+GI+L Sbjct: 635 LIAINLRENDELIGVRVIEAKENIFLVTRNAKAIHFSEADVRS-VGRNSYGVKGINLETE 693 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI + I D+ DE + ++ +R LIS Sbjct: 694 DEVIDLGI----DSAGDELLVITENGYGKRTLIS-------------------------- 723 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++R+ NR GKGI ++++ N G L A V+D+ + Sbjct: 724 -----------------------EYRVQNRGGKGILTANLTEKN--GQLAAARIVDDSLE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++ ++ G +IRV +EI R T GV I + ++++VVS+ RI + + D+ ++ E Sbjct: 759 MMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNKE 816 >gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] Length = 831 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/882 (43%), Positives = 533/882 (60%), Gaps = 93/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74 I V I D ++ SYL Y+++VI+GRA+P+ RDGLKPVHRRIL+ M +G+ N KY KC Sbjct: 10 IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+I GEVMG YHPHG+ AIYDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE + Sbjct: 70 AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K +L D+ KDTVDF PNYDGS +EP +L R+PN+LVNG GIAVGMAT+IP H Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD + I+NP +++ ++ +I GPDFPTG +I GR GI AY TGRG I IR Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGIIHGRQGIIEAYKTGRGRIKIRAKV 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+EKT ++ IVV EIPYQVNKA + E+I L ++K + IA++RDESD+ G R+VIEL Sbjct: 250 HVEKTK-TKDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIEL 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A ++++LN LY+ +++++ F + ++A+ G +P+ FTL+ +L F++ R+ +V+RR Sbjct: 309 KREAMSEIVLNHLYKSSAMETTFGIILLAIEGREPKIFTLLELLDIFISHRKTIVIRRII 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR R H+L G IA+ N+DE+V +IR S NPE A+ ELM R Sbjct: 369 FELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSR-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q++AILE+RL RLTGL RD I NE L I E IL S Sbjct: 415 ------------FSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ G+IK+ELL V+ + +PRRT I E ++ ED I E +VVT+SH GYVKRV L Sbjct: 463 DKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLK 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGGKG+ D+DF+ F+ +TH +++F ++ G +Y KV+R+P A Sbjct: 523 TYEKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAI 582 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 GKA++N++ L GE+I T + F ED+S +VF TK+G V+R LS++ I + Sbjct: 583 GKAVVNLIGLQDGEKIMTTITTSDFNEDKS------LVFFTKNGIVKRTNLSEYKNIRNN 636 Query: 672 GKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DE++S + ++ + TK GQC+RF +IR GR + GV GI Sbjct: 637 GVRAINLDEDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDI-GRVARGVIGIKFK 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + + A + D D Sbjct: 696 VANDSVIAATTIKGDEDK------------------------------------------ 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849 +L++SE G GK+T + + NR GKG+ A ++ N+ G LV+V VND Sbjct: 714 ---------LLSISELGIGKQTLAGSYSTINRGGKGVIAMKLT--NKTGKLVSVLSVNDS 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 N +++++ G +IRVP+ IR A R T GV I S ++V Sbjct: 763 NMDLMVLTTSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKV 804 >gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] Length = 872 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/890 (42%), Positives = 543/890 (61%), Gaps = 83/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 AKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNPDI+L+ LM+ I+ PDFPTG I G G+K+AY TGRG I++R + Sbjct: 192 REVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRIILRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE ++IVVTEIPY VNK ++E IA LV+E ++ IA+ DES RQG R+VI++K Sbjct: 252 IESDES-HDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGRQGMRIVIDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTK+ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIRRTKF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 371 ELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL + + E + L I +ILS Sbjct: 416 -----------FDLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT+I+ + ED + +V+TVSHLGY+KR PLS Sbjct: 465 LCKKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGG G G R+ DF ++ + H ++LFF+ G Y K + +P G+ ++G Sbjct: 525 FREQARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + I I+ +DE N+ YVVFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ + DE++ V EN++++ + G+ VRF IRV GR + GVRG+ L GD Sbjct: 645 IAINIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVM-GRTATGVRGMRLDDGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV V+ I+E Sbjct: 704 DAVIGMIV---------------------------------------VDDPINET----- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE G+GKR+S D+R +NR GKG++ ++ ++ G LVA+ V D++ + Sbjct: 720 ------VMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902 ++++ G IR+ V E R+ RAT+GV +I + K++ + SV R SE+ Sbjct: 772 MIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSEL 821 >gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] Length = 865 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/905 (41%), Positives = 547/905 (60%), Gaps = 58/905 (6%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 S D + I ++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M MG+ Sbjct: 14 SGDGGNPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLL 73 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+K+VKCA++ GEV+GKYHPHG++A+YDA+ RMAQD+SLR L++GQGNFGSVDGDPPA Sbjct: 74 HNRKHVKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPA 133 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ A LL D+ KDTVDF N+D + EP++L + PN+L+NG GIAVGM Sbjct: 134 AYRYTEARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGM 193 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E+VD C+ +++NP LD +++ ++GPDFPTG I G+ GIKNAY GRG Sbjct: 194 ATNIPPHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHGKGGIKNAYQNGRG 253 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 ++R +E +++ IVVTEIPYQVNK+ +++KIA+LV +K I +I+D+RDESDR Sbjct: 254 RFMMRAKVAVEHLP-NKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRD 312 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIELKR A +++LNQLY++T +Q FS+ +A+ +P+ L+ L F+ R Sbjct: 313 GMRIVIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMGLVQALNHFIDHRI 372 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRT YLL KA+DR H+L G +A+ +LD V+ IIR S N AR L+ + Sbjct: 373 DVVRRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVA-YFTGKK 431 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 I I+ + D S Q AILEL+L RLT L D+I +EL + I E Sbjct: 432 IT-----INTTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +L +I +EL ++ + RRT I + ++ ED I E + VTVSH G Sbjct: 487 YESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLIADEQVAVTVSHSG 546 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR P+S YR QRRGG GR G+ RDEDFV +F+ STH +L F++ G VY KV+ + Sbjct: 547 YLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEV 606 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664 P + +GK + N+++L GE + I+P E+ES YV F T+ G V++ L D Sbjct: 607 PEIAAAGKGKHIGNLVALQPGESVRAILPVKSLEEESR----YVFFTTRKGTVKKTALVD 662 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G IA+ +D DE+++ + + L + G +RF + +R+ GR + GV Sbjct: 663 FSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADVRIM-GRPAYGV 721 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ + D ++ MAI +E KN + N Sbjct: 722 RGMDIGAKDYIVGMAIT---------------------------PKERKKGKNGGADTAN 754 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + IL+V+E G+GKRT ++R+ R GKG+ ++ N G +VA+ Sbjct: 755 L--------------ILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERN--GKVVAI 798 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V ++ + +++S G +IR + IR A R+T+GV + ++V + I + E Sbjct: 799 MLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDEKA- 857 Query: 905 EAEST 909 EAE T Sbjct: 858 EAEPT 862 >gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + +IL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLANIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae BRL-230010] Length = 790 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/871 (42%), Positives = 539/871 (61%), Gaps = 86/871 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + V I EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 3 EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD AA R Sbjct: 63 PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ K+T+D+ PNYDG QEPVVL AR+PN++VNG GIAVGMATN Sbjct: 123 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG + +I+NPD+ LM I+GPDFPTGA ILGR GI+ AY+TGRGS+ Sbjct: 183 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G R Sbjct: 243 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R + +V+LN L+++T+LQS F + +AL +P+ L +L ++ + V+ Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR LM++ Sbjct: 362 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q +AIL++RL RLTGL R+ I NE L +I E Sbjct: 413 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ +L II +EL ++ RRT I G +EDED I RE++V+T++H GYVK Sbjct: 456 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+S YR+QRRGG+G G+ ++ DFV LF+ ++H ++FF+ G VY+ K + +P Sbjct: 516 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 575 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG +IN++ + QGE + ++P ES ++ FAT+ G V++ L D+ I Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIPIESFESGH---FLFFATQQGIVKKTPLKDYNNIR 632 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA+ L D ++ V+ +I++ T+ G + FP +R GR + GV+GI Sbjct: 633 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGI-- 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 H+S ++D+ ++ +I +E Sbjct: 690 ---------------------------HIS----------------EDDAVIDMDIVDE- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L V+ KGFGKRT ++RI R GKGI+ +V+ N G +V + V + Sbjct: 706 -------NNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVVGLKVVEE 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 ++ +++++ GT+IR ++ I I R T+GV Sbjct: 757 DEDLMIITASGTVIRTSMSGISIMGRNTQGV 787 >gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424] gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424] Length = 815 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/886 (42%), Positives = 551/886 (62%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ ++G+ +K Sbjct: 2 EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + GEVM KYHPHG+ A Y + R+AQD++ R +++GQGNFGS+DGD AA R Sbjct: 62 PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVD + NYDG+ QEP VL AR PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGEV+DG VA+ DN +I + LM I+GPDFPTGA +LGR+GI AY TGRGSI+ Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLLGRSGIVKAYTTGRGSII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + IE+ +E+IV+TEIPYQVNKA ++EKIAEL R+K+I + DLRDES+ +G R Sbjct: 242 MRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIEL+R +++VILN LY+ T LQS F VNM+AL P+ L L ++ ++EVV Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEALYHYLEHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S E A+ LM++ Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQ--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L++VQ +AIL++RL RLTGL RD I E L I + D Sbjct: 413 -----------------FSLTDVQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLED 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ I+K+ELL +KD+ RR+ I+EG +D +++ED I +E +++T+SH Y+ Sbjct: 456 ILAKPERVIEIVKEELLEIKDKYGDKRRSVIIEGQIDQIDNEDLIEKEQIIITLSHNQYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S Y++Q RGG+G +G+ DED + + STH +LFF+ G VY K + + Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G +IN+L + + E++ +I+ + + +L +F+TK G ++++KL D+ I Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDLQEEDTSL--IFSTKFGIIKKSKLGDYASI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + GKIA+KLD D ++ V+ T + DI++ T GQ +R +R GR S GV+GI+ Sbjct: 634 LKKGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQM-GRVSRGVKGIT 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D V+ M +V D ++I Sbjct: 693 LSPDDYVVGMEVV-----DESKKIL----------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 TV+E G GK + S +F + NR GKG++ V+K + G +VAV + Sbjct: 713 -------------TVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ +++++D+G +IR+ ++ I R GV + + D++V +V Sbjct: 758 GNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATV 803 >gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae] Length = 822 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 554/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGM TNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + RRT ++ G + +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVWSLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++ DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASVI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +V++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR V I R+T GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAE 808 Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 5/109 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 G + R+ EI R KG+ + + K + S++ I ESE D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTIINVESERSDDA 609 >gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] Length = 916 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013] Length = 916 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54] gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54] Length = 822 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHXAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVT PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/900 (41%), Positives = 560/900 (62%), Gaps = 91/900 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+++ + Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV S D E Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR + I R+T GV + ++ ++++ +VD A+ E Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTF------ALVDAADQKE 811 >gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084] gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084] Length = 929 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/877 (42%), Positives = 544/877 (62%), Gaps = 91/877 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ NK + K A GEV+G Sbjct: 91 EMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIG 150 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++A+YDA+ R+AQ +S+R L++G GNFG++DGD AA RYTE RL + A LL Sbjct: 151 KYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMELL 210 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDT+D++ NYD S QEPVVL AR+PN+LVNG GIAVGMATNIP HNL E + Sbjct: 211 RDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVC 270 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +IDNPD +D LM ++ GPDFPTGAVI+G GI+ AY TGRG I IR +H+E T R Sbjct: 271 MLIDNPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVESTKTGR 330 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TE PY VNK + EKIA+LV EKR+ I+D+RDES+R+G R+VIELK+GA +V+ Sbjct: 331 NKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEVV 390 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+Y++LQS F + +AL P TL +L+ ++ + +VV RRT++ L KAR R Sbjct: 391 LNNLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARAR 450 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L GL +A+ ++DEV+ IIR S A L++R Sbjct: 451 AHILEGLLLALDHIDEVISIIRSSRTDTQASERLIER----------------------- 487 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 ++ QT AILE+RL RLTGL RD I+ EL+ L I+ D+L+ ++L +IK Sbjct: 488 ---FGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVIKS 544 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + ++ RRT I + + ++ ED I EDMVVTV+H GYVKR+P++ YR+Q+RGG Sbjct: 545 EMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGG 604 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG G+ ++D DFV DLF+ STH V+FF++ G VY+ KV LPIGS ARG AL+N+L Sbjct: 605 KGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLP 664 Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 L +GE T ++ FP DE Y++FAT +G V++ +SD+ + R G IA+ L Sbjct: 665 LGEGEHPTAVITTREFPADE------YLMFATANGMVKKTAMSDYDKSRRDGIIAINLKR 718 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 DE+++V ++L +++G+ + F S +R GR++ GVRGI+L +++ M Sbjct: 719 DDELVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TGRDTSGVRGITLKDDVKMLGM-- 775 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 EIT+ D + Sbjct: 776 ------------------------------EITNGNGD---------------------L 784 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 L ++E+G+GKRT +++ R G+G+ AT ++ ++ G LVA V ++++VS++G Sbjct: 785 LVMTERGYGKRTPVFEYPEHKRGGQGV-AT-IAMTSKKGNLVACRVVGPQHELMIVSEEG 842 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +IRV +I RAT+GV I + ++++V +V R+ Sbjct: 843 VVIRVKTADISKLGRATQGVKIMNMGENDKVSAVARM 879 >gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36] gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36] Length = 826 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPAVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R GR + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSM-GRIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] Length = 842 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ALM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTS-THDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/883 (41%), Positives = 554/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+++ + Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTAEH--YLFFATRQGIVKRANVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV S D E Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++D G +IR + I R+T GV + ++ ++++ Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMT 800 Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR + +F+ R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G + R+ EI R KG+ + + K E S++ I Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTI 598 >gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102] gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102] Length = 871 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/891 (41%), Positives = 547/891 (61%), Gaps = 53/891 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFKKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R L+ G GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++D VAVI NP+I LM+ + GPDFPTGA ILG + I+ AY TGRGSI +RGV+ Sbjct: 188 LGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +IE + DRE I++TE+PYQ NKAA++EKIAE+V EKR+ IAD+RDESDR G RV Sbjct: 248 NIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRDGMRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ TL L F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRIESIA 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA++ LD ++ +IR +P+ TA+ EL+ Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELIT----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LSEVQ AIL+++L RLT L D IR E + L +I + DI Sbjct: 417 ---------------TYGLSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+L II+ E+ +K TPRRT I+ G +++D D I E ++ V+ GY+KR Sbjct: 462 LARRERVLEIIETEVAQLKTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + AQ R +G++ ++D+D + H S+LFFS G VY + +++P S Sbjct: 522 MPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG ++ +L + + E+IT+I+P E S Y+V TK GN+++ +L+ F I Sbjct: 582 RTSRGTPIVQMLPIPKEEKITSIVPVDEFSSEE---YLVMLTKGGNIKKTELAAFSHIRA 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D++ V E+ +++ ++ G + F + ++ R + GV+ + L Sbjct: 639 NGLIAISLEEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+++ M I+ A + + + +TE+I +++ + + I+E Sbjct: 699 KNKDELVGMDILPAAILETLDIVT------------EAETEDIEAIETIETEDIEITETT 746 Query: 790 CQELKLKE-----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + ++ ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 747 EESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATL 806 Query: 845 FPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V ND+D+I++V+++G +IR VN I I SR+ GV + +D+ + V Sbjct: 807 RIVNNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGV 857 >gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana) tropicalis] Length = 813 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/872 (42%), Positives = 527/872 (60%), Gaps = 90/872 (10%) Query: 46 RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105 RDGLKPVHRR+L+ M ++ +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S Sbjct: 10 RDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFS 69 Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165 LR +L++GQGNFGSVDGD AA RYTE RL K AH +L D+ K+TVDF PNYDGS QEP+ Sbjct: 70 LRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEPL 129 Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225 VL R PN+LVNG GIAVGMATNIP HNL EVVD C+ ++ +P+ +DALMEII PDF Sbjct: 130 VLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPDF 189 Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKI 284 PT +I G G+K+ Y TGRG +V+R H E G R+ I+V E+PYQVNK + E++ Sbjct: 190 PTAGIIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERM 249 Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 AELV EK++ I+ ++DESD+ G R+VIELKRG +V+LN LY+ T LQ F +NMVAL Sbjct: 250 AELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVAL 309 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 +P L ++ F+ R EVV RRT + L KARDR HVL GLA+A+AN+DE +RII Sbjct: 310 VDGQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIRII 369 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLA 463 R SP P A+ ELM ++Y LS+ Q + IL++RL Sbjct: 370 RESPTPPVAKAELM---------------------------SLYRLSDTQAQEILQMRLQ 402 Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTR 519 RLTGL +D I E + I++ LDIL+ R+ II +EL +V++E RR+ Sbjct: 403 RLTGLEQDKIVAEYKEVMAHIEDLLDILAKPERVSTIIGEELTAVREEFGQTKLGARRSE 462 Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579 I D+ ED I DMVVT+SH GY+K PLS YRAQ+RGG+G+ +++D++ Sbjct: 463 IEHSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQ 522 Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639 LFI +TH +L FS+ G +Y KVW +P GS +RG+ ++N+ L +GE+I ++P D Sbjct: 523 LFIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGD 582 Query: 640 ESSW-NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698 S+ + YV AT G V++ L +F ++G IA+ LD D ++ ++D++L Sbjct: 583 MRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVML 642 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 + G+ VRF + +R GR + GVRG++L VI+M Sbjct: 643 FSDGGKAVRFDENDVRPL-GRQARGVRGMTLEDSQSVIAM-------------------- 681 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818 L++ D + Q +LT +E G+GKRTS ++ Sbjct: 682 -----LVAED---------------------------ESQSVLTATENGYGKRTSIVEYT 709 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 R KG+ A S+ N G +VA V+ +D+I+L++D G L+R V EIR RAT+ Sbjct: 710 RHGRGTKGMIAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGRATQ 767 Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 GV + + + + ++RI E++ +E ++T+ Sbjct: 768 GVTLIALDEGATLSGLQRIVEND-ANENDATD 798 >gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM] Length = 841 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/905 (40%), Positives = 550/905 (60%), Gaps = 86/905 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV NKK Sbjct: 3 KEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA RY Sbjct: 63 YLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K + +L DL K+TVDF+ N+D S QEP VL + PN+LVNG GIAVGMATN+ Sbjct: 123 TEARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E VD A IDN +I++D LM+ I PDFPTG +I G G+++A+ TGRG IV+ Sbjct: 183 APHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R E+ G+R I+VTEIPY VNKA M+ + +ELV+E +I I ++RDESDR+G RV Sbjct: 243 RAKVAFEEI-GNRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V ELK A +V+LN LY+YT+LQ+ FSVN +AL +P++ L I+ FV R E+V+ Sbjct: 302 VYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVI 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 RRT+Y L KAR+RAH+L G +A LD+ + IIR S P+ A+ L+ Sbjct: 362 RRTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLI--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS++Q +AIL+LRLARLTG+ D IR+E ++ I + Sbjct: 413 -----------------AEFELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL++ +R IIK ELL VK++ RRT I +M ED I E++V+T+SH GY Sbjct: 456 EDILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G Y +V+ +P Sbjct: 516 IKRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDF 665 GS A+G+A+ N++++ ++I + + D +YVV TK+G +++ L + Sbjct: 576 EGSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAY 635 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +G A+++ D++L ++I++ TK G+C+RFP R GR S+GVR Sbjct: 636 SRPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARA-VGRTSIGVR 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GISL D+VI M +V ND Sbjct: 695 GISLEDNDEVIGMIVV-----------------------------------ND------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++ + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 713 ---------MENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQ 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V D + +++++ G IR+ V+ +R+ R T+GV + + ++ + +V ++ + V++ Sbjct: 762 SVVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVED 821 Query: 906 AESTE 910 E E Sbjct: 822 EEIEE 826 >gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] Length = 848 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/903 (40%), Positives = 553/903 (61%), Gaps = 89/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGNFGSVDGD AA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D CVA IDN +ID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 AKAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L +++ F+ R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIRYFIEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELVEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YVVF TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M IC + DTE I Sbjct: 695 DEDGQDEVVGM-------------IC----------IKDPDTETI--------------- 716 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 717 -------------MVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903 D + +++++ G IR+ V ++RI RAT+GV + + K DE V V E EI+ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEDEIL 821 Query: 904 DEA 906 +E Sbjct: 822 EEG 824 >gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L E Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3] Length = 878 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + +K Y KCA Sbjct: 15 LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDGDPPAA RYTE R+ Sbjct: 75 YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GIAVGMATNIP HNL Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + Sbjct: 195 NEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDESD+ G R+V ELK Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++AF+++++ RRT + Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R + D+ L+ Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432 Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +Y + + + LSE Q AI+++RL +LTGL RD + +EL + +I + LDILSS Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ IIK+E+ ++K++ RRT I + G +D+ ED I E+ V+T +++GY+KR P Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPISGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG ++N+L L++GERI +M + N Y + TK+G ++R L DF + ++G Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DEI + ++ I++ T LG + F IR GR + GVR I L + Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ A V D R+++ Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 V++KG+G+ ++ D+R+ NR G G++ + ++ G + + + +D Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQTDDD 792 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E D Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844 >gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5] gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5] Length = 821 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/882 (42%), Positives = 541/882 (61%), Gaps = 88/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EM+++Y+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++GV +NK Y K A Sbjct: 11 IQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAYNKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+YD + RM QD+SLR LI+GQGNFGSVDGD AA RYTE RL Sbjct: 71 RIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRL 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ + LL DL K+TV+F+ NYD + QEP +L AR PN+L+NG GIAVGMATNIP HNL Sbjct: 131 KRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMATNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDG + ++D P+ D+ +M++I+GPDFPT I G+ GI +AY TGRG I +R + Sbjct: 191 GEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDAYRTGRGRIRMRARAQ 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + RE I+VTEIPYQVNK+ +LEKI ELV+EKRI IADLRDESDR+G R+V+E+K Sbjct: 251 IETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDREGMRIVVEIK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A+ ILN+LY++T ++ F V +AL P L IL+ F+ R E+V+ R K+ Sbjct: 311 RGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEYFIEHRREIVIARIKF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L A +AH+L GL +A+ NLDEV+ IR S + A+ +L+ R Sbjct: 371 ELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIAR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S+ Q +AIL++RL RLTGL + I + + I + DIL++ S Sbjct: 416 -----------FQFSDEQAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDS 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ II+ EL ++++ PRRT I++ +++ ED I E V+T+++ GYVKR P Sbjct: 465 RVIDIIRTELHEIREKYADPRRTIIIDDHEEIDLEDLIADEPTVITLTNDGYVKRTPADT 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++Q RGGKG+ G+ +++ DFVTD+F+ STH ++ F+ G VY K + +P +RG Sbjct: 525 YKSQHRGGKGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRG 584 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N + L + E+I+T+ P F ED+ +++F TK+G ++ LS++ I + G Sbjct: 585 KAIVNFVDLEKDEKISTVFPVREFSEDK------FLLFITKNGIAKKTPLSEYANIRKKG 638 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE++ V N +++TT+ G + F +R GR S GV+GI+L Sbjct: 639 VNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRA-VGRVSRGVKGITLVNN 697 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+S A + D D Sbjct: 698 DYVVS-AETISKDID--------------------------------------------- 711 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +ILTV++ G+GKRT + ++R+ +R GKG + N G +V V D D+ Sbjct: 712 ----PSYILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN--GLVVRGLQVVDGDE 765 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I+L+S +G +IR+ IRI R T+GV + ++D+R++SV Sbjct: 766 ILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISV 807 >gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis] gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis] gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis] gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis] Length = 916 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/920 (41%), Positives = 557/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150] gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150] Length = 823 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/900 (42%), Positives = 556/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V +T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G+TGI AY TG+GSIV+R Sbjct: 182 PHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKTGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPGRVIAIIKEELDESKRKFGDARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF + IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A I+ D E Sbjct: 694 DGDQVVGAA------------------------AITDDQE-------------------- 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +SEKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ N Sbjct: 710 ---------VLIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GHLAGIATVSGN 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+V E+ + Sbjct: 759 EDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSARIVTFALVEPEEVVKAPEADQ 818 >gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis] Length = 916 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] Length = 861 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/886 (41%), Positives = 540/886 (60%), Gaps = 55/886 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++I +EM+ SYL Y+++VI+GRA+PD+RDG KPVHRRIL+ M +MG++ NKKY KCA Sbjct: 3 LVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKCA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 ++ G+ MG YHPHG++AIYD L R+AQ +SLR +I+GQGNFGSVDGDPPAA RYTECR+ Sbjct: 63 KVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECRM 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ +TVDF PNYD S EP VL + PN++VNG GIAVGMATNIP HNL Sbjct: 123 MRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ + +++NP L +++ ++GPDFPTG I GR+GI NAY TGRG ++R + Sbjct: 183 TEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIYGRSGIANAYRTGRGRFLMRAKAS 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R I+VTEIPYQVNKA ++E++A+LV +K I +I+D+RDESDR G R+VIELK Sbjct: 243 IEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA A ++LNQLY++T +Q FS+ +A+ +P L ++ F+ R +VV RRT Y Sbjct: 303 RGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRELPLPDAIRHFIDHRVDVVRRRTAY 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDIKDLI 431 LL KAR+R H+L+G IA+ +LD V++IIR S + AR L Q R+ D Sbjct: 363 LLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEALAG 422 Query: 432 DLIDDSSYTIGS----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 +D Y I + T+ LS Q AILEL+L RLT L D++ EL + I E Sbjct: 423 VKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERIAEY 482 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+S +L +I +EL V+ RRT+IV+ +++ ED I E + VTVSH GY Sbjct: 483 ESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSHSGY 542 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR P+S YR Q+RGG GR G+ R+EDFV L + STH +L F++ G VY K++ +P Sbjct: 543 LKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIYEIP 602 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +GK++ ++L+L GE++ IM + + ++ FAT++G V++ L DF Sbjct: 603 DVGAAGKGKSIASLLNLQPGEQVRAIMAV--RDLTEEGKFIFFATRNGTVKKTPLKDFSN 660 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G IA+ +D DE++ + L T G +RF + +R GR + GVRGI Sbjct: 661 VMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSM-GRPARGVRGI 719 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K D V+ MA + + R + D + L Sbjct: 720 DLGKKDHVVGMA------------------ATPKDRGVGDDGKACACL------------ 749 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL+V++ G+GKRT ++R+ R GKG+ +V + G +V++ V Sbjct: 750 ------------ILSVTQNGYGKRTDVDEYRLQTRGGKGV--INVKTTAKNGKVVSIQLV 795 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +D +++++S G +IR+ +R A R+T+GV + + +++V + Sbjct: 796 DDTSELMVISQYGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAA 841 >gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] Length = 811 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/885 (42%), Positives = 546/885 (61%), Gaps = 91/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++ DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRI++ M +G+ +K + KCA Sbjct: 6 VVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ KYHPHG+ A+YDAL RMAQ +S+R L++G GNFGSVDGD AA RYTE R+ Sbjct: 66 HIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEARM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF PNYD S +EP VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 TKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG + ++DNP+ D LM+ ++GPDFPT I+G GI +AY TGRGSI IR + Sbjct: 186 AEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQAE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ SG + +IVV EIPYQVNKA ++EKIAELVR+K+I I+DLRDESDR+G R+VIELK Sbjct: 246 IEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ++LNQLY++T +Q F V M+AL +P L +L ++ ++++++RRT + Sbjct: 306 RDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIRRTTF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH++ GL IA+ANLDEV+ IR S E A++ L+++ Sbjct: 366 DLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEK--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q +AILE+RL RLTGL + + E L +I ILS Sbjct: 411 -----------FLLTEIQAQAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEG 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++L IIK ELL ++ + RRT I + + ED I EDMV+T++ GY+KR+PL Sbjct: 460 KILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLDT 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGG+G S + ++++DF+ LFI STH +LFF++ G VY+ KV +P Q++G Sbjct: 520 YRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKG 579 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+IN+L + E++TT++P F +DE ++ TK+G V++ L++F R G Sbjct: 580 TAIINLLFVGTEEKVTTVIPVKEFNKDE------FLFMCTKNGIVKKTSLNEFDTSRRDG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD D+++ V + +I++ T+ G +RF +R GR + GVRGI L +G Sbjct: 634 IIALTLDDHDDLVDVRLTNGQEEIIIGTQKGLAIRFSEDDVRKL-GRIAKGVRGIGLIEG 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M V + EG+ Sbjct: 693 DFVVGMDTVRN--------------------------------------EGD-------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L V++ GFGK+T ++R+ R GKGI +S N G +V++ V +++ Sbjct: 707 -------LLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRN--GPVVSLLVVKPDEE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 I+++S +G +IR+ VNEI RAT+GV + + + V ++ ++ Sbjct: 758 IMMLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKV 802 >gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] Length = 857 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/887 (41%), Positives = 543/887 (61%), Gaps = 83/887 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ + +K Y KCAR+ Sbjct: 3 INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARVV 62 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL K Sbjct: 63 GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 ++DDL KDTVD N+D + QEP V+ R PN+LVNGG GIAVGMATN+PTHNL EV Sbjct: 123 GEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLREV 182 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++GC A IDNP+I+LD LM+ I+ PDFPTGA I G G+K+AY TGRG I+IR + IE Sbjct: 183 IEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIYGLQGVKDAYETGRGRIIIRAKAEIE- 241 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + ++IVVTEIPY VNK ++E IA LV+E ++ I+++ DES RQG R+VI++KR A Sbjct: 242 SDESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKRDA 301 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRTK+ L Sbjct: 302 NANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKFELK 361 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 362 KAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKR------------------ 403 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 L +Q++AI+++RL++LTGL D + E + L I +ILS Sbjct: 404 --------FDLDNLQSKAIVDMRLSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCK 455 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 ++K EL VK++ RRT+I+ + ED + +V+TVSHLGY+KR PLS +R Sbjct: 456 KVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFRE 515 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG G G RD+DF ++ + H ++LFF+ G Y K + +P G+ ++G+A+ Sbjct: 516 QARGGVGSKGATHRDQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAI 575 Query: 619 INILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 N+L+++ + I I+ DE N+ YVVFATK+G V++ L + + +G IA+ Sbjct: 576 QNLLNIDSDDAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAI 635 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 + DE++ V EN++++ + G+ VRF + +R GR + GVRG+ L GD + Sbjct: 636 NIAEGDEVVDVRLTNGENELIMANRNGRAVRFDENTVRTM-GRTATGVRGMRLDDGDDAV 694 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 IV+ ND E Sbjct: 695 VGMIVV----------------------------------NDPVNE-------------- 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++ VSE G+GKR+ D+R +NR GKG++ ++ ++ G LVA+ V D++ ++++ Sbjct: 707 --TVMVVSENGYGKRSLVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDLMII 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 + G IR+ V+E R+ RAT+GV + + +K V+ SV + SE+ Sbjct: 763 NKSGITIRLAVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 809 >gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275] gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149] gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33] Length = 916 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018] gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri] gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018] Length = 860 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M + + Y Sbjct: 6 ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR L++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + A +L DL KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + +ID P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVV Sbjct: 246 AKHHIE-TKAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A ++++LN LY+ T +++ F + ++A+ +P+ F L IL F++ R+ V++R Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N A+ L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I I E IL Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L II++EL +K++ R+T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y Q+RGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+++P GS Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P P+ DES +VF T++G ++R L++F I Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + E I++ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 I V+ AD IS E Sbjct: 694 K-----IDTDFVVDADV--------------------------------------ISSE- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +Q ILTVSEKG GKRT+ ++R++NR+G G+ + +S + G ++ V+D Sbjct: 710 -------DQEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDD 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++L++ G +IRV +N IR A R T GV+I + +++VVS+ + Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAK 807 >gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829] gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] Length = 945 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/889 (41%), Positives = 545/889 (61%), Gaps = 93/889 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 + ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + + + K Sbjct: 96 ALKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKS 155 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A GEVMGKYHPHG+++IYDA+ RMAQ++S+RL L++G GNFGS+DGDPPAA RYTE R Sbjct: 156 AWTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESR 215 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L AA +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG GIAVGMATN+P HN Sbjct: 216 LTHAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHN 275 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV +IDNPD ++ LM+++ GPDFPTG +I+G GI++AY TGRGSI IR Sbjct: 276 LAEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKV 335 Query: 255 HIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 H+E G R+++V+TEIPYQVNK + E+IA+ V EKRI I+D+RDES+R+G R+VI+ Sbjct: 336 HVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVID 395 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK GA V+LN LY+ T LQ F V +AL P TL ++ ++ ++++V RRT Sbjct: 396 LKSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRT 455 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L+KA R H+L GL IAV N+DEVV IIR S + + A++ + +R Sbjct: 456 QFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFG----------- 504 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 IDD +Q AIL++RL RLTGL R+++ ++ L I+ D+L+ Sbjct: 505 IDD---------------IQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAH 549 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +LL +IK+EL + RRT+I G+ +++ ED I EDMV+TV+H Y+KR+P Sbjct: 550 PQKLLEVIKEELTEISTRFSDKRRTQISALGVQNLDIEDLIAEEDMVITVTHASYIKRLP 609 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 ++ Y++Q+RGGKG G+ ++D DFV ++F+ STH VLFF++ G VY+ KV LP+GS Sbjct: 610 VATYKSQKRGGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRH 669 Query: 613 ARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG ALIN+L L++GE T ++ FP +E +++FATK G V++ +SD+ + Sbjct: 670 ARGSALINVLPLSEGEYPTAVITTRDFPAEE------HLMFATKSGMVKKTAMSDYDKSR 723 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R G IA+ L DE+++V + ++L + G+ + F S IR GR + GVRGI+L Sbjct: 724 RDGLIAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITL 782 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G ++ M EI++ K D Sbjct: 783 KDGATMLGM--------------------------------EISNGKGD----------- 799 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L V+E G+GKRT ++ + R G G+ ++ + G L A V Sbjct: 800 ----------LLVVTEHGYGKRTPVSEYPLQKRGGLGVNT--IAMTQKKGKLSACRVVGP 847 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++++VS++G +IRV +I + SRAT+GV I + A+ + V ++ R+ Sbjct: 848 QHELMIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMH 896 >gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] Length = 878 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + +K Y KCA Sbjct: 15 LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDGDPPAA RYTE R+ Sbjct: 75 YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GIAVGMATNIP HNL Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + Sbjct: 195 NEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDESD+ G R+V ELK Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++AF+++++ RRT + Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R + D+ L+ Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432 Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +Y + + + LSE Q AI+++RL +LTGL RD + +EL + +I + LDILSS Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ IIK+E+ ++K++ RRT I V G +D+ ED I E+ V+T +++GY+KR P Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG ++N+L L++GERI +M + N Y + TK+G ++R L DF + ++G Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DEI + ++ I++ T LG + F IR GR + GVR I L + Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ A V D R+++ Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 V++KG+G+ ++ D+R+ NR G G++ + ++ G + + + +D Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQADDD 792 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E D Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844 >gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/905 (40%), Positives = 554/905 (61%), Gaps = 89/905 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D CVA IDN DID++ LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYMTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++IVVTEIPY VNKA +++ IA+L EK+I I++ DESDR+G R+V Sbjct: 243 AKAEIE-TSSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +K + RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKTKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M IC +K+ + Sbjct: 695 DEDGQDEVVGM-------------IC---------------------IKDPET------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903 D + +++++ G IR+ V ++RI RAT+GV + + K DE V V E +I+ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSETEEDII 821 Query: 904 DEAES 908 E +S Sbjct: 822 AEEDS 826 >gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327] gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327] Length = 826 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/894 (41%), Positives = 544/894 (60%), Gaps = 87/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+++YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ NK + K A Sbjct: 6 ILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP HN+ Sbjct: 126 KAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV G +A+ID+P+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR + Sbjct: 186 REVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAV 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR+G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT+ Sbjct: 306 KRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVLRRTQ 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LN A RAH+L GL I + NLDEV+ IR SP+ TA+ L+ R Sbjct: 366 YDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDR-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+EVQ +AILE+RL RLTG+ R I +E I+E IL+S Sbjct: 412 ------------FGLTEVQAKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ + IIK+ELL V + RRT + D ED I +ED+V+T++H G++KR P+S Sbjct: 460 AKQMEIIKEELLKVSEVYGDERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G +G ++EDF+ +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRSAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L GE+I T + + +++ AT +G V++ L + R+G Sbjct: 580 GRSLANIMELPPGEKIRTYINIRNFDDPH---FIIMATANGIVKKTDLKQYSNPRRTGIN 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ ++ DE++ ++ ++L G VRFP S +R GR ++GV+GI+L + ++ Sbjct: 637 AITIEEGDELIEARLTDGDHQVILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLDEAER 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ISM +T+ +ND+S Sbjct: 696 CISM---------------------------------VTTKRNDTS-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ G+GKR+ D+R++ R +G+ + +IG LV + VND D +I Sbjct: 709 -----LLAVTDNGYGKRSKVEDYRMTKRGARGV--ITIKAHEKIGNLVGLLDVNDEDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +++ G +IR V++IR+ R T GV + +R+ + R+ +S+ DE S Sbjct: 762 IITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSD--DEPTS 813 >gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190] gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902] gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945] gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136] Length = 916 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] Length = 820 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/891 (42%), Positives = 549/891 (61%), Gaps = 93/891 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + I + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 6 EKNQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAA 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+R+ L++GQGNFGS+DGD AA RY Sbjct: 66 YKKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ A LL D+ KDTVDF PNYD + EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H L E++D V +I+NP +L +ME I+GPDFPTG +I G+ GI NAY TGRG I + Sbjct: 186 PPHRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKV 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIEK +RE IV+ EIPYQVNKA ++E+IA++VREK++ I+++RDESDR+G RV Sbjct: 246 RAKTHIEKVK-NREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ +D+ILN LY+ T ++ F + ++A+ +P+ FTL+ +L F+ R +V+ Sbjct: 305 VIELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVI 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA+ RAH+L GL A+ N+DEV+ I+ S + TAR LM++ Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEK---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q AIL+++L RLTGL R+ + NE L EI+ I Sbjct: 415 ----------------FELTEIQANAILDMKLQRLTGLEREKLENEYKELMEEIERLSAI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S +L IIK ELL +K++ TPR T IVE +++ ED I E MVVT++H GY+KR Sbjct: 459 LKSEEKLNEIIKTELLEIKEKFTTPRLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VPL Y Q+RGGKG++ V ++DF+ D FI +TH +++F + G +Y KV+++P Sbjct: 519 VPLKQYEKQKRGGKGKTAVTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAG 578 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+GKA++N+L L E+I I+P F ED+S + F TK+G V+R L++F Sbjct: 579 RTAKGKAVVNLLQLQPDEKIKAIIPTTDFSEDKS------LAFFTKNGIVKRTNLAEFSN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I G A+ LD DE++ + E + + TK G C+RFP+ +R GR++ GV G Sbjct: 633 IRSKGVRAITLDESDELVEAKIVKPETKWLFIITKKGMCIRFPVHDVREM-GRSARGVTG 691 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I +GD V+ Sbjct: 692 IRFKYEGDYVVG------------------------------------------------ 703 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +E QE EQ +LTVSEKG GKRT + ++R +R GKG+ A ++ ++ G +V V Sbjct: 704 AETIAQE----EQELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLT--HKTGDVVGVV 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V +N +++++ G +IRV + IR A R T GV+I ++VVS+ + Sbjct: 758 TVENNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIAK 808 Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 ++ G KRT+ +F SN KG+RA + + +E+ V P + + +++ KG I Sbjct: 617 TKNGIVKRTNLAEF--SNIRSKGVRAITLDESDELVEAKIVKP--ETKWLFIITKKGMCI 672 Query: 864 RVPVNEIRIASRATKGVV-IFSTAKDERVVSVERIRESE 901 R PV+++R R+ +GV I + + VV E I + E Sbjct: 673 RFPVHDVREMGRSARGVTGIRFKYEGDYVVGAETIAQEE 711 >gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK408] Length = 826 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] Length = 869 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/905 (40%), Positives = 561/905 (61%), Gaps = 91/905 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G +K Y K A Sbjct: 7 IIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ N+D + +EP VL R PN+LVNG GIAVGMATN+PTHNL Sbjct: 127 SKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNL 186 Query: 196 GEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+DGC+A ID ++++ LM+ I+ PDFPTGA I G G+K+A+ TG+G IV+RG + Sbjct: 187 SEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGKGRIVLRGKA 246 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE T + E+I+++EIPY VNKA +++ IA+LV EKRI I+++ DESDRQG R+V+++ Sbjct: 247 EIE-TENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRIVVDV 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A++ V+LN+LY+ T+LQS FSVN +AL +P+ L ++KAFV R EVV+RRTK Sbjct: 306 KRDANSSVVLNKLYKMTALQSSFSVNNIALVNGRPKLLNLKDLIKAFVDHRHEVVIRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH+L GL IA N+DEV+ II+ S +P A LM+R Sbjct: 366 YDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS++Q+RAI+E+RL +LTGL +D +R E + I +IL + Sbjct: 412 ------------FSLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEILEND 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +IK EL +KD+ R+T IV ++ ED ++M++T+SH+GY+KR PLS Sbjct: 460 DLCMKVIKDELQEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKRTPLS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G G RDEDFV ++ S H ++L F++ G Y KV+ +P G+ ++ Sbjct: 520 EFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSK 579 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+A+ N+L++ +++ + D N+ Y++F TK G +++ L + + ++ Sbjct: 580 GRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSRPRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-- 729 G A+ L D ++ V N++L+ + G+ +RF +A+RV GR + GVRG++L Sbjct: 640 GVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGMTLDD 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M Sbjct: 699 DSNDEVVGMV-------------------------------------------------- 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 C + K KE +L VSE+G+GKR++ D+RI+NR GKG++ ++++ + G LVA+ V + Sbjct: 709 CIKDKEKET-VLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIKNVTE 765 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI---RESEIVDE 905 + I++++ G IR+ V+++ + RAT+GV + + K ++ + SV ++ E EI +E Sbjct: 766 ENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEE 825 Query: 906 AESTE 910 E Sbjct: 826 KAQRE 830 >gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] Length = 836 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/901 (41%), Positives = 546/901 (60%), Gaps = 83/901 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++EE IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 AEEEMSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIPTHNLGEV+ ++DNPD + LM+++ GPDFPTG V+LG++GI+ AY TG+G+ Sbjct: 182 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGT 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+T R+QI+V EIPY VNKA ++E+IAEL REK I I D+ DE+DR+G Sbjct: 242 IIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL ++ +EE Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA RAH++ GL IA+ ++DE+++IIR S E A+ ELM + Sbjct: 362 VVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYG----- 416 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS+ Q +AIL++RL RLTGL R+ I E L I + Sbjct: 417 ---------------------LSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADY 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R R+ II EL ++ RRT + G + ++EDED I ++D+VVT++H G Sbjct: 456 KDILAHRERIQQIIYDELKEIQRRFGDARRTELQVGDITNLEDEDLIEQQDIVVTLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P+ +++Q RGG+G G+ + +DF+ L STH +LFF++ G V+ K + + Sbjct: 516 YIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G +IN+L ++ E+I ++ + + F TK G V+R + +F Sbjct: 576 PEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFK 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++VE + ++++ T G V F SA+R GR + GVRG Sbjct: 636 NIRSNGLKAINLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSM-GRAAAGVRG 694 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +GD VI L DS V Sbjct: 695 VRLREGDFVIGAG----------------------------------QLNPDSRV----- 715 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 L +SEKGFGK+T + ++ I R GKGI+ +V++ N G L + Sbjct: 716 --------------LVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKN--GPLAGLTT 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V+ ++ I+LV+ +G +IR V + RAT GV + +V ++ R+ + E D+ Sbjct: 760 VDGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDE 819 Query: 907 E 907 + Sbjct: 820 Q 820 >gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673] gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673] Length = 850 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/893 (41%), Positives = 544/893 (60%), Gaps = 92/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCA Sbjct: 9 VHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ G V +IDN + L+ ++EI++GPDFPTGA ILGR GI+ AY TGRG I + Sbjct: 189 REVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V IE + + +IVVTE+PY VNKA ++EKIAELV+EK++ I DLRDES+R+G RV Sbjct: 249 RAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNREGMRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+V++N+L ++T LQ F V M+AL +P L +L+ ++ +EEVV Sbjct: 309 CIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYYLQHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL A+ ++DEV++IIR S N A+ +LM+R Sbjct: 369 RRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AI+++RL LTGL R+ + NE L +I E I Sbjct: 419 ----------------FALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+I++E++ + D+ RRT I DM ED I +D+VV +++ GY+KR Sbjct: 463 LADEKKLLGVIREEIIVISDKYGDERRTAIGYDEYDMSAEDLIPDDDVVVAMTNFGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ DED++ DL + + H V+FF++ G VY+ K + +P Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L GE+IT+I+ E E ++ Y+ AT++G V++ L ++ + + Sbjct: 583 RTARGTAIVNLLQLMPGEKITSIIAMKEFE---DDKYLFMATRNGMVKKTSLKEYENVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ DI L TK G C+RF + +RV GR S+GV G+ Sbjct: 640 NGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRV-TGRVSMGVIGMKFD 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VI M MS+Q Sbjct: 699 EDDEVIGM------------------QMSSQ----------------------------- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +L SE G+GKRT +F NR GKG+R + I++ G L+ V+++ Sbjct: 712 ------GECLLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKI--IDKTGDLIGAKLVDNS 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901 +I+L++++G +I++ VN+I I R T GV + S D V S+ ++RESE Sbjct: 764 REIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAVASIAKVRESE 816 >gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] Length = 842 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID+++LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTS-THDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ +KD+ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] Length = 823 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 548/901 (60%), Gaps = 85/901 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ ++ LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +R IIK+EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILASEARQRQIIKEELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ E ++ + T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHEDVNLFMVTEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV T DIL+ TKLG +RF S +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDEGDRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ A VL+AD Sbjct: 692 GIKLNTGDVVVG-AGVLNAD---------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E Q + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 711 -ESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I +EI D Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIED 819 Query: 905 E 905 E Sbjct: 820 E 820 Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 105/223 (47%), Gaps = 16/223 (7%) Query: 534 VREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + ED+ + V+ G VKR + YR RR G + + + + D + + + + + +L Sbjct: 609 IHEDVNLFMVTEFGVVKRTAIEEYRNIRRSG--LNAINLDEGDRLISVSVTTGNQDILIG 666 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + LG + E RL R + + LN G+ + DES V Sbjct: 667 TKLGIAIRFSESDVRL-----MKRAAHGVRGIKLNTGDVVVGAGVLNADESEAQ---VFT 718 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVR 707 ++ G +RN + R GK + + ++++VE +++++L ++ G+ +R Sbjct: 719 ISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIR 778 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 F ++ I V G+ GV+ +L +GD+V S+A++ A+ + +E Sbjct: 779 FNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEDEE 821 >gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132] gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132] Length = 837 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/896 (41%), Positives = 553/896 (61%), Gaps = 89/896 (9%) Query: 8 SDEEEEKG--ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++E E G I ++I DEM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++GV Sbjct: 4 NNENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGV 63 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 N+ Y K ARI GEV+GKYHPHG++++YD + RMAQDWSLR L++GQGNFGSVDGD P Sbjct: 64 YHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSP 123 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL++ A +L D+ K+TVDFR N+D S QEP VL +R PN+L+NG GIAVG Sbjct: 124 AAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVG 183 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+ HNL EV +G A IDNP+I ++ LM I+ PDFPTG +I G G+K A+ TGR Sbjct: 184 MATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYGYGGVKAAFETGR 243 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G +VIR V++ E + +EQIVVTEIPY VNKAAM+EK AELV +K+I I+ +RDESDR Sbjct: 244 GRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESDR 303 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 QG R+V +LK+ A +V+LN LY+YT LQ+ FS+N VAL KPE L +++ +V R Sbjct: 304 QGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVHGKPETLNLKQLIEHYVKHR 363 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+ RRT+Y L +A RAH+L GL IA+ +LDEV+ +IR S +P+ AR LM++ Sbjct: 364 LDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEK----- 418 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q RAIL++RL RLTGL RD I E + I+ Sbjct: 419 ---------------------FALSEIQARAILDMRLQRLTGLERDKITEEYKQIKALIE 457 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVS 543 E IL+S + +IK +LL +K + RR++I V G ++ ED I ++M+VTV+ Sbjct: 458 ELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNI--EDMIPDDEMLVTVT 515 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR LS Y++Q RGG G GV +D+D+ LF+ + H +LFF+ G +Y +V Sbjct: 516 SQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYWLRV 575 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNK 661 + +P G+ ++G+A+ N++++ ++I ++ DE N Y+V T++G V++ Sbjct: 576 FEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVKKTL 635 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L + + ++G IA+ ++ D+++ V + I++ G+ VRF S IR GR + Sbjct: 636 LEMYSRPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPM-GRGA 694 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+GISLA+ D+ I M V DA Sbjct: 695 TGVKGISLAEDDKAIGMICVNRPDAQ---------------------------------- 720 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L VSEKG+GKR+ D+RI++R KG++ ++S+ ++G L Sbjct: 721 ------------------LLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSE--KVGNL 760 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA+ V D D +++++ +G IR+ V+++R+ R T+GV + + + S+ RI Sbjct: 761 VAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASITRI 816 >gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289] gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289] Length = 860 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/897 (41%), Positives = 553/897 (61%), Gaps = 86/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL G +P +L +K FV R +V +RRT++ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRHDVTIRRTRF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L L A N+DEVV +IR S P A++ L +R Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G D E+Q++AI+++RL++LTGL D + E + L IK+ +IL + Sbjct: 416 -----FGFD------ELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R ++K EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 465 RCREVMKAELQEVKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G A+G Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+LSL G+ + + +D++ ++ +VVFATK G V++ L + + +G Sbjct: 585 RAIQNMLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ ++ DE++ V +N++++ + G+ RF S IR GR S GVRG+ L + Sbjct: 645 IAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V ND E Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LVA+ V D + Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITE--KTGKLVAIKNVTDAN 770 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907 +++++ G +IR+ V E R+ RAT+GV + + AK V+ SV ++ SE+ + E Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMETQVE 827 >gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355] Length = 916 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1] Length = 826 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 836 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/883 (42%), Positives = 551/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+++P+ LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ TSLQ+ FS NM+A+ P+ TL I+ +++ ++EV+ R Sbjct: 302 IEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FQLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II QE+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPDRISAIIIQEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEVEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ +++ +N + F T+ G V+R S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEEETIQTIINARKED--IDNKFFFFTTRQGLVKRTNASEFGNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ TK G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKDGDELINVLLTDGSEDIIIGTKSGYSVRFEEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD VI + RI D++E Sbjct: 693 DGDLVIGAS-----------RIS--------------DSQE------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V + Sbjct: 709 ---------VLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKN--GQLAGLVTVTGH 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR + ++ R+T GV + +D ++V+ Sbjct: 758 EDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVT 800 >gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] Length = 829 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/889 (41%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ L+++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ DS V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806 >gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594] Length = 916 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/900 (41%), Positives = 560/900 (62%), Gaps = 91/900 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 2 QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD S +EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D ++DNPD+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK+ + E I +LV+EKRI + +RDES+R+G R V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T +Q+ FS NM+A+ P+ ++ IL++++ ++EVV R Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM+R Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L + E I TI+ +D+++ + Y+ FAT+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKDQTA--DHYLFFATRQGIVKRTNVNEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + D+++ TK G VRF + +R GR + GVRGI L Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD ++ IV S D E Sbjct: 693 EGDHLVGATIV------------------------SDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +SE G+GKRT + ++ R GKGI V+ N G L + V + Sbjct: 709 ---------VLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR + I R+T GV + ++ ++++ +VD A+ E Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTF------ALVDAADQKE 811 >gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a] Length = 878 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/892 (40%), Positives = 551/892 (61%), Gaps = 65/892 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M + +K Y KCA Sbjct: 15 LIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 GEV+GKYHPHG+A++YDAL R+AQD+S+R LI+G GNFGSVDGDPPAA RYTE R+ Sbjct: 75 YTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDT+D+ NYD EP VL ++PN+LVNG GIAVGMATNIP HNL Sbjct: 135 AKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D VA +DNP+ ++ +++ I+GPDFPTG +I+G +GI++AY TGRG I +RG + Sbjct: 195 NEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYYTGRGKITLRGKAE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + G+ +I+VTEIPY VNK+ +LE +L+R+KRI I++LRDESD+ G R+V ELK Sbjct: 255 IVE-EGNHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVYELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +A V+LN+LY +T LQ V M+AL +P++ TL+ IL ++AF+++++ RRT + Sbjct: 314 RDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAH+L G +A+ N+DEV+ I+R S + + + LM+R + D+ L+ Sbjct: 374 DLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMER-FKEDDLAKLLQRAM 432 Query: 436 DSSYT-IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +Y + + + LSE Q AI+++RL +LTGL RD + +EL + +I + LDILSS Sbjct: 433 GENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSD 492 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ IIK+E+ ++K++ RRT I V G +D+ ED I E+ V+T +++GY+KR P Sbjct: 493 ERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDI--EDLIPEEECVLTYTNIGYIKRQP 550 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + VY Q+RGGKG SG+ R+EDFV D+FI STH ++LF ++ G +YK K + +P GS Q Sbjct: 551 VDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQ 610 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG ++N+L L++GERI +M + N Y + TK+G ++R L DF + ++G Sbjct: 611 SRGTNIVNLLQLDEGERIAAMMKTSD---FAENKYFICVTKYGKIKRTPLYDFRNVRKNG 667 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DEI + ++ I++ T LG + F IR GR + GVR I L + Sbjct: 668 LRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAAGVRAIKLRED 726 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ A V D R+++ Sbjct: 727 DYIVGAAKVYSDDM----------------RILT-------------------------- 744 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 V++KG+G+ ++ D+R+ NR G G++ + ++ G + + + +D Sbjct: 745 ----------VTDKGYGRLSALSDYRMQNRGGNGLKNYKIR--DDRGYVCGIRSIQADDD 792 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +IL+S G +IR+ N++R+ R GV + + ++RVV+ R E D Sbjct: 793 VILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETAD 844 >gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] Length = 813 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/882 (42%), Positives = 530/882 (60%), Gaps = 83/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I EM+ SYLTY+++VI+GRA+PD+RDGLKPV RRIL+ M + G +K + K A Sbjct: 9 ILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G+V+ KYHPHG+AA+YD + RMAQD+ LR L+EGQGNFGS+DGDPPAA RYTE RL Sbjct: 69 KTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + AH +L D+ K+TVDF NYD S +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +ID PDI ++ L II+GPDFPTGA+ILG GI+ AY TG+GSI +R + Sbjct: 189 GEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSITLRARTQ 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R +IVVTE+PY VNKA ++E+IAEL R+++I I DLRDESDR G R+ IEL+ Sbjct: 249 IETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAIELR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ VILNQL++YT+LQ F + M+AL +P L +L ++ + EV+VRRT++ Sbjct: 309 RDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLEVIVRRTQF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DRAH+L GL A+ +DEV+ IR SP + AR LM Sbjct: 369 DLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMS---------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +EVQ + IL+++L RLT L R+ ++ E + L I +L+S Sbjct: 413 ----------NFGFTEVQAQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAVLASEK 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 IIKQEL +K + PRRTRI D++ ED I ED+VVT+SH GY+KRVPLS Sbjct: 463 MQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVVVTISHSGYIKRVPLST 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR QRRGG+G G ++EDF+ +F +TH ++FF+ G VY+ + +P S QARG Sbjct: 523 YRQQRRGGRGVQGAGTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARG 582 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N++ L GE++ T++P E + Y+ FAT+ G V++ +++F + +G IA Sbjct: 583 TAIVNLIPLLPGEKVNTVIPVKEGDQEEG--YIFFATRSGWVKKTAVTEFQNVRSTGIIA 640 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 +KL+ D ++ ++I+L + G +RF +R GR++ GV+GI+L Sbjct: 641 IKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRPM-GRDTRGVKGITLGP---- 695 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 DE + M D V G Sbjct: 696 -------------DEYVVGM----------------------DGVVPG------------ 708 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L VSE G GKRT ++ R +G+ + G LV V V + + ++L Sbjct: 709 --ADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLP-ERHGRLVGVKAVTEGNDLML 765 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VS++G LIR+PV E+R + R T+GV + + ++RV +V ++ Sbjct: 766 VSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQV 807 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 60/107 (56%), Gaps = 7/107 (6%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKL--DSRDEILSVETCTQENDILLTT 700 +L VV T G +R L+++ R G I ++L + ++ V+ T+ ND++L + Sbjct: 710 DLLVVSETGVG--KRTPLTEYPTYKRGARGVITIQLLPERHGRLVGVKAVTEGNDLMLVS 767 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + G +R P+ +R +GRN+ GV+ ++L D+V ++A V+ D + Sbjct: 768 EQGVLIRIPVEEVR-RSGRNTQGVQLMNLDANDRVSAVAQVVTRDEE 813 >gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK72] Length = 826 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+I+VTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADNRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821 >gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] Length = 855 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/888 (40%), Positives = 545/888 (61%), Gaps = 86/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM ++G +K Y KCA Sbjct: 7 IIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKPYKKCA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y AL RMAQ+WS+R L++GQGNFGSVDGD AA RYTE RL Sbjct: 67 RIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 Q ++DDL K+TVD N+D + +EP V+ + PN+LVNG GIAVGMATNIPTHNL Sbjct: 127 QLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNIPTHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D CVA IDN DID+D LME ++ PDFPTG I G G++ AY TGRG +V+R + Sbjct: 187 GEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIYGMQGVREAYETGRGRVVMRARAE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IV+TEIPY VNKA ++++IA+LV EK+I I++ DESDR+G R+V+++K Sbjct: 247 IEPGE-NHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMRIVVDVK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T LQ+ FSVN +AL +P +L + FV R +VV+RRT+Y Sbjct: 306 RDANANVVLNKLFKMTPLQTSFSVNCIALVKGRPRLLSLKDCISNFVNHRHDVVIRRTQY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA N+DEVV IIR + NP+ A LM R Sbjct: 366 DLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSR--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L EVQ +AI+E+RL +LT L ++ +RNE + L +I+ ILS Sbjct: 411 -----------FELDEVQAKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDED 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + +IK EL+ VK++ RR+ IV + ED ++MV+T+SH+GY+KR PL+ Sbjct: 460 LCMKVIKDELIEVKEQFGDERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGG G G RD DFV ++ + H ++LFF+ G + KV+ +P G+ ++G Sbjct: 520 FRAQARGGVGSKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAKNSKG 579 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ + I + D + YVVF TK+G +++ L ++ + +G Sbjct: 580 RAIQNMLNIDPDDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPRANGV 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-- 731 A+ + D ++ V EN+I++ + G+ +RF S +R GR + GVRG+++ + Sbjct: 640 NAITIREDDRVIGVRLTNGENEIIIANRNGRAIRFHESKVRAM-GRTATGVRGMTIDEDG 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M V ND E Sbjct: 699 SDEVVGMVCV-----------------------------------NDPQTET-------- 715 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 I+ VSE+G+GKR+ D+R++NR KG++ ++++ + G LVA+ V D + Sbjct: 716 --------IMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITE--KTGKLVAIKVVTDEN 765 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898 +++++ G IR+ V ++RI RAT+GV + + K ++++ SV +++ Sbjct: 766 DLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQISSVCKVQ 813 >gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] Length = 902 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/908 (41%), Positives = 560/908 (61%), Gaps = 41/908 (4%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 ++D + K VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ Sbjct: 4 ANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 WN Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +S+R +L++GQGNFGSVDGD A Sbjct: 64 WNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K AH +L D+ ++TV+F NYDGS +EP+VL R+P +LVNG GIAVGM Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 AT+IP HNL + + GC+ ++++P+ +D L++I++ PDFPTGA I G TGI+ Y TGRG Sbjct: 184 ATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIYGLTGIRAGYQTGRG 243 Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +VIR SHIE +G+RE IVV EIPYQVNK+ ++EKI ELVREK + IA+LRDESD Sbjct: 244 RVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDESD 303 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G R+VIELKRG +A+V+LNQLY+ T LQ FS+NMVAL +P L IL F+ Sbjct: 304 KDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQPRLLNLKQILNEFLRH 363 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EVV RRT + L KAR H+ G A+A++N+DE++ +I+ S + + AR LM R+W + Sbjct: 364 RREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAWQS 423 Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + + +++ D + + DG +LS+ Q RAIL + L LTGL +D+I Sbjct: 424 ALVSEMLSRSDLDLTLARPEWLPENRGLHPDG-YWLSDEQARAILRMSLRNLTGLDQDEI 482 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDC 532 E SL I + LDIL+ R+ II+ EL+ ++ + RR+ I G D+ DED Sbjct: 483 VKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDERRSEINPFGGGDIADEDL 542 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I +MVVT++H GY+K P S Y+AQ+RGG+G+ +DEDF+ LF+ +TH ++ F Sbjct: 543 IPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCF 602 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVV 649 ++LG + KV+RLP G +RG+ + N++ L+ GE+++ I+P FPEDE YV Sbjct: 603 TNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFPEDE------YVF 656 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 FAT G V++ +LS F ++ G A+ L D ++ V + +DI+L + LG+ +RF Sbjct: 657 FATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 716 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 +AG G A+ D +S ++ + + + + Sbjct: 717 ----EYWAG----GAGDEDEAEND--VSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGG 766 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 L + + ++ E +L+ +LT ++ G+GKRT D+ + G+GI A Sbjct: 767 LRGMRLPENGRIVSLLTAEIGSDLQ-----VLTATQNGYGKRTPIADYTRKGKGGQGIIA 821 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 D + N G L+ V+ D ++L++ G LIR V ++R RA GV + + + Sbjct: 822 IDTGERN--GELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVRLINLDEGT 879 Query: 890 RVVSVERI 897 +VS+ER+ Sbjct: 880 TLVSLERV 887 >gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK678] Length = 826 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEIKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis] gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis] Length = 916 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/920 (41%), Positives = 558/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +++RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum ATCC 824] gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018] Length = 830 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/898 (40%), Positives = 557/898 (62%), Gaps = 89/898 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I+ EM+ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 EGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG++++Y AL R+AQD++LR +++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A ++ D+GK+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +IDNP+ + LM I+GPDFPT +I+G++GI+ AY TGRG I +R Sbjct: 184 HNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+VI Sbjct: 244 KSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+K+ A++++ILNQLY++T LQ F +NM+AL +PE L IL+ ++ F+E+V+ RR Sbjct: 304 EIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L KA RAH+L GL IA+ ++DEV+ +IR S + A+ LM + Sbjct: 364 TEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+L+L RLTGL R+ I +E N L I E IL+ Sbjct: 412 --------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +++L II+ EL +K + R+T I D++ ED I E++V+T++H GY+KR+ Sbjct: 458 DENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRIN 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y +Q+RGG+G + +++DFV ++FI STH ++LFF++ G +YK K +++P Sbjct: 518 ADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRA 577 Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L L+ E+I ++ E DE S ++V TK G +++ + + I +S Sbjct: 578 AKGTNVVNLLQLDPNEKIQAVISIKEFDEES----FLVMCTKKGIIKKTVVGMYKNIRKS 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE++SV ++DI++ T G +RF +R GRN++GV+GI+L + Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M + + +++ + +N ++ E +CQ Sbjct: 693 DDFVVGMEVP------------------------NQESDVLVVSENGFGKRTHVGEYKCQ 728 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +R GKG+ VS ++ G LV V V D D Sbjct: 729 -----------------------------HRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAE 907 +++L+++ G IR+ V++I SR GV + DE+V+++ +I +SE ++++E Sbjct: 758 ELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 815 >gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] Length = 826 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 554/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+I+VTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGTADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + ++ D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEANDKEDVAE 821 >gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] Length = 848 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/881 (41%), Positives = 544/881 (61%), Gaps = 85/881 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Sbjct: 2 QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R L++GQGNFGS+DGD AA RY Sbjct: 62 YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL+K ++ DL K+TVDF N+D + QEP V+ R PN+LVNG GIAVGMATN+ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG I G +G+++AY TGRG +V+ Sbjct: 182 PTHNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE + ++IVVTEIPY VNKA +++ IA+L +K+I I+++ DE+DR+G R+ Sbjct: 242 RAKAEIE-SHPTHDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R EVV+ Sbjct: 301 VIDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHEVVI 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM R Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMAR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q RAI+E+RL +LTGL +D + E L +I +I Sbjct: 411 ----------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS+ +IK ELL VK++ RR+ IV + ED ++MV+T+SH+GY+KR Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDNRRSEIVYASEEFNPEDFYADDEMVITISHMGYIKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 PLS +RAQ RGG G G R+EDF+ ++ + H ++LFF+ G Y KV+ +P G+ Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ N+L++ + +T + D N+ YV+F TK+G +++ L + + Sbjct: 575 KTSKGRAIQNLLNIEADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ + D ++ V N+I++ + G+ +RF SA+R GR + GVRGI+ Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693 Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 L + D+VI M IC +K+ + Sbjct: 694 LDEDGQDEVIGM-------------IC---------------------IKDPET------ 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + I+ VSE G+GKR+ D+R +NR GKG++ +++ ++ G+LVA+ Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGSLVAIKS 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IR+ V ++RI RAT+GV + K Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEK 801 >gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+ G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRCVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 >gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK330] Length = 826 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612] gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612] Length = 834 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/890 (42%), Positives = 544/890 (61%), Gaps = 93/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +EM++ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K K A Sbjct: 10 IKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ RMAQ++S R + I GQGNFGS+DGD AA RYTE ++ Sbjct: 70 RIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEAKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF PN+D S EP VL AR P++LVNG GIAVGMATNIP HNL Sbjct: 130 SKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDG +A IDNPDI +D LM I+GPDFPT ++LG++GIK AY TGRG I IR Sbjct: 190 GEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIRSKVE 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 +E T R+QIVVTEIPY VNK+ ++EKIAELV+EKR+ IADLRDE+D ++G R+VIEL Sbjct: 250 METTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRIVIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREE 367 KR A+ +ILNQLY++T LQ F V M+AL G +P+ L +L +V ++E Sbjct: 310 KRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVEHQKE 369 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 ++ RRT + L KA RAH+L GL IA+ N+DEV+ +IR + + + A+ +LM+R Sbjct: 370 IITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMER------- 422 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L+E+Q +AIL++RL RLTGL R+ I E L I E Sbjct: 423 -------------------FALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEY 463 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L IIK EL +K++ RRT + D + ED I E++V+T++H+GY Sbjct: 464 KAILADEQLVLNIIKDELTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMTHIGY 523 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ YR+Q+RGGKG + + R+ DFV LF +TH +LFFS+ G VY+ K + +P Sbjct: 524 VKRISADTYRSQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVP 583 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G ARG A++NIL L+ E+ITT++P E + + ++ ATK G +++ L+++ Sbjct: 584 EGGRTARGTAIVNILQLDPDEKITTMIPVKEFTA---DKCLIMATKQGIIKKTDLTEYDS 640 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++G I + L DE+++V + DI++ T+ G +RF +R R S+GVRGI Sbjct: 641 SRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLK-RTSIGVRGI 699 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D +V+ D ++S D Sbjct: 700 ELRDDD------VVVGMD------------------IVSDDL------------------ 717 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+L VS+ G+GK TS +R R GKG++ V+K + G LV + Sbjct: 718 -----------FVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTK--KTGELVGFCVI 764 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + +I++++++G +I++ N+I R T+GV + E++ ++ ++ Sbjct: 765 SRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKV 814 >gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] Length = 870 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + +N Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I LK DS V Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%) Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 YDE + K +RR L+ G E+ SL+++ +E +E ++T+S Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+ KR ++ +F+ NR G+GI+ +V + + L++ + +D ++ ++KG + R Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569 Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901 EI SR KG+ I + E++ +V + E + Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608 >gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG] Length = 870 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/890 (42%), Positives = 549/890 (61%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + +N Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I LK DS V Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%) Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 YDE + K +RR L+ G E+ SL+++ +E +E ++T+S Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+ KR ++ +F+ NR G+GI+ +V + + L++ + +D ++ ++KG + R Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569 Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901 EI SR KG+ I + E++ +V + E + Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608 >gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK353] Length = 826 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] Length = 787 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/870 (42%), Positives = 543/870 (62%), Gaps = 85/870 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V+R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + +++++D G +IR + I RAT GV Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGV 787 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 824 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/902 (43%), Positives = 549/902 (60%), Gaps = 85/902 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 NVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I +E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 ILSS +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILSSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ + NL++V T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVQEDV-NLFMV--TEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV DILL TKLG +RF + +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ A VL+AD Sbjct: 692 GIKLNAGDVVVG-AGVLNAD---------------------------------------- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E Q + T+SE+GFGKR + + + R GKG + ++ N+ G +V+V Sbjct: 711 -ESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVSVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI + Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIEE 819 Query: 905 EA 906 +A Sbjct: 820 DA 821 >gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] Length = 870 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/890 (42%), Positives = 548/890 (61%), Gaps = 85/890 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++D+PD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + +N Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-FN----- 415 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL RD + +E + I + Sbjct: 416 --------------------LSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++ Q RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L + GE+I T++ E ++ ++ Y+ F T++G V+R + +F Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHEGDN--DDRYLFFVTQNGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L +DE+ +V + +++IL+ T LG V F +R GR + GVRGI Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ I LK DS V Sbjct: 693 RLRDHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ ++++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + I++++D G +IR + + RAT GV + D +V ++ ++ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 78/159 (49%), Gaps = 24/159 (15%) Query: 748 YDERICYMKHMSAQRR--LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 YDE + K +RR L+ G E+ SL+++ +E +E ++T+S Sbjct: 469 YDELLDIQKKFGDKRRTELLVG---EVLSLEDEDLIE-------------QEDVVITLSH 512 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+ KR ++ +F+ NR G+GI+ +V + + L++ + +D ++ ++KG + R Sbjct: 513 NGYVKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLIST---STHDVLLFFTNKGKVYRS 569 Query: 866 PVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901 EI SR KG+ I + E++ +V + E + Sbjct: 570 KGYEIPEYSRTAKGIPIINLLGVGAGEKIQTVINVHEGD 608 >gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] Length = 815 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/887 (41%), Positives = 550/887 (62%), Gaps = 91/887 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++GI + +T EM+ S++ YA++VI+ RA+PD +DGLKPV RRI+ GM ++G +K Y Sbjct: 2 EQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQ +S R +L++G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A ++ D+ KDTVDF PNYDG +EP VL +R PN+L+NG GIAVGMATNIP Sbjct: 122 ESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 +HNLGEVVD +AV NPDI + LM+ I GPDFPTGA ILGR IK AY TG G IV+ Sbjct: 182 SHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYILGRGAIKKAYETGNGLIVM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE +++ I+VTE+PY VNKA ++EKIA V+EK I I +LRDESDR+G R+ Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +VILNQLY+ T+LQ+ F VN +AL +P+ +L ++ ++ +E+V+ Sbjct: 302 VIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGEPKTLSLKEMINVYLEHQEDVIR 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA DRAH+L GL A+ +D ++ +IR S E ++ LM D Sbjct: 362 RRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLM----------DE 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 D +SE Q +AI E++L RL GL R+ I NELN+L I + DI Sbjct: 412 FD----------------MSERQAKAIREMQLQRLAGLEREKIENELNTLLETIADLKDI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+++ R++ II QELL +K + RRT I++G D+EDED I ED+V+++++ GYVKR Sbjct: 456 LANKERIIAIIDQELLEIKAKYGDKRRTEIIQGSFDIEDEDLIPEEDVVISLTNNGYVKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+AQ RGGKG G+ ++D V L +STH +L F++ G VY+ K + +P Sbjct: 516 MPIDTYKAQNRGGKGIKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFG 575 Query: 611 PQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 QA+G +IN+L++++ E++ T I P DES ++ F TK G V+R L +F Sbjct: 576 RQAKGLPIINLLNMDKDEQVKTMISITPSEVDESH----FLFFVTKDGLVKRTGLPEFEN 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +SGK+A+ L DE++ V+ +++ILL G+ +RF + +R GR++ GV+G+ Sbjct: 632 IRQSGKLALTLREGDELVDVKLTNGKSEILLAAANGKAIRFDENDVRPM-GRSASGVKGM 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 ++ +DS + G + Sbjct: 691 NV-----------------------------------------------DDSHIIGVTTN 703 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 Q IL ++EKG+GK + ++R+S R GKG++ ++++ N G LV++ V Sbjct: 704 TEGQN-------ILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKN--GELVSIKAV 754 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ +++++++G +IR+P+ +++ A RAT+GV + + V S+ Sbjct: 755 EGNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGEGASVSSI 801 >gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland] gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland] Length = 831 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/889 (40%), Positives = 551/889 (61%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +IDN D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G R +IVVTEIPYQVNK+ ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-RNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLGDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A] Length = 858 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I LK +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLKTES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319] gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319] Length = 862 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/897 (40%), Positives = 550/897 (61%), Gaps = 86/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RR ++ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L L A N+DEVV IIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 E+Q++AI+++RL++LTGL D + E L IK+ +IL++ Sbjct: 416 -----------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 465 RCKEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+LSL+ G+ + + +D+ ++ YVVFATK G V++ L + + +G Sbjct: 585 RAIQNMLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ ++ DE++ V N++++ + G+ RF S IR GR S GVRG+ L + Sbjct: 645 IAININDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDEDG 703 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+VI M +V ND E Sbjct: 704 QDEVIGMIVV-----------------------------------NDPVNE--------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LVA+ V D++ Sbjct: 720 -------TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDN 770 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907 +++++ G +IR+ V E R+ RAT+GV + + AK ++ SV ++ SE+ + E Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDIIASVCKVMSSEMESQVE 827 >gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50] Length = 704 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/700 (49%), Positives = 481/700 (68%), Gaps = 12/700 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 547 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 548 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 607 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 608 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 664 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ +GK+A+KL DE++ V+ + E++++L + G+ V Sbjct: 665 RLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704 >gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] Length = 809 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/890 (41%), Positives = 558/890 (62%), Gaps = 89/890 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D E + I V I EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M +G+ Sbjct: 2 ADIENKMNIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K +R+ GEVMGKYHPHG++AIYDA R+AQD++LR L++GQGNFG++DGD AA Sbjct: 62 DKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+QK A +L D+ KDTVDF PNYD + +EPVVL +++PN+LVNG GIAVGMA Sbjct: 122 PRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+D IDN DI +D LM+ ++GPDFPTGA I+G GIK AY TGRG Sbjct: 182 TNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I +R V++IE+ + ++ +I+VTEIPYQVNK ++ KI EL+++KRI I+DLRDES+ +G Sbjct: 242 ITVRAVANIEEHN-NKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKR A+ ++ILN LY++T +Q+ F V +AL +P+ L ++ +V + + Sbjct: 301 IRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRD 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RR ++ L KA DRAH++ GL A+ ++DE+++IIR S + A+ +LM+R Sbjct: 361 VITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYS--DAQEKLMERFG----- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 +++Q +ILE+RL RL GL R+ +++E NSL EI Sbjct: 414 ---------------------FTKIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARL 452 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL + +L IIK+EL+ +K++ RRT I ++E E+ I ED+V+T++ GY Sbjct: 453 KEILGNERLILNIIKEELIEIKEKFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGY 512 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P Y+ Q RGGKG + +++D+V LF+ STH+ +LFF++ G VYK K + +P Sbjct: 513 IKRIPSDTYKVQNRGGKGVVALTTKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIP 572 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G QA+G+ +IN+L L GE++ ++P + + ++ Y++ ATK G ++R + F Sbjct: 573 EGKRQAKGQNIINLLELMHGEKVNAVIPV---KDAGSDEYLIMATKKGTIKRTSVELFKA 629 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I + G A+ L DE++ V T E+ +L TK G ++F +S IR GR GVRGI Sbjct: 630 IRKVGMKAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREI-GRTGQGVRGI 688 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K D+V+SM + + EG Sbjct: 689 KLDKDDEVVSMNL---------------------------------------ASEG---- 705 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L +SE G+GKRT + ++++ NR GKG++ V+ ++ G +V+ V Sbjct: 706 ----------KHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTGFVVSSKMV 753 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVER 896 N +D+II+++ G +IR+ V +I + R T+GV+I KDE ++V+V + Sbjct: 754 NPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAK 803 >gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G + D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I T++ D S ++ Y+ F T+H ++R + +F I + Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHVLLKRTSVKEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ TK G VRF SA+R + R + GV+G++L Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ +++ D DE Sbjct: 693 EGDTVVGASLI----TDQDE---------------------------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ +++ N G L + V + Sbjct: 709 ---------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +++++D G +IR + I RAT GV + +D ++V+ + +E Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAE 808 Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVEDDDFVRELVS---TSTHDHLLFFTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 609 >gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK405] Length = 826 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/897 (41%), Positives = 553/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV+R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAE 821 >gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] Length = 842 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/906 (39%), Positives = 551/906 (60%), Gaps = 89/906 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRLQK ++ DL K+TVD + N+D S EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A IDN DID++ LM ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++I+VTEIPY VNKA +++ IA+L EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ ++++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEIQNKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DE--RVVSVERIRESEIV 903 D + +++++ G IR+ V ++RI RAT+GV + + K DE V V E +I+ Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEEDII 821 Query: 904 DEAEST 909 E + T Sbjct: 822 AEEDDT 827 >gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] Length = 853 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/886 (41%), Positives = 544/886 (61%), Gaps = 84/886 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++ I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI Sbjct: 41 NIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTHDKPFKKSARI 100 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+GKYHPHG++++Y+A+ R+AQD+++R LL++G GNFGSVDGD AA RYTE R+ K Sbjct: 101 VGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMRYTEARMAK 160 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 LL D+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNL E Sbjct: 161 ITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGIAVGMATNIPPHNLSE 220 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 + DG VA+IDN +I +D L+ I+GPDFPTG +I G+ GI AY TGRG I + G IE Sbjct: 221 ICDGIVALIDNREISVDELINYIKGPDFPTGGIINGKQGIYEAYRTGRGKIKVAGKVKIE 280 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + +E I+VTE+PYQVNKA ++EKIAELVR K++ I+DLRDESDR+G R+VIELK+G Sbjct: 281 TSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRDESDREGIRIVIELKKG 340 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +++ILN LY++T LQ+ F + M+AL P L IL+ ++ R V+ RR ++ L Sbjct: 341 EESELILNSLYKFTDLQNTFGIIMLALVNNAPRVLNLKQILENYLEHRYNVITRRVQFEL 400 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 NKA +RAH+L G IA+ N+DEV+RIIR S + AR +L+ Sbjct: 401 NKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLI------------------- 441 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 + SE+Q +AIL++RL RLTGL RD I E L + I+E IL+ S+ Sbjct: 442 -------ASFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKK 494 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 IIK E++ +K++ RRT I E +++ ED I ED+VVT++ GYVKR + Y Sbjct: 495 YRIIKDEVIKLKEDFGDKRRTEIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYH 554 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +QRRGG G + ++D + D++I ++L F++ G V+ KV+ +P QARGK Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + N++ L++ ER++T++ E E + F TK G V++ L+ F IN++G A+ Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDK---AIFFITKDGVVKKTDLTLFANINKTGIRALT 671 Query: 678 LDSRDEI--LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L DE+ + + +++++I + T+ G +RF +RV GR + GV+GI+L D V Sbjct: 672 LRDEDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVM-GRTAAGVKGITLRDKDYV 730 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ I I+ E+ E Sbjct: 731 VAAVI--------------------------------------------INPEKISE--- 743 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854 E ++T++E+G+GKRT+ ++++ +R GKGI KINE G +V V V+D +I+ Sbjct: 744 -ELSVMTITEEGYGKRTALSEYKVQSRGGKGIINL---KINEKTGKIVDVKIVDDKTEIM 799 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L++ +GTLIR V+ + + RAT GV I +E+V S +I E+ Sbjct: 800 LITSEGTLIRTKVDTVSVIGRATSGVRIMKVRNEEKVASAVKIAEN 845 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++T++EKG+ KRTS + R G G+ AT+ E + ++ + Sbjct: 526 IEDLIKDEDVVVTLTEKGYVKRTSIDTYHSQRRGGIGVNATNTV---EDDVIKDMYIAKN 582 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESE 901 D +++ + KG + + V EI A + +G +I ++DERV +V R+RE E Sbjct: 583 LDTLLIFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVREFE 637 >gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008] gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008] Length = 822 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/903 (42%), Positives = 543/903 (60%), Gaps = 85/903 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ S + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILGSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ E ++ + T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV T DIL+ TKLG +RF +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ ++ N Sbjct: 692 GIKLNAGDVVVGAGVL------------------------------------------NT 709 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E Q + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 710 DESEAQ--------VFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I +EI + Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEE 819 Query: 905 EAE 907 E E Sbjct: 820 EVE 822 >gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1058] Length = 826 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1087] Length = 826 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+ IIR S A+ ELM + Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GDQV+ ++ D Sbjct: 700 EGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKARGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] Length = 815 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/898 (41%), Positives = 554/898 (61%), Gaps = 88/898 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ K+TVDF NYD S +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM R Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------YELSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL +K + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQRRGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ + + Y+ F T++G V+R +++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAEHDDHS--YLFFTTRYGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ TK+G VRF + +R GR + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNM-GRAATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ +++ D +E Sbjct: 693 TNDYVVGASVI-------------------------SDNQE------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKG++ ++++ N G L + VN + Sbjct: 709 ---------VLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKN--GPLAGLMAVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDE 905 + ++++++ G +IR V I RAT GV + K ++V SV E E+ +E Sbjct: 758 EDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVNEE 815 >gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] Length = 848 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/897 (41%), Positives = 550/897 (61%), Gaps = 86/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNPDI D LME I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNK ++E IA+LV+E +I I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILN+L++ T+LQS FSVN +AL G +P +L +K FV R +V +RR ++ Sbjct: 311 RDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRHDVTIRRARF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L L A N+DEVV +IR S P A++ L +R Sbjct: 371 DLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G D E+Q++AI+++RL++LTGL D + E L IK+ +IL + Sbjct: 416 -----FGFD------ELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R ++K EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 465 RCKEVMKAELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G RD+DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FKEQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+LSL+ G+ + + ++E ++ +VVFATK G V++ L + + +G Sbjct: 585 RAIQNMLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ ++ DE++ V +N++++ + G+ RF S IR GR S GVRG+ L + Sbjct: 645 IAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSM-GRVSTGVRGMRLDEDG 703 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M +V ND E Sbjct: 704 QDEVVGMIVV-----------------------------------NDPVNE--------- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LVA+ V D + Sbjct: 720 -------TVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNIT--DKTGRLVAIKNVTDAN 770 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDEAE 907 +++++ G +IR+ V E R+ RAT+GV + + AK V+ SV ++ SE+ + E Sbjct: 771 DLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEMESQVE 827 >gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] Length = 825 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/895 (43%), Positives = 550/895 (61%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV Y K A Sbjct: 12 IQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 72 RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEARM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +AA +L D+ KDTVDF NYD + QEP +L +R PN+L+NG GIAVGMATNIP H Sbjct: 132 TQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPPHRT 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D V +IDNP LD +++ + GPDFPTG +I G++GI+ AY +GRG I IR +H Sbjct: 192 DEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIYGKSGIREAYESGRGRIKIRAKTH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEKT ++ IV+ EIPYQVNKA ++E+IAEL +EK I IA++RDESDR+G RVVIELK Sbjct: 252 IEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVIELK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ T ++S F + ++A+ +P+ FTL+ +L F++ R+ VV+RRT + Sbjct: 311 REAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKVFTLLELLDLFLSHRKSVVIRRTIF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ N+D +V +IR S +P+ A+ L+ + Sbjct: 371 ELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQ--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLTGL RD I NE +L EI+ IL S S Sbjct: 416 -----------FSLSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSES 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L GIIK+ELL +K++ T R T I E ++ ED I E +VVT+SH GYVKRVP+ Sbjct: 465 LLNGIIKEELLEIKEKFSTKRLTTIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVPVRT 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ D+DF+ F+ TH ++LF + G +Y KV+++P S A G Sbjct: 525 YEKQNRGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIG 584 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+++L E+I + + S N + F TK+G ++R LS+F I G A Sbjct: 585 KAVVNLINLAPDEKIMATITTKDFNS---NKSLAFFTKNGIIKRTNLSEFKNIRSVGVRA 641 Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733 + LD D +++ + + + +IL+ T G CVRF + +R GR + GV I D Sbjct: 642 INLDENDALVTAKIISSDIKEILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKMPKD 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI +V + + EE Sbjct: 701 YVIGATVV------------------------ASENEE---------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 IL+VSEKG GKRT ++RI+NR GKG+ A ++ + G LV + V++N + Sbjct: 715 ------ILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTP--KTGKLVGIVNVDENMDL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907 ++++ G +IRV + IR A RAT GV+I + D++VVS+ R +E E DE E Sbjct: 767 MVLTSSGKMIRVDMQSIRKAGRATSGVIIVNV-DDDKVVSIARCPKEEEQDDENE 820 >gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK150] Length = 826 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] Length = 842 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/880 (40%), Positives = 541/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A ++LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W] gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II] Length = 873 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E E+ ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I LK DS V Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 >gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang] gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang] Length = 873 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E E+ ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I LK DS V Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 >gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] Length = 844 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/890 (41%), Positives = 542/890 (60%), Gaps = 90/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R +L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID+ + ++ +MEII+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R VS+IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S R+G RV Sbjct: 249 RAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +V+LNQLY++T LQ F V M+AL +P+ +L+ IL ++ +E+VV Sbjct: 309 CIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMSLLEILNHYLKHQEDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S + A+ ELM R +N Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSR-FN------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q++AI+++RL LTGL R+ + E L +I E I Sbjct: 421 ------------------LSDAQSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L + ++ RRT I D+ ED I RED+V+T++ +GY+KR Sbjct: 463 LADRKLLLGVIKKEILVISEKYGDDRRTAIGFDEYDISTEDLIPREDVVITMTKMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ DED+V +LF+ +TH ++FF++ G Y+ K + +P Sbjct: 523 MSNDTFKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A+INIL L E+IT ++P + + Y+ ATK G V++ + D+ + + Sbjct: 583 RTSRGTAIINILQLQPDEKITAMIPIKDFKEGD---YLFMATKKGLVKKTPILDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E D++L T+ GQC+RF S +R GR S+GVRG++L+ Sbjct: 640 TGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRS-TGRTSMGVRGMNLS 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V++M + DA +E Sbjct: 699 DRDEVVAMQL----DAQGEE---------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRT +F NR GKG++ +++ + G +V V + Sbjct: 715 ---------LLIVSEKGMGKRTRMEEFTAQNRGGKGVKCYKITE--KTGNVVGAKAVGPD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D+I++++ G +IR+ I + R T GV + + + E V S+ ++R + Sbjct: 764 DEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIAKVRRA 813 >gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 873 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 86/900 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E E+ ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I LK DS V Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 >gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1] gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22] gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1] gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22] Length = 858 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442] gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442] Length = 916 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/920 (41%), Positives = 557/920 (60%), Gaps = 42/920 (4%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+D ++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI---VLHADADYDERICYMKHMSAQR 762 +RF N + + D I I + AD + + KH + Sbjct: 715 IRF-----------NEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKH-GVRP 762 Query: 763 RLISGDTEEITSLKNDSSVEGNIS-EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L D + I+ +E L+ +LT + G+GKRT D+ N Sbjct: 763 SGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQ---VLTATANGYGKRTPIADYSRKN 819 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + G+G A + + N G LVA V + D ++L++ G LIR V +IR RA GV Sbjct: 820 KGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVK 877 Query: 882 IFSTAKDERVVSVERIRESE 901 + + + E +VS+ER+ E E Sbjct: 878 LINLDEGETLVSLERVAEDE 897 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGET-DDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES ++ V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSDASVI 906 >gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191] gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191] Length = 840 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/882 (41%), Positives = 537/882 (60%), Gaps = 82/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S I +EM+ SY+ YA++VI+GRA+PD+RDGLKP+HRR+L+GM +MG+++NK + K A Sbjct: 15 IKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLKYNKSFKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD+L R+AQD+SLR L++GQGNFGSVDGD AA RYTE RL Sbjct: 75 RVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAAAMRYTEVRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A +L+D+ K+TV F NYDGS QEP VL A+ PN+LVNG GIAVGMATNIPTHNL Sbjct: 135 ERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGMATNIPTHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D + VI NP + LM II+GPDFPTGA+I GR GI + + TG+GS+ ++ + Sbjct: 195 SEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIICGRKGIFDYFETGKGSVKVQARAE 254 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G R IVVTEIPYQVNK ++E IA LV++K++ DIAD+RDESDR+G R+VIE+ Sbjct: 255 IEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESDRRGMRLVIEV 314 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A V+LN LY++T LQ+ FSVNM+A+ +P + ++K +V R+EVV RT+ Sbjct: 315 KRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGRPRILPIKEVMKCYVKHRKEVVTARTR 374 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA+ R H+L GL IA+ANLD+V++IIR + +P A+ L++ Sbjct: 375 FDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIRE-------------- 420 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q++AIL++RL +LT L I E L I E IL Sbjct: 421 ------------FALSEPQSQAILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDP 468 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++L II EL +K + T R+T I L DM ED I ED+V+T+S+ GY KR+PL Sbjct: 469 QKVLAIIVDELKGLKKDYGTERKTEISNTELSDMTMEDLIEEEDVVITLSNDGYAKRIPL 528 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGGKG G ++EDF+ LF+ STH ++L F++ G V+ + + +P G+ + Sbjct: 529 DTYRTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLS 588 Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +GKA++N+L ++ E+IT+ + + D + Y+ T+ G ++R +L DF I +SG Sbjct: 589 KGKAIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSG 648 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ D + SV+ ++D+++ T+ G+ +RF IR GR + GVRGI L K Sbjct: 649 IIAIGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAM-GRQAKGVRGIRLGKD 707 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M L D Sbjct: 708 DIVVGMEHALKDAPGPD------------------------------------------- 724 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L+V E G+GKRT ++R NR G G ++ N G +V + V+++ Sbjct: 725 -------VLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERN--GKVVGIKLVDESKD 775 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++++ G +R+ EIR R +GV + A+ +++ + Sbjct: 776 LMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARI 817 >gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] Length = 824 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/898 (42%), Positives = 557/898 (62%), Gaps = 94/898 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCARI Sbjct: 12 IDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+++IY AL MAQDWS+R L++G GNFGSVDGD AA RYTE RL K Sbjct: 72 GDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HN+ EV Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNIKEV 191 Query: 199 VDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 +D V +IDN D +D ++ II+GPDFPTGA ILG GIK AY TGRG I +R V+ Sbjct: 192 IDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTGRGKIKVRAVT 251 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE S + +IVV+E+PY VNKA ++EKIAELV++KRI I DLRDES+R+G RVVIEL Sbjct: 252 EIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMRVVIEL 311 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ +A++ILN+LY++T LQ F VNM+AL +P+ ++ +L+ ++A +E+VV RRTK Sbjct: 312 RKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYLAHQEDVVTRRTK 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA++RAH+L GL IA+ N+DE+++IIR S N A+ EL++R Sbjct: 372 YELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR-------------- 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+VQ +AI+++RL LTGL R+ + +E N L +I+ IL+ Sbjct: 418 ------------FGLSDVQAQAIVDMRLRALTGLERERLESEYNELLAKIEYFEGILADE 465 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +LL +IK+E+L V+D+ RRT ++ DMEDED I +ED+++ ++ LGY+KR+ Sbjct: 466 KKLLTLIKEEILVVEDKYKDDRRTGFMQ-DDDMEDEDLIQKEDIIIAMTKLGYIKRMSPD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGGKG G+ D+DF+ D+ + +TH + FF++ G VY K +++P S AR Sbjct: 525 NFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTAR 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G A++N+L L E+I+ I+P E+ N+ Y+ TK+G +++ +++ F I ++G Sbjct: 585 GIAIVNLLQLQPDEKISAIIP---SEAKSNDGYLFMVTKNGTIKKCQINLFDNIRKNGLA 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ ++D+++ +K G C+R IR GR + GVRG+ L GD+ Sbjct: 642 AINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRA-VGRGATGVRGMRLNTGDE 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M +L Sbjct: 701 VIGM-----------------------------------------------------QLA 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853 + +++L VSE G+GKRT +F++ NR GKGI K NE G LV VN++ +I Sbjct: 708 SQGEYLLLVSEYGYGKRTKISEFKVQNRGGKGIIC---YKDNEKTGKLVGAKLVNEDREI 764 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAEST 909 +L++ +G +IR+ V+ I I R GV + + + D ++ S+ +IRE + + E + Sbjct: 765 LLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREEKNTESDEES 822 >gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] Length = 811 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/888 (41%), Positives = 556/888 (62%), Gaps = 92/888 (10%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 TSV+I +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q+G+ NK + K AR Sbjct: 10 TSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNKSHKKSAR 69 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I GEV+GKYHPHG+ A+YD + RMAQ++S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 70 IVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARMS 129 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K + LL D+ KDTVDF+PN+D + +EP VL +R PN+L+NG GIAVGM+TNIP HNL Sbjct: 130 KLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTNIPPHNLT 189 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV+DG +A+IDNPD+D+ LM+II+GPDFPTG +I+GR GIK A+ TG+G + +R + I Sbjct: 190 EVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKVKVRAKTEI 249 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ +RE+I+V E+PYQVNKA ++EK A LVR+ + IADLRDESDR G R+ I+L++ Sbjct: 250 EEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGMRISIDLRK 309 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A+ ++LN+L+++T LQ F + M+AL +PE +L +L+ ++ ++EVV RRTKY Sbjct: 310 SANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEVVTRRTKYN 369 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L+KA+ R H+L GL A N+D VV+ IR S + A+ L+ SD Sbjct: 370 LDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLI------SDFD-------- 415 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 L++ Q +AIL +RL RLTGL + I +E L EI+ IL+S + Sbjct: 416 ------------LTKKQAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEK 463 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 LL IIK E+L +K++ RRT+IV+ +D+ ED I E++++T++ Y+KR+PL Y Sbjct: 464 LLDIIKDEILVLKEKYKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+Q RGG+G G+ +D V L+ STH +LFF++ G Y+ K +++P S QA+G Sbjct: 524 RSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGT 583 Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 A+IN+L + ER+T ++P F D+ Y++ T+ G V+R +L +F N +G Sbjct: 584 AIINLLDMEPNERVTAVIPVEDFDLDD------YLLMVTEQGIVKRTELQEF-NTNYTGL 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V T + DI+L T+LG +RF S +R GR + GV+GI Sbjct: 637 IALDLQQNDELIEVRLTTGQEDIILGTELGLAIRFNESEVRSM-GRTARGVKGID----- 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +++Q +++ D +K+ Sbjct: 691 ------------------------LASQDKVVGADI-----IKDGGK------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++KG+GK+T +R +R+GKG+ + + ++ G L A+ V ++D++ Sbjct: 709 ------LLVVTDKGYGKQTPLNKYRRQSRAGKGLLT--IKRTDKNGKLTALKVVEEDDEV 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +L+S +G +IR+ V+EI SR T+GV + S + +RVVS+ I + + Sbjct: 761 MLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDRVVSLAHIEDED 808 Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust. Identities = 56/254 (22%), Positives = 120/254 (47%), Gaps = 15/254 (5%) Query: 657 VRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 ++R L + +R G+ I + D++D + + T + + +L T G+ R I Sbjct: 515 IKRIPLDTYRSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQI- 573 Query: 715 VFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRR--LISGDTE 770 A R + G I+L + ++ ++ A++ D D D+ + + +R L +T Sbjct: 574 PDASRQAKGTAIINLLDMEPNERVT-AVIPVEDFDLDDYLLMVTEQGIVKRTELQEFNTN 632 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + D + E R L ++ I+ +E G R + + R R+ +G++ Sbjct: 633 YTGLIALDLQQNDELIEVR---LTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGI 689 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV-IFSTAKDE 889 D++ +++ V + D ++++V+DKG + P+N+ R SRA KG++ I T K+ Sbjct: 690 DLASQDKV---VGADIIKDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNG 746 Query: 890 RVVSVERIRESEIV 903 ++ +++ + E + V Sbjct: 747 KLTALKVVEEDDEV 760 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 106/232 (45%), Gaps = 23/232 (9%) Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 V ++ +ED D +D ++ V+ G VKR L + G + ++ D + ++ Sbjct: 597 VTAVIPVEDFDL---DDYLLMVTEQGIVKRTELQEFNTNY---TGLIALDLQQNDELIEV 650 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ--GERITTIMPFPE 638 + + ++ + LG + + ARG I++ S ++ G I Sbjct: 651 RLTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKVVGADII------- 703 Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQEND 695 L VV T G ++ L+ + + +R+GK + + D ++ +++ ++++ Sbjct: 704 --KDGGKLLVV--TDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTALKVVEEDDE 759 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++L +K G +R +S I RN+ GV +SL +GD+V+S+A + D + Sbjct: 760 VMLISKEGIVIRMSVSEISS-TSRNTQGVNLMSLVEGDRVVSLAHIEDEDGN 810 >gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 848 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/896 (41%), Positives = 556/896 (62%), Gaps = 86/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ + + K A Sbjct: 7 LISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 67 RIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEARM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK + +L D+ KDTVD + N+D + +EP VL R P +L+NG GIAVGMATN+P HNL Sbjct: 127 QKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG A IDN D+ +D LME ++ PDFPTG I G G++ A+ TGRG +V+R + Sbjct: 187 SEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRAKAT 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G RE I+VTEIPYQVNKA M++K A+++ +K+I I+ +RDESDR G R+V +K Sbjct: 247 FEEVKG-RECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVYVIK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++LN+LY+YT+LQS FSVN +AL +PE L ++ FV R VVVRRT+Y Sbjct: 306 RDAIPNIVLNKLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHVVVVRRTEY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA N+DEV+ IIR S N + AR+ L++R Sbjct: 366 ELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIER--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AI+E+RL +LTGL +D +R+E + I++ DIL+ + Sbjct: 411 -----------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R + II++EL +KD+ RR+ I D+ D I + +V+T+S+ GY+KR L+ Sbjct: 460 RRMSIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG G R+EDF+ LF+ + H +LFF+ G + +V+ +P GS ++G Sbjct: 520 YKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N++++ Q + + + + DE NN +++ ATK G V++ L + + +G Sbjct: 580 RAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTNGI 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + DE+LSV+ T E+ ++L K G+ +RF S R GRN+ GVRGI+LA Sbjct: 640 NAITIKDDDELLSVKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITLANDQ 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+VI M V ND VE N Sbjct: 699 DEVIGMVSV-----------------------------------ND--VESN-------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 IL VSEKG+GKR+S D+RI+NR GKG++ V++ + G LVA+ V D D Sbjct: 714 -------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVAIKNVTDADD 764 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAE 907 +++++ G IR+ V +R+ RAT+GV + + ++ + +V +++ + E +DE + Sbjct: 765 LMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAIDEED 820 >gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] Length = 812 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/881 (41%), Positives = 548/881 (62%), Gaps = 96/881 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G RVVIE+K+G Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I NE + IKE ++LS S++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +KD+ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLELKDKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERIT---TIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE+++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVSDTIVIKEFLPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K+ D+I+ V E T+E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800 >gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae] Length = 876 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/855 (43%), Positives = 545/855 (63%), Gaps = 35/855 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G +A +++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + I + Sbjct: 188 TEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYICARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 L KARDRA +L L+IA+AN+D ++ +IR +P P A+ L+ RSW+ ++ +++ Sbjct: 368 LALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLEAG 427 Query: 435 DDSSYT------IG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 DD++ G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 DDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAEL 487 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 L IL S RL+ +I++EL V+++ RRT I +D+ ED I +ED+VVT+SH GY Sbjct: 488 LHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLITQEDVVVTLSHEGY 547 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VK P++ Y AQRRGGKG+S +++EDF+ L + +TH ++L FSS G +Y KV+++P Sbjct: 548 VKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQVP 607 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG+ ++N+L L ER T I+P E E N V AT G V++ +F + Sbjct: 608 EASRGARGRPIVNLLPLEANERYTAILPVREYEEGVN---VFMATASGTVKKTPADEFSR 664 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G IA+ L+ DE++ V+ + +++++L + G+ VRF +R GR + GVRGI Sbjct: 665 PRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAM-GRTATGVRGI 723 Query: 728 SLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK---N 777 LA D+V+S+ I+ + Y +R ++ + R T+ + S+K Sbjct: 724 KLAGEDKVVSLIVPRGEGRILTATENGYRKRTAVAEYPTKSRA-----TQGVISIKVTER 778 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 + SV G + + C + I+ +++ G R + I R+ +G+ ++ Sbjct: 779 NGSVVGAVQVDDCDQ-------IMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTAEDEN 831 Query: 838 IGALVAVF-PVNDND 851 + AL V PV+D + Sbjct: 832 VVALQRVAEPVDDEE 846 >gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] Length = 795 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/869 (42%), Positives = 539/869 (62%), Gaps = 86/869 (9%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ +K Y K ARI GEV+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+ + RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ K + L+ D+ K+T+D+ Sbjct: 61 YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 + NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP H LGEV+DG +A+ NPDI + Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180 Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273 LME I GPDFPT +ILGR+GI+ AY TGRGSI++R IE+ ++ I+VTE+PY Sbjct: 181 AELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELPY 240 Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 QVNKA ++EKIAELVR+K+I I DLRDESDR G R+V+E++R A+A+V+LN LY++T+L Sbjct: 241 QVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTAL 300 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q+ F +NM++L +P+ L L ++ ++ V+ RRT Y L KA RAH+L GL IA Sbjct: 301 QTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIA 360 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 + +LDEV+ +IR S + AR+ LM+R LSE Q Sbjct: 361 LDHLDEVITLIRSSKTADIARQGLMER--------------------------FGLSEKQ 394 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 +AIL++RL RLTGL R+ I E L I E IL+ ++L II++EL VK+ + Sbjct: 395 AQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFN 454 Query: 514 TPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 RRT I + G+ +EDED I +++ +T++H GY+KR+P S Y+ Q RGG+G G+ Sbjct: 455 DKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTN 514 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 D+DFV L STH +LFF++ G VY+ K + +P S A+G +IN+L +++GE + Sbjct: 515 DDDFVEQLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNA 574 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692 I+P E ++ Y+ F TK+G +R LS F I +G IA+ L DE++SV + Sbjct: 575 IIPIRE---FGDDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSG 631 Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 + DI++ T G +RF +R GRN+ GV+ I+L Sbjct: 632 DKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKAITL----------------------- 667 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 GD +++ ++ I EE + +L V++ G+GKRT Sbjct: 668 --------------GDEDQVVGME--------IVEE--------DMNVLIVTKNGYGKRT 697 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 ++R+ +R GKG++ +++ N G LVAV V + I+L++ G +IR+PV++I Sbjct: 698 PIEEYRLQSRGGKGLKTCNITDKN--GKLVAVKSVTGEEDIMLITAAGIIIRMPVDQISQ 755 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901 R T+GV + ++ V +V + ++ E Sbjct: 756 MGRNTQGVRLIRLENEQEVATVAKAQKDE 784 >gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] Length = 814 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/886 (40%), Positives = 553/886 (62%), Gaps = 86/886 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +G++ NK Sbjct: 3 ENQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+GKDTVDF PN+D EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + +P+I +D L+EII GPDFPTGA+ILG++GIK AY TGRG I R Sbjct: 183 PHNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V+ IE +RE+I++TEIPYQVNKA ++EKIA+LV+EKR+ I+D+RDESDR+G R+V Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+KR ++ +++LN LY+YT L++ F + +AL +P+ L +++ +V ++EVV R Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KARDR H++ GL IA+ ++DE+++IIR S++ IK + Sbjct: 363 RTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIR--------------SSYDNDQIKKIF 408 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 Y L+EVQ++AIL+++L RL+GL + + E + L I L IL Sbjct: 409 -------Y-----DKFKLTEVQSQAILDMQLKRLSGLEIEKLNAENDELARMIDYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S L+ +I E+ +K++ RRT+IV ++E + RED+++T++ GY+KR+ Sbjct: 457 NSEETLINLIIDEMTEIKEKYADDRRTQIVPDEGEIEISELFEREDILITLTKDGYIKRL 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+S+G V+ + + +P S Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RG+A+INIL+L GERIT +M + N +V TK+G +++ +F I ++ Sbjct: 577 TSRGQAIINILNLESGERITEMMTLSD---LHKNSQIVLQTKNGTIKKTDAENFANIRKN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D+++SV +E ++L++TK G ++F +R GR + GV+ I L K Sbjct: 634 GIIAISLQENDKLISVRQIDKEEELLISTKNGMTIQFNSKDLRSM-GRIAQGVKAIKLDK 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+SM I Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K +E ++L V+E +GK+TS +F+ NR GKG++ V++ + G +V PV+ ++ Sbjct: 702 --KGEETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKVVDTLPVDLDN 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896 I++VS G +IR+ V +I I R T GV + + D +R+VSV + Sbjct: 758 DIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTK 803 Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E EL +E ++T+++ G+ KR +++ NR GKGI A + + + I ++ Sbjct: 491 EIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIIT--- 547 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 N +++++ + G + + I ASR ++G I + E S ERI E Sbjct: 548 TNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLE---SGERITE 597 >gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] Length = 828 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/896 (41%), Positives = 548/896 (61%), Gaps = 91/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+ NK Y K A Sbjct: 10 ILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+ MGK+HPHG+++IYDA+ R+AQD+S R LI+G GNFGSVDGD AA RYTE R+ Sbjct: 70 RLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++L D+ KDTVDF+PNYD QEP V+ A++PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G +A IDNP+I++ LM I+GPDFPTGA I+G GI +AY TG+GS R +H Sbjct: 190 TEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAKAH 249 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ + +I+VTEIPY VNKA ++EKIAELVREKRI I DLRDESDR G R+V+EL Sbjct: 250 VEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R + V+LNQLY++T ++ F VN++AL +P+ L I+ F+ +++V+VRRT+ Sbjct: 310 RRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA AH+L GL IA+ +DEV+ IIR S + ++A+ LM R Sbjct: 370 FELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFG------------ 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q++AI+++RL RLTGL R+ I + + I +L+S Sbjct: 418 --------------LSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L IIKQEL VK++ RRT I M ED I E++V+T+SH GY+KR+PL+ Sbjct: 464 QMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLN 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y++QRRGGKG G+ R+EDFV +F STH +LFF++ G VY+ K +P + Sbjct: 524 TYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGK 583 Query: 615 GKALINILSLNQG-ERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672 G AL+N+LS+N E+IT ++ +N + ++ AT+ G V++ L ++ + G Sbjct: 584 GTALVNLLSINPSEEKITAVLSI----RKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDG 639 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V + I++ TK G C+RF S +R GR + GV+GISL K Sbjct: 640 LIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKGISLEKE 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+SM ++ +A+ Sbjct: 699 DLVVSMDVIYEEEAE--------------------------------------------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDND 851 IL+++E GF KRTS ++R+ R GKGI AT + +K ++ L + P ND Sbjct: 714 -------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPEND-- 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++++++ G +IR V+ I R+ +GV+ T + +VV++ + E +E++ Sbjct: 765 -MMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTG-ESKVVAIAVVDNKEDAEESD 818 >gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20] gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20] Length = 842 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/880 (40%), Positives = 540/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG+ ++Y AL RMAQ W++R +L++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DID++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+L EK+I IA+ DESDR+G R+V Sbjct: 243 ARAEIE-TGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A ++LN+LY+ T LQ+ F VN VAL +P L ++K FV R +VV+R Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV++IIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q+RAI+E+RL +LTGL +D + E + +I +IL Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK EL+ VK++ RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] Length = 822 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/900 (42%), Positives = 554/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVMGRSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L V+EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 708 -------QEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818 >gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12] gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 845 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + + +I IL Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M IC I L+ +S Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D++ +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] Length = 829 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/889 (41%), Positives = 546/889 (61%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ ++ I +V +T M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE ++ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++DNPD+ LM++I GPDFPTG +++GR GI AY TG+G Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +I++R + IE RE+IVVTE+PY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD I E L +I + Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I EG + +EDED I ++D+++T++H Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ ++ Q RGG+G G+ ++D+DF+ L STH +LFF++LG VY +K + Sbjct: 517 GYIKRMSADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE+I ++ PE ++ Y+ F TK G V+R K+S+F Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPE---GADDNYLFFVTKMGTVKRTKVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG IA+ L DE+ +V T + +I++ T LG V F +R GR + GVR Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L D V+ I L+ DS V Sbjct: 693 GINLRDNDYVVGSDI----------------------------------LEPDSEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +SEKG+GKRT++ ++ + R GKGI+ ++++ N G L V Sbjct: 715 ---------------LVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VN ++ I+L++ G +IR V+++ RAT GV + +V S+ Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASI 806 >gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334] gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334] Length = 873 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 550/900 (61%), Gaps = 86/900 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ +E IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 2 DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVGM T Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E + ++DNPD LM+ + GPDFPTG V++G++GI++AY TGRG+I Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+RG ++ RE+IV+TEIPY VNKA M+E+IA+LV EK+I I LRDESDR G Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +E V Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRT++ L KA R H+L GL IA+ ++DE++ IIR S + A+ LM + Sbjct: 362 IRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q++AIL++RL RLTGL R+ + +E + I + Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ + RRT ++ G +L +EDED I +ED+V+T+SH GY Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ S ++AQ RGG+G G+ + D+DFV L STH +LFF++ G VY+ K + +P Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L + GE+I T++ E E+ ++ Y+ F T+ G V+R + +F Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHEGEN--DDRYLFFVTQKGVVKRTPVKEFAN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G IA+ L DE+ +V + +++IL+ T LG V F +R GR++ GVRGI Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ I LK DS V Sbjct: 693 RLREHDYVVGSDI----------------------------------LKPDSEV------ 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +SEKG+GKRT++ ++ I R GKGI+ +++ N G L V V Sbjct: 713 -------------FVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEA 906 + + I++++D G +IR + + RAT GV + D +V ++ ++ ES+ D+ Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817 >gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] Length = 822 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/901 (41%), Positives = 550/901 (61%), Gaps = 85/901 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++GI +T+EM+ S+++YA++VI+ RA+PD+RDGLKPV RRI+ GM ++G +K Y Sbjct: 2 EQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R ++++G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + L+ D+ KDTV+F PNYDG EP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGEV+D +AV NPDI + LME I+GPDFPTGA ILG++ IK AY TG G I++ Sbjct: 182 PHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYILGKSAIKKAYETGNGLIIM 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I G ++ I+V EIPY VNKA ++EK+AE V+EKRI I ++RDES+R+G R+ Sbjct: 242 RAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ +VILNQL++ TSLQ+ F VN +AL +P+ L ++ ++ +EEV+ Sbjct: 302 VIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNEPQTLNLKQMITYYLDHQEEVIK 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA DRAH+L GL A+ +D ++ +IR S E ++ LM Sbjct: 362 RRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +SE Q +AI E++L RL GL R+ I NELN L I + DI Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +R R+L II+ ELL +KD+ RRT I++G D+EDED I ED++++++ GYVKR Sbjct: 456 LENRERILAIIEAELLQLKDKFADKRRTEIIQGTFDLEDEDLIPVEDIIISLTTNGYVKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ Y+ Q RGG+G G+ ++D V L +STH +LFF++ G VY+ K + +P Sbjct: 516 MPVDTYKTQNRGGRGIKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFG 575 Query: 611 PQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G ++N+L+L++ E + +++ ED Y+ F T +G V++ + +F I Sbjct: 576 RTAKGLPVVNLLNLDKDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +SGKIA+ L D+++SV+ T IL+ G+ +RF S +R GR + GV Sbjct: 636 QSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKM-GRTASGV----- 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 R I+ D + + D EG Sbjct: 690 ---------------------------------RGINVDGGHVIGMTTDQ--EG------ 708 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 QFI+ +SE G+GK + D+R S+R GKG++ + + + G LVA+ VN Sbjct: 709 --------QFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTA--KTGQLVALRAVNG 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 ++ +++++ +G +IR+P+++++ A R T+GV + A+ V SVE + ++E +E S Sbjct: 759 DEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSD 818 Query: 910 E 910 E Sbjct: 819 E 819 >gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] Length = 822 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/900 (42%), Positives = 555/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ LDEV+ IIR S A+ +LM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 EKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASENN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRTS+ ++ R GKGI+ ++++ N G L + V+ + Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ +E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEEVEQASEDQE 818 >gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK160] Length = 826 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] Length = 847 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/889 (40%), Positives = 545/889 (61%), Gaps = 86/889 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCAR+ Sbjct: 3 INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARVV 62 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD AA RYTECRL K Sbjct: 63 GEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 ++DD+ KDTVD N+D + +EP V+ + PN+LVNGG GIAVGMATNIPTHNLGEV Sbjct: 123 GEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGEV 182 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DGC A IDNP+I D LME I PDFPTGA I G G+K+AY TGRG +V+R + IE Sbjct: 183 IDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAEIE- 241 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + ++IVVTEIPY VNK ++E IA+LV+E ++ I+++ DE+ RQG R+V+++KR A Sbjct: 242 SDESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKRDA 301 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+VILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RR ++ L Sbjct: 302 NANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQFDLK 361 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA++RAH+L L A N+DEVVRIIR S P A++ L +R Sbjct: 362 KAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKR------------------ 403 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 E+Q++AI+++RL++LTGL D + E L IK+ +IL++ R Sbjct: 404 --------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCK 455 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ ++ Sbjct: 456 EVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKE 515 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++G+A+ Sbjct: 516 QARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAI 575 Query: 619 INILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 N+LSL G+ + + +D+ ++ YVVFATK G V++ L + + +G IA+ Sbjct: 576 QNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAI 635 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQ 734 ++ DE++ V N++++ + G+ RF S IR GR S GVRG+ L D+ Sbjct: 636 NINEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDDDGQDE 694 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ M +V ND E Sbjct: 695 VVGMIVV-----------------------------------NDPVKE------------ 707 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++ VSE+G+GKR+ D+R++NR GKG++ +++ ++ G LVA+ V D++ ++ Sbjct: 708 ----TVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDLM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEI 902 +++ G +IR+ V E R+ RAT+GV + + AK V+ SV ++ SE+ Sbjct: 762 IINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEM 810 >gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] Length = 807 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/883 (42%), Positives = 537/883 (60%), Gaps = 85/883 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M + +N+ + K AR+ Sbjct: 10 VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YD + RMAQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + Sbjct: 70 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L DL K+TVDF P YDG+ EP+VL + PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 G V+DNP+I L LM +I GPDFPT ILG+ GI +AY+TGRG I IR + +EK Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFILGKQGIIDAYSTGRGIIKIRSRAFVEK 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + ++E+I+V+EIPYQVNK +LEKIA VREK+I I+++RDESDR G R+VIE+KR A Sbjct: 250 FAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A VILNQLY++T ++ F + ++A+ +PE TL G++ F+ R E++VRRT + L Sbjct: 310 YALVILNQLYKFTQMEVSFGIILLAIVNGRPEILTLKGMIDHFIKHRREIIVRRTIFDLK 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL A+ LDEV+ +IR S + + A+ LM Sbjct: 370 KAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLM-------------------- 409 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 SE+Q +AIL++RL RLTGL R+ I E +L +I IL++ S +L Sbjct: 410 ------AEFQFSEIQAQAILDMRLQRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVL 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK+ELL +++ RR+ I++ +++ ED I EDMVVTVSH GY+KR P+S+YRA Sbjct: 464 DIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRA 523 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG +G ++EDFV LF+ S+H LFF++ G VY +KV +P G +RGKA+ Sbjct: 524 QRRGGKGLTGAKPKEEDFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAI 583 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L L +GER+ TI+P + E YVV ATK G V++ +L + G I +K+ Sbjct: 584 VNLLDLKKGERLATILPVRDYEEGK---YVVMATKMGFVKKTELKAYSHPRSVGTIGLKI 640 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+++V + + DI LTTK G+ +RF S +R GR + G GI + G++V+ M Sbjct: 641 RENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSM-GRVAAGNIGIKMETGNEVVGM 699 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + G+ I ++ + + EE Sbjct: 700 ETL-------------------------GEGATILTVTENGFGKRTNREEYP-------- 726 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 T + G G T + S R+G + A +V+ +E+ ++++ Sbjct: 727 ---TQARAGKGVIT----IKTSERNGLVVYAYEVTDQDEL---------------MIITG 764 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G +IR+ +I + R T+GV + + E+VV V +I E + Sbjct: 765 HGKIIRIRAADISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807 >gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] Length = 823 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/890 (42%), Positives = 538/890 (60%), Gaps = 85/890 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ S + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ E ++ + T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV T DIL+ TKLG +RF +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ + L ND S Sbjct: 692 GIKLNAGDVVVGAGV----------------------------------LNNDES----- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E + T+SE+GFGKR + + + R GKG + ++ N+ G +VAV Sbjct: 713 -----------EAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSV 894 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASI 809 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 100/214 (46%), Gaps = 16/214 (7%) Query: 534 VREDM-VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V ED+ + V+ G VKR + YR RR G + + + + D + + + + + +L Sbjct: 609 VHEDVNLFMVTEFGVVKRTAIEEYRNIRRSG--LNAINLDEGDRLISVNVTTGNQDILIG 666 Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + LG + E RL R + + LN G+ + DES V Sbjct: 667 TKLGIAIRFSEHDVRL-----MKRAAHGVRGIKLNAGDVVVGAGVLNNDESEAQ---VFT 718 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVR 707 ++ G +RN + R GK + + ++++VE +++++L ++ G+ +R Sbjct: 719 ISEEGFGKRNDAEAYTLQKRGGKGSKNFKITNKTGDVVAVEVVHNDDEVMLISEQGKIIR 778 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 F ++ I V G+ GV+ +L +GD+V S+A++ Sbjct: 779 FNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVI 812 >gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 857 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/916 (40%), Positives = 561/916 (61%), Gaps = 106/916 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M++SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EVVD V +IDN + ++ +++I++GPDFPTGA+ILGR GI+ AY TGRG I + Sbjct: 189 REVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMILGRRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+PY VNKA ++ KIAELVR+K+I I DL D S R+G R+ Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NG-YKPERFTLIGILKAFVAFRE 366 I+L++ A+A+V+LN LY++T LQ F VNM++L NG +P+ L +L+ ++A +E Sbjct: 309 CIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLEYYLAHQE 368 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRTKY LNKAR+RAH+L GL A+ N+DEV+RIIR S N + A++ELM R Sbjct: 369 DVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMDR------ 422 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L++VQ +AI+++RL LTGL R+ + E L +I++ Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRK 462 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ RS LL +I++E+L++ ++ R+T I + D+ ED I RE+ V+T++ LG Sbjct: 463 YEAILADRSLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTVITMTKLG 522 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ + +R+Q RGG+G G+ ++D++ +L + +TH ++FF++ G VY+ K + + Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEI 582 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P ARG A+IN+L L GE IT ++P + E Y++ ATK+G V++ + ++ Sbjct: 583 PEAGRTARGTAIINLLQLMPGECITAVIPLRKFEDGH---YLMMATKNGLVKKTPIKEYA 639 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ L DE++ V+ + DI+L TK G C+RF + +R GR S+GVRG Sbjct: 640 NVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVR-STGRTSMGVRG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +++ GD+V++M + D Sbjct: 699 MNIDDGDEVVAMQLNSQGDC---------------------------------------- 718 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L VS G GKRTS +F NR GKG++ +++ + G ++ Sbjct: 719 -------------LLIVSANGMGKRTSMGEFTCQNRGGKGVKCYKITE--KTGDVIGARA 763 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------ 900 VN++++++L++ +G +IR+ +I I R T GV + + + V SV ++R+ Sbjct: 764 VNEDNEVMLITTEGIIIRIACADISILGRITSGVKLINLTEGVTVASVAKVRDKEEKDTN 823 Query: 901 ------EIVDEAESTE 910 EI D AE+ E Sbjct: 824 AQQAAVEITDSAETEE 839 >gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2] gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 858 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli] gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli] Length = 859 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/840 (44%), Positives = 539/840 (64%), Gaps = 26/840 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ITS+++ E++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK + K A Sbjct: 9 ITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+AAIYD + RMAQ +S+R +LI+GQGNFGSVDGD A+ RYTE R+ Sbjct: 69 RVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEIRM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL K+TVDF PNYD + P VL R PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D CVA++++ ++ ++ LM I+GPDFPT +I G+ GI AY TGRG + +R Sbjct: 189 AEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIYGKQGIIEAYHTGRGRLFVRARVQ 248 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ ++++I+VTE+PYQVNKA ++EKIAELV+EKRI I LRDESD+ G RVVIE+ Sbjct: 249 IEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVIEV 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG + DV+LN L+ T LQ F +NMVAL +P L ++ F+A R EVV RRT Sbjct: 309 KRGENVDVLLNNLFSQTQLQVTFGINMVALVDGRPVLLNLKQLISEFLAHRREVVTRRTI 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+RAH+L GL IA+AN+D ++ +I+ + +P A+ +L+ + W+ + +++ Sbjct: 369 FELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLTKT 428 Query: 435 DD---SSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 DD Y + D Y LS Q +AIL+LRL RLTGL ++ I E I + LDI Sbjct: 429 DDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLLDI 488 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ RL +I++EL+++K+E PRRT I+ ++ +ED I ED+VVT+SH GYVKR Sbjct: 489 LNQPERLCRVIQEELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSHEGYVKR 548 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 L VY AQRRGG+G+S +++EDF+ L I +TH ++L FSS+G VY KV++LP GS Sbjct: 549 QSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYWLKVYKLPEGS 608 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ +IN+L+L + ERIT ++P + ++ AT G ++ L DF + Sbjct: 609 RIAKGRPIINLLALGENERITAVLPIQNYSAEH---FIFMATMKGTTKKTSLIDFSRPRH 665 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ L D ++ V + D+LL T G+ +RF S +R GR + GVRGI L Sbjct: 666 DGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCM-GRTACGVRGIKLQ 724 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQ------RRLISGDTEEITSLKNDSSVEGN 784 +G +VIS+ I Y + +H + RL S + ++K ++ G Sbjct: 725 EGQRVISLIIA----KPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKT-TARNGQ 779 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + Q L E ++ ++ K RT + R+++R +G+R + ++NE LV + Sbjct: 780 VVAA-VQVLPSDE--VMLITNKATLVRTRVAEIRVASRHSQGVR---LIRLNEGETLVGL 833 Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 68/112 (60%), Gaps = 2/112 (1%) Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILT + G+GK T +D R+++R G G+ A + N G +VA V +D+++L+++ Sbjct: 740 LILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARN--GQVVAAVQVLPSDEVMLITN 797 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 K TL+R V EIR+ASR ++GV + + E +V +ERI E I + +S + Sbjct: 798 KATLVRTRVAEIRVASRHSQGVRLIRLNEGETLVGLERIEEDLITENPDSVD 849 Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E FI + KG K+TS DF S GI A D+ + LV V + ++L Sbjct: 640 EHFIFMATMKGTTKKTSLIDF--SRPRHDGIIAIDLRDHDR---LVGVALTDGQQDVLLF 694 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +D G +IR + +R R GV + +RV+S+ Sbjct: 695 TDAGKVIRFNESNVRCMGRTACGVRGIKLQEGQRVISL 732 >gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK115] Length = 826 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K + Sbjct: 9 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S ++ Y+ F T+HG V+R +++F I + Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ ++ D Sbjct: 700 DGDQVVGAGVIAEGD--------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 E ++T EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 715 ------EVLVIT--EKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V+ + + D AE Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAE 821 >gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] Length = 856 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/904 (39%), Positives = 553/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +KRI I++ DESDR+G R+V Sbjct: 243 AKAEIE-IGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KAR+RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D NN YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] Length = 858 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAGE 825 >gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] Length = 858 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 554/904 (61%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++ C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 AKAEIE-SGQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K+ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] Length = 859 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/880 (40%), Positives = 540/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDNP+I ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE ++IV+TEIPY VNKA +++ IA+LV +K+I I++ DESDR G R+V Sbjct: 243 ARAEIESGQA-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K F+ R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALIHGRPKTLNLRDLIKYFIEHRREVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + ED N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+V+ M IC I L+ +S Sbjct: 695 DNDGQDEVVGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] Length = 846 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/886 (40%), Positives = 550/886 (62%), Gaps = 86/886 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+VI Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G +IN++ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIINLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803 >gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] Length = 848 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/904 (41%), Positives = 554/904 (61%), Gaps = 94/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 IHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN D ++ L+EI++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K+I I DL D S R+G R+ Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNM---VALNG-YKPERFTLIGILKAFVAFRE 366 I+L++ A+A+V+LNQLY++T LQ F V M VA+NG +P+ TL +LK ++A +E Sbjct: 309 CIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKHYLAHQE 368 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRTKY LNKA++RAH+L GL A+ N+DEV+RIIR S + + A++ELM R Sbjct: 369 DVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDR------ 422 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L++VQ +AI+++RL LTGL R+ + E L +I++ Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ R+ LL +I++E+L++ ++ RRT I D+ ED I RE+ V+T++ LG Sbjct: 463 LKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAFDISMEDMIPRENTVITMTKLG 522 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ + +R+Q RGG+G G+ D+D++ +L + +TH V+FF++ G VY+ K + + Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEI 582 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P ARG A+IN+L L GERIT ++P + E Y++ AT+ G V++ + D+ Sbjct: 583 PEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGQ---YLMMATRKGLVKKTPIQDYA 639 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G A+ L DE++ V+ + DI+L TK GQC+RF S +R GR S+GVRG Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRS-TGRVSMGVRG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD+V++M + Y+ +S +N +IS Sbjct: 699 INLLDGDEVVAMQLNTQG--------YYLLVVS----------------ENGMGKRTSIS 734 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E CQ NR GKG++ +++ + G ++ Sbjct: 735 EFTCQ-----------------------------NRGGKGVKCYKITE--KTGNVIGAKA 763 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 VN+ ++I++++ +G +IR+ ++I I R T GV + + + V S ++RE E + Sbjct: 764 VNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVREKEEDKNS 823 Query: 907 ESTE 910 E TE Sbjct: 824 EKTE 827 >gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] Length = 878 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/898 (40%), Positives = 544/898 (60%), Gaps = 94/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + EP V+ R PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 SKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DGC A IDNP+ID + LM+ I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 GEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIYGIQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNK ++E IAELV+E +I I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL-------NGYKPERFTLIGILKAFVAFREEV 368 R A+A VILN+L++ T+LQS FSVN +AL +P+ +L + F+ R EV Sbjct: 311 RDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRECISYFIDHRHEV 370 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 +RRTK+ L KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 371 TIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQANLEKR-------- 422 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L +Q++AI+++RL++LTGL D + E L I E Sbjct: 423 ------------------FELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQ 464 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L + ++K EL +VK + RRTRI+ + ED + +V+TVSHLGY+ Sbjct: 465 SVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFNAEDFYPNDPVVITVSHLGYI 524 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PLS +R Q RGG G G RD+DF ++ + H +++FF+ G Y + +P Sbjct: 525 KRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPE 584 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNVRRNKLSD 664 G ++G+A+ N+L+++ + + + EDE N+ YVVFATK+G V++ L + Sbjct: 585 GDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNGTVKKTNLKE 644 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G IA+ + DE++ V N+++L + G+ VRF AIR GR S GV Sbjct: 645 YSRPRANGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRSM-GRVSTGV 703 Query: 725 RGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 RG+ + +GD V+ M +V +A+ Sbjct: 704 RGMRIDDEGDAVVGMIVVNNAET------------------------------------- 726 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++ VSE+G+GKR+ D+R +NR GKG++ +++ + G LVA Sbjct: 727 --------------ETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITE--KTGRLVA 770 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900 + V D + +++++ G +IR+ V E+R+ RAT+GV + + A K++ + SV ++ S Sbjct: 771 IKNVTDENDLMIINKSGIVIRLAVAEVRVMGRATQGVRLINLARKNDTIASVCKVMSS 828 >gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859] gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859] Length = 955 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/900 (40%), Positives = 548/900 (60%), Gaps = 67/900 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WN ++ K AR+ Sbjct: 73 ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+AA Y+ + RMAQD+S+R L++GQGNFGSVDGD AA RYTE RL+K Sbjct: 133 GDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +L L +D VDF PNYDG+ +EP VL +P +L+NG GIAVGMATNIP HNL E Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V+ C+ V+ NP+ +D +++++ PDFPTG ++ G + + AY TGRG +IR +HIE+ Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHIEE 312 Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 +G+RE I++ EIPYQVNK +LEKIA+LV EK+I ++ +RDESD+ G R VIELKRG Sbjct: 313 WDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKRG 372 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LN LY+ T LQ F +N+VAL +P++ + IL F++FR EVV R T + Sbjct: 373 ANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMFRR 432 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 +KAR R +++ G AIA+ANLD+ + IIR S N + A L++R W A + ++I Sbjct: 433 DKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLD 492 Query: 435 ------DDSSYTIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +D T+G +D Y LS +Q + IL++RL LTGL ++ I E L I + Sbjct: 493 KKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTIID 552 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II L +V E R+T+IV +++ +D I +MVVT++ G Sbjct: 553 LTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTG 612 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+K YRAQ+RGG+G+ M++ D + LF+ +TH +L F++ G ++ VW + Sbjct: 613 YIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVWDV 672 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS ++G+ ++N+L L E++T ++P DE +LY+ AT G V++ + DF Sbjct: 673 PEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVKKTPIGDFK 731 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R+G A+ L D ++ ++D++L + G+ VRF +R GR + GVRG Sbjct: 732 NQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-GRAATGVRG 790 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G +VISM L+ GD E++T Sbjct: 791 MRLDEGQKVISM-------------------------LVCGDDEDVT------------- 812 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +LT +E G+GKR+ ++ R KGI + ++ N G +V+ Sbjct: 813 -------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSALL 857 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V +ND+IIL++ G L+R VNEIR+ R T+GV + S + ++V +ER+ E++ D A Sbjct: 858 VKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGDNA 917 >gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] Length = 854 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/904 (40%), Positives = 552/904 (61%), Gaps = 91/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM QDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 AKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNP I + LM+ I PDFPTGA I G G+KNAY TGRG +V+R + Sbjct: 192 SEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIYGLQGVKNAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE SG+ ++IVVTEIPY VNKA ++E IA+LV+E ++ I+++ DE+ RQG R+V+++ Sbjct: 252 IE--SGETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A++ILN+L++ T+LQS FSVN +AL +P L +K FV R +V +RRT+ Sbjct: 310 KRDANANIILNKLFKMTALQSSFSVNCIALVNGRPRLLNLQECIKYFVEHRHDVTIRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 370 FDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKR-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E+Q++AI+++RLA+LTGL D + E L IK +IL + Sbjct: 416 ------------FNLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNP 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R ++K EL +K++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 464 ERCKEVMKNELYDIKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLT 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++ Sbjct: 524 DFKEQARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSSK 583 Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+A+ N+LSL G+ + + ++E + YVVF TK G V++ L + + +G Sbjct: 584 GRAIQNMLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAYSRPRNNG 643 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ ++ DE++ V +++++ K G+ RF + +R GR S GVRG+ L + Sbjct: 644 VIAININDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTM-GRVSTGVRGMKLDED 702 Query: 733 --DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M +V NDS Sbjct: 703 GEDEVIGMVVV-----------------------------------NDS----------- 716 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LVA+ V D+ Sbjct: 717 -----ENETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITE--KTGKLVAIKTVTDD 769 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI---VDEA 906 + +++++ G +IR+ V+E R+ RAT+GV +I + K + + SV ++R +E+ VDE Sbjct: 770 NDLMIINKSGIVIRMAVSECRVMGRATQGVRLINLSKKSDTIASVCKVRSAEMEEKVDEV 829 Query: 907 ESTE 910 + + Sbjct: 830 NNAD 833 >gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] Length = 808 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/880 (42%), Positives = 539/880 (61%), Gaps = 87/880 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K A Sbjct: 8 IVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF PNYD S +EP VL A++P +LVNG GIAVGMATNIP HN+ Sbjct: 128 SKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNM 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG + +ID+PD +D LM++I+GPDFPT +ILG+ GI+ AY TGRG I +R + Sbjct: 188 CEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRANAR 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE S + +I+VTE+PYQVNKA ++EKIA+LVR+K+I I L DESDR G R+VI+L+ Sbjct: 248 IETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVIDLR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+VILNQLY++T LQ F V M+AL KP+ L +L ++A +E+V+ RRT+Y Sbjct: 308 RDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRRTRY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ +LD V+ IR S + AR L+ Sbjct: 368 DLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALIS---------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL+LRL RLTGL R+ I E + I+E IL+ Sbjct: 412 ----------GFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEG 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L IIK EL +VK + RRTR+ +++ ED I ED+V+T++H Y+KR+ L Sbjct: 462 RILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGGKG G+ +++DFV +L I +TH ++LFF++ G VY K + + S A+G Sbjct: 522 YRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 A+IN+L L + E+IT ++ +N + Y+ ATK G V++ L +F +++ G Sbjct: 582 TAIINLLQLEKDEKITAVIQV----KGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLN 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ LD DE++ V+ E D++L TK G + F +R GR + GV+GISL GD+ Sbjct: 638 AINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAM-GRAARGVKGISLNDGDE 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M +S + E +T Sbjct: 697 VIGMDT------------------------LSPNAEVLT--------------------- 711 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +T G TS Y R NR GKG+ V++ + G ++ + V+ + +++ Sbjct: 712 ------VTAEGYGKRTETSEY--RAQNRGGKGLINLKVTE--KTGDVIGLRVVHPDQELM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L++ +G +IR +++I + SR T+GV + ST +++ V S+ Sbjct: 762 LITTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASM 801 Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 6/118 (5%) Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + SE ++L +E ++T++ + KR + +R NR GKGI+ + + + L+ Sbjct: 489 DTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFVENLLI 548 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898 + I+ +++G + + EI ASRA KG I KDE++ +V +++ Sbjct: 549 T---TTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVK 603 Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 96/201 (47%), Gaps = 19/201 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYKEKV 603 G VK+ L ++ +GG + + + D+D + + ++ + G V+ E Sbjct: 618 GIVKKTSLVEFKNLHKGG--LNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDD 675 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 R +G ARG + +SLN G+ + + ++ N V+ T G +R + S Sbjct: 676 VR-AMGRA-ARG---VKGISLNDGDEVIGM------DTLSPNAEVLTVTAEGYGKRTETS 724 Query: 664 DFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 ++ NR GK I +K+ + +++ + + +++L T G +R IS I V + RN Sbjct: 725 EYRAQNRGGKGLINLKVTEKTGDVIGLRVVHPDQELMLITTEGIVIRTNISDISVIS-RN 783 Query: 721 SVGVRGISLAKGDQVISMAIV 741 + GV+ +S + D V SMA++ Sbjct: 784 TQGVKLMSTGENDIVASMAVM 804 >gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] Length = 929 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/877 (42%), Positives = 526/877 (59%), Gaps = 91/877 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 80 EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL K A LL Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EP L AR+PN+LVNG GIAVGMATNI HN+GE V+ Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +ID+PD +D LM I+ GPDFPTGA+I+G GI+ +Y TGRGSI +R +H+E T R Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVESTKTGR 319 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPY VNK + EKIA LV EKRI I+D+RDES ++G R+VIELK+G V+ Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+YTSLQ+ F N +AL P+R +L +L+ ++ + +VV RRT++ L KA+ R Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G A+ ++DEV+ IIR S A L++R Sbjct: 440 AHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 S QT AILE++L RLTGL RD I EL L I D+L+ ++LG+IK+ Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKE 533 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + + RRT+I D+ ED I EDMVVT++H GYVKR+P+ YRAQ+RGG Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG SGV ++++D + ++FI STH VLFFS+ G VY+ KV LP G+ QARG A++N+L Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLP 653 Query: 624 LNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 GE+I +++ FPEDE Y++FAT HG V++ ++ + + R G IA+ + Sbjct: 654 FEDGEKIASVISCREFPEDE------YLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKD 707 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +L V + I++ T G+ + F +R GR++ GVRGI + +V+ M I Sbjct: 708 GDRLLGVRRVKPGDKIIMATTAGKAIMFSEDQVRA-TGRDTSGVRGIGMKADAEVLGMEI 766 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 N S E F+ Sbjct: 767 T-----------------------------------NGSG----------------ELFV 775 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T E+G+GKRT D+ NR G+G+ ++ + GAL A+ V +++++++ Sbjct: 776 IT--ERGYGKRTPVADYPEQNRGGQGVYTIQMT--DRKGALAAMKVVGPQHELLIITEGA 831 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 T++RV EI RAT+GV + S + +RV +V R+ Sbjct: 832 TVLRVKTAEISQTGRATQGVKMMSVDEGDRVTAVARM 868 >gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 847 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/896 (41%), Positives = 546/896 (60%), Gaps = 68/896 (7%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E K I + I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRRILF M + +WNK Sbjct: 2 KEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +LI+GQGNFGS+DGD AA R Sbjct: 62 TYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A+ LL+DL K+TV F NYDG+ + P VL A+ PN+L+NG GIAVGMATN Sbjct: 122 YTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HN+ EV++GC+A ID+ +I L LME I GPDFPT +I G+ GI+ AY TG+G I Sbjct: 182 IPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIY 241 Query: 250 IRGVSHIEKTSGDREQIVVT-EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IR S IE +++ ++ E+PYQVNKA +++ IA LV+EK+I I LRDESD++G Sbjct: 242 IRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIE+K+ A++ILNQLY T L+ F +NMVAL +P+ TL IL AF+ R ++ Sbjct: 302 RIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKI 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++RR+ + LNK R + H+L GL I++ N+D ++ +I+ S E A+ +L W + + Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421 Query: 429 DLIDLIDDSSYTIGSDGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L ++ D + +L+ Q +AILELRL +LT L + +E L Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IL + + L I+K EL+ ++D RRT+I D+ D I +E++V+ Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVI 541 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+S+ GYVK LS Y AQ+RGGKG+ V ++EDF+ +L + +TH +L FSS G +Y Sbjct: 542 TLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYW 601 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV++LP S ARG+ ++N+L L+ ERIT I+P E + S N + AT G V++ Sbjct: 602 MKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSIN---IFMATSKGMVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L +F + G IA+ L + DE++ V N I+L T G+ V F +R GR Sbjct: 659 SLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVRK-TGRT 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 ++GV+GI + K D+V+S+ + KH Sbjct: 718 AIGVQGIKIKKSDKVVSL-------------VVPKKH----------------------- 741 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 GN IL ++E G+GKRT ++F I +R+ +G A ++K N G Sbjct: 742 --GN---------------ILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN--GI 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ V + DQII++++ GTL+R V EI I R T+GV+I T+K E+VV++++ Sbjct: 783 VIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838 Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 K + + N S+ +L KE ++T+S G+ K + R GKG A + Sbjct: 516 KRRTKINVNYSDINTSDLINKENVVITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEE 575 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVV 892 + I L+ N +D I+ S KG L + V ++ ASR +G V + + +ER+ Sbjct: 576 DFIENLLVA---NTHDIILCFSSKGILYWMKVYQLPEASRHARGRPIVNLLPLSSNERIT 632 Query: 893 SVERIRE 899 ++ I E Sbjct: 633 AILPISE 639 >gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] Length = 803 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/885 (42%), Positives = 535/885 (60%), Gaps = 84/885 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K ARI G+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD AA RYTE R+ K +L Sbjct: 61 YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGMATNIP HNL EV +G Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R + IE+ S + Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQG R+VIEL+ D++L Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+LY++T LQ F V M+AL P L +L ++ R +V+VRRT++ LNKA RA Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG---------------------- 398 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q AIL++RL RLTGL R+ I E L I++ IL+S +R IIK E Sbjct: 399 ----LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDE 454 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +K + PRR+ I D++ ED I E+MV+T++ GY+KR+ +VYR Q +GG Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILS 623 G G+ +++D+VT + V TH ++LFF+S G Y+ K + +P GS +RG A++N+L Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L GE +TT++ E ++ + T+ G V+R + ++ I RSG A+ LD D Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++SV T DIL+ TKLG +RF +R+ R + GVRGI L GD V+ ++ Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVL-- 688 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 N E Q + T+ Sbjct: 689 ----------------------------------------NTDESEAQ--------VFTI 700 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKR + + + R GKG + ++ N+ G +VAV V+++D+++L+S++G +I Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758 Query: 864 RVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R +N+I + +A GV + + ++V S+ I +EI +E E Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803 >gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] Length = 828 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/889 (40%), Positives = 548/889 (61%), Gaps = 90/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+NSY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 10 VHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 70 RIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+GKDTV+F PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID N D++ L++I++GPDFPTGA ILG+ GI AY TGRG I + Sbjct: 190 TEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATILGKAGISQAYRTGRGKIKV 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +++IVVTE+PY VNKA +++KIAELV++K++ I ++RDESDR G R+ Sbjct: 250 RAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIRDESDRTGMRI 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+A+V+LN+L+++T +Q F V M++L +P+ L +L ++ +++VV Sbjct: 310 CIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNEPKILNLFDMLNYYLEHQKDVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA N+DEV++IIR + N A+ +LM+R Sbjct: 370 RRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLMER---------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++ Q +AI+++RL L GL R + E N L +I E I Sbjct: 420 ----------------FALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LLG+IK EL+ ++D+ RRT I + D+ ED I RE+ ++T++ LGY+KR Sbjct: 464 LADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPRENTIITMTKLGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ DED++ +LF+ ++H ++FF+++G VY+ K + +P S Sbjct: 524 MTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESS 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N++ L E+IT ++P E + Y+ ATK G V+++ + ++ I + Sbjct: 584 RTARGTAIVNLIQLQPEEKITAVIPINEYKEDH---YLFMATKSGVVKKSPIMEYANIRK 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G +A+ L DE++ V+ + D+ L TK GQC+RF + +R GR ++GVRGI+L Sbjct: 641 TGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSI-GRTAMGVRGINLD 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M + +A Sbjct: 700 GDDEVIGMQLNSQGEA-------------------------------------------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSE G GKRT+ +F +R GKGIR +++ + G +V V V++ Sbjct: 716 ---------LLFVSENGMGKRTAMTEFTPQHRGGKGIRCYKITE--KTGDVVGVKAVDEE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +++++++ +G +IR+ V+ I + R T GV + + + V S+ ++R+ Sbjct: 765 NEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDDNVIVASLAKVRD 813 >gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] Length = 822 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTVINAKSDEGSDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V T +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L V+EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 708 -------QEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + I++++D G +IR V I RAT+GV + R+V+ + E+ E E Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818 >gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] Length = 815 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/893 (41%), Positives = 546/893 (61%), Gaps = 85/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DE++NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K + K A Sbjct: 8 IMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDA+ R+AQ++S R L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 RLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L ++ K+T+DFRPN+D + +EP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 128 SKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD V +IDNP+ + +M+ I GPDFPTG +ILGR GI++AY TGRG I IR + Sbjct: 188 REVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIKIRAKTQ 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + +IVVTE+PYQVNKA +EKIA+LVREK++ I DLRDESDR G R+VIELK Sbjct: 248 IERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +A V+LNQ++++T LQ F + M+AL KP+ L +L ++ +++V+ RRT++ Sbjct: 308 RETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVITRRTRF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ NLD V+++IR S N E AR LM+ Sbjct: 368 DLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLME---------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+++Q +AIL++RL +LTGL R + +E L +I +IL++ Sbjct: 412 ----------NFGLTQIQAQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKEILANER 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK E+ ++ + RRT IV D ED I EDMVVT++H GY+KR+P++ Sbjct: 462 LVYQIIKDEMGEIRKKYGDDRRTAIVIDEDDFAVEDLIAEEDMVVTLTHNGYIKRLPVTT 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q+RGG+G +G+ + +DFV +F+ STH + F++ G +Y++KV+ +P RG Sbjct: 522 YRVQKRGGRGITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 A++N+L++ GE +T ++P + + ++ T+ G V++ L +FI + G IA Sbjct: 582 VAIVNLLAVEPGEYVTAVIPVKDFNAGQ---FMFMCTRQGYVKKTPLEEFINARKGGLIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V + ++ L T G +RF +R GR++ GVRGISL GD+V Sbjct: 639 LSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSM-GRSARGVRGISLGPGDKV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S+ + + E QE ++ Sbjct: 698 MSLEV--------------------------------------------LPPEMEQETEM 713 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 L V+EKGFGKRT ++R R GKGI + + N G ++ V D++++ Sbjct: 714 -----LVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKN--GPVMGAKMVRPGDEVMM 766 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ +G +IR +I I R T+GV + + +RVVS+ R+ +V+E E+ Sbjct: 767 ITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARV----VVEENEA 815 >gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271] gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271] Length = 826 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/896 (41%), Positives = 545/896 (60%), Gaps = 85/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+ +YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K Y K A Sbjct: 6 ILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GK+HPHG++A+YD+L RM QD+SLR LI+GQGNFGS+DGD PAA RYTE R+ Sbjct: 66 RIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP NL Sbjct: 126 KSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV G +A+I+NP+I +D +ME I PDFPTG +I G G+K AY TGRG +VIR + Sbjct: 186 NEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIYGYEGVKQAYRTGRGKVVIRARAV 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE IVVTE+PYQVNK ++EKI +LV +K+I IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V ++AL P+ T+ +++A++ R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLTIKEMMEAYILHRNEIVLRRTR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L+ A +AH+L GL I + NLDEV+ IR SPN A+ LM+R Sbjct: 366 YDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+EVQ++AILE+RL RLTG+ R I N+ I+E IL++ Sbjct: 412 ------------FALTEVQSKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + IIK+ELL VK RRT IV + ED I +ED+V+TV+H G++KR P+S Sbjct: 460 ERQMEIIKEELLRVKAVFGDERRTEIVPQEGEFSIEDMIAQEDVVITVTHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G + +DFV +FI STH +LFF+S+G + KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L +GE TI + ++ + L++V AT G +++ ++ F + R+G Sbjct: 580 GRSLANIMELQKGE---TIRAYINVKTFDDPLFIVMATARGLIKKTEIEAFSRPRRNGIA 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ ++ DE++ E+DI++ G VRF +R GR ++GV+GI+L + Sbjct: 637 AISIEDGDELIEARLTDGEHDIIMAKNSGYAVRFAERDVRAM-GRTAMGVKGITLDDDEY 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ISM +TS ++D+S Sbjct: 696 CISM---------------------------------VTSKRSDTS-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ GFGKR+ D+R++ R +G+ + ++G LV + VND D +I Sbjct: 709 -----LLAVTDNGFGKRSLVDDYRLTRRGARGV--ITLKAHEKVGNLVGLLDVNDGDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++ G + R V+ IR+ R T GV + + +++ + R+ +++ D + E Sbjct: 762 IITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKTDDPDVIDGPE 817 >gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457] gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457] Length = 830 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/864 (42%), Positives = 524/864 (60%), Gaps = 100/864 (11%) Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 1 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP Sbjct: 61 VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRS 180 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VI Sbjct: 181 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 240 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RR Sbjct: 241 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 300 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 301 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 360 Query: 433 LID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 + Y I DG +L+E Q +AIL+LRL +LTGL + I +E L E Sbjct: 361 RAGTDAARPEWLEPQYGI-RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEE 419 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I + IL+S RL+ +I++EL +++ RRT I D++ E+ I RED+VVT+S Sbjct: 420 IAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLS 479 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GYVK LS Y AQRRGGKG+S M++ED++ L + +TH ++L FS+ G Y+ KV Sbjct: 480 HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 539 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRN 660 ++LP+ S ARGK ++N+L L + ERIT I+P F ED+ ++ AT G V++ Sbjct: 540 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSEDK------FIFMATGDGTVKKT 593 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF------------ 708 L F + +G IA+ L D ++ V+ E++I+L +K G+ VRF Sbjct: 594 SLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDEN 653 Query: 709 --PI-----------SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 P+ +R GR + GVRG+ LA GDQV+S+ IV + D Sbjct: 654 GQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGD-------- 703 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 +LTV+E G+GKRTS Sbjct: 704 --------------------------------------------VLTVTENGYGKRTSLS 719 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 ++ R +G+ + VS+ N G++V V + D+ +++++ GTL+R V E+ R Sbjct: 720 EYPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGR 777 Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899 T+GV + T++ E VV ++RI E Sbjct: 778 NTQGVTLIRTSEGESVVGLQRIDE 801 >gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132] gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132] Length = 815 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 547/887 (61%), Gaps = 86/887 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +++I E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M +G +N+ Y K AR+ Sbjct: 4 TITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARV 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMAR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 L D+ K+TVDF PNYD + QEP VL + PN+L+NG GIAVGMATNIP HNLGE Sbjct: 124 LCSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++DG V ++DNP+ +++LM+ I+GPDFPTG I G G+ +AY TGRGSI IRGV +E Sbjct: 184 LIDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGGQGLIDAYTTGRGSIKIRGVVELE 243 Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + G +E I++ EIPY +NK+ ++EKIA LV EK+I +ADLRDESDR+G R+V+ELKR Sbjct: 244 EARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKR 303 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 GA AD+I+N LY++T L++ F +NM+A+ G +P L +L F+ R EV++RRTK+ Sbjct: 304 GAIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLGHFLEHRREVIIRRTKFD 363 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L+K R H+L GL IA+ N+DEVV++IR S PE AR LM R Sbjct: 364 LDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSR---------------- 407 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL++RL +LTGL D + EL L +I+ ILS+ Sbjct: 408 ----------FSLSDIQAKAILDMRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEV 457 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSV 555 L G+I+ EL +K TPR++ ++ LD D ED I E+ V+T+S GY+KR PLS Sbjct: 458 LKGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSN 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y AQ+RGGKG +GV D DF+ + + H ++ F++ G ++K KV ++P GS A+G Sbjct: 518 YTAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKG 577 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+L L++ E I T + E ++ + +F TK G ++R+ + + +G A Sbjct: 578 GHVNNLLPLDKDEHIATCLSLRE---FADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRA 634 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V E D +L ++ G +RF I+ R GR + GV+G++L D+V Sbjct: 635 VNLRDHDELMDVREIEPEVDCILVSREGSAIRFNINDARPM-GRATAGVKGMALRPNDEV 693 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ C +++GD +ER Q Sbjct: 694 VA---------------C----------VVTGD------------------QERDQ---- 706 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +LTVSE G+GKRT+ +R+ R GKGI ++ N+ G +V VN++D +IL Sbjct: 707 ----LLTVSEGGYGKRTTIDQYRVQTRGGKGI--LNMRLTNKTGMVVGACMVNESDDVIL 760 Query: 856 VSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ + +IR+ V+E+ + RAT+GV + D +V+ + + + + Sbjct: 761 LTSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDD 807 Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust. Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 14/213 (6%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 V+ G +KR + +Y R G V +RD D + D+ + + S G + Sbjct: 610 VTKKGMIKRSSIGLYGNCRT--TGIRAVNLRDHDELMDVREIEPEVDCILVSREGSAIR- 666 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 + + P R A + ++L + + + + E ++ ++ G +R Sbjct: 667 --FNINDARPMGRATAGVKGMALRPNDEVVACVVTGDQERDQ----LLTVSEGGYGKRTT 720 Query: 662 LSDFIQINRSGK--IAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFA 717 + + R GK + M+L ++ ++ V C + +D++L T + +R +S + Sbjct: 721 IDQYRVQTRGGKGILNMRLTNKTGMV-VGACMVNESDDVILLTSQNKIIRMSVSEVSQTR 779 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 GR + GVR + + ++VI +V+ D D E Sbjct: 780 GRATQGVRLVRMDDDNKVIGFDLVMDDDEDLGE 812 Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust. Identities = 61/284 (21%), Positives = 112/284 (39%), Gaps = 36/284 (12%) Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693 P++E+ V+ ++ G ++R LS++ R GK ++ D I + T Sbjct: 495 IPDEET------VITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQTGDGDFIHTFMLTTNH 548 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 ++L T G+ + + + G AKG V ++ L D D C Sbjct: 549 QHLVLFTNFGKMFKIKVHQV----------PEGSRYAKGGHVNNL---LPLDKDEHIATC 595 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT----------- 802 A R T++ ++ + GN + + L++ L Sbjct: 596 LSLREFADDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAVNLRDHDELMDVREIEPEVDC 655 Query: 803 --VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 VS +G R + D R R+ G++ + +E+ A V V + DQ++ VS+ G Sbjct: 656 ILVSREGSAIRFNINDARPMGRATAGVKGMALRPNDEVVACV-VTGDQERDQLLTVSEGG 714 Query: 861 TLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIV 903 R +++ R+ +R KG++ T K VV + ES+ V Sbjct: 715 YGKRTTIDQYRVQTRGGKGILNMRLTNKTGMVVGACMVNESDDV 758 >gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 907 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/916 (42%), Positives = 544/916 (59%), Gaps = 104/916 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA + Sbjct: 28 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL++ Sbjct: 88 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ K+TVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT I GR GI+ AY GRG+I +R + +E Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 267 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 328 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 387 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 388 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 431 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 432 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 481 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 482 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 541 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 542 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601 Query: 617 ALINILSLNQGERITTIMP---FPE-----DESSWNN----------------LYVVFAT 652 ++N++ L GE++ I+P PE DE++ +V T Sbjct: 602 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVT 661 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G IA+ ++ DE+++ + ILL+T G +RF S Sbjct: 662 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 721 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L GD+V++ A + A + Sbjct: 722 VRPM-GRTAYGVKGITLEAGDEVVAGAAIPAAAEGEQAHTV------------------L 762 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T N ++E R Q R GKG+ Sbjct: 763 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 793 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV +I +K+E+V Sbjct: 794 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 851 Query: 892 VSVERIRESEIVDEAE 907 V V R+ +E EAE Sbjct: 852 VGVARV--AETTPEAE 865 >gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] Length = 828 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/894 (41%), Positives = 540/894 (60%), Gaps = 87/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K Y K A Sbjct: 6 ILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TV F N+D S +EP VL + PN+LVNG GIAVGMATNIP NL Sbjct: 126 KNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+G +A+I+NP+I +D +ME I PDFPT +I G G+K AY TGRG +VIR + Sbjct: 186 SEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIYGYEGVKQAYHTGRGKVVIRARAV 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI EL+ K+I IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V ++AL P+ L +++A++ R E+V+RRT Sbjct: 306 KRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLNLKEMMEAYLKHRNEIVLRRTT 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L A +AH+L GL I + NLDEV+ IR SPN A+ +LM++ Sbjct: 366 YELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEK-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q++A+LE+RL RLTG+ RD I + N I+E IL++ Sbjct: 412 ------------FGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFILANP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + IIK ELL VK RRT I + ED I +ED+V+T++H ++KR P+S Sbjct: 460 EKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G R EDFV +F+ STH +LFF++ G + KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L GE+I + ++ + L+++ AT G++++ ++ F + R+G Sbjct: 580 GRSLANIMELQPGEKIKAYINV---KTFDDPLFIIMATAKGSIKKTEIEAFSRPRRNGIA 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ ++ DE++ E+DI+L G VRF +R GR ++GV+GISL +G+ Sbjct: 637 AITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPM-GRTAMGVKGISLDEGET 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ISM +TS + D+S Sbjct: 696 CISM---------------------------------VTSKRPDTS-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ GFGKR+ D+R++ R KG+ + ++G LV + VND+D +I Sbjct: 709 -----LLAVTDNGFGKRSKVEDYRLTRRGAKGV--ITLKAHEKVGHLVGLLDVNDSDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +++ G + R V+ IR+ R T GV I + + + + R+ +S VDE E+ Sbjct: 762 IITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATARVPKS--VDEEEN 813 >gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159] gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159] Length = 825 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/894 (42%), Positives = 561/894 (62%), Gaps = 86/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L IL ++ ++EV+VR Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL +K + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ D+ +++ Y+ F T+ G V+R +S F I + Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T LG VRF SA+R GR + GV+G++L Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI AD+ I++ R Sbjct: 698 KNDYVIG--------ADH------------------------------------IADSRN 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LT++EKG+GK+T + ++ R GKGI+ +++ N G L + VND+ Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + I++++D G +IR V +I R+ GV + ++ ++V+ ++ SE+++ Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVK-SEVIE 815 >gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] Length = 829 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/898 (40%), Positives = 557/898 (62%), Gaps = 90/898 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V I+ EM+ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ K Y Sbjct: 4 EGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG++++Y AL R+AQD++LR +++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K A ++ D+GK+TVDF PN+DG +EPVVL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+DG +IDNP+ + LM I+GPDFPT +I+G++GI+ AY TGRG I +R Sbjct: 184 HNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 S IE +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+VI Sbjct: 244 KSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+K+ A++++ILNQLY++T LQ F +NM+AL +PE L IL+ ++ F+E+V+ RR Sbjct: 304 EIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRRR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L KA RAH+L GL IA+ ++DEV+ +IR S + A+ LM + Sbjct: 364 TEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK------------ 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+L+L RLTGL R+ I +E N L I E IL+ Sbjct: 412 --------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSILA 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +++L II+ EL +K + R+T I D++ ED I E++V+T++H GY+KR+ Sbjct: 458 DENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRIN 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y +Q+RGG+G + +++DFV ++FI STH ++LFF++ G +YK K +++P Sbjct: 518 ADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRA 577 Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G ++N+L L+ E+I ++ E DE S ++V TK G +++ + + I +S Sbjct: 578 AKGTNVVNLLQLDPNEKIQAVISIKEFDEES----FLVMCTKKGIIKKTVVGMYKNIRKS 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L+ DE++SV ++DI++ T G +RF +R GRN++GV+GI+L + Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ M + + +++ + +N ++ E +CQ Sbjct: 693 DDFVVGMEVP------------------------NQESDVLVVSENGFGKRTHVGEYKCQ 728 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +R GKG+ VS ++ G LV V V D D Sbjct: 729 -----------------------------HRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIVDEAE 907 +++L+++ + IR+ V++I SR GV + DE+V+++ +I +SE ++++E Sbjct: 758 ELMLINNLHS-IRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 814 >gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2] Length = 828 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/896 (41%), Positives = 547/896 (61%), Gaps = 91/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+ NK Y K A Sbjct: 10 ILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+ MGK+HPHG+++IYDA+ R+AQD+S R LI+G GNFGSVDGD AA RYTE R+ Sbjct: 70 RLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++L D+ KDTVDF+PNYD QEP V+ A++PN+LVNG GIAVGMATNIP HNL Sbjct: 130 AKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++G +A IDNP+I++ LM I+GPDFPTGA I+G GI +AY TG+GS R +H Sbjct: 190 TEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGSFRTRAKAH 249 Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ + +I+VTEIPY VNKA ++EKIAELVREKRI I DLRDESDR G R+V+EL Sbjct: 250 VEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R + V+LNQLY++T ++ F VN++AL +P+ L I+ F+ +++V+VRRT+ Sbjct: 310 RRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQKDVIVRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA AH+L GL IA+ +DEV+ IIR S + ++A+ LM R Sbjct: 370 FELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFG------------ 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q++AI+++RL RLTGL R+ I + + I +L+S Sbjct: 418 --------------LSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAYLKAVLNSE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +L IIKQEL VK++ RRT I M ED I E++V+T+SH GY+KR+PL+ Sbjct: 464 QMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLN 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y++QRRGGKG G+ R+EDFV +F STH +LFF++ G VY+ K +P + Sbjct: 524 TYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGK 583 Query: 615 GKALINILSLNQG-ERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSG 672 G AL+N+LS+N E+IT ++ +N + ++ AT+ G V++ L ++ + G Sbjct: 584 GTALVNLLSINPSEEKITAVLSI----RKYNEDFHLFMATRKGIVKKTLLKEYDSPRKDG 639 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V + I++ TK G C+RF S +R GR + GV+GISL K Sbjct: 640 LIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKGISLEKE 698 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+SM ++ +A+ Sbjct: 699 DLVVSMDVIYEEEAE--------------------------------------------- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDND 851 IL+++E GF KRTS ++R+ R GKGI AT + +K ++ L + P ND Sbjct: 714 -------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNAKTGKLVGLKVMRPEND-- 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++++++ G +IR V+ I R+ +GV+ + +VV++ + E +E++ Sbjct: 765 -MMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIG-ESKVVAIAVVDNKEDAEESD 818 >gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713] Length = 850 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 557/897 (62%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K A Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+++ Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT++ Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL RD + NE + + I + DIL+ Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +ELL ++++ RRT ++ G +L +EDED I E++VVT++H GY+KR+P S Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P A+ Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673 G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++G Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L DE+++V +I++ T G V F IR GR++ GVRGI L D Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI AI L+ +S V Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ I Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++++DKG +IR ++++ RAT GV + + D V ++ ++ E DE E++E Sbjct: 766 MVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819 >gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] Length = 850 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 556/897 (61%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K A Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+++ Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT++ Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL RD + NE + I + DIL+ Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +ELL ++++ RRT ++ G +L +EDED I E++VVT++H GY+KR+P S Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P A+ Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673 G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++G Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L DE+++V +I++ T G V F IR GR++ GVRGI L D Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI AI L+ +S V Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ I Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++++DKG +IR ++++ RAT GV + + D V ++ ++ E DE E++E Sbjct: 766 MVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819 >gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093] gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093] Length = 827 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/898 (42%), Positives = 539/898 (60%), Gaps = 83/898 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M ++G+ KYV Sbjct: 7 EGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKYV 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A + GEV+ KYHPHG+ AIYDA+ RMAQDW++R L++GQGNFGS+DGDP AA RYTE Sbjct: 67 KSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ A +L D+ K+TVDF+ N+DG+ EP VL + PN+LVNG GIAVGMATNIP Sbjct: 127 ARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIPP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEVVDG +A++DNP+I LD LME I+GPDFPTG V + RTGI+ A+ TGRGSI +R Sbjct: 187 HNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGV-MSRTGIRQAFETGRGSIRLRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 E+ G IVVTEIPYQVNK ++++ A LVR KRI DIA++RDESDRQG R+V Sbjct: 246 KVRFEE-RGRGTSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIVF 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRGA +++LNQLY+YT LQS FSVN +A+ P L L F+ R +VV RR Sbjct: 305 ELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T + L KAR+RAH+L G IA+ LDEV+ +IR S + TAR L+ Sbjct: 365 TTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLV-------------- 410 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+EVQ +A+L++RL RLTGL R+ ++ E L EI IL Sbjct: 411 ------------AEFGLTEVQAQAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L +IK+EL VK RRT+I + D+ ED I E MVVT++ GY+KR P Sbjct: 459 DANELRKVIKRELREVKKNFADARRTQISDNDSDISKEDLIAEEHMVVTLTRGGYIKRTP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L+ YRAQ RGG+G + +++D + L + +TH +LFF+ G VY+EK++ LP Sbjct: 519 LAAYRAQARGGRGVNAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAERA 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG L NIL L + ER+ T++ + + Y VFAT+ G +++ + ++ +N SG Sbjct: 579 ARGSHLRNILPLAEDERVATVLSVRDFNAEG---YFVFATRQGMIKKTAIREYGNLNASG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++SV ++L T+ GQ +RFP + +R GR + GVRGI L Sbjct: 636 LIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVR-DTGRATQGVRGIRLKPN 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++S++++ +H+ GD E Sbjct: 695 DALVSLSVIAG------------EHL--------GDAE---------------------- 712 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L V+E G+GKRT D+ + R G+G+ V+ + G LV++ V +++ Sbjct: 713 -------LLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTP--KTGPLVSLDYVRGDEE 763 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++++S+ G LIR V E+ R ++GV I +RVVSV + E + A T+ Sbjct: 764 LLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETLGRAADTD 821 >gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299] gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299] Length = 856 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/887 (42%), Positives = 545/887 (61%), Gaps = 87/887 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++I D +++SYL Y+++VI+GRA+PD +DGLKPVHRRILF M + + Y Sbjct: 6 ENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSARAPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R LI+GQGNFGSVDGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R K + +L D+ KDTV+F NYD + +EP VL R P +L+NG GIAVGMAT IP Sbjct: 126 ESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMATKIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++D + ++DNP+ D LME I+GPDFPTG I GR GI +AY TGRG + IR Sbjct: 186 PHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I I+++RDESDR G RVV Sbjct: 246 AKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A +++++N LY+ T +++ F + ++A+ +P+ FTL +L F++ R+ V++R Sbjct: 305 IELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLNVFISHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N A+ +L R Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS +Q++AIL++RL RLTGL RD + E L I E IL Sbjct: 414 ---------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L+ IIK+EL ++++ + R T I + +++ ED I E MVVT++H GYVKRV Sbjct: 459 KSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+ Y QRRGGKG+ V D+DF+ F+ +TH +++F +++G +Y KV+R+P GS Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+GKA++N+++L E+I I+P + DES + F T++G V+R LS+F I Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVKRTSLSEFSNIRS 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ LD DEI++ + T L+ T LGQC+RF + R GR++ GVRGI Sbjct: 635 NGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKF 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KH DT+ + D++V NI Sbjct: 694 --------------------------KH----------DTDFVV----DANVVDNI---- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EQ +LTVS+KG GKRT+ ++R +NR+G G+ + +S + G +V V++ Sbjct: 710 -------EQELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--KTGNVVGAVLVDE 760 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +++++ G +IRV + IR A R T GV+I + ++VVS+ + Sbjct: 761 AQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAK 807 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF-FSSLGFVYKEKVW 604 G VKR LS + R G +V+ D D + I + T L F+SLG + Sbjct: 619 GVVKRTSLSEFSNIR--SNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLG-----QCI 671 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKL 662 R + + +G++ + +G + F D + +N+ ++ ++ G +R + Sbjct: 672 RFDVEKTREQGRSTRGV----RGIKFKHDTDFVVDANVVDNIEQELLTVSQKGIGKRTTV 727 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ + NR SG I+MKL ++ ++ + D+++ T +G+ +R + IR AGR Sbjct: 728 EEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRK-AGR 786 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747 N+ GV +++ D+V+S+A D D Sbjct: 787 NTSGVIIVNVDAKDKVVSIAKCPKEDDD 814 >gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 820 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/894 (41%), Positives = 544/894 (60%), Gaps = 91/894 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E + + I+DE++ S+L Y+++VI RA+PD+RDGLKPVHRRIL+ M +G+ +K Y Sbjct: 5 EGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKSYS 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+ MGK+HPHG+++IYDA+ RMAQ++S R LI+G GNFGSVDGD AA RYTE Sbjct: 65 KSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ A ++L D+ KDTVDF PNYD +EP VL +++PN+LVNG GIAVGMATNIP Sbjct: 125 VKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDN-----PDID---LDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 HNLGEV+DG +ID PD D + L+++I+GPDFPT +++G GI+ AY TG Sbjct: 185 HNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAYTTG 244 Query: 245 RGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 RGS+ IR + IEK ++ QI+VTEIP+ VNK+ ++EKIAELV+EK+I I DLRDES Sbjct: 245 RGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLRDES 304 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 +R+G R+VIEL+R + +ILN LY++T ++ F +N++AL P+ TL +L+ F+A Sbjct: 305 NRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEYFIA 364 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 ++EV++RRT + L KA+D AH++ GL A+ +DEV+ IIR S N ETAR LM R Sbjct: 365 HQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTR--- 421 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 SE Q++AIL++RL RLTGL R+ + + L E Sbjct: 422 -----------------------FEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDE 458 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 I L +L S + IIK EL ++ + D PRR+ I M+ ED I ED+V+TV+ Sbjct: 459 IAYHLAVLQSDKMVREIIKTELGEIRVKYDNPRRSIITIDTTKMDIEDLIADEDVVITVT 518 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KR+PL+ YR+QRRGG+G +G+ + DFV LFI STH +LFFS+ G VY+ + Sbjct: 519 HKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRA 578 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +P A+G A+IN+L+L+Q E+IT + + ++ Y++ T+ G +++ L Sbjct: 579 HAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKD---FKDDSYLLTVTRKGIIKKTALE 635 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 ++ + G IA+ LD DE+++V ++DILL T G+ +RFP + +R GR + G Sbjct: 636 EYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPM-GRTARG 694 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRG+ L K + V+ + ++ D D + Sbjct: 695 VRGMKLGKKEYVVGVDVIGGYDKDME---------------------------------- 720 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +LT++E GF KRT +FRI NR G G+ V+K + G L Sbjct: 721 ----------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNK--KTGKLAG 762 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + V +++++++D G +IR V+ I + R+ +GV T +D +VV++ + Sbjct: 763 IKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGEDNKVVALAKF 816 >gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] Length = 915 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/906 (41%), Positives = 553/906 (61%), Gaps = 38/906 (4%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + D K VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ Sbjct: 4 THDHRFAKETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNN 63 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R +L++GQGNFGSVDGD A Sbjct: 64 WNSSYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAA 123 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K AH +L D+ +DTV+F PNYDGS QEP+V+ R+P++L NG GIAVGM Sbjct: 124 AMRYTEIRMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLG+ VD C+ ++ +PD +DAL++ I+ PDFPTGA I G G++ Y TGRG Sbjct: 184 ATNIPPHNLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIYGLAGVREGYRTGRG 243 Query: 247 SIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +V+RG +HIE G+RE I++ EIPYQVNKA ++EKI ELVREK + I+DLRDESD Sbjct: 244 RVVMRGKTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESD 303 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL F+ Sbjct: 304 KSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQILAEFLRH 363 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EVV RRT + L KAR H+ G A+A++N+D ++++I+ S + A+ +L+ R W + Sbjct: 364 RREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQS 423 Query: 425 SDIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + D++ D + + DG YLS++Q AIL + L LTGL +D I Sbjct: 424 GLVGDMLSRTDLDLNMARPEGLPENLGLREDG-YYLSDLQADAILRMSLRNLTGLDQDTI 482 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 + ++ +I + LDIL+ R+ II EL+ +K PRR+ I D+ DED I Sbjct: 483 LADYKTIMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDPRRSEINPFGGDIADEDLI 542 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH ++ F+ Sbjct: 543 PPREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFT 602 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVF 650 + G + KV++LP G +RG+ + N++ L++ E+++ I+P FPEDE YV F Sbjct: 603 NHGRCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFPEDE------YVFF 656 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 AT G V++ +LS F +++ G A+ L D ++ V + NDI+L + LG+ +R Sbjct: 657 ATAMGVVKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIR--- 713 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + R+S GD + D + + KH SG Sbjct: 714 --FNEYWERSSD-----DEETGDDNDTEISGSQEDDNAESAPISGKHGVRPSGRGSGGLR 766 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + +N V C++ +L+ +LT + G+GKRT + N+ G+G A Sbjct: 767 GMRLPENGRIVSLITFAPECEQSELQ---VLTATANGYGKRTPIASYSRKNKGGQGNIAI 823 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + + N G LVA V+++D ++L++ G LIR V +IR RA GV + + + E Sbjct: 824 NTGERN--GDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGET 881 Query: 891 VVSVER 896 +VS+ER Sbjct: 882 LVSLER 887 >gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] Length = 884 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/893 (40%), Positives = 549/893 (61%), Gaps = 86/893 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + V N+ Sbjct: 2 QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K++K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR ++GQGNFGS+DGDPPAA R Sbjct: 62 KHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE +L+K + +L DL KDTVDF+ N+D S EP V+ + P +LVNG GIAVGMATN Sbjct: 122 YTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E +D VA IDN +I +D LM+ I PDFPTG +I G G+++A+ TGRG IV Sbjct: 182 MAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + E+ G+R I+VTEIPYQVNKA M+ + AELV++++I I ++RDESDRQG R Sbjct: 242 LRAKINFEEV-GNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLR 300 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V ELK A +V+LN LY+YTSLQ+ FSVN +AL +PE+ L I+ FV R EVV Sbjct: 301 IVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +RRT++ L KA++RAH+L G + +LD+ + IIR S NP A+ LM+ Sbjct: 361 IRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE------ 414 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +AIL+LRLARLTG+ D IR E + + I++ Sbjct: 415 --------------------FDLSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRD 454 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL++ SR IIK EL+ +K++ RR+ I +M ED I E +V+T+SH G Sbjct: 455 FEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR LS Y+ Q RGG G RDEDF+ + + H +LFF+ G + +V+ + Sbjct: 515 YIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEI 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664 P GS ++G+A+ N++++ ++I + + D N + VV TK+G +++ L Sbjct: 575 PEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEA 634 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +G A+++ D++L + +++I++ TK G+C+RFP R GR S+GV Sbjct: 635 YSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARA-VGRGSIGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGISL D+VI M +V ND Sbjct: 694 RGISLEDDDEVIGMIVV-----------------------------------ND------ 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ + +L VSEKG+GKRT+ D+R++NR GKG+ ++++ + G L+A+ Sbjct: 713 ----------VENETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGNLIAI 760 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D +++++ G IR+ +NE+R+ R T+GV + + ++ + ++ ++ Sbjct: 761 QNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIAKV 813 >gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K] gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K] Length = 906 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/916 (42%), Positives = 540/916 (58%), Gaps = 104/916 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ NK+Y KCA + Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL+K Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ K+TVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT I GR GI+ AY GRG+I +R + +E Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 327 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 481 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600 Query: 617 ALINILSLNQGERITTIMP---FPEDE---------------------SSWNNLYVVFAT 652 ++N++ L GE++ I+P PE +V T Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G IA+ ++ DE+++ + ILL+T G +RF S Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L GD+V++ A + A + Sbjct: 721 VRPM-GRTAYGVKGITLEAGDEVVAGAAIPAAAEGEQAHTV------------------L 761 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T N ++E R Q R GKG+ Sbjct: 762 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV +I +K+E+V Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850 Query: 892 VSVERIRESEIVDEAE 907 V V R+ +E EAE Sbjct: 851 VGVARV--AETTPEAE 864 >gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142] gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142] Length = 862 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/871 (43%), Positives = 536/871 (61%), Gaps = 60/871 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I NPD+ L++II GPDFPTG ILGR+GI +AY TGRGSI +RGV+ Sbjct: 188 LGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE I++T++PYQ NKAA++E+IA+LV EKRI I+D+RDESDR G RV Sbjct: 248 QIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L+ F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRVETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + +A+ EL+Q Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L + I E L ++I + DI Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+ II+ EL +K TPRRT IV ++ D D I E ++ ++ GY+KR Sbjct: 462 LARRERIEAIIEDELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + AQ+R +G++ ++D+D V H VLFFS G VY +++P S Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+I+ E ++++V T++G +++ LS F I Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FREDVFLVMLTRNGYIKKTALSAFSNIRT 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V +E+ I+L T+ G + F ++ GR + GV+ + L Sbjct: 639 NGLIAISLGDGDQLRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPLGRATRGVKAMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD++ISM + + AQ GD E D V N +EE Sbjct: 699 KKGDELISMDV-----------------LPAQVTAGIGDAAE------DEDVLENETEEL 735 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E + +IL ++ G+GKR FR+ R+G G+RA ++ L ++ VN Sbjct: 736 TEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLHVVNA 793 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 D++++VS++G +IR V+ I + SRA GV Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGV 824 >gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] Length = 803 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/885 (42%), Positives = 534/885 (60%), Gaps = 84/885 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K ARI G+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YDA R+AQD++ R LL++G GNFGS+DGD AA RYTE R+ K +L Sbjct: 61 YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGMATNIP HNL EV +G Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R + IE+ S + Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQG R+VIEL+ D++L Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+LY++T LQ F V M+AL P L +L ++ R +V+VRRT++ LNKA RA Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFG---------------------- 398 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LSE Q AIL++RL RLTGL R+ I E L I++ IL++ +R IIK E Sbjct: 399 ----LSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILANEARQRQIIKDE 454 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L +K + PRR+ I D++ ED I E+MV+T++ GY+KR+ +VYR Q +GG Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILS 623 G G+ +++D+VT + V TH ++LFF+S G Y+ K + +P GS +RG A++N+L Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L GE +TT++ E ++ + T+ G V+R + ++ I RSG A+ LD D Sbjct: 575 LAVGESVTTMIDL---ERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 ++SV T DIL+ TKLG +RF +R+ R + GVRGI L GD V+ ++ Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVL-- 688 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 N E Q + T+ Sbjct: 689 ----------------------------------------NTDESEAQ--------VFTI 700 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SE+GFGKR + + + R GKG + ++ N+ G +VAV V+++D+++L+S++G +I Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758 Query: 864 RVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 R +N+I + +A GV + + ++V S+ I +EI +E E Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803 >gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree] gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree] Length = 831 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/886 (40%), Positives = 545/886 (61%), Gaps = 86/886 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL R+AQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G R +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KADIEEEKG-RNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +V+LNQLY++T LQ F + M+AL +P+ L IL ++ F++EV+ RR Sbjct: 303 ELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L I IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL +K++ RRT IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIVKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+ I+L + Sbjct: 634 LIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPM-GRTASGVKAITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMDVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803 >gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 850 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/897 (41%), Positives = 556/897 (61%), Gaps = 87/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K A Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+G++ +R Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAKVE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I++ + ++QIVV E+PY VNKA ++E+IAEL REK+I I D++DESDR+G RV I+++ Sbjct: 248 IDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDVR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEV+ RRT++ Sbjct: 308 RDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRTEF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+ LM Sbjct: 368 ELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQ------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL RD + NE + I + DIL+ Sbjct: 415 -------------LSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +ELL ++++ RRT ++ G +L +EDED I E++VVT++H GY+KR+P S Sbjct: 462 RIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLPTS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + D+DF+ L STH +LFF+++G VY+ K + +P A+ Sbjct: 522 DFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSGK 673 G +IN+L ++ E+I T++ P D+ + +Y+ F T+ G V+R +S+F I ++G Sbjct: 582 GIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKNGL 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L DE+++V +I++ T G V F IR GR++ GVRGI L D Sbjct: 642 KAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRDND 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 VI AI L+ +S V Sbjct: 701 YVIGSAI----------------------------------LEPESKV------------ 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +SE G+GK+T++ ++ I R GKGI+ T++++ N G L + VN ++ I Sbjct: 715 -------FVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDEDI 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++++DKG +IR ++++ RAT GV + + D V ++ ++ E DE E++E Sbjct: 766 MVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKV---EPEDENENSE 819 >gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] Length = 907 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/916 (42%), Positives = 542/916 (59%), Gaps = 104/916 (11%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M G+ +NK+Y KCA + Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ KYHPHG+A++YDAL R+AQDW+LR LI+GQGNFGSVDGDP AA RYTECRL++ Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + LL D+ KDTVD+ PN+D S EP VL R+PN+LVNG GIAVGMATNIP HN+GE Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D V +I+NP + LM I GPDFPT +I GR GI+ AY GRG+I +R + +E Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +RE IVVTEIPYQVNKA ++E IAELVREKRI I+DLRDES R+G R+VIELKR Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A A V+LN LY +T +Q F V M+A++G +P TL +L+ FVA R +VV RRT+Y Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H+L+G IA+ ++DE++ +I+ + + + AR E+M R Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AILE++L RLTGL R I +EL + I +IL+S Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L+ +I EL VK RRT I D+ ED I E+MVVTVSHLGYVKR P+S+Y Sbjct: 481 LMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ+RGG+G++G RDEDF+ LF+ STH+ +L FS G VY KV +P A+GK Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600 Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNL---------------------YVVFAT 652 ++N++ L GE++ I+P PE + +V T Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVT 660 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ +L F + +G I + ++ DE+++ ILL+T G +RF S Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESD 720 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+GI+L +GD+V++ A + A + Sbjct: 721 VRPM-GRTAYGVKGITLEEGDEVVAGAAIPAAAEGEQAHTV------------------L 761 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T N ++E R Q R GKG+ Sbjct: 762 TVTANGYGKRTELAEYRVQ-----------------------------TRGGKGLITIKT 792 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERV 891 ++ N G +VA PV D ++++L+++ G LIR+P I + R T+GV +I +K+E+V Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850 Query: 892 VSVERIRESEIVDEAE 907 V V R+ +E EAE Sbjct: 851 VGVARV--AETTPEAE 864 >gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 809 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/882 (40%), Positives = 543/882 (61%), Gaps = 86/882 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E GI V I +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM + + N Y Sbjct: 8 ESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLASNGPYR 67 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMGKYHPHG+++IY+A R+AQD++ R L++GQGNFG++DGD AA RYTE Sbjct: 68 KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAAMRYTE 127 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF PN+D + +EP +L AR+PN+LVNG GIAVGMATN+ Sbjct: 128 VRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMATNMAP 187 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ E +DG +A IDN +I + L +II+GPDFPTGA I+G GIK AY TGRG I +R Sbjct: 188 HNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGRGKITVRA 247 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 V+ I+ +RE+IV+TE+PYQVNK+A++ KIAEL + K I I+++ D S+R+G +++ Sbjct: 248 VAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRKGINIIV 307 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A+V+LN+LY+ T +Q+ F + +AL +PE L I++ +V + EVV RR Sbjct: 308 ELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQVEVVTRR 367 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TK+ L+KA RAH++ GL IA+ N+D +++I+R S + + A+ + + Sbjct: 368 TKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEE------------ 415 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E Q++AIL++R+ RLTGL RD + E L +IK +IL Sbjct: 416 --------------FKLTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILE 461 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + L+ +IK+ELL +K++ RRT I D+E ED I +ED+V+T++ GY+KR+ Sbjct: 462 NNDVLMNLIKEELLEIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMS 521 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y+ Q+RGG+G S MRD+DFV +LF+ STH +LFF+SLG V+K K + +P S Sbjct: 522 EGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRT 581 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG A+IN+L L++ ER+T+I+P E + N L V T+ G ++R D+ I +SG Sbjct: 582 SRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMV---TEKGLIKRTPFKDYKNIRKSG 638 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+KL+ D+++ V + D++L TK G +RF +R +GRNS+GV+ + L K Sbjct: 639 IIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVRK-SGRNSMGVKSMDLDKD 697 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+S +V+ Sbjct: 698 DIVVSSDLVVD------------------------------------------------- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++++L +SE G+GK T +R NR GKG+ ++ N+ G + + V D Sbjct: 709 ----DKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKIT--NKTGDVASAAVVEKEDD 762 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++++ G +IR+ +I + R T GV + + D +VV+V Sbjct: 763 VMIIANSGIIIRILTEDISVQGRNTSGVKLMNLT-DAKVVAV 803 >gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 841 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/889 (42%), Positives = 550/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ ++PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP + IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+VI M + L++D V Sbjct: 693 LREGDEVIGMEV----------------------------------LEDDEKV------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR ++ + R+ GV + +DE+V +V ++ Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 >gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] Length = 859 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/887 (41%), Positives = 543/887 (61%), Gaps = 88/887 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + V I EMQ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + G+ +K Sbjct: 21 EPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYEDGLTPDKA 80 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCA G V+G+YHPHG+A++YDAL R+AQD+S+ L++G GNFGSVDGDPPAA RY Sbjct: 81 YKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDGDPPAAYRY 140 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K + +L D+ KDTV+F NYD S +EP VL +R+PN+LVNG GIAVGMATNI Sbjct: 141 TEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGIAVGMATNI 200 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE +D +IDNPD L+ LME I+GPDFPTGA+I+GR GI+ AYATGRG I + Sbjct: 201 PPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAAYATGRGKITV 260 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ I + R +I+VTE+PYQVNKA ++E IA++V++KRI I+++ D SDR G + Sbjct: 261 RAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDHSDRNGMHI 320 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+LKR AS ++LNQLY YT +Q+ F V M+A+ +P+ TL +L+ ++ F+EEV+ Sbjct: 321 EIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQEYIKFQEEVIT 380 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+RAH+L GL IA+ N+DE++ IIR S + TA+ + +R Sbjct: 381 RRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTER---------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L +VQT AI+++RL +LTGL R I +EL +L ++IK+ DI Sbjct: 431 ----------------FGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDI 474 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R+ I+K EL+ ++++ R+T I+ +++ ED I +E+ V+T+++ GYVKR Sbjct: 475 LAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVDIEDLIPQEECVLTLTNFGYVKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR QRRGG+G SG+ R+ED T++F++++H V+FF+S G VY+ K + +P GS Sbjct: 535 QKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGS 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G + N+L + E++T+++ PE DE Y+V T++G ++R LS + Sbjct: 595 RTSKGMNIANLLPITAEEKVTSMIRVPEFDEEK----YLVMVTRNGIIKRTLLSAYNSAR 650 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G IA++LD DE+ V N++++ TK G +RF +R GR + RG+ Sbjct: 651 KGGLIAIELDEGDELAWVRVTDGSNELIVATKKGMAIRFHERDVR-LVGRTA---RGVK- 705 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 AI L D C + RL G Sbjct: 706 ---------AITLGEDD------CVV----GMARLREGGK-------------------- 726 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +LTVSE G+G+ + D+RI R GKG+ V K ++ A+ V + Sbjct: 727 ----------VLTVSETGYGRLSPISDYRIQYRGGKGLLNYHVDKYGDVAAIKVV---DL 773 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +D +IL+S G +IR+ + IR +R +KGV + +D +VV++ R Sbjct: 774 DDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVVTLAR 820 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 EI ++ + +E I +E C +LT++ G+ KR +R R G+GI + Sbjct: 503 EIMAVSGEVDIEDLIPQEEC---------VLTLTNFGYVKRQKMDTYRTQRRGGRGI--S 551 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAK 887 +S+ E A +F +N +D ++ + G + R+ EI SR +KG+ I Sbjct: 552 GMSRREEDVA-TEMFVINSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIANLLPITA 610 Query: 888 DERVVSVERIRE 899 +E+V S+ R+ E Sbjct: 611 EEKVTSMIRVPE 622 >gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] Length = 816 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/883 (41%), Positives = 547/883 (61%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVD+ NYD S +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S +N Y+ F T+ G V+R +++F I + Sbjct: 576 RTAKGLPVVNLLKLDEGETIQTIINVQQDSS--DNSYLFFTTRLGVVKRTSVTEFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ + + GD Sbjct: 693 DGDQVVGAGV-----------------------ITEGDE--------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ +++ N G L + V Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + ++++++ G +IR V I R+T GV + ++ ++V+ Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVT 800 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 15/202 (7%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + LG VKR ++ + R+ G + ++DED + ++F+ V+ + G+ + Sbjct: 615 TRLGVVKRTSVTEFANIRQ--NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFN 672 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + S A G +N L G+++ E + V+ T+ G +R Sbjct: 673 ETAVRSMSRIATGVRGVN---LRDGDQVVGAGVITEGDE------VLVITEKGYGKRTLA 723 Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 S++ R GK A D + + T T E D+++ T G +R ++ I GR Sbjct: 724 SEYPTKGRGGKGIKTANITDKNGPLAGLMTVTGEEDLMIITNTGVIIRTSVANISQ-TGR 782 Query: 720 NSVGVRGISLAKGDQVISMAIV 741 +++GV+ + L + Q+++ V Sbjct: 783 STMGVKVMRLDQNAQIVTFTTV 804 >gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch sediment'] Length = 841 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/899 (42%), Positives = 558/899 (62%), Gaps = 92/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G+ + Y K A Sbjct: 16 VRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKAA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YD + R+ QD+S+R LI+GQGNFGSVDGD PAA RYTE RL Sbjct: 76 RIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVD PN+D + +EP +L A PN+LVNG GIAVGMATNIP HNL Sbjct: 136 AKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E VD + ++++PD D LM ++ GPDFPTGA I GRTGI++AY TGRG I +R + Sbjct: 196 SETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDAYLTGRGLIRMRAKAF 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +EK+ G RE I+V+E+PYQVNKA ++E+IAELVR+++I IADLRDESDR+G R+VIELK Sbjct: 256 VEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ILNQL+++T++QS F M+AL +P+ L L F+ R+ +V+RRT++ Sbjct: 316 KEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSHFIEHRKTIVIRRTRF 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L G IA+ +LD V+ +IR S + + AR LM++ Sbjct: 376 DLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQ--------------- 420 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +S++Q +AILELRL RLT L R I++E + I+ IL+S + Sbjct: 421 -----------FGMSQIQAQAILELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEA 469 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK+ELL++K+ RRT I+E ++E ED + E+MV+ ++H GY+KR L+ Sbjct: 470 LVCQIIKEELLAIKETYGDLRRTEILEETTEIELEDMLADEEMVIPITHGGYIKRSNLNA 529 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG +G+ ++ED+V LF+ +TH+ +L F++ G V+ KV+ LP A+G Sbjct: 530 YRSQRRGGKGMTGMATKEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKG 589 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL N L L GE+ITT++P + E + Y++ AT+ G V++ +L+ + G IA Sbjct: 590 KALANFLQLGVGEQITTVIPIRQFEV---DRYLLMATRRGIVKKTELNAYGNPRAGGIIA 646 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + LD DE+++V +++ILL T+ G +RF +R AGR + GV+GISL GD+V Sbjct: 647 ITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFKEDEVRS-AGRAARGVKGISLEGGDEV 705 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + +V A Sbjct: 706 VGAEVVAQGAA------------------------------------------------- 716 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKG---IRATDVSKINEIGALVAVFPVNDNDQ 852 +LTV+E+G+GKRT ++R+ +R GKG IRATD + G V V V DQ Sbjct: 717 ----VLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRN-----GPAVGVMLVQSGDQ 767 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAESTE 910 I+++S +G + R+ V+EI + RAT+GV + +RV +V R + + E V+EA+ + Sbjct: 768 IMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSDDEGVEEADGPQ 826 >gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] Length = 837 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/890 (40%), Positives = 552/890 (62%), Gaps = 90/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ K+TVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E++ V +ID N + +D +++I++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +++IE + + +I+VTE+PY VNKA ++EKIAELVR+K++ I DL D+S R+G R+ Sbjct: 249 RAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ ++ +LK ++ +EEVV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKHYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN+A +RAH+L GL IA+ N+DEV+RIIR S N +TA+ ELM R Sbjct: 369 RRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMAR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ AI+++RL LTGL R+ + E L +I E I Sbjct: 419 ----------------FDLTEVQASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L + ++ RRT I D+ ED I RE++V+T++ +GY+KR Sbjct: 463 LADRKLLLGVIKKEILVISEKYGDERRTSIGFDEFDISMEDLIPRENVVITMTKMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ + D+D++ +LFI +TH ++FF++ G VY+ K + +P S Sbjct: 523 MSMDTFKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT ++P E E Y++ AT+ G V++ + D+ + + Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGQ---YLLMATEKGLVKKTPIKDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ E D++L TK G C+RF +R GR S+GVRG++L Sbjct: 640 TGLAAIVLREDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRP-TGRVSMGVRGMNL- 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD +E+ ++ IS++ Sbjct: 698 ------------------------------------GDHDEVIGMQ--------ISDQ-- 711 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +++L SEKG GK T +F NR GKG++ +++ + G +V + V+++ Sbjct: 712 ------GKYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITE--KTGDVVGMKAVDED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +I++++ +G +IR+ ++I + R T GV + + ++E+V S+ ++R++ Sbjct: 764 SEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIAKVRKA 813 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 28/176 (15%) Query: 745 DADYDE---RICYMKHMSAQRRLISG-------------DTEEITSLKNDSSVEGNISEE 788 +A+Y+E +I +K + A R+L+ G E TS+ D E +IS E Sbjct: 446 EAEYEELMKKIGELKAILADRKLLLGVIKKEILVISEKYGDERRTSIGFD---EFDISME 502 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L +E ++T+++ G+ KR S F+ NR GKGI+ + + I L F Sbjct: 503 ---DLIPRENVVITMTKMGYIKRMSMDTFKSQNRGGKGIKGMQILDDDYIKEL---FITT 556 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESE 901 + I+ ++ G + R+ EI ASR +G I + + DE++ ++ IRE E Sbjct: 557 THHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQLMPDEKITAMIPIREYE 612 >gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 834 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 563/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEAIEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] Length = 852 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/889 (42%), Positives = 547/889 (61%), Gaps = 95/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SI DE+++S+L+YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G++ N+ Y K A Sbjct: 9 IQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+GKYHPHG+AA+YD L R+AQD+S+R L++GQGNFGSVDGDP AA RYTE RL Sbjct: 69 TVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ DTV+F PN+D S +EP VL AR+PN+LVNG GIAVGMAT IP HNL Sbjct: 129 TRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D VA+I++P++D + L I+GPDFPTG +++G GI+ A TGRGS+ +R +H Sbjct: 189 GEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVRVRAKAH 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G+R QIVVTE+PYQVNKA +L+KIAELV++++I DIADLRDESDR G R+VIELK Sbjct: 249 TEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A V+LN L+++T +Q F VN+VAL P+ + L+ ++A + EVV RRT++ Sbjct: 309 REAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVVTRRTRH 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +AR RAH+L GL IA++NLDEVV IR S N ETARR L++R Sbjct: 369 ELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKR--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL+LRL RLT L R + + L +I+ +L+ S Sbjct: 414 -----------FRLSERQAQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADES 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++ GII++ELL +K RRT I EG + E ED I E+MV+++SH GY+K VP+ Sbjct: 463 KVYGIIREELLEIKAAYADERRTAITAQEG-AEFEVEDLIAEEEMVISISHEGYLKSVPI 521 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +R Q RGG G +G+ +++ D++ LFI +TH +LFF++ G VY+ KV +LP A Sbjct: 522 GSFRKQGRGGVGVAGMELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAA 581 Query: 614 RGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQIN 669 +G+ + N+L L GERI ++ F E E Y++FAT+ G V++ D+ + Sbjct: 582 KGRHVANLLPLAPGERIAAVISTRDFDEAE------YLLFATRRGMVKKTPFRDYNTPLK 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G IA+KL DE+++V + E++++ T+ G+ +RF +R GR + GV+GI+L Sbjct: 636 NEGIIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVRPM-GRATAGVKGITL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D ++SM +V AD Sbjct: 695 KGDDALLSMDVVSDEAAD------------------------------------------ 712 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + V+EKGFGKRT+ +FR R G+G+ A V+ E G + V V Sbjct: 713 ----------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVN--GERGKIAGVQVVRP 760 Query: 850 N-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++++VS+ GT IR+ + + RA +GV + + + + V ++ ++ Sbjct: 761 GLHELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKV 809 >gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025] gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025] Length = 825 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/894 (42%), Positives = 560/894 (62%), Gaps = 86/894 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 7 QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 67 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +DNPD+ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 187 PHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L IL ++ ++EV+VR Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E N L I + DIL Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK EL +K + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ D+ +++ Y+ F T+ G V+R +S F I + Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDD--FHDKYLFFTTRQGVVKRTSVSAFGNIRQ 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T LG VRF SA+R GR + GV+G++L Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI AD+ I++ R Sbjct: 698 KNDYVIG--------ADH------------------------------------IADNRN 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +LT++EKG+GK+T + ++ R GKGI+ +++ N G L + VND+ Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + I++++D G +IR V +I R+ GV + ++ ++V+ ++ SE+++ Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVK-SEVIE 815 >gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] Length = 929 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/893 (41%), Positives = 534/893 (59%), Gaps = 97/893 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 80 EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++A+YD + R+AQ +S+R LI+G GNFG++DGD AA RYTE RL K A LL Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EP L AR+PN+LVNG GIAVGMATNI HN+ E ++ Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEATC 259 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +ID+PD +D LM+I+ GPDFPTGA+I+G GI+ +Y TGRGSI +R +H+E T R Sbjct: 260 YLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVESTKTGR 319 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPY VNK + EKIA LV EKRI I+D+RDES ++G R+VIELK+G V+ Sbjct: 320 SRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+YTSLQ+ F N +AL P+ +L +L+ ++ + +VV RRT++ L KA+ R Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G IA+ ++DEV+ IIR S A L++R Sbjct: 440 AHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 S QT AILE++L RLTGL RD I EL+ L I D+L+ ++LG+IK+ Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKE 533 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 E+ + + RRT+I D++ ED I EDMVVT++H GYVKR+P++ YRAQ+RGG Sbjct: 534 EMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGG 593 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG SGV ++++D + ++FI STH VLFFSS G VY+ KV LP G+ QARG A++N+L Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLP 653 Query: 624 LNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 GE+I +++ FPEDE Y++FAT G V++ ++ + + R G IA+ + + Sbjct: 654 FEDGEKIASVISCRAFPEDE------YLMFATASGMVKKTAMAAYDRSRRDGLIAINIKA 707 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D +L V + I++ T G+ + F +R GR++ GVRGI++ G +V+ M I Sbjct: 708 GDRLLGVRRVKPGDKIIMATTAGKAIMFCEDQVRA-TGRDTSGVRGITMKGGTEVLGMEI 766 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 N S E F+ Sbjct: 767 T-----------------------------------NGSG----------------ELFV 775 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 +T E G+GKRT ++ NR G+G+ +++ GAL A+ V ++ ++++ Sbjct: 776 VT--EHGYGKRTPVAEYPEQNRGGQGVYTIQMTERK--GALAAMKVVGPQHELFIITENA 831 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR------ESEIVDEAE 907 T+IRV EI RAT+GV + S + +RV +V R+ E + DE E Sbjct: 832 TVIRVKTAEISQTGRATQGVKMMSVDEGDRVCAVARMTAGKDKPEDSVEDEGE 884 >gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis] gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus] Length = 742 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/826 (43%), Positives = 518/826 (62%), Gaps = 90/826 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S E A++ LM+R Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q +AIL++RL RLTGL R+ I E L I E Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ ++L II++EL VK+ + RRT I + G+ +EDED I +++ +T++H G Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+P S Y+ Q RGG+G G+ D+DFV L STH +LFF++ G VY+ K + + Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLS 663 P S A+G +IN+L +++GE I I+P F +DE ++ F TK G +R LS Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE------FLFFTTKQGISKRTPLS 629 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I +G IA+ L DE++SV + + DI++ T G +RF +R GRN+ G Sbjct: 630 SFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAG 688 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + DQV+ M I VE Sbjct: 689 VKAITLGEEDQVVGMEI----------------------------------------VEE 708 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +++ +L V++ G+GKRT ++R+ +R GKG++ Sbjct: 709 DVN-------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741 Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L ++ +T++ G+ KR + ++ NR G+G++ N+ + + + + Sbjct: 499 EDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGT---NDDDFVEHLLTTSTH 555 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899 D I+ ++KG + R EI SR KG+ I + K E + ++ IRE Sbjct: 556 DHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIRE 607 >gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896] Length = 812 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/886 (41%), Positives = 548/886 (61%), Gaps = 86/886 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S EE I V + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q + Sbjct: 2 SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K A I G+V+GKYHPHG+ A+YDAL +MAQD+S+R L++G GNFGS+DGD AA Sbjct: 62 DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R++K + +L DL K+TVD PNYD + EP VL ARYPN+LVNG GIAVGMA Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 T+IP HNLGEV+D V +IDN D L+ +++ I+GPDFPTGA I+G + + AY TGRG Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 +V R + E+ SG + +IVVTEIPYQVNKA ++EKIAEL+++KRI I + DES+R+G Sbjct: 242 VVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIEL+R + D++LNQL++++ LQ +FS+ M+AL P+ TL +L+ ++ +EE Sbjct: 302 MRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ L KA+DR H++ GL A+ ++DEV+ IIR S + R LM+R Sbjct: 362 VVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMER--LMER------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 SE+Q +AIL+++L RL GL ++ + +E L +I Sbjct: 413 -------------------FDFSEIQAKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYY 453 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +ILS RS LL IIK+E+L +K + RRT + D++ +D I +++ VT++HLGY Sbjct: 454 QEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDIDIKDMIPDDEVTVTLTHLGY 513 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV + Y+ Q+RGGKG + + RDEDFV L + S H+ V+FF+++G +Y+ + +P Sbjct: 514 IKRVGIDTYKTQKRGGKGIASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIP 573 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G ++NIL L GE++ T++ E+++S +VV T+ G +++ L +F + Sbjct: 574 ESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQASSG--FVVMCTRKGIMKKTPLEEFQR 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 NR+G IA+ L DE++ VE +I+ + G+ + F S IR GR + GVR + Sbjct: 632 SNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFDESDIRSM-GRTAQGVRAM 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L +GD+++SM I AD + D Sbjct: 691 NLEEGDEIVSMMI---ADPEKD-------------------------------------- 709 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SE+G+GKRT ++ + R GKG R +++ + G LV V Sbjct: 710 ------------VLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITE--KTGRLVGGKVV 755 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +++D+I++V+ GTLIR+ V I + SR T GV + TA+++ + S Sbjct: 756 SNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMKTAENQDIAS 801 >gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] Length = 899 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/898 (41%), Positives = 543/898 (60%), Gaps = 91/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP+VL ARYPN+LVNG GIAVGMATNIP HN+ Sbjct: 129 SKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMATNIPPHNM 188 Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E++ V +IDN + ++ L+EI++GPDFPTGA+ILG GI+ AY TGRG I +R Sbjct: 189 REIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRVR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V++IE + + +I+VTE+PY VNKA ++EKIAELVR+K+I I +LRDESDR+G R+ Sbjct: 249 AVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESDREGMRIC 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+R +A+VILNQLY++T LQ F V M+AL +P+ TL+ +L ++ +EEVV R Sbjct: 309 IELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQPKVLTLLEMLSYYLKHQEEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R Y LNKA++RAH+L GL A+ +DEV+ IIR S N A+ L++R Sbjct: 369 RITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIER----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 ++Q +AI+++RL LTGL R+ +++E L I E IL Sbjct: 418 ---------------FEFDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + LLG+IK E+ + D+ RRT I D+ ED I E+ V+ ++ LGY+KR+ Sbjct: 463 ADEKLLLGVIKGEIQVINDKFGDERRTSIGFDEFDISMEDLIPDENTVIAMTRLGYIKRM 522 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + +++Q RGGKG G+ DEDF+ DLF+ +TH ++FF++ G VY+ K + +P S Sbjct: 523 TIDNFKSQHRGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAYEIPESSR 582 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG A++N+L L ERIT I+ E +N Y+ ATK G V++ K+ ++ I ++ Sbjct: 583 TARGTAIVNLLQLLPEERITAIIALKE---YKDNRYLFMATKDGIVKKTKIKEYQNIRKT 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L DE++ V+T + DI+L TK G C+RF +R GR S+GV G++L Sbjct: 640 GLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVR-NTGRASMGVIGMNLTN 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V++M I H Y Sbjct: 699 GDEVVAMQI--HTQGKY------------------------------------------- 713 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +LTVSE G GK T +F R GKG++ +++ + G +V VN+ Sbjct: 714 --------LLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITE--KTGNVVGAKAVNEEH 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS--TAKDERVVSVERIRESEIVDEAE 907 ++++++++G +IR+ VN I I R T GV + + KD RV S+ +++ES + E + Sbjct: 764 EVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLAKVKESSMNSEED 821 >gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397] gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall] gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397] gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall] Length = 841 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/889 (39%), Positives = 550/889 (61%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V + ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502] gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502] Length = 836 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/889 (39%), Positives = 550/889 (61%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++NI+ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIVNIIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V + ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367] gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367] gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis] Length = 844 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/893 (40%), Positives = 547/893 (61%), Gaps = 85/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T V ++ M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K + K A Sbjct: 10 VTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITPDKPFRKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE RL Sbjct: 70 RMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDT+DF+ NYDGS +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++ NPD L LME + GPDFPTG +++G+ I+ AY TG+G+I +R Sbjct: 190 TEVISALHILMKNPDASLADLMEALPGPDFPTGGIVMGKAAIRRAYETGKGTITLRAKVD 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++IV TEIPY VNKA ++E+IAEL R+KRI I D+ DE+DR G R+VI+++ Sbjct: 250 IEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTGMRIVIDVR 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F +NM+A+ P+ L IL+ ++ F+ EV+ RRT++ Sbjct: 310 RDASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLEVIRRRTEF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++DE++ IIR S + A++EL+ R Sbjct: 370 DLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITR--------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q++AIL++RL RLTGL R+ + E + IK+ +IL+S+ Sbjct: 415 -----------FSLSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDYKEILASKE 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R II +ELL ++++ RRT ++ G +L +EDED I ED+VV+++H GY+KR+P S Sbjct: 464 RQQAIIYEELLEIQNKFGDDRRTELMVGEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTS 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGGKG G+ + D+DF+ L STH +LFF++ G VY+ K + +P A+ Sbjct: 524 EFKAQNRGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAK 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N E + ++ + +N + F T G V+R + +F I +G Sbjct: 584 GIPVINLLGINNNEHVQAVINVA-NPGENDNRDLFFTTVQGTVKRTPVDEFANIRSNGLK 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ + ++++ T LG V F + +R GR++ GVRGI L + D Sbjct: 643 AINLKEDDELIDVDIINADANMIIGTHLGYAVSFAATDVRSM-GRSATGVRGIRLREHDY 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI ++ LK DS V Sbjct: 702 VIGASV----------------------------------LKPDSKV------------- 714 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +SEKG+GK+T++ ++ I R GKGI+ +VS N G L + ++ ++ I+ Sbjct: 715 ------FVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKN--GPLAGLTTLDGDEDIM 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 LV++KG +IR +++ RAT GV + A D V ++ ++ +E E DEA Sbjct: 767 LVTNKGVMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKEDETADEA 819 >gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R] Length = 845 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/880 (40%), Positives = 538/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M IC I L+ +S Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162] Length = 851 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/905 (41%), Positives = 555/905 (61%), Gaps = 95/905 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 IHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF+PN+D + +EPVVL ARYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN D ++ L+EI++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+PY VNKA ++EKIAELVREK+I I DL D S R+G R+ Sbjct: 249 RAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNM---VALNG-YKPERFTLIGILKAFVAFRE 366 I+L++ A+A+V+LNQLY++T LQ F V M VA+NG +P+ TL +LK ++A +E Sbjct: 309 CIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKYYLAHQE 368 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRTKY LNKA++RAH+L GL A+ N+DEV+RIIR S + + A++ELM R Sbjct: 369 DVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDR------ 422 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L++VQ +AI+++RL LTGL R+ + E L +I++ Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ R+ LL +I++E+L++ ++ RRT I D+ ED I RE+ V+T++ LG Sbjct: 463 LKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAYDISMEDMIPRENTVITMTKLG 522 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ + +R+Q RGG+G G+ D+D++ +L + +TH V+FF++ G VY+ K + + Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEI 582 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P ARG A+IN+L L GERIT ++P + E Y++ AT+ G V++ + D+ Sbjct: 583 PEAGRTARGTAIINLLQLMPGERITAVIPISKFEEGH---YLMMATRKGLVKKTPIQDYA 639 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + + G A+ L DE++ V+ + D++L TK GQC+RF + +R GR S+GVRG Sbjct: 640 NVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVR-STGRVSMGVRG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I+L GD+V++M + Y+ +S +N +IS Sbjct: 699 INLLDGDEVVAMQLNTQG--------YYLLVVS----------------ENGMGKRTSIS 734 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E CQ NR GKG++ +++ + G ++ Sbjct: 735 EFTCQ-----------------------------NRGGKGVKCYKITE--KTGNVIGAKA 763 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDE 905 VN+ ++I++++ +G +IR+ ++I I R T GV + + + V S ++RE E E Sbjct: 764 VNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVREKDEDKAE 823 Query: 906 AESTE 910 ES+E Sbjct: 824 KESSE 828 >gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] Length = 805 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/878 (43%), Positives = 528/878 (60%), Gaps = 84/878 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILF Q GV +K+VK A Sbjct: 4 VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR L++GQGNFGS+DGDPPAA+RYTE RL Sbjct: 64 KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ K+TVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD VA+IDNP I L+ +M + GPDFPTG L R GIK AYATGRGS+ +R Sbjct: 184 SEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGGR-LSRKGIKEAYATGRGSLKVRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ G R +VVTEIPYQVNKA ++ +IA LV+ K+I DI LRDESDRQG R+ IELK Sbjct: 243 VEE-KGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ V+LNQLY++T+LQS F+VN++A+ +P +L+ +++ ++ R+EVV RR+ + Sbjct: 302 RGANPQVVLNQLYKHTALQSSFTVNLLAIVEGEPRVLSLLDLMRHYLDHRKEVVRRRSLF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ ++DEV+ +IR S + ARR LM+R Sbjct: 362 DLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEG 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL G +K+ELL VK++ RRT + E ED I E MV+T++ G++KR+PL Sbjct: 456 RLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDLIEDEPMVITLTAQGFLKRLPLEA 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG ++ED T +F+ H +L FS+ G VY+ KV+ LP QARG Sbjct: 516 YRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +L L + E + ++ E Y+VFAT+ G V+R L ++ + G IA Sbjct: 576 VHVKTLLPLAEEEEVAALLAVRGLEGEG---YLVFATERGLVKRTALKEYANLGTGGLIA 632 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 ++L D ++ V E++ +L T GQ +RFP+ +R GR++ GV GI K Sbjct: 633 IRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRA-TGRDTQGVVGIRFKK---- 687 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 Q R++S + ++K V+ Sbjct: 688 ------------------------PQDRVVS-----LVTVKPGEMVD------------- 705 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L+VS +G+GKRT ++ + R G G+ VS +G L A+ V + +++ Sbjct: 706 ----LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVSA--RVGRLAALLKVRGTEDLLV 759 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +S KG +R PV EIR SRAT GV I + +++ + S Sbjct: 760 LSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEEDEIAS 797 >gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] Length = 858 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/904 (40%), Positives = 550/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M IC I L+ +S Sbjct: 695 DNDGQDEVIGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821 Query: 907 ESTE 910 + E Sbjct: 822 PTEE 825 >gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] Length = 858 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/904 (40%), Positives = 550/904 (60%), Gaps = 86/904 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M IC I L+ +S Sbjct: 695 DNDGQDEVIGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906 D + +++++ G IR+ V ++RI RAT+GV + + K ++++ SV ++ + DE Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821 Query: 907 ESTE 910 + E Sbjct: 822 PAEE 825 >gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] Length = 856 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/899 (39%), Positives = 550/899 (61%), Gaps = 86/899 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGN+GSVDGD AA RYT Sbjct: 63 KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECRL+K ++ DL K+TVD + N+D S QEP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL EV+D C+A I+N DI+++ LM ++ PDFPTG I G +G++ AY TGRG +++R Sbjct: 183 THNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS ++IV+TEIPY VNKA +++ IA+L +K+I I++ DESDR+G R+V Sbjct: 243 ARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T LQ+ FSVN VAL +P L ++K FV R EVV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLKDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + I +IL Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ +I EL+ VK + RR+ IV + ED ++M++T+SH+GY+KR Sbjct: 456 SNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS +RAQ RGG G G RD DF+ ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + + + D N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V +N+I++ + G+ +RF SA+RV GR + GVRG++L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+V+ M + +A Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + I+ VSE+G+GKR+ D+R +NR GKG++ +++ ++ G LV + V Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905 D++ +++++ G IR+ V ++RI RAT+GV + + K ++ + SV ++ + DE Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSESMEDE 820 >gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] Length = 826 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/886 (39%), Positives = 548/886 (61%), Gaps = 86/886 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+VI Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+ +LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803 >gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf] gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf] Length = 821 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/886 (39%), Positives = 548/886 (61%), Gaps = 86/886 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+ + LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNK+ ++E +A LV++K+I I+D+RDESDRQG R+VI Sbjct: 244 KAEIEEEKG-KNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + +++T++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+ +LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++ + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEIKKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ N+I++ T+ G C+RF +R GR + GV+GI+L + Sbjct: 634 LNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRED 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +VL +A Sbjct: 693 DKAVSMEVVLEDEA---------------------------------------------- 706 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 707 -------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803 >gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47] gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47] Length = 955 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/900 (40%), Positives = 547/900 (60%), Gaps = 67/900 (7%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ WN ++ K AR+ Sbjct: 73 ISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQHKKSARVV 132 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A Y+ + RMAQD+S+R L++GQGNFGSVDGD AA RYTE RL+K Sbjct: 133 GDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRYTEVRLKKL 192 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +L L +D VDF PNYDG+ +EP VL +P +L+NG GIAVGMATNIP HNL E Sbjct: 193 SSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNIPPHNLRET 252 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V+ C+ V+ NP+ +D +++++ PDFPTG ++ G + + AY TGRG +IR +HIE+ Sbjct: 253 VNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAIIRAKTHIEE 312 Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 +G+RE I++ EIPYQVNK +LEKIA+LV EK+I ++ +RDESD+ G R VIELKRG Sbjct: 313 WDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMRGVIELKRG 372 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+A+V+LN LY+ T LQ F +N+VAL +P++ + IL F++FR EVV R T + Sbjct: 373 ANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVVTRVTMFRR 432 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--- 434 +KAR R +++ G AIA+ANLD+ + IIR S N + A L++R W A + ++I Sbjct: 433 DKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAEMIKRANLD 492 Query: 435 ------DDSSYTIG-SDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 +D T+G +D Y LS +Q + IL++RL LTGL ++ I E L I + Sbjct: 493 KKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYKELVDTIID 552 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ R+ II L +V E R+T+IV +++ +D I +MVVT++ G Sbjct: 553 LTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREMVVTLTDTG 612 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+K YRAQ+RGG+G+ M++ D + LF+ +TH +L F++ G ++ VW + Sbjct: 613 YIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRLHWLNVWDV 672 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS ++G+ ++N+L L E++T ++P DE +LY+ AT G V++ + DF Sbjct: 673 PEGSSSSKGRPIVNMLELTDDEKVTAVLPIS-DEDYAKDLYIFMATADGTVKKTPIGDFK 731 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R+G A+ L D ++ ++D++L + G+ VRF +R GR + GVRG Sbjct: 732 NQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-GRAATGVRG 790 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L +G +VISM L+ GD E++T Sbjct: 791 MRLDEGQKVISM-------------------------LVCGDDEDVT------------- 812 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +LT +E G+GKR+ ++ R KGI + ++ N G +V+ Sbjct: 813 -------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN--GKVVSALL 857 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V +ND+IIL++ G L+R VNEIR+ R T+GV + S + ++V +ER+ E++ D A Sbjct: 858 VKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVTENDDGDNA 917 >gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 563/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] Length = 809 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 561/891 (62%), Gaps = 85/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIIDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LD+V+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPDRVITIIKEEMDEIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQRRGG+G G + D+DFV +L +TH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ ++ + N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN--YLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V ++DI++ TK G VRF S++R + R++ GVRG++L Sbjct: 634 NGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ + + ND Sbjct: 693 EGDEVVGAS----------------------------------RITND------------ 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRT + ++ R GKGI+ +++K N G L + VN + Sbjct: 707 -------QEVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKN--GKLAGLVTVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + I++++D G +IR V +I RAT GV I ++ +++++ ++ E Sbjct: 758 EDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDENAKIMTLALVQAEE 808 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 3/109 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S KG+ KR + +FR R G+G++ T V+ + + LV+ N +D + +++K Sbjct: 504 LITLSNKGYIKRLAQDEFRAQRRGGRGVQGTGVNDDDFVRELVST---NTHDHVYFMTNK 560 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 G + R+ EI R KG+ I + K + +V+ I + DE E+ Sbjct: 561 GRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN 609 >gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis] Length = 845 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/880 (40%), Positives = 537/880 (61%), Gaps = 85/880 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++ DL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A +DN D+ ++ LME ++ PDFPTG I G +G++ AY TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE + ++IVVTEIPY VNKA +++ IA+LV EKRI I++ DESDR+G R+V Sbjct: 243 AKAEIE-SGQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++ FV R +VV+R Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A LM+R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +IK ELL V+ + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RDEDFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N L+++ + + + D+ N+ YV+F TK+G +++ L + + Sbjct: 576 NSKGRAIQNFLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+VI M IC I L+ +S Sbjct: 695 DDDGQDEVIGM-------------IC------------------IKDLETES-------- 715 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ VSE+G+GKR+ D+R +NR GKG++ ++++ + G LV + V Sbjct: 716 ------------VMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 D + +++++ G IR+ V ++RI RAT+GV + + K Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEK 801 >gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] Length = 817 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/898 (41%), Positives = 555/898 (61%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G +N+ Y K A Sbjct: 1 MSQITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSA 60 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDAL RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 61 RVVGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARM 120 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L DL K TVDFR NYD S QEP VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 121 SKLSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNL 180 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++G V ++DNP+ +++ LM+ I+GPDFPTGA+ G G++ AY TGRGSI IRGV + Sbjct: 181 GELINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGKGLREAYLTGRGSIKIRGVVN 240 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R+ IV+TEIPY +NK++M+EKIA+LV E +I ++DLRDESDR+G RVV++LK Sbjct: 241 IEEKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLK 300 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +GA AD+I+N LY++T L+ F +NM+A+N +P+ L IL AF+ R EV++RRT++ Sbjct: 301 KGAIADIIINSLYKFTQLEQSFGINMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRF 360 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+K RAH+L GL IA+ N+DEVV+IIR S N + AR LM R Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDR--------------- 405 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+VQ +AIL++RL RLT L + + E + +I+ IL++ Sbjct: 406 -----------FELSKVQAQAILDMRLQRLTNLEHEKLLEEYAEILKKIEYFKSILANEE 454 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L G+I+ EL+ +KD T R+T +++ D++ ED I +D V+T+S GY+KR PLS Sbjct: 455 VLKGVIRDELVEIKDNYATERKTVLMDHNPDDIDIEDLIPDDDAVITLSRRGYIKRTPLS 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q+RGGKG +GV +D DF+ S H +L F+S G ++K KV ++P S AR Sbjct: 515 NYQKQKRGGKGIAGVQTKDGDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + N+L L + E I T M E E L+V TK G ++R+ ++ + +SG Sbjct: 575 GAHIANLLPLEKDETIATAMTMREFEEECFFLFV---TKSGMIKRSSIALYRNCRQSGIR 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D +++V+ + +++ +L T+ G +RF R GR + GV+GI+L GD+ Sbjct: 632 AVALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDARAM-GRVASGVKGIALRPGDE 690 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S +++GD EER Q Sbjct: 691 VVS-------------------------GVVTGD------------------EERVQ--- 704 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +LT+SE G+GKRT RI R GKGI + V+ + G ++ V+ D+++ Sbjct: 705 -----LLTISEGGYGKRTDIDQHRIQTRGGKGIISMRVT--TKTGKVLGSIMVSPEDEVV 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--EIVDEAESTE 910 L++ +IR+ V ++ + RAT+GV + + VV + ++++ EI E E E Sbjct: 758 LLTSGNKIIRMGVKDVSLVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSEPEGEE 815 >gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21] gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21] Length = 838 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/903 (41%), Positives = 540/903 (59%), Gaps = 91/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K A Sbjct: 16 VIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGDPPAA RYTE R+ Sbjct: 76 RIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDPPAAMRYTEVRM 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF PNYD S +EP VL ++ P +L+NG GIAVGMATNIP HNL Sbjct: 136 GKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +ID+PD ++ LM I+GPDFPTGA ILG +GI+ AY TGRG + +R +H Sbjct: 196 GEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGVSGIRQAYTTGRGVVKVRAKAH 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ +IVVTEIPYQVNKA ++E IA LV++K + I DLRDESDR+G R+VIEL+ Sbjct: 256 VEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLRDESDRKGMRIVIELR 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +++LN+LY++T +Q F + +AL P L IL ++ ++EV+ R+T+Y Sbjct: 316 SDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRILNLKEILVYYLEHQKEVITRKTRY 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA++RAH+L GL IA+ +LDEV+ IR S E AR L+ + Sbjct: 376 ELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLISKFG------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RLTGL R I +E + I +L+ Sbjct: 423 -------------LSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEH 469 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +++GI K + L VK PRRT IV +++ ED I ED+V+T+SH Y+KR L+ Sbjct: 470 KIMGIAKDDFLDVKKRFGDPRRTSIVPDAGEIDAEDLIAEEDIVITISHQSYIKRQALTN 529 Query: 556 YRAQRRGGKG---RSGVVMRDE-----DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +R Q RGG+G SG +++++ DF L + STH ++LFF++ G VY++K + +P Sbjct: 530 FRNQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIP 589 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 QA+G + N+L L + E+IT I+ S N ++ AT G +++ +S+F Sbjct: 590 EAGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEFKT 649 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 R+G IA+ LD ++++ V+ + +DILL T+ G +RF S +R GR + GVRGI Sbjct: 650 ARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESDVRPM-GRTAHGVRGI 708 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D ++SM S EG+ E Sbjct: 709 TLRHHDVLVSM----------------------------------------DSCEGDSGE 728 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTV+E G GKRT ++R+ R GKGI V+ N+ G +V V Sbjct: 729 ------------VLTVTEGGLGKRTDISEYRLQTRGGKGIINLKVT--NKTGDIVGSKLV 774 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ND+ I+L+S G +IR+ ++I SR +GV + K ++V ++ + + DE + Sbjct: 775 NDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGDKVAALAIV--DTVSDEEK 832 Query: 908 STE 910 TE Sbjct: 833 ETE 835 >gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] Length = 828 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/887 (41%), Positives = 538/887 (60%), Gaps = 85/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K A Sbjct: 6 ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GK+HPHG++A+YD+L R+ QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP NL Sbjct: 126 KPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG +AVI+NP+I++ +M+ + PDFPTG +I G G++ AY TGRG +VIR + Sbjct: 186 REVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAL 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L ++ +V R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNNLYKHTPMQETFGVIMLALVDGVPRVLNLKEMMHYYVKHRNEIVLRRTQ 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A RAH+L GL I + NLDEV+ IR SP+ TA+ LM+R Sbjct: 366 FDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q++AILE+RL RLTG+ R I E + I IL+S Sbjct: 412 ------------FGLSEIQSKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 QKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G + +DF+ +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L E+I + E Y+V AT +G V++ L DF R+G Sbjct: 580 GRSLANIMELRPTEQIKAYINIRNFEDPG---YIVMATTNGIVKKTPLDDFSNPRRTGIA 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ ++ DE+L ++ I+L VRFP + IR GR ++GV+GI+L +G++ Sbjct: 637 AITIEEGDELLDARLTDGDHQIILAKSSAYAVRFPENEIRSM-GRTAMGVKGITLDEGEK 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ISM +T+ + D++ Sbjct: 696 CISM---------------------------------VTTKRTDTA-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+D +I Sbjct: 709 -----LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKIGALVGLIDVNDDDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++ G + R V+++R+ R T GV + +++ ++ R+ +S+ Sbjct: 762 IITTNGIVNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSD 808 >gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] Length = 855 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/912 (40%), Positives = 556/912 (60%), Gaps = 99/912 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++ I ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K + Sbjct: 3 EQENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+S R L++G GNFGSVDGD AA RYT Sbjct: 63 KKSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A L+ D+GK+T+D++PN+DG +EPVVL AR+PN LVNG GIAVGMATN+P Sbjct: 123 EARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A+ NPDI + LM+ I GPDFPT ILGR+GI+ AY TGRGSI +R Sbjct: 183 PHNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSITMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE RE+I+V EIPYQVNKA ++EKIA+LVR+K+I I DLRDESDR G R+V Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R A+A VILN LY+ T +Q+ F VNM+AL G +P+ + + ++ ++EVV R Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGRPKTLNIKQAIYYYIEHQKEVVRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA RAH+L GL +A+ +LDEV+ IIR + + AR +L+ R Sbjct: 363 RTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFG--------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS QT+AIL++RL RLTGL R+ I E + I+E IL Sbjct: 414 -----------------LSTEQTQAILDMRLQRLTGLEREKIEGEYREVKALIEELRAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 LL II+ EL+ +K+ RRT I ++++EDED I DM++T++ GY+K + Sbjct: 457 GDEELLLDIIRNELIEIKERYGDARRTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P YR QRRGG+G+ G+ DEDFV L STH ++LFF++ G V++ K + +P S Sbjct: 517 PSDSYRTQRRGGRGKQGMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSR 576 Query: 612 QARGKALINILSLNQGERITTIMPF--------------PEDESSW---NNLYVVFATKH 654 A+G +IN+L +++GE++ T++P +DES L +VF TK Sbjct: 577 TAKGMPIINLLQIDKGEKVETMIPVDFNSYLANQTVAEETQDESEEVADEQLSLVFITKE 636 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G ++R+ LS + +IN++G A+ L+ DE+++V ++++L+ T+ G +RFP+ Sbjct: 637 GLIKRSPLSAYARINKNGLRAISLNETDELVTVRLAKSDDEMLIVTRQGMSIRFPLEGEV 696 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVR AI L + D + S Sbjct: 697 RSMGRTARGVR-------------AIRLKKEDDL-----------------------VVS 720 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + E+ Q +L ++EKG+GKRT+ FR R G GI + Sbjct: 721 M----------------EIVRTTQDVLIITEKGYGKRTAMEQFRTQGRGGSGIIGIKTDR 764 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G +V + V+++D I+L+++ G IR+ I R+T+GV + + + +R+ ++ Sbjct: 765 ----GTVVGMRVVDEDDDIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIEEGDRLATI 820 Query: 895 ERIRESEIVDEA 906 ++++ E+ +E+ Sbjct: 821 AKLKKDELEEES 832 >gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1] Length = 852 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/875 (41%), Positives = 537/875 (61%), Gaps = 91/875 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ +K + KCARI Sbjct: 13 VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+ +IY+AL ++AQ+W+ R L++G GNFGSVDGD AA RYTE RL K Sbjct: 73 GDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG GIAVGMATNIP HNL E Sbjct: 133 SMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192 Query: 199 VDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 ++ + +IDN + ++D +M+I++GPDFPTGA ILGR GI +AY TGRG I +R + Sbjct: 193 INAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRAI 252 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE + + +IVVTE+PY VNK+ +++ + +LV+ KRI I D+RDES R+G RVVIE Sbjct: 253 TEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVIE 312 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L++ +A+VILNQL+++T LQ F M+AL P+ + +L ++ +E+VV RRT Sbjct: 313 LRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNIKDMLTYYLKHQEDVVTRRT 372 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 KY LNKA +RAH+L G IA+ N+DEV+ IIR S N A+ +L++R Sbjct: 373 KYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------- 419 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q AI+++RL LTGL R+ I NE N L +I E +IL+ Sbjct: 420 -------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELIAKIAEYKEILAD 466 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++LLG+IK EL ++ D+ RRT I D+ DE+ I RE++V++++ LGY+KR+P Sbjct: 467 ENKLLGVIKTELAAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPK 526 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 ++ Q RGGKG G+ D D + ++F+ +TH ++FF+++G VY+ K + +P A Sbjct: 527 DTFKVQNRGGKGIKGMNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNA 586 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG A++N+L L GE++T I+P + ++ Y++ ATK+G V++ K+ F I ++G Sbjct: 587 RGVAIVNLLQLLPGEKVTAIIPI----AGFDKKYLMMATKNGIVKKTKIEAFENIRKTGL 642 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L+ DE++ V+ + END+ L T G C+RF +R GR S+GVRGI KGD Sbjct: 643 AAITLNEGDELIEVKATSGENDVFLVTAKGMCIRFNEECVR-DTGRTSMGVRGIRCDKGD 701 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI+M + D DE Sbjct: 702 EVIAMQL----DVQGDE------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+ KG GKRT +F R GKG++ +++ + G +V+ V ++ I Sbjct: 715 ------MLFVTTKGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHDI 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++++++G +IR+ ++I + R T GV + + KD Sbjct: 767 MMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKD 801 >gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] Length = 840 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/892 (42%), Positives = 539/892 (60%), Gaps = 80/892 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ +EMQ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+ ++ Y KCA Sbjct: 4 IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDAL R+AQD+S R LLI+G GNFGSVD DPPAA RYTECRL Sbjct: 64 RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 LL DL +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP H Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG A++ NP++ + LM I GPDFPTG ILG++GI+ AY TGRGSI +RGV+ Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE IV+TE+PYQV KAA++EKIAELV +KRI I+D+RDESDR G R Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN L++ T LQ+ F NM+AL +P L L+ F+ FR EV+ Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KAR+R H+L+G+ +A+ANL+ V+ +IR + + +AR EL+ R Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNR---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q AIL+++L RLTG+ I E L +I + D+ Sbjct: 414 ----------------FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ II+ ELL+ K L+ PRRT I + +++D D I ++MVV V+ GY+KR Sbjct: 458 LERRERIDQIIRDELLTAKQRLNDPRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+ + QRR +G+SG MR++D V H +VLFF++ G VY + +++P GS Sbjct: 518 LPVDTFDRQRRATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + E++T+I+P E S + ++V T+ G +++ L+ F + Sbjct: 578 RTAKGTPVVQLLPIPIEEKVTSIVPVQEFAS---DEFLVMLTRTGFIKKTALAAFANLRA 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ DE+ V E+DIL+ ++ G +RF ++ GR + GV+ + L Sbjct: 635 NGLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMEL 694 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD+++SM I +S ++R ER Sbjct: 695 RKGDELVSMDI-----------------LSCEQR------------------------ER 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALVAVFPVN 848 + ++L V+ GFGKR +FR NR G G+ AT K + G L A+ V+ Sbjct: 714 AEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIAT---KFRDQGDELAALRVVS 770 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D++++V+ +G +IR EI SRA GV + +D+ +V V + ES Sbjct: 771 CEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVPES 822 >gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] Length = 812 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/881 (41%), Positives = 548/881 (62%), Gaps = 96/881 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE+K+G Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY++T LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I NE + IKE ++L+ S++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERIT---TIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE+++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVSDTIVIKEFLPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K+ D+I+ V E T+E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800 >gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra] gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra] Length = 861 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/891 (39%), Positives = 553/891 (62%), Gaps = 86/891 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +V+ Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +++ +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808 >gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] Length = 856 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/891 (39%), Positives = 553/891 (62%), Gaps = 86/891 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +V+ Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +++ +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ +I+ Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808 >gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110] gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110] Length = 841 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/888 (41%), Positives = 547/888 (61%), Gaps = 87/888 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 + + I ++I DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ + Y Sbjct: 2 QREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSY 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ GEV+GKYHPHG++A+YD++ RM Q++SLR L++GQGNFGSVDGD PAA RYT Sbjct: 62 KKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + + +L DL K+T+DF PN+D S +EP+VL A +PN+L+NG GIAVGMATNIP Sbjct: 122 EVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+NP+I ++ LM I+ PDFPT +I G G+++AY TGRG IV+R Sbjct: 182 PHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIYGYNGVRDAYLTGRGKIVLR 241 Query: 252 GVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E T + RE I++TE+PYQVNKA ++EKIA LV++K++ IADLRDESDR G RV Sbjct: 242 AKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRV 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A V++N+L++ T LQ F V M+AL G P TL ++ +V R EV++ Sbjct: 302 VIELKKDAVTQVVINRLFKLTQLQETFGVIMLALVGGIPRVLTLKETIQYYVNHRHEVIL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL I + NLDE++ IR SP+ ETAR LM Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLM------------ 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T LS++Q +AIL++RL RLTGL R I +E L I+ I Sbjct: 410 --------------ATFSLSDLQAKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ + +IK+ELL +K RRT+IV D ED I ED+V+T++H GY+KR Sbjct: 456 LANEKLQMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDMIAEEDVVITITHQGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q RGG+G SGV R++DF+ +FI STH +LFF+S G Y KV +P Sbjct: 516 FPVSGYRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+++ N++ GE+I + E + ++V ATK+G +++ LS++ R Sbjct: 576 RTARGRSITNLIEFATGEKIKASINVKEFNDTQ---FIVMATKNGTIKKTPLSEYSNPRR 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ + DE++ + I+L G VRFP +R GRNS+GV+G S++ Sbjct: 633 SGIIAINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPM-GRNSIGVKGASIS 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + +ISM +++ +ND++ Sbjct: 692 GDEAIISM---------------------------------VSTPRNDAT---------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVND 849 +L +++ G+GKR++ D+R++ R G+ K NE +G LV + VND Sbjct: 709 ---------LLAITDNGYGKRSAIEDYRMTKRGANGVITL---KANEKVGKLVDMLEVND 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + II++++KG + R + +IR+ R T GV + +D+ V +V R+ Sbjct: 757 GEDIIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVARV 804 >gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7a] Length = 833 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/873 (42%), Positives = 530/873 (60%), Gaps = 87/873 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++S+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q G N K+VK ARI G+VMGK Sbjct: 33 MEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSARIIGDVMGK 92 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIYD++ R+AQDW++R L++GQGNFGS+ GDPPAA RYTE RL K A LL Sbjct: 93 YHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARLDKPAEELLA 152 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TVDFR N+DGS QEP+VL A+ PN+L+NG GIAVGMAT+IPTHNLGE+VD V Sbjct: 153 DIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNLGELVDATVE 212 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +IDNP+ +D L++ ++GPDFPTGA++ G + AY TGRGS+ IR V++IE+T R Sbjct: 213 LIDNPEATVDDLLKHVKGPDFPTGAIVYGGAPMWQAYQTGRGSVTIRAVANIEETKRGRH 272 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +IVVTE+PY VNKA ++EKIAELV+EK+I I+DLRDES R RVVIELK+ A +L Sbjct: 273 RIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIELKKDAYPKKVL 332 Query: 325 NQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 NQLY+ T+LQ+ F NM+AL +G +P L IL F+ R VV RRT++ L KA R Sbjct: 333 NQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRTEFELKKAEAR 392 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G IA+ ++DEV++ IR S E A + L+ R Sbjct: 393 AHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIAR----------------------- 429 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 LSE+Q +AIL ++L RLTGL R+ I NEL L I++ IL+ +L IIK Sbjct: 430 ---FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQEILNIIKN 486 Query: 504 ELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 EL+ +K++ RR++++ L DE+ I ED VV ++ Y+KR S YR Q RG Sbjct: 487 ELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLASDYRKQNRG 546 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG+ G+ ++ D + + TH +LFF++ G V++ K + +P S QA+G A +N+L Sbjct: 547 GKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKGVAAVNLL 606 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L E+IT I+ F +D + ++ Y+ AT G +++ + D+ I +G IA+KLD D Sbjct: 607 QLQPEEKITAIIKFEKD--AKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGD 664 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E+ ++ + +DIL++T GQ +RF R GR + GVRG+ L D V+ M I Sbjct: 665 ELRWIKRSSGNDDILISTSAGQAIRFNEKDARSM-GRAARGVRGVRLRPNDSVVGMDIA- 722 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 ND ++ +L Sbjct: 723 ----------------------------------ND------------------DRTLLV 730 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGT 861 +SE G+GK T +F R G GI+A V+ + G +++V + +D + +LVS +G Sbjct: 731 ISENGYGKATKISNFPSHKRGGVGIKAAVVTA--KTGPIISVKTIQQDDIEALLVSTQGQ 788 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 IRV + +I + R T+GV I T+ D+ V SV Sbjct: 789 TIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASV 821 >gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 850 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/894 (41%), Positives = 557/894 (62%), Gaps = 86/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV +K Y K A Sbjct: 20 ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L++G GNFGSVDGD AA RYTE RL Sbjct: 80 RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++DNPD LME++ GPDFPTG V++G++GI+ AY TGRGSI++R Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKVE 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR+G RVVI+++ Sbjct: 260 IEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 319 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ FS NM+A+ P +L IL+ ++ + EV+ RRTKY Sbjct: 320 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTKY 379 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE+++IIR S E A+ +L+ Sbjct: 380 ELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I E N L +I++ ILSSR Sbjct: 424 ----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRD 473 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +ELL ++ + RRT ++ G +L +EDED I ED++V+++H GY+KR+P + Sbjct: 474 RVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTT 533 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + D+DFV L STH +LFF+ G VY+ K + +P A+ Sbjct: 534 EFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 593 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L++N GE+I ++ + ++ ++F T +G V+R +SDF I +G I Sbjct: 594 GIPIVNLLNINSGEKIEAVINVSDRKNDVQK-DLLFVTLYGTVKRTPVSDFANIRSNGLI 652 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++++ Q ++++ T LG + F S +R GR++ GVRGI L + D Sbjct: 653 AIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSATGVRGIRLRENDY 711 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ A VL+ D++ Sbjct: 712 VVG-ADVLNPDSE----------------------------------------------- 723 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + +SEKGFGKRT + D+ I R GKG++ ++++ N G L + V+ N+ I+ Sbjct: 724 -----VFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDIM 776 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 L++DKG +IR + ++ R+T GV + +D +V ++ ++ + E DEA S Sbjct: 777 LITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASS 828 >gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7] Length = 849 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/900 (41%), Positives = 542/900 (60%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + + M+ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 IHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS R L++G GNFGS+DGD AA RYTE RL Sbjct: 69 RIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + ++ D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E +DG + +ID N + ++ LMEII+GPDFPTGA+ILG+ GI AY TGRG + + Sbjct: 189 RETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRTGRGKLKV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE R +IV TE+PY VNKA ++EKIAELV++KRI I+DLRDES R+G RV Sbjct: 249 RAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSREGLRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A+ +V+LNQLY++T LQ + V M+AL +P L +L+ ++ +EEVV Sbjct: 309 VIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA +RAH+L GL IA+ ++DEV+ IIR S N A+ LM+ Sbjct: 369 RRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLME----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 T L+EVQ +AI+++RL LTGL R+ I NE N L I E I Sbjct: 418 ---------------TFGLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LLG+I++E+ ++D+ R+T + ++ ED I RE+ V+ ++ LGY+KR Sbjct: 463 LADEKLLLGVIREEIKLIRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMTQLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGG+G G+ DED +T+L + +TH +LFF++ G V++ K + +P S Sbjct: 523 MTMDNFRSQNRGGRGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ALIN+L L GE++T +P E N+ Y+ ATK+G V++ + ++I + + Sbjct: 583 RIARGTALINLLQLEPGEKVTATIPL---EKYENDKYLFMATKNGMVKKTSIMEYINVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G +A+ L DE++ V+ + + I L ++ G + F +R GR S+GV G+ L Sbjct: 640 TGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRA-TGRTSMGVIGMDLD 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D ++ M + +A Sbjct: 699 ADDLIVGMQVSSQGEA-------------------------------------------- 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG GKRT +F + NR GKG++ ++ ++ G +V V VN Sbjct: 715 ---------VLIVSEKGLGKRTMLEEFNVQNRGGKGLKCYKIT--DKTGLVVGVKCVNAE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 D++++++ G +IR+PV I I R T GV + + V S+ +IRE DE S E Sbjct: 764 DELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVASIAKIREDMKDDEETSDE 823 >gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] Length = 834 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/881 (41%), Positives = 543/881 (61%), Gaps = 88/881 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K ARI GE Sbjct: 9 IEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL++G GNFGS+DGD AA RYTE R+ K ++ Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEARMAKISN 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 L+DD+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE++D Sbjct: 129 ELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELID 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDNP++ LME I+GPDFPTG +I G+ GI++AY TGRG + +RG IE+ Sbjct: 189 GILALIDNPELTPLDLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGKVEIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I++ EIPYQ+NK+ ++E+IA+LV++KR+ I DLRDESDR G RVVIE+K+G Sbjct: 249 NGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 ++ILN+LY+YT LQ+ F + M+AL P L IL ++ R EVV RRTK+ L+KA Sbjct: 309 ELILNKLYKYTELQNTFGIIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRTKFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ IIR S + AR L+++ Sbjct: 369 EKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 S+VQ RAIL+++L RLTGL R I E + I E +ILS S++ I Sbjct: 411 --------FSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+ELL +K++ + RRT I +++ ED I E++++T+++ GYVKR+ +S Y+AQ+ Sbjct: 463 IKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQK 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG + ++DFV + S +++ F++ G V+ KV+ +P S Q+RGK + N Sbjct: 523 RGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSN 582 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 I+ + E+I ++ D S N VVF TK G +++ L +F IN SG A+KL Sbjct: 583 IIRTREDEKIRAVIK-TRDFSKENE--VVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKE 639 Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 D+I+ V E QE + + TK G +RF +R GR+++GV+ I+L GD ++S Sbjct: 640 EDDIIYVGLIEKIDQEQ-VFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRPGDSIVS 697 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 ++ K +E Sbjct: 698 ALLI----------------------------------------------------KDEE 705 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILTV+E G+GKRT ++ + RSGKG+ ++ + GA+V+V PV + ++++ ++ Sbjct: 706 GSILTVTENGYGKRTRIDEYPLQARSGKGV--INIRCNAKTGAVVSVLPVTEGEELMAIT 763 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +IR+P++ I + RAT+GV+I E+VVS+ R++ Sbjct: 764 SSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVK 804 Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 91/179 (50%), Gaps = 26/179 (14%) Query: 745 DADYDERICYMKHMSAQRRLISGDT-------EEITSLK---NDSS---VEGNISEERCQ 791 DA+Y+E K+++ R ++S D+ EE+ LK ND+ +E E + Sbjct: 436 DAEYEE---IEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPE 492 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E ILT++ KG+ KR ++ R GKG+ + + E + ++ ++ D Sbjct: 493 DLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQNTI---EDDFVESIESASNLD 549 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIR----ESEIV 903 +++ +++G + + V EI S+ ++G + I T +DE++ +V + R E+E+V Sbjct: 550 TLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSNIIRTREDEKIRAVIKTRDFSKENEVV 608 >gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204] gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204] Length = 860 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/892 (41%), Positives = 548/892 (61%), Gaps = 90/892 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT +T E++ +L Y+++VI+ RA+PD+RDGLKPV RRIL+ M +M + +K Y K A Sbjct: 19 ITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSMHEMNIGPDKAYRKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ W++R +L++G GNFGS+DGD PAA RYTE R+ Sbjct: 79 RIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSMDGDDPAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L DL KDTVD NYDG +EP VL +RYPN++VNG GIAVGMATN+ HNL Sbjct: 139 SKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSSGIAVGMATNVAPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +DG AV+DNP+I LM ++GPDFPTGA ILGR+GI+ A+ TGRGS+++R + Sbjct: 199 GETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYILGRSGIRQAFETGRGSVIMRAKTK 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + +IVV E+PY VNKA+++E+IA LVR+K I I DLRDES+ G RVVIEL+ Sbjct: 259 IEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDLRDESNMDGIRVVIELR 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + DV+LNQLYR T LQS F VN V L P + ++I +LK ++AF++EV+VRRT++ Sbjct: 319 KDIQPDVMLNQLYRSTPLQSNFGVNNVVLFNGVPRQASMIDLLKGYIAFQDEVIVRRTQF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IAV NLD ++ IR S +P A LM+ Sbjct: 379 DLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLME---------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q +AIL+++ RLTGL R+ I NE L I+I + DILS+ + Sbjct: 423 ----------GFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDLLIKIADFQDILSNHA 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L II+ EL VK + + PRR+ I++ + D+EDED I E++++T+S GY+KR+ Sbjct: 473 RVLQIIRDELSEVKAKFNDPRRSEIIDAIADVEDEDLIPVENIIITLSSNGYIKRLTTDT 532 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG G+ + +D + +STH +L F+ G VY+ K + +P S ++G Sbjct: 533 YHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYRIKGYNVPEFSRTSKG 592 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 IN++S+ + E I ++P+ +D S ++ F TK G ++R ++ IN++GKIA Sbjct: 593 IPAINLISMEKTENIRALVPYSQDHDSK---FLFFVTKQGIIKRTTFDEYENINKNGKIA 649 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 +KL+ DE+ V + +I++ G+ VRF + +R GR + GV+G ++ G V Sbjct: 650 IKLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPL-GRTARGVKGFNV-DGGYV 707 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 I +A +++EG Sbjct: 708 IGLA---------------------------------------TNLEG------------ 716 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++ILT++E GFGK++S D+R++ R +G++ +V++ + G LV + V ++ ++ Sbjct: 717 --EYILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQ--KSGKLVCMRAVRGDEDCMI 772 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRESEIVD 904 ++ G +IR+ + ++ + SR+ +GV + + KD+ V SV E +SE+VD Sbjct: 773 MTAGGIVIRISLKQVSVYSRSAQGVKVIN-VKDDIVSSVAILEPEEDSEVVD 823 >gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] Length = 814 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/888 (40%), Positives = 553/888 (62%), Gaps = 90/888 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I +V + +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R L +GQGNFGS+DGD AA RYT Sbjct: 63 RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ KDTVDF PN+D EPVVL +R+PN+LVNG GIAVGMATN+ Sbjct: 123 EVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D C+A + +P+I ++ L +II GPDFPTGA ILG+ GIK+AY+TGRG + +R Sbjct: 183 PHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 V IE +RE+IV+TEIPYQVNK+ ++EKIA+LV++KRI I+D+RDESDR+G R+V Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ++A+++LN LY+YT L++ F + +AL P+ L +++ ++ +++VV R Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + + ++ ++ Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q++AIL+++L RL+GL D + E L I L IL Sbjct: 412 ---------------FGLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +S LL +I E+ +K++ RR++I+ EG +D+ E+ I +ED+++T++ GY+K Sbjct: 457 NSEENLLNLIIDEMEEIKEKFSDDRRSKIIPDEGEIDI--EELIEKEDVLLTLTKDGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P+ Y+ Q RGGKG + ++ DF+ + +TH +LFF+S G VY K + +P G Sbjct: 515 RLPIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEG 574 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S Q+RG A+INIL L GE+IT +M E +V TK G +++ +F I Sbjct: 575 SRQSRGIAIINILKLESGEKITEMMTLSELNKDSQ---IVLQTKMGTIKKTDAENFTNIR 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+ L D ++SV +E +++++TK G ++F + +R GR + GVR I L Sbjct: 632 KNGIIAISLKEYDRLISVRQIDKEEELIISTKNGMTIQFNSADLRSM-GRIAQGVRAIKL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+V+SM I GD Sbjct: 691 DKDDEVVSMN-------------------------IKGD--------------------- 704 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++L V+E +GK+TS +F+ NR GKG++ V++ + G ++ PV+ Sbjct: 705 -------ETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKIIDTLPVDL 755 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896 ++ I++VS G +IR+ V +I I R T GV + + T +++R+VSV + Sbjct: 756 DNDIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTK 803 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 6/110 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +EL KE +LT+++ G+ KR +++ NR GKGI A + E + + N Sbjct: 494 IEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIAAGNTK---EGDFIKKIKTTNT 550 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ ++ + G + + E+ SR ++G+ I + K E S E+I E Sbjct: 551 HEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLE---SGEKITE 597 >gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] Length = 826 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/901 (41%), Positives = 545/901 (60%), Gaps = 92/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID+ + ++ +++I++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 KEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G R+ Sbjct: 249 RAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R A+A+VILNQLY++T +Q F V M+AL +P L+ +L ++ +EEVV Sbjct: 309 CIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNEPRVMNLLDMLNHYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S + A+ L+ Sbjct: 369 RRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLI------------ 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+EVQ +AI+++RL LTGL R+ + E L I E I Sbjct: 417 --------------AAFDLTEVQAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E++ ++D+ RRT I D+ ED I RED+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEIIVIRDKYGDERRTAIGFDEYDISMEDLIPREDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ +ED++ DLF+ STH V+FF++ G VY+ K + +P Sbjct: 523 MTVDTFKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT I+P E Y+ ATK G V++ ++D+ + + Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPIKE---YVQGEYLFMATKKGLVKKTPITDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E DI+L TK GQC+RF +R GR S+GVRG++L Sbjct: 640 TGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVR-STGRTSMGVRGMNLG 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ M + + + LI +SE+ Sbjct: 699 DRDEVVGMQL----------------NTQGEHLLI-------------------VSEKGM 723 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + +F S+ GK Y +I+ ++G +V V V+++ Sbjct: 724 GKRTEMSEF---TSQNRGGKGVKCY--KITEKTGN---------------VVGVKAVSED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAES 908 ++I++++ +G +IR+ N I + R T GV + + DE+V S+ ++RE SE+ + AE Sbjct: 764 NEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIAKVREASSELEENAEE 823 Query: 909 T 909 T Sbjct: 824 T 824 >gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] Length = 828 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R LL++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + R Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q+ Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 >gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] Length = 817 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + I++++D G +IR V I R T+GV + R+V+ + EI Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810 >gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10] gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10] Length = 840 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/896 (41%), Positives = 548/896 (61%), Gaps = 91/896 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +DE E+ I + I EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M G Sbjct: 2 ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 K Y K GE + YHPHG+AA+YD+L RMAQD+SLR L++G GNFGS DGD AA Sbjct: 62 EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K + +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNLGE +DG AV+DNP+I +D LM+ I+GPDFPT A I+G+ GI+ A+ TGRG Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKRGIREAFKTGRGK 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306 +V+R + IE+ G+R +I++TEIPY VNKA ++EKIA+LV++KRI I+ ++DES R+ Sbjct: 242 LVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGREE 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAF 361 R+VI+LKR A+ +V+LNQLY+ T LQ FSVNMVA+ Y+P L I+ + Sbjct: 302 PVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDYY 361 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 +A +E+V+ RRTK+ L+KA RAH+L GL A+ +LDEV++ IR S A+ L +R Sbjct: 362 IAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSERF 421 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S+ Q +AI+++RL RLTGL R+ + E N L Sbjct: 422 G--------------------------FSDKQAQAIVDMRLGRLTGLEREKLETEYNELL 455 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +IK D+L++ + IIK EL +K++ RRT+I +++ ED I E+ V+T Sbjct: 456 EKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQEEESVIT 515 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++H GY+KR+P Y++QRRGGKG G+ R+EDFV +LF+ STH ++FF++ G VY+ Sbjct: 516 MTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRL 575 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P QA+G A++N+L L+ E++TT++P E + LY++ ATK+G V++ Sbjct: 576 KAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYKEG---LYLIMATKNGLVKKTD 632 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L ++ I + G A+ L D+++ V+ DI+L+T G +RF + R GR S Sbjct: 633 LMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPI-GRVS 691 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+GI L +GD VI M +C T+ T Sbjct: 692 QGVKGIELDEGDFVIGM------------EVC---------------TDNTT-------- 716 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L V+E GFGKRT ++++ R GKG+ +++ + G Sbjct: 717 ------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGKS 756 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + V++ D I+L+S G++IR+ V+EI I RAT+GV + ++ VVSV R+ Sbjct: 757 IGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVSVARM 812 >gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 832 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V I DEM+N Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M QMG+ +K + K ARI Sbjct: 16 NVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPFRKSARI 75 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+GKYHPHG++++YDA+ RMAQD+S R + + GQGNFGSVDGD AA RYTE R+ + Sbjct: 76 VGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYTEARMSR 135 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + +L D+ K+TVDF N+DGS QEPVVL +R+P++LVNG GIAVGMATNIP HNLGE Sbjct: 136 ISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIPPHNLGE 195 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+DG +A ID+PDI +D LM I+GPDFPT VILG++GI+ AY TGRG I IR ++ Sbjct: 196 VIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREAYETGRGRIKIRSKVAVK 255 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316 + ++QIV++EIPY VNKA +++KIAELV++KR+ I D+RDE+D + G R+V+ELKR Sbjct: 256 NMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIRIVVELKR 315 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 +A ++LNQLY++T LQ + V +AL +P+ +L IL +VA ++E++VRRTK+ Sbjct: 316 DTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQILHYYVAHQKEIIVRRTKFD 375 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA RAH+L G IA+ N+DEV++IIR S + + A+ LM R Sbjct: 376 LKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDR---------------- 419 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 L+++Q +AIL++RL RLTGL R+ I E L +I E IL+ Sbjct: 420 ----------FALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKL 469 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +LGIIK EL +KD+ RRT + D + ED I E++VVT++H+GYVKR+ Y Sbjct: 470 VLGIIKDELTEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAADTY 529 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 RAQ RGGKG S + R+ DF+ +F STH +LFF++ G Y+ K + +P+G +RG Sbjct: 530 RAQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGT 589 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A++NIL L+ E ITT++ E+ + Y V AT+HG +++ ++D+ ++G + Sbjct: 590 AIVNILQLDPDESITTMIQVKTFEA---DKYFVMATRHGLIKKTAMTDYESSRKNGINGI 646 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE++ V+ D+++ T LG +RF + + GR S+GVRGI L D V+ Sbjct: 647 NLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNA-TGRMSMGVRGIGLRADDHVV 705 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 M +++ AD + +C + +R S D + Sbjct: 706 GMDLLI-ADNNV---LCVAEKGYGKR--TSADQYRV------------------------ 735 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +K GK +Y + + ++G LV + D +I+++ Sbjct: 736 --------QKRGGKGIQTY--KCTKKTGN---------------LVGFSVLEDGGEIMMI 770 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ G +I++ ++I R+T+GV + DER+ ++ +++ E +D+ + Sbjct: 771 NNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQNEEPLDDVD 821 >gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] Length = 850 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/894 (41%), Positives = 556/894 (62%), Gaps = 86/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV +K Y K A Sbjct: 20 ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L+ G GNFGSVDGD AA RYTE RL Sbjct: 80 RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGDGAAAMRYTEARL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++DNPD LME++ GPDFPTG V++G++GI+ AY TGRGSI++R Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYETGRGSIILRAKVE 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR+G RVVI+++ Sbjct: 260 IEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 319 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ FS NM+A+ P +L IL+ ++ + EV+ RRTKY Sbjct: 320 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLEHQVEVITRRTKY 379 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE+++IIR S E A+ +L+ Sbjct: 380 ELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I E N L +I++ ILSSR Sbjct: 424 ----------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSSRD 473 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +ELL ++ + RRT ++ G +L +EDED I ED++V+++H GY+KR+P + Sbjct: 474 RVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSLTHNGYIKRLPTT 533 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + D+DFV L STH +LFF+ G VY+ K + +P A+ Sbjct: 534 EFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 593 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L++N GE+I ++ + ++ ++F T +G V+R +SDF I +G I Sbjct: 594 GIPIVNLLNINSGEKIEAVINVSDRKNDVQK-DLLFVTLYGTVKRTPVSDFANIRSNGLI 652 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++++ Q ++++ T LG + F S +R GR++ GVRGI L + D Sbjct: 653 AIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSATGVRGIRLRENDY 711 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ A VL+ D++ Sbjct: 712 VVG-ADVLNPDSE----------------------------------------------- 723 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + +SEKGFGKRT + D+ I R GKG++ ++++ N G L + V+ N+ I+ Sbjct: 724 -----VFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLSGLTTVSGNEDIM 776 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 L++DKG +IR + ++ R+T GV + +D +V ++ ++ + E DEA S Sbjct: 777 LITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQE--DEASS 828 >gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS] gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes] gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS] gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] Length = 828 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + R Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q+ Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 >gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311] gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311] Length = 811 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + I++++D G +IR V I R T+GV + R+V+ + EI Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810 >gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672] gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672] Length = 805 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/888 (41%), Positives = 546/888 (61%), Gaps = 87/888 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +EKGI +SI D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MG+ NK Y Sbjct: 4 KEKGIIDISIEDSIKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GK+HPHG++A+YD L R+AQD+S+R L++GQGNFGSVDGD AA RYT Sbjct: 64 KKSARVVGDVIGKFHPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K LL D+ KDTVDF PNYDGS +EP+VL R PN+L+NG GIAVGMATNIP Sbjct: 124 EVRMAKITDELLLDIDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVD + IDNP+ LD +++ I+GPDFPT +++G + +K AY TGRG+I IR Sbjct: 184 PHNLGEVVDALIHRIDNPESTLDDILKFIKGPDFPTAGILMGVSDLKTAYLTGRGAIKIR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + I++ +EQIV+TEIPYQVNK++++EKIAELVR+K IV I +LRDESDR G RVV Sbjct: 244 ARAEIQQLKSGKEQIVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+K+G DVILNQLY++T ++ F +N VAL +P+ L+ IL F+ R +V R Sbjct: 304 IEIKKGELPDVILNQLYKFTQMEVTFGINTVALVNGRPQTLPLLKILDEFIGHRITIVTR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+LL KA +R H+L GL AV N+DEV+ II+ S + + A+ +L+ R Sbjct: 364 RTKFLLRKAEERLHILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDR----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S++Q AIL+++L +LTGL + + E I+ IL Sbjct: 413 ---------------FSFSDLQVSAILDMKLQKLTGLEIEKLVEEYKETLKNIEYYKSIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ L+GIIK ELL +KD+ RRT IV ++ ED I +MVVT+++ GY+KR Sbjct: 458 NNHQILMGIIKDELLEIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRT 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PLS + +Q+RGGKG+S + + EDF+ L + S H+ +LFF++ G ++ KV+ LP +P Sbjct: 518 PLSFFSSQKRGGKGKSATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAP 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 RG+ + N+LS +QGE I +++ + + ++ Y+ TK+G V++ + +F + RS Sbjct: 578 GTRGRHISNLLSFSQGEYIASVVTLSDLD---HDKYIFMCTKYGIVKKTAVEEF-KSGRS 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G +AMKL DE++S T ++I + T+ G+ ++F +R GR + GVRGI+L + Sbjct: 634 GIVAMKLRENDELVSTVITTDNDNITIATRNGKTIQFESKEVRDM-GRTATGVRGITLEE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+SM + ++G +T N +S+ R Q Sbjct: 693 DDYVVSMEV------------------------LTGAPFILTVTSNGYGKCSLVSDYRIQ 728 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 S G G + S +++ ++G +V V D Sbjct: 729 ------------SRGGKGLKLS----KVTPKTG---------------PIVGAKQVKLED 757 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++L+S G +IR+ V++I + R T+GV + S A DE +VS ++E Sbjct: 758 DVMLMSKTGKIIRIAVSDIPVLGRDTQGVKLMSVADDE-IVSFAIVKE 804 >gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 842 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/913 (41%), Positives = 547/913 (59%), Gaps = 85/913 (9%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD E I S + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 2 SDNESTARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTA 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S+R L++G GNFGSVD DPPAA Sbjct: 62 DRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAA 121 Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTECRL A LL D+ +TVDF NYDGS QEP+VL AR P +L+NG GIAVGM Sbjct: 122 MRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E+VDG +A+I NP++ LM+ I PDFPTGA+I+G+ GI+ AY TGR Sbjct: 182 ATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRS 241 Query: 247 SIVIRGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 SI +RGV+ +E R+ I++TE+PYQ NKAAM+EKIAELV EK++ IAD+RDE Sbjct: 242 SITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G RVVIELKR A V+LN LY+ T LQ+ F VNM+A+ +P TL L+AF+ Sbjct: 302 SDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFL 361 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FREEV+ RRT+Y L KA +R H+L G +A+ LD V+ +IR + + TAR EL Sbjct: 362 DFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL----- 416 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + LSE Q IL+++L RLT L + I+ E L Sbjct: 417 ---------------------QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVR 455 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + DIL+ R R++ II +EL +K +PRR+R+ ++ +D I + V+ + Sbjct: 456 QIADLRDILARRERVMQIISEELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFL 515 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+KR+ L ++ Q R +G++G ++++D + F +H ++LFF++ G VY Sbjct: 516 TEQGYIKRMGLEEFQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLP 575 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 ++P GS ARG A++ +L + + ER+T+++P F +DE Y+V T+ G +++ Sbjct: 576 AHQIPQGSRAARGSAIVQLLPITREERVTSMVPVSQFSDDE------YLVMLTRGGYIKK 629 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFA 717 LS F + +G IA+ L+ DE+ V +D+++ T+ G +RFP +R Sbjct: 630 TALSAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPL- 688 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR + GVR I+L GD ++SM I+ Sbjct: 689 GRATRGVRAITLNAGDDIVSMDII------------------------------------ 712 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 S E ++ ER E KL ++L ++++G GKR++ +FR NR GKG+ AT + ++ Sbjct: 713 --SAESVMAAEREGE-KLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKFRQASD 769 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L A+ VN D+I+LV+ +G ++R I SR GV++ ++ +V V + Sbjct: 770 --ELAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVT-V 826 Query: 898 RESEIVDEAESTE 910 + +V E E++E Sbjct: 827 VPAALVAEEETSE 839 >gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066] gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066] gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03] Length = 811 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/892 (42%), Positives = 551/892 (61%), Gaps = 84/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV D+ STH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I T++ DE+S NN ++VF T+ G V+R K ++F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEASDNN-HLVFVTRQGLVKRTKEAEFKNIRQ 634 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+KL DE+++V +I++ TK G VRF IR + R + GV+G++L Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ A + TE+ Sbjct: 694 DGDQVVGAAAI---------------------------TED------------------- 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++EKG+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 708 -------QEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + I++++D G +IR V I R T+GV + R+V+ + EI Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEI 810 >gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065] Length = 831 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/889 (39%), Positives = 551/889 (61%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKA 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +V+ Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +++ +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01] gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01] Length = 805 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/891 (42%), Positives = 534/891 (59%), Gaps = 94/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK A Sbjct: 4 VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMGKYHPHG+AAIYDALAR+AQ W+LR L++GQGNFGS+DGDPPAA+RYTE RL Sbjct: 64 KIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ K+TVDFRPNYDGS +EP VL + PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD VA+IDNP I L+ +M + GPDFPTG L R GI+ AYATGRGS+ +R Sbjct: 184 SEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGK-LSRKGIQEAYATGRGSLKVRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G R +VVTEIPYQVNKA ++ +IA LV+ K+I DI LRDESDRQG R+ IELK Sbjct: 243 IEE-KGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGAS V+LNQLY++T+LQ+ F+VN++A+ +P+ L+ +++ ++ R+EVV RR+ + Sbjct: 302 RGASPQVVLNQLYKHTALQTSFTVNLLAIVNGEPKVLPLLSLMRHYLDHRKEVVRRRSLF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAHVL GL IA+ ++DEV+ +IR S + AR+ LM+R Sbjct: 362 DLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RL L R+ + E L EI IL Sbjct: 407 -----------FGLSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEG 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL +K++LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 456 RLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDLIEDEPMVITLTAQGFLKRLPLES 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG ++ED +F+ H +L F++ G VY+ KV+ LP QARG Sbjct: 516 YRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671 + +L L + E + ++ S L Y+VFAT+ G V+R L ++ + + Sbjct: 576 VHVKTLLPLAEEEEVAALL-------SVRGLDGEGYLVFATERGLVKRTALREYQNLGAA 628 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA++L D ++ V E++ +L T+ GQ +RF + +R GR+S GV GI K Sbjct: 629 GLIAIRLLEGDRLIGVALSDPEDEAILATEEGQAIRFALEEVRA-TGRDSQGVTGIRFKK 687 Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GD+V+S + ++K V+ Sbjct: 688 PGDRVVS----------------------------------LVTVKPGEMVD-------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VS +G+GKRT ++ + R G G+ VS ++G L A+ V Sbjct: 706 ---------LLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVS--TKVGRLAALLKVRGT 754 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++++S KG IR PV +IR SR T GV + + +D+ VVS + E + Sbjct: 755 EDLLVLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEEQ 805 >gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] Length = 811 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/890 (40%), Positives = 543/890 (61%), Gaps = 97/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K A Sbjct: 4 ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE R+ Sbjct: 64 RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP HNL Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VDG + +IDNP+I LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 184 GELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + +++ EIPYQ+NK+ ++E+IA LV+EK+I I DLRDES+R+G RVVIELK Sbjct: 244 IEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G +++LN+LY+YT LQS F V M+AL P+ TL +L +++ R +V+ RRT + Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRTLF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E+Q ++IL++RL RLTGL R+ + E L I E DILS + Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSHDN 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ I+KQELL VKD RRT I E +++ ED I E+M++T ++ GY+KR+ + Sbjct: 458 KIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++Q RGGKG +G+ D+D V + S +++ F+ G VY KV++LP S Q+RG Sbjct: 518 YKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + + N+L + + E+I I+ F +++ +VF TK G V++ L +F IN G Sbjct: 578 RLISNLLRIGEEEKIRAIIKTRVFDKEKE------LVFVTKQGIVKKTSLEEFKNINTGG 631 Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+++ V EN++ + T+ G VRFP +R GRN++GV+GI L + Sbjct: 632 LIAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+S ++ Sbjct: 691 GDEVVSALLI-------------------------------------------------- 700 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVN 848 K KE ILT++E G+GKRT ++ NR GKG+ R D + G +V+V Sbjct: 701 --KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCND-----KTGNIVSVLTAL 753 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D ++++ ++ G +IR P+N I SRA +GV+I A DE+V S+ RI+ Sbjct: 754 DEEELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803 >gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1] gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1] gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] Length = 828 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + R Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q+ Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 >gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3] gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3] Length = 828 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/887 (41%), Positives = 540/887 (60%), Gaps = 85/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K + K A Sbjct: 6 IVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YD+L R+ QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATN+ HNL Sbjct: 126 KSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLAPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+G +A+I+ P+I++ LM+ + PDFPTG +I G G++ AY TGRG +VIR + Sbjct: 186 REVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIRARAL 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR+G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V +AL P+ L +++ +V R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVINLALVDGVPKILNLKEMMQYYVKHRNEIVLRRTR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 366 FDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q +AILE+RL RLTG+ R I E + I+E IL+S Sbjct: 412 ------------FGLSEIQAKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II++ELL VKD RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 EKQMEIIREELLKVKDVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G +++DF+ +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G++L NI+ L GE+I T + E ++V AT HG V++ L +F R+G Sbjct: 580 GRSLANIMELPPGEKIRTYINIRNFEEPG---FIVMATTHGIVKKTALEEFSHPRRTGIA 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ +D DE+L ++ I+L G VRFP + +R GR ++GV+GI+L + ++ Sbjct: 637 AITIDEGDELLDARLTDGDHQIILAKNSGFVVRFPENEVRPM-GRTAMGVKGITLDEDEK 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 I+M +T+ + D++ Sbjct: 696 CIAM---------------------------------VTTRRMDTA-------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND D +I Sbjct: 709 -----LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKPHEKIGALVGLLDVNDEDDLI 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 L++ G + R V++IRI R T GV + + + + ++ R+ +S+ Sbjct: 762 LITVNGIVNRQHVSDIRITGRNTSGVRLIRLMQGDSISALARVPKSD 808 >gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii] Length = 683 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/685 (50%), Positives = 471/685 (68%), Gaps = 12/685 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 1 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 61 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 240 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 241 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 300 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 301 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 361 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 420 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 421 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 480 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++EL V+++ RRT I D+ ED I +ED+VVT+SH G Sbjct: 481 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 540 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 YVK PLS Y AQRRGGKG+S +++EDF+ L + +TH +L FSS G VY KV++L Sbjct: 541 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 600 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ ++N+L L Q ERIT I+P E E + V AT +G V++ L++F Sbjct: 601 PEATRGARGRPIVNLLPLEQDERITAILPVTEFEEG---VKVFMATANGTVKKTVLTEFN 657 Query: 667 QINRSGKIAMKLDSRDEILSVETCT 691 ++ +GK+A+KL DE++ V+ + Sbjct: 658 RLRTAGKVAIKLVDGDELIGVDLTS 682 >gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] Length = 840 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/890 (42%), Positives = 545/890 (61%), Gaps = 91/890 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 ++ + V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M + + Sbjct: 6 DDNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSLSHRSP 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+V+GKYHPHG+ ++YDAL RMAQD+S++ L++GQGNFGSVDGD AA RY Sbjct: 66 YKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A LL DL KDTVDF PNYD S EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H L E++D V IDNP+ ++ +M+I++GPDFPTG +I GR GI +AY TGRG I + Sbjct: 186 PPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIFGRKGITDAYTTGRGRIKV 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIE+ G++E I++ E+P+QVNK+ ++E IA+LVR+K I I+++RDESDR+G RV Sbjct: 246 RAKTHIEQ-KGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDREGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELKR A ++++LN L++ T +Q F + M+A++ +P+ F L+ + F+ R+ V++ Sbjct: 305 VMELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKEPKVFNLMELFDLFLNHRKTVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL IAV N+DEV++IIR S + AR LM R Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSR---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AILE+RL RLTGL + I NEL L I I Sbjct: 415 ----------------FSLSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIAYLEGI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S ++ II++EL+ + ++ TPRRT IV+ D++ ED I E MVVT++H GY+KR Sbjct: 459 LKSEEKINQIIREELIEIGEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP+ +Y Q RGGKG++ V D+DF+ F +TH +++F + G +Y KV+R+P GS Sbjct: 519 VPVKLYEKQHRGGKGKTAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEGS 578 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+GKA++N+++L E+I I+P F E++ +VF T++G V+R LS++ Sbjct: 579 RTAKGKAVVNLINLQPDEKIMAIIPTTDFSEEKG------LVFFTRNGIVKRTNLSEYSN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ LD DE++ + E + + TK G C+RF + R GR S GV Sbjct: 633 IRSNGVRAINLDENDELVEAKIVKPETKWLFVATKKGLCIRFKVEDAREI-GRVSRGV-- 689 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 AI D DY +C Sbjct: 690 -----------TAIKFKIDGDY---VC--------------------------------- 702 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 L+ +E IL +SEKG GKRT++ ++R NR+GKG+ + ++ ++ G +V V Sbjct: 703 --GAATLESEEDEILMLSEKGLGKRTTASEYREQNRAGKGVISMKLT--SKTGDVVGVVM 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V ++ ++ ++ G +IRV + IR A R T GV + S K ++VVS+ + Sbjct: 759 VEEDKDLMCLTSVGKMIRVDMETIRKAGRNTSGVKVVSVEKKDKVVSMAK 808 >gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 834 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 834 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/903 (41%), Positives = 562/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 561/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D +++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] Length = 846 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/889 (39%), Positives = 551/889 (61%), Gaps = 86/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V ++ EM+ Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M +G+ K Y Sbjct: 4 EGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGYR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R L++G GNFGSVDGD AA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ K + L+ D+ K+TVDF PN+DG +EP VL +R+PN+LVNG GIAVGMATNIP Sbjct: 124 AKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+DG + +I+N D+++ LM I+GPDFPT +I+G GI+ AY TGRG ++IR Sbjct: 184 HNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ G + +I+VTEIPYQVNKA ++E +A LV++K+I I+DLRDESDR G R+VI Sbjct: 244 KAEIEEEKG-KNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+ +++LNQLY++T LQ F + M+AL +P+ L IL +V F++EV+ RR Sbjct: 303 ELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L+KA RAH+L GL IA+ ++DEV+++IR S N A+ LM ++N Sbjct: 363 TRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMN-NFN--------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+++L RLTGL R+ I E L +I +IL Sbjct: 413 ----------------LSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILD 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +L IIK+EL+ +K++ R+T IV+G D++ ED I + ++VT++H GY+KR+ Sbjct: 457 KEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLD 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + Y +Q+RGGKG + +DF+ ++F+ STH+++LFF++ G VYK K + +P Sbjct: 517 MDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRT 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G ++N++ + E+I T++ + + + V T++G +++ ++S + I + G Sbjct: 577 AKGTNIVNLIPIENNEKIQTVIGLKDIDDMK---HFVMCTRNGIIKKTEISKYSSIRKGG 633 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE++ V+ ++I++ T+ G C+RF +R GR + GV+ I+L K Sbjct: 634 LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRKT 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+ +SM +V+ Sbjct: 693 DKAVSMDVVI-------------------------------------------------- 702 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +++ +L++SE GFGKRT ++ I R GKG+ ++ ++ G +V V ++D+ Sbjct: 703 ---EDETLLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDDE 757 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++LV+ IR+ V+EI SR GV + T+++E++V++ +I+ + Sbjct: 758 LMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806 >gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] Length = 867 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/882 (40%), Positives = 546/882 (61%), Gaps = 85/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 ILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD PAA RYTECRL Sbjct: 72 RVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ K+TVD N+D + +EP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 AKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNP+I ++ LM+ I PDFPTGA I G G+K+AY TGRG I++R + Sbjct: 192 SEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIYGLQGVKDAYETGRGRIIMRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IVVTEIPY VNKA ++E IA+LV+E ++ I+++ DE+ RQG R+V+++K Sbjct: 252 IE-SDDTHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A++ILN+L++ T+LQS FSVN +AL +P +L +K FV R +V +RRT++ Sbjct: 311 RDANANIILNKLFKMTALQSSFSVNCIALVKGRPRLLSLQECVKYFVEHRHDVTIRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVVRIIR S P A+ L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L ++Q++AI+++RL++LTGL +++ E + + IK+ +IL++ Sbjct: 416 -----------FDLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 465 RCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLAD 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGG G G R++DF ++ + H ++LFF+ G + K + +P G A+G Sbjct: 525 FKEQARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTAKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+L+ + + + DE ++ YVVFATK G V++ L + + +G Sbjct: 585 RAIQNMLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 IA+ ++ DE++ V N++++ + G+ RF A+R GR S GVRG+ L Sbjct: 645 IAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTM-GRVSTGVRGMRLDDDG 703 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI M +V DTE+ T Sbjct: 704 EDGVIGMIVV-------------------------NDTEKET------------------ 720 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LVA+ V D + Sbjct: 721 --------VMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITE--KTGKLVAIKNVTDEN 770 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +++++ G +IR+ V E R+ RAT+GV + + AK V++ Sbjct: 771 DLMIINQSGIVIRLAVAECRVMGRATQGVRLINLAKKNDVIA 812 >gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] Length = 852 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/889 (41%), Positives = 547/889 (61%), Gaps = 85/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + I ++I +EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRILFGM ++GV NK Sbjct: 3 EGENENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR L++GQGNFGS+DGD PAA R Sbjct: 63 PHKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL++ A +L D+ KDTVD++ N+D S +EPVVL A+ P +L+NG GIAVGMATN Sbjct: 123 YTEARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLGEV+ G +A I+N +I + LME + PDFPTG +I G G+K A+ TGRG IV Sbjct: 183 MAPHNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIV 242 Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG ++IE K G++E IV+TEIPY VNKA+M+EK A+L+ EK+I I+ +RDESDR G Sbjct: 243 MRGKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V ELKR A VILN LY++T LQ+ FSVN VAL +P L ++ +V R EV Sbjct: 303 RIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RRT+Y L +A RAH+L G IA+ +LDEV+ +IR S +PETAR L++R Sbjct: 363 VIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAIL++RL RLTG+ R+ I E + I+E Sbjct: 415 ------------------FDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +IL + + + IIK EL +KD RRT I D ED I E++++TVSH GYV Sbjct: 457 EILENEDKRMEIIKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L+ YR Q RGG G GV +++DF LF STH +L F+ G ++ K + +P Sbjct: 517 KRTALTEYRTQGRGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G+ ++G+ + N++++ +RI +I+ + D NN ++V TK G +++ L + Sbjct: 577 GNKTSKGRPIQNLINIQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYS 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ + D++++V+ + I++ K G+ + FP +A+R GR + GV+ Sbjct: 637 RPRTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPM-GRTATGVKA 695 Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I+L + D VI M +C +E+ +L Sbjct: 696 ITLTGQDDFVIGM-------------VCA--------------SEDTATL---------- 718 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L VSE G+GKR+ ++RI+NR GKG++A +V+ ++ GALVA+ Sbjct: 719 ---------------LVVSENGYGKRSYLNEYRITNRGGKGVKAMNVT--DKTGALVAIK 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V D D +++++ G +IR+ ++ +RI RAT+GV + +++ SV Sbjct: 762 EVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810 >gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] Length = 840 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/883 (42%), Positives = 545/883 (61%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 9 VTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y + RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATNIPTH+L Sbjct: 129 SKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPTHHL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+ +P+I++ LME I GPDFPT +I+GR+GI+ AY TGRGSIV+R Sbjct: 189 GEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIVVRARVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +E I++TEIPYQVNKA ++E+IAEL REK+I I D+ DESDR G R+VIE++ Sbjct: 249 IEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA VI+N LY+ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ RRT++ Sbjct: 309 RDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ N+D V+ +IR S ETA+ LM + Sbjct: 369 ELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTK--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R I E +L I + +L+ Sbjct: 414 -----------FQLSDKQAQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+L II++EL +K + RRT I+ G ++++EDED I E++ +T++ GY+KR+PLS Sbjct: 463 RILEIIREELEEIKIKYADKRRTEILTGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGG+G G+ ++DFV L S+H ++LFF++ G VY+ K + +P A+ Sbjct: 523 TYRSQRRGGRGIQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPEYGRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G LIN+L + E++ ++ E N ++ F TKHG V+R +S F +I +SG Sbjct: 583 GIPLINLLGIESQEQVNAVINVSE---FTENSHLFFTTKHGVVKRTDISQFAKIRQSGLR 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++SV+ +I++ TK GQ + FP + IRV GR + GVRGI L + D+ Sbjct: 640 AVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRVM-GRTAAGVRGIRLREDDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M I L++D Sbjct: 699 VIGMEI----------------------------------LEDD---------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 Q +L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V+ + I+ Sbjct: 709 ---QKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVSGEEDIM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L++ G +IR + + R+ GV + ++E+V +V ++ Sbjct: 764 LMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKV 806 >gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b F2365] gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459] gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816] gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220] Length = 842 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M + L++D V Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR ++ + R+ GV + +DE+V +V ++ Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 >gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8] gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus] gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8] Length = 805 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/882 (42%), Positives = 530/882 (60%), Gaps = 92/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK A Sbjct: 4 VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR LI+GQGNFGS+DGDPPAA+RYTE RL Sbjct: 64 KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ KDTVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD VA+I+NP I L+ +M + GPDFPTG L + GIK AYATGRGS+ +R Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ G R +VVTEIPYQVNKA+++ +IA LV+ K+I DI LRDESDRQG R+ IELK Sbjct: 243 VEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ V+LNQLY++T+LQ+ F+VN++A+ +P+ +L+ +++ ++ R+EVV RR+ + Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAHVL GL IA+ ++DEV+ +IR S + AR LM+R Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RL L R+ + E L EI IL + Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL +K +LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG ++ED T +F+ H +L F++ G VY+ KV+ LP QARG Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671 + ++L L + E + ++ S L Y+VFAT+ G V+R L ++ + ++ Sbjct: 576 VHVKSLLPLAEDEEVAALL-------SVRGLDQEGYLVFATERGLVKRTALKEYQNLGQA 628 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA++L D ++ V E++ +L T+ GQ +RFP+ +R GR++ GV G+ K Sbjct: 629 GLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKK 687 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 + + +V+ D Sbjct: 688 PEDRVVSLVVVKPGEMVD------------------------------------------ 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L+VS +G+GKRT ++ + R G G+ VS ++G L A+ V + Sbjct: 706 --------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVS--TKVGRLAALLKVRGGE 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++++S +G IR PV EIR SRAT GV + + +D+ V S Sbjct: 756 DLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVAS 797 >gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 812 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/887 (39%), Positives = 552/887 (62%), Gaps = 88/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +M+ Y+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ +K + K A Sbjct: 12 IEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELGLTPDKSFHKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G M YHPHG+++IYDA+ RMAQ++S+R +L+EG+GNFG++DGDPPAA RYTE ++ Sbjct: 72 NVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDPPAAYRYTEAKM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L DLGKDTV+FRPN+D QEP VL +R+PN+LVNG GIAVGMAT+IP HNL Sbjct: 132 NKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAVGMATSIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V +IDNPD LD +M I+GPDFPTGA+I+GR IK AY TGRG I++R + Sbjct: 192 GEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIMGREAIKKAYETGRGKIIVRAKTE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIEL 314 IE+ + +I+VTEIPYQVNKA ++EKI +LVR+K+I + DLRDES ++ G ++VIE Sbjct: 252 IEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDESSKKTGIKIVIET 311 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R + +V+LN L++++SLQ ++SV ++++ +P+ L+ IL+ ++ +++EVV RRTK Sbjct: 312 RRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGEPKILNLVDILQYYLKYQKEVVTRRTK 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA +R H++ GL IA+ N+DEV+ IIR +A + MQ+ L+ Sbjct: 372 FDLNKALERLHLVQGLLIAIDNIDEVIEIIR------SAYDDAMQK------------LM 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D S LSEVQ AIL++RL RL GL ++ +++E LG +I IL S Sbjct: 414 DRFS----------LSEVQATAILDMRLRRLQGLEKEKLQDEERELGEKIAYFNSILESE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +LL IIK+E++ ++D+ RRT+I +++ +D I E++ +T++H GY+KR+P+ Sbjct: 464 EKLLSIIKEEIIEIRDKYKDVRRTQITSMPHEIDIKDTIPNEEVTITLTHQGYIKRLPVD 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+AQ+RGGKG S + ++EDFV L I S H +LF ++ G +Y + +P S A+ Sbjct: 524 TYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAK 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L L + E+I TI+ E+E +N Y+V TK G +++ ++S+F + R G Sbjct: 584 GSNIINLLPLEKDEKIATIITTRENE---DNAYIVMCTKKGIIKKTRISEFTKSKRQGMK 640 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+++ ++ L TK G + F + +R GR + GV + L K D+ Sbjct: 641 AINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENTLRPM-GRTATGVIAMRLKKDDE 699 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++S+ I ND V Sbjct: 700 IVSLEIA----------------------------------SNDKQV------------- 712 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SE G+GKRT +++ +R+G G++ +++ + G + V ++D+++ Sbjct: 713 ------LIISENGYGKRTQVSKYKVQSRAGVGVKTYKITE--KTGNIADAKIVEESDEVM 764 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++ GTLIR PV EI + SR T GV + + +++ + ++E I+ E Sbjct: 765 IINSDGTLIRTPVAEISLLSRDTSGVKVMRSGENDIISAIEIIQSEE 811 >gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208] gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99] Length = 842 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 544/883 (61%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 9 ITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATNIPTH+L Sbjct: 129 SKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTHHL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+ NP+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI +RG Sbjct: 189 GEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSITVRGRVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R+VIE++ Sbjct: 249 IEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVIEVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ RRT++ Sbjct: 309 RDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 369 ELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------------ 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I E +L I + IL+ Sbjct: 416 -------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+KR+PLS Sbjct: 463 RILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P A+ Sbjct: 523 TYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I +SG Sbjct: 583 GIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLR 639 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI L + D+ Sbjct: 640 AVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIRLREDDE 698 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI M + L++D V Sbjct: 699 VIGMEV----------------------------------LEDDEKV------------- 711 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V + ++ Sbjct: 712 ------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLM 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L++ G LIR + + R+ GV + +DE+V +V ++ Sbjct: 764 LMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 >gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232] gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232] Length = 828 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 556/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++++++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + D +E+ Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R +E K F T ++G KRT +F +N G+RA K+ E L+ V + Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D II+ + G +R IR R+ GV +D+RVV RIR+++ V Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 >gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 817 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/884 (42%), Positives = 555/884 (62%), Gaps = 85/884 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVITIIKEEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQRRGG+G G + D+DFV +L +TH + F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ E S N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTII--SEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V +DI++ TK G VRF S +R + R++ GVRG++L Sbjct: 634 NGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+VI A R I+ D E Sbjct: 693 EGDEVI----------------------GASR--ITDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + VN + Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLVTVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + I++++D G +IR V +I RAT GV I +D +++++ Sbjct: 758 EDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKIMTL 801 >gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] Length = 810 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/717 (47%), Positives = 489/717 (68%), Gaps = 30/717 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I++E++ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M +G+ +K Y K A Sbjct: 7 ILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G+V+ K+HPHG+AA+YDAL R+AQD+S R LL++G GNFGSVDGD AA RYTE RL Sbjct: 67 WVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TVDF NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 127 SKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + +ID+PD ++ LM+ I+GPDFPTGA+ILGR GI +AY TGRGSI++R + Sbjct: 187 GEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILRAATQ 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ SG + +IVVTEIPYQVNKA ++EKIAELVREKRI I DLRDESDR+G R+VIEL+ Sbjct: 247 IEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIELR 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R V+LN L+++T+LQ+ + V M+ L +P L +L+ ++ +E+V+ RRT Y Sbjct: 307 RDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRRRTTY 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++D V+ +IR S E AR L+++ Sbjct: 367 DLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQ--------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +LSE Q +AIL++RL RLTGL R I E L +IKE IL+ Sbjct: 412 -----------FHLSEEQAQAILDMRLQRLTGLERQKIDEEYAELVEKIKELRAILADEK 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++LG+I++ELL +K + RRTRI G ++EDED I E++ VT+SH GY+KR P+S+ Sbjct: 461 KILGVIREELLDIKAKYGDERRTRITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQPMSL 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++QRRGG+G + + ++EDFV LFI S+H +LFF++ G VY+ K + +P A+G Sbjct: 521 YKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKG 580 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N+L+++QGE+I+ ++P S+ Y++ AT+ G +++ L +F I R G +A Sbjct: 581 TPIVNLLNVDQGEKISAVVPI---RSTDGGQYLIMATREGTIKKTPLDEFENIRRGGLVA 637 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 + L DE+++V +++L T+ G +RFP + +R GR + GV+ + L G Sbjct: 638 ISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSM-GRGAAGVKAVDLQGG 693 Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 62/98 (63%), Gaps = 2/98 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L V+ +GFGKRT ++R +R GKGIR V+ G++V++ V +++ +++++ Sbjct: 708 VLVVTNRGFGKRTPITEYRHQSRGGKGIRTLHVTA--RTGSVVSLKMVRNDEDVMVITTT 765 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G IR+ V+EI + R T+GV + + +DE V +V ++ Sbjct: 766 GIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKV 803 Score = 38.1 bits (87), Expect = 7.1, Method: Compositional matrix adjust. Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 22/173 (12%) Query: 745 DADYDERICYMKHMSA----QRRLISGDTEEITSLKND---------SSVEGNISEERCQ 791 D +Y E + +K + A +++++ EE+ +K ++ EG I +E Sbjct: 439 DEEYAELVEKIKELRAILADEKKILGVIREELLDIKAKYGDERRTRITAGEGEIEDE--- 495 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ +T+S G+ KR ++ R G+GI A + + + L F + + Sbjct: 496 DLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHL---FITSSHH 552 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 ++ ++KG + R+ E+ RA KG V + + + E++ +V IR ++ Sbjct: 553 YLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPIRSTD 605 >gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab] gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab] Length = 846 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/913 (41%), Positives = 544/913 (59%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT IIS+D + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MTARIISTD-----------LQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 49 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ ++ + KCAR+ G+V+GKYHPHG+ A+Y+AL RMAQD+S+R L++G GNFGS+ Sbjct: 50 HELGLTADRPFRKCARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSI 109 Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D DPPAA RYTECRL A LL D+ +TVDF NYDGS QEP+VL AR P +L+NG Sbjct: 110 DNDPPAAMRYTECRLTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGS 169 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE+VDG +A+I NP++ LM+ I PDFPTG +I+G+ GI+ Sbjct: 170 SGIAVGMATNIPPHNLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIRE 229 Query: 240 AYATGRGSIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 AY TGRGSI +RGV+ +E + RE I++TE+PYQ NKAAM+EKIAELV EK++ Sbjct: 230 AYTTGRGSITLRGVATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEG 289 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 IAD+RDESDR+G RVVIELKR A V+LN LY+ T LQS F VNM+A+ +P TL Sbjct: 290 IADIRDESDREGMRVVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLR 349 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 L+AF+ FR EV+ RRT+Y L KA +R H+L G +A+ LD V+ +IR + + TAR Sbjct: 350 DALQAFLDFRAEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARA 409 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 EL T+ LSE Q IL+++L RLT L + I+ Sbjct: 410 EL--------------------------QATLGLSEAQADGILQMQLRRLTALEAEKIQA 443 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L +I + DIL+ R R++ II +EL +K +PRR+R+ +++ D I Sbjct: 444 EHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFASPRRSRLCLEDCELKVADLIEN 503 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + V+ ++ GY+KR+ L ++ Q R +G++G ++D+D + F +H ++LFF+ Sbjct: 504 RETVIFLTEQGYIKRMDLEEFQVQGRATRGKAGARIKDDDAIEQFFACRSHDTILFFTDR 563 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFAT 652 G VY + +P GS ARG A++ +L + + ER+T+++P F +DE Y+V T Sbjct: 564 GMVYTLPAYEIPQGSRTARGSAIVQLLPITREERVTSMVPVSEFSDDE------YLVMLT 617 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 + G +++ LS F + +G IA+ L+ DE+ V +D+++ T+ G C+RF Sbjct: 618 RAGYIKKTALSAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMCIRFRADD 677 Query: 713 IRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 ++ GR + GVR I+L GD ++SM I+ M+A+R Sbjct: 678 EQLRPLGRATRGVRAITLNPGDDIVSMDIIFAESV-----------MAAER--------- 717 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 EG +L ++L ++++G GKR++ FR NR GKG+ AT Sbjct: 718 ----------EGE---------RLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATK 758 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + E L A+ VN D+I+LV+ +G ++R I SR GV++ ++ + Sbjct: 759 FRQ--ESDELAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSI 816 Query: 892 VSVERIRESEIVD 904 V V + S I D Sbjct: 817 VGVTVVPASFIRD 829 >gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] Length = 827 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/888 (41%), Positives = 537/888 (60%), Gaps = 87/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K A Sbjct: 6 ILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GK+HPHG+ A+YD+L R+ QD+S+R LI+GQGNFGS+DGD PAA RYTE R+ Sbjct: 66 RIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP NL Sbjct: 126 KAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG +A+I+NPDI++ LM+ + PDFPT +I G G+K AY TGRG +VIR + Sbjct: 186 REVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIYGYEGVKQAYLTGRGKVVIRARAL 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGMPRVLNLKQMMEYYIRHRNEIVLRRTQ 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L A RAH+L GL I + NLDEV+ IR SP+ TA+ LM++ Sbjct: 366 YDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEK-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E+Q++AILE+RL RLTG+ R I E + I E IL++ Sbjct: 412 ------------FGLTEIQSKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II++ELL VKD RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 QKQMQIIREELLKVKDVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G + +DFV +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQARGGKGVAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTAR 579 Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G++L NI+ L E+I + DE ++V AT +G V++ L +F + R+G Sbjct: 580 GRSLANIMELQPAEKIRAYINIRNFDEPG----FIVMATGNGTVKKTGLDEFSRPRRNGI 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ ++ DE++ ++ I+L G VRFP S IR GR ++GVRGI+L + Sbjct: 636 AAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRSM-GRTAMGVRGITLDADE 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + ISM +T+ + D++ Sbjct: 695 KCISM---------------------------------VTTKRFDTT------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++ GFGKR+ D+R++ R +G+ + + GA+V + VND D + Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTKRGARGV--ITLKAHEKTGAMVGLLDVNDEDDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 I++++ G + R V++IR+ R T GV + + + ++ R+ +S+ Sbjct: 761 IIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALARVPKSD 808 Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust. Identities = 46/217 (21%), Positives = 101/217 (46%), Gaps = 18/217 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V + G VK+ L + RR G + + + + D + D + ++ S G+ Sbjct: 609 FIVMATGNGTVKKTGLDEFSRPRRNGI--AAITIEENDELIDARLTDGDHQIILAKSSGY 666 Query: 598 VYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 V R P ++ G+ + + ++L+ E+ +++ +++ ++ T +G Sbjct: 667 VV-----RFPESEIRSMGRTAMGVRGITLDADEKCISMVTTKRFDTT-----LLAVTDNG 716 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISA 712 +R+++ D+ R + + L + ++ ++ + E+D+++ T G R +S Sbjct: 717 FGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVGLLDVNDEDDLIIITNNGIVNRQHVSD 776 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 IR GRN+ GVR I L GD + ++A V +D + D Sbjct: 777 IR-LTGRNTSGVRLIRLMAGDIISALARVPKSDEEID 812 >gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563] gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 811 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/887 (40%), Positives = 543/887 (61%), Gaps = 91/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K A Sbjct: 4 ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE R+ Sbjct: 64 RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP HNL Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VDG + +IDNP+I LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 184 GELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + +++ EIPYQ+NK+ ++E+IA LV+EK+I I DLRDES+R+G RVVIELK Sbjct: 244 IEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G +++LN+LY+YT LQS F V M+AL P+ TL +L +++ R +V+ RRT + Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRTLF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E+Q ++IL++RL RLTGL R+ + E L I E DILS + Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSYDN 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ I+KQELL VKD RRT I E +++ ED I E+M++T ++ GY+KR+ + Sbjct: 458 KIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++Q RGGKG +G+ D+D V + S +++ F+ G VY KV++LP S Q+RG Sbjct: 518 YKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + + N+L + + E+I I+ F +++ +VF TK G V++ L +F IN G Sbjct: 578 RLISNLLRIGEEEKIRAIIKTRVFDKEKE------LVFVTKQGIVKKTSLEEFKNINTGG 631 Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+++ V EN++ + T+ G VRFP +R GRN++GV+GI L + Sbjct: 632 LIAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+S ++ Sbjct: 691 GDEVVSALLI-------------------------------------------------- 700 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K KE ILT++E G+GKRT ++ NR GKG+ ++ + G +V+V D + Sbjct: 701 --KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGV--INLRCNEKTGNIVSVLTALDEE 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +++ ++ G +IR P+N I SRA +GV+I A DE+V S+ RI+ Sbjct: 757 ELVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803 >gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] Length = 849 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/896 (41%), Positives = 537/896 (59%), Gaps = 92/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ +K + KCA Sbjct: 10 ISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IYDAL ++AQDW+ R L++G GNFGS DGD AA RYTE RL Sbjct: 70 RIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN + +D +M+II+GPDFP GA ILG GIK AY TGRG I + Sbjct: 190 KEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHRGIKEAYRTGRGKIKV 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +IVVTE+PY VNKA +++KI ELV+ KR+ I D+RDES R+G RV Sbjct: 250 RAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDESSREGIRV 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ +A+V+LNQLY++T LQ F VNM+AL P+ + +L ++ +E+VV Sbjct: 310 VIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDGVPKILNISQMLGYYLKHQEDVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+ L++R Sbjct: 370 RRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER---------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+E+Q +AI+++RL LTGL R+ + E L +I I Sbjct: 420 ----------------FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+IK ELL + + RRT + + ++ DE+ I RE++V+T++ LGY+KR Sbjct: 464 LADEKKLLGVIKDELLVISQKYGDERRTALGRDVDEVTDEELIERENIVITMTKLGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P +++AQ RGGKG G+ DED++ + + +TH ++FF++ G VY+ K + +P Sbjct: 524 MPEDIFKAQNRGGKGIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLKGYEIPEAG 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L GE+IT ++P +S + Y+ AT++G V++ +S++ + + Sbjct: 584 RTARGVAIVNLLQLQAGEKITAVIPL---KSYEDGKYLFMATRNGMVKKTDISEYQNVRK 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ E+DI L TK G +RF +R GR S+GV+GI L Sbjct: 641 TGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQ-TGRTSMGVKGIHLG 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VISM MS+Q Sbjct: 700 KDDIVISM------------------QMSSQ----------------------------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + IL V+E G GKRT +F + NR GKG++ ++ ++ G LV V D Sbjct: 713 ------GEKILLVTENGMGKRTLISEFNVQNRGGKGVKCYKIT--DKTGDLVGAKIVTDE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904 + I++++ +G +IR I R T GV + + D +V S+ +++ E D Sbjct: 765 NDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQKEEFDD 820 >gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] Length = 821 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/901 (42%), Positives = 542/901 (60%), Gaps = 85/901 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG++++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 DVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILASEARQRQIIKDELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ E N+ + T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV T DIL+ TKLG +R +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ + L++D S Sbjct: 692 GIKLKTGDVVVGAGV----------------------------------LESDES----- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E + T+SE+G+GKR + + + R G G + ++ ++ G +VAV Sbjct: 713 -----------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIES 819 Query: 905 E 905 E Sbjct: 820 E 820 >gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] Length = 828 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/896 (42%), Positives = 560/896 (62%), Gaps = 86/896 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + D L Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + R Sbjct: 693 EDDRVVGAS-------------------------------------------------RI 703 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q+ Q +L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 704 QD----NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDE 905 + I+++++KG +IR V I RAT GV I D ++V+ ++ E +DE Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIDE 813 >gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365] gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365] Length = 891 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/896 (42%), Positives = 550/896 (61%), Gaps = 63/896 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T V+I EM++S++ YA++VI+ RA+PD RDGLKPVHRRILF + WN+ Y+KCA Sbjct: 7 VTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKCA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++YDAL RMAQD+S+R L++GQGNFGS+DGDPPAA RYTECR+ Sbjct: 67 RIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECRM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL DL K+TVD++PNYD EP VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 127 ARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D +A++++PD+ + L EI+ GPDFPTG +I GR GI+ A+ GRG++VIRG + Sbjct: 187 GEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAVVIRGRTQ 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +R+ IVVTE+P+ VNK+ +E A LVR+KRI I+D+RDESDR+G RVV ELK Sbjct: 247 FETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LN L++ T+LQ+ F+VNM+A+ +P+ +L L+ F+ R VV RR + Sbjct: 307 RDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRTVVRRRCLF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLI 434 L +AR+R ++ GL +AV +D V+ IIR S + + A+ LM +R + Sbjct: 367 ELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERAGRP 426 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSS 493 D + + G ++LS Q +AIL++RL RLTGL R+ + E L EI + L+ IL Sbjct: 427 ADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYREL-WEITDYLEGILGD 485 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +L G+I EL ++D+ PRRT IV+ ++ DE I EDMVVT + GYVKR L Sbjct: 486 DVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTAL 545 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y AQ RGGKG G D+DFV D+F+ STH +L F+++G VY++KV+ LP GS + Sbjct: 546 DEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRIS 605 Query: 614 RGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G+ +N++ +L E + ++P E ++L AT+ G V++ + F +I +G Sbjct: 606 KGRPFVNVIEALQPDEYVVGMLPVKE---FTDDLSAFMATRMGTVKKTVAAAFSRIRVTG 662 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ +D DE++ V + D+LL TK GQ +RF +R GR + GVRGI LA G Sbjct: 663 IKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPM-GREARGVRGIGLAGG 721 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ M++ ER C Sbjct: 722 DAVVGMSVF--------ERDC--------------------------------------- 734 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 E ILTV E G+GKRT + R GKG+ ++ N G + V V ++D Sbjct: 735 ----EDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERN--GPVSGVRLVGEDDH 788 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +I++S G LIR+ V +I + SRAT+GV + E+V S+ER+ E + D+A+S Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLAEPD--DDADS 842 >gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] Length = 914 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/907 (41%), Positives = 543/907 (59%), Gaps = 71/907 (7%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M+ + + E + ++I +E++ SYLTYA++VI+ RA+PD RDGLKP RRIL M Sbjct: 1 MSIAVATPPPSEPREPLPLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + +G+ KCA I GE M +YHPHG+ +IY LARMAQ W++R LL+ GQGNFGS+ Sbjct: 61 LDLGLTPGGSTSKCAGIVGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSI 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 G PPAA RYTE +L A +LDD+ DTVDF+P+YD QEP VL AR+PN+LVNG G Sbjct: 121 HGLPPAAMRYTEAKLSPVAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP HNLGEV D +A+IDNP ID + L+E + GPDFPTG VI GR GI+ A Sbjct: 181 GIAVGMATSIPPHNLGEVCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVICGRMGIREA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG IV+R +E+T R QIV TEIPYQ+ K +L+K+ +LV RI IAD+ Sbjct: 241 YLTGRGRIVLRAKHVVEETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVV 300 Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 DESD RQ R+V++LKR +VILNQLY+Y+ LQ F V M+AL +P+ TL +LK Sbjct: 301 DESDRRQPVRIVVKLKRNEDPNVILNQLYQYSPLQDTFGVIMLALVDGRPKTLTLRELLK 360 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ R V+ RRT +LL + R RAHV+ GL IA+ +DE++ IIR SPNP AR LM Sbjct: 361 IYLDHRANVIRRRTAFLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMG 420 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 + D++ + + T L+ Q AIL +RL +LTGL D + E Sbjct: 421 MAVGP-------DVMRRALNDPEAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRE 473 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED-M 538 L I + DIL+ R+ IIK +L +K + PRRT I + L D++ ++RE+ M Sbjct: 474 LRAAIADAEDILAREVRVREIIKADLEELKRKYADPRRTVISDEELGSYDKEALIREEYM 533 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT++ GY+KR+P S YRAQ RGG+G++ ++ DF+ +F+ TH +LFF+ G + Sbjct: 534 VVTITDGGYIKRLPPSTYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLI 593 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 + KV+ +PI A G+A++N+L L +GERIT ++P FP++E ++ AT+ G Sbjct: 594 HWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFPDNE------FLFMATRRG 647 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ LS + + R G IA+ L+ D++++V + ++L+T+ G +RF S +R Sbjct: 648 TVKKTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRP 707 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI L DQV+ M +++ ++ SL Sbjct: 708 M-GRPACGVRGIRLEGDDQVVGM-------------------------VVANGPDDPASL 741 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 LTV GFGKRT ++R +R GKG+ D+ Sbjct: 742 -------------------------LTVCSNGFGKRTRLSEYRAQHRGGKGL--IDIKTT 774 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 G +VA+ V D D+++L +++G LIR ++E R R T+GV + + +RVV++ Sbjct: 775 ERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRVVALA 834 Query: 896 RIRESEI 902 ++ ESE+ Sbjct: 835 KLPESEL 841 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 20/212 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VK+ PLS Y +RGG G+ D+ H + + + ++E R Sbjct: 647 GTVKKTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVR 706 Query: 606 LPIGSPQA--RGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 P+G P RG + L +++ + P+D +S ++ +G +R + Sbjct: 707 -PMGRPACGVRG------IRLEGDDQVVGMVVANGPDDPAS-----LLTVCSNGFGKRTR 754 Query: 662 LSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 LS++ +R GK I +K R+ ++++ T ++++LTT+ G +R +S R G Sbjct: 755 LSEYRAQHRGGKGLIDIKTTERNGPVVAIAKVTDADEVMLTTERGILIRTGLSETRDI-G 813 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 RN+ GVR I + +GD+V+++A + ++ D+ Sbjct: 814 RNTQGVRLIRVDEGDRVVALAKLPESELSQDQ 845 >gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 809 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/894 (40%), Positives = 560/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EEFDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ +++V+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L++R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFG------- 414 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 415 -------------------FTEVQAQAILDMRLQRLTGLERQKIEEELAELLKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYV 548 +L++ + + IIK+E+L +K++ RRT+I++ + +E+ +++E D V+T++H GY+ Sbjct: 456 VLANEAMVKEIIKKEILEIKEKYKDERRTKIIQDEQEDFEEEELIQEQDTVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGGKG +G+ R+EDFV ++F+ +TH +LFF+ G Y+ + + +P Sbjct: 516 KRLPLDTYKSQKRGGKGITGISTREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G A++N++ + + E+IT M + + +++ TK+G +++ LS+F Sbjct: 576 ASRQAKGTAIVNLIQIGKDEKITACMTVKD----FKEGFLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++++L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD V+ M +D Y +C ++ +R D EE Sbjct: 691 LEDGDFVVGMEKA--SDGKY--LLCVTENGFGKR----SDIEE----------------- 725 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +R + R KG+ V++ + G +V + VN Sbjct: 726 ----------------------------YRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I+L S +G IR+ ++++ + R T+GV + D +V S+ RI+ + Sbjct: 756 DEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAEQ 809 >gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] Length = 837 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/881 (41%), Positives = 544/881 (61%), Gaps = 88/881 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K ARI GE Sbjct: 9 IEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL++G GNFGS+DGD AA RYTE R+ + ++ Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEARMARISN 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 L+DD+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDNP++ LME I+GPDFPTG +I G+ GI++AY TGRG + +RG IE+ Sbjct: 189 GILALIDNPELTPLNLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGKVEIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I++ EIPYQ+NKA ++E+IA+LV++KR+ I DLRDESDR G RVVIE+K+G Sbjct: 249 NGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 ++ILN+LY+YT LQ+ F + M+AL P+ L IL+ ++ R EVV RRTK+ L+KA Sbjct: 309 ELILNKLYKYTELQNTFGIIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRTKFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ IIR S + AR L+++ Sbjct: 369 EKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 S+VQ RAIL+++L RLTGL R I E + I E +ILS S++ I Sbjct: 411 --------FSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 IK+ELL +K++ + RRT I +++ ED I E++++T+++ GYVKR+ +S Y+AQ+ Sbjct: 463 IKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQK 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG + ++DFV + S +++ F++ G V+ KV+ +P S Q+RGK + N Sbjct: 523 RGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQSRGKLMSN 582 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 I+ + + E+I ++ D S N VVF TK G +++ L +F IN SG A+KL Sbjct: 583 IIRIREDEKIRAVIK-TRDFSKDNE--VVFVTKEGLIKKTNLDEFKNINNSGLKAIKLKE 639 Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 D+I+ V E QE + + TK G +RF +R GR+++GV+ I+L GD ++S Sbjct: 640 DDDIIYVGLIEKIDQEQ-VFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRPGDSIVS 697 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 ++ D Sbjct: 698 ALLIKDEDGS-------------------------------------------------- 707 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILTV+E G+GKRT ++ + RSGKG+ ++ + GA+V+V PV + ++++ ++ Sbjct: 708 --ILTVTENGYGKRTRIDEYPLQARSGKGV--INIRCNAKTGAVVSVLPVTEGEELMAIT 763 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G +IR+P++ I + RAT+GV+I E+VVS+ R++ Sbjct: 764 SSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVQ 804 Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 80/160 (50%), Gaps = 19/160 (11%) Query: 756 KHMSAQRRLISGDT-------EEITSLK---ND---SSVEGNISEERCQELKLKEQFILT 802 K+++ R ++S D+ EE+ LK ND + +E E ++L E ILT Sbjct: 444 KYIAELREILSHDSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILT 503 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 ++ KG+ KR ++ R GKG+ + + E + ++ ++ D +++ +++G + Sbjct: 504 LTNKGYVKRMEVSKYKAQKRGGKGVASQNTI---EDDFVESIESASNLDTLMIFTNQGRV 560 Query: 863 IRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899 + V EI S+ ++G + I +DE++ +V + R+ Sbjct: 561 FNIKVYEIPETSKQSRGKLMSNIIRIREDEKIRAVIKTRD 600 >gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca] gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39] Length = 884 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/893 (42%), Positives = 544/893 (60%), Gaps = 53/893 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 5 ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSVD DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124 Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL + +L D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E+VDG VAVI NP+I LM I GPDFPTGA ILGR+GI+ AY TGRGSI +R Sbjct: 185 PHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244 Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE + DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR+G Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+EL+R A V+LN LY+ T LQ+ F NM+AL KPE TL L F+ FR Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRIH 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y KA +R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q AIL+++L RLT L I E L +I + Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R R+L I++QE + +K+ TPRRT I ++ED D I E ++ ++ GY Sbjct: 459 NDILNRRERILEIVEQEAIQIKERHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + AQ R +G+SG M+++D V H S+LFF+ G Y K +++P Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 IGS ARG ++ +L + + E+IT+++ E N+ Y+V TK G +++ LS F Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FTNDEYLVMLTKGGYIKKTALSAFSN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 I +G IA+ L+ DE+ V + ++ I++ ++LG + F ++ GR + GV+ Sbjct: 636 IRSNGLIAISLNEGDELRWVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPLGRATRGVKS 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L D++I M I+ + A + G+ EI +N ++VE Sbjct: 696 MKLKPNDELIGMDIL-------------PSFIVATIPQLGGEEPEIEEEENTTAVEDVED 742 Query: 787 EERCQELKLKE-----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + +EL E IL ++ +G+GKR FR+ NR+GKGI AT + Sbjct: 743 MDSSEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCV 802 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VA+ V++ D+++L++ +G +IR ++ I SR GV + K++ + +V Sbjct: 803 VALQVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAV 855 >gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 842 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/889 (41%), Positives = 549/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP + IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+VI M ++ D E++ Sbjct: 693 LREGDEVIGMEVL-------------------------EDNEKV---------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V Sbjct: 712 ------------LIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR ++ + R+ GV + ++E+V +V ++ Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806 >gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] Length = 828 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 555/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + D +E+ Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L ++E GFGKRTS+ D+ R GKGI+ +++ N G L + V+ Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R +E K F T ++G KRT +F +N G+RA K+ E L+ V + Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D II+ + G +R IR R+ GV +D+RVV RIR+++ V Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 >gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262] gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262] Length = 842 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M + L++D V Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR ++ + R+ GV + +DE+V +V ++ Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 >gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] Length = 876 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/908 (40%), Positives = 541/908 (59%), Gaps = 95/908 (10%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +++D++ I V + +M++SY+ YA++VI RA+PD+RDG+KPV RRIL+ M+++ Sbjct: 1 MATDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNN 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K + KCARI G+ MGKYHPHG+++IY A+ MAQDW++R L++G GNFGSVDGD Sbjct: 61 GPDKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL K + ++ DL KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 MATNIPTHNL EV+ V +I+N D +LD +M+I++GPDFPTG ILG GI+ A Sbjct: 181 MATNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTRGIEEA 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +RG+S IE + +I++TE+PY VNKA ++EKIAELVR+K+I I + Sbjct: 241 YRTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGIS 300 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 D S R+G R+VI+++R A+A+VILN+LY++T LQ F V M+AL +P+ L+ IL+ Sbjct: 301 DHSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQPKVLNLLQILEY 360 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 ++ +EEVV RRT+Y LNKA++RAH+L GL A+ +DEV+ IR S A+ L+ + Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 +E Q +AI+++RL LTGL RD ++ E + L Sbjct: 421 --------------------------FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDEL 454 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 +IKE IL+ R LLG+I+ E+ + D+ RRTRI + D+ ED I ++ V+ Sbjct: 455 QKKIKEYQAILADRKVLLGVIRDEIQIISDKFGDERRTRIGHDVYDITTEDLIPNDNNVL 514 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T+SHLGY+KR+ + AQ RGGKG G + D++ DLF+ +H ++FF++LG Y Sbjct: 515 TMSHLGYIKRMSPENFHAQNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYT 574 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P S ARG A+IN+L L GE+IT I+P E + N Y+ ATK G V++ Sbjct: 575 LKAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFKE---NQYLFMATKKGMVKKT 631 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 + F + +SG A+ L D+++ V+ + D+ L T G +RF +R GR Sbjct: 632 PVPAFRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRA-TGRG 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 S+GVRGI L D+VI M + AQ + Sbjct: 691 SMGVRGIWLDGEDEVIGM------------------QLQAQGK----------------- 715 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IG 839 ++L SE G GKRT +FRI R GKGI K NE G Sbjct: 716 ------------------YLLFSSENGIGKRTLFEEFRIQKRGGKGILCY---KPNERTG 754 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV V VND D+++L++ G +IR+ V+++ + R+ GV + + V S+ ++R+ Sbjct: 755 KLVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVM--DSVASIAKVRK 812 Query: 900 SEIVDEAE 907 + DE E Sbjct: 813 DD-SDEGE 819 >gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] Length = 821 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/891 (42%), Positives = 530/891 (59%), Gaps = 87/891 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE++ + V + EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N Sbjct: 2 DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG++++YDA R+AQD+S R L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF PNYDGS QEP VL A+ PN+LVNG GIAVGMAT Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+DG V +ID+PD+ LD LM I+GPDFPTGA ILGR GI AY+TGRGS+ Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + IE S + +IV+TEIPYQVNKA ++E IA+L R K I I LRDESDR+G Sbjct: 242 KMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGM 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+ + D+ILN+LY++T LQ F V M+AL P TL +L ++ R+ V Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR ++ L+KA RAH+L GL IA+ ++DEV++ IR S E A+ LM + Sbjct: 362 VTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSK-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q+ AIL++RL RLTGL RD I+ E L I Sbjct: 414 ------------------FDLSEKQSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +L+GII+ ELL K + RRT+I ++ ED I E MV+T++ GY+ Sbjct: 456 SVLADEHKLMGIIRDELLETKKKYADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP- 607 KR+ +VY Q +GG+G G+ +DED V L S H +VLFF++ G VY+ K + +P Sbjct: 516 KRINANVYHTQNKGGRGIKGMATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPE 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G A IN+L L+QGE++ ++ + + N + AT+ G V++ L +F Sbjct: 576 ANSRNSKGIAAINLLPLSQGEKVNALIDVDQVDPQAN---LFMATERGLVKKTSLQEFSN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + R+G IA+ L D + V + +I+L TK G + F + +R GRN+ GVRGI Sbjct: 633 VRRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPM-GRNTRGVRGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +LA+ D VI I L +DS V Sbjct: 692 TLAEDDMVIGADI----------------------------------LADDSQV------ 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 LTVSE+GFGKR + +++ R GKG++ ++ + G +V V V Sbjct: 712 -------------LTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITP--KTGVIVGVEVV 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERI 897 + ++IL++ G +IR + I + R T GV I ++++V +++ I Sbjct: 757 RNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTI 807 >gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988] gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561] gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S] gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161] gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818] gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003] gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes] gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818] Length = 842 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/889 (42%), Positives = 547/889 (61%), Gaps = 86/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +P+I + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F +I Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDSYLFFTTKHGVVKRTTLSQFAKI 633 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A++L DE++SV+ ++++ TK GQ + FP IRV GR + GVRGI Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D+VI M + L++D V Sbjct: 693 LREDDEVIGMEV----------------------------------LEDDEKV------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ V Sbjct: 712 ------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVT 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + ++L++ G LIR ++ + R+ GV + +DE+V +V ++ Sbjct: 758 GEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806 >gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27] gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27] Length = 805 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/882 (42%), Positives = 530/882 (60%), Gaps = 92/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG Q GV +K+VK A Sbjct: 4 VLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMGKYHPHG+AAIYDAL RMAQ W+LR LI+GQGNFGS+DGDPPAA+RYTE RL Sbjct: 64 KIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ KDTVDFRPNYDGS +EP VL A PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD VA+I+NP I L+ +M + GPDFPTG L + GIK AYATGRGS+ +R Sbjct: 184 SEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGK-LSKKGIKEAYATGRGSLKVRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ G R +VVTEIPYQVNKA+++ +IA LV+ K+I DI LRDESDRQG R+ IELK Sbjct: 243 VEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ V+LNQLY++T+LQ+ F+VN++A+ +P+ +L+ +++ ++ R+EVV RR+ + Sbjct: 302 RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSLF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAHVL GL IA+ ++DEV+ +IR S + AR LM+R Sbjct: 362 ELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL RL L R+ + E L EI IL + Sbjct: 407 -----------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEA 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RLL +K +LL VK++ RRT I E ED I E MV+T++ G++KR+PL Sbjct: 456 RLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLES 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG ++ED T +F+ H +L F++ G VY+ KV+ LP QARG Sbjct: 516 YRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671 + ++L L + E + ++ S L ++VFAT+ G V+R L ++ + ++ Sbjct: 576 VHVKSLLPLAEDEEVAALL-------SVRGLDQEGHLVFATERGLVKRTALKEYQNLGQA 628 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA++L D ++ V E++ +L T+ GQ +RFP+ +R GR++ GV G+ K Sbjct: 629 GLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKK 687 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 + + +V+ D Sbjct: 688 PEDRVVSLVVVKPGEMVD------------------------------------------ 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L+VS +G+GKRT ++ + R G G+ VS ++G L A+ V + Sbjct: 706 --------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVS--TKVGRLAALLKVRGGE 755 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++++S +G IR PV EIR SRAT GV + + +D+ V S Sbjct: 756 DLLVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVAS 797 >gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] Length = 838 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/867 (42%), Positives = 536/867 (61%), Gaps = 54/867 (6%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYTECRLQ A LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HNLGE+VDG VA+I NP+I Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268 LM+ I PDFPTG ILGR+GIK+AY TGRGSI +RGV+ +E + D+E I+V Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAE+V +KRI I+D+RDESDR+G RVVIELKR A V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQS F NM+AL G +P+ T+ L+ F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+ NLD V+ +IR + + TA+ +L+++ Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQ--------------------------FG 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSE Q AIL+++L RLT L I+ E L + I + DIL++RSR+L II+ E L + Sbjct: 395 LSEPQADAILQMQLRRLTALEAQKIQAEHEELQVRIADLQDILANRSRILEIIETEALQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K DTPRRT I E +++D D I E V+ V+ GY+KR+P+ + AQ R +G++ Sbjct: 455 KTTHDTPRRTAIQEVEGELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAA 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 M+++D V H S+LFFS G VY + +++P S ARG ++ +L + E Sbjct: 515 ARMKEDDGVEHFLTCCDHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+++P E +++Y+V T+ G +++ L F I +G IA+ L D++ V Sbjct: 575 KITSVVPVSE---FTDDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747 C E+ I++ + G + F ++ GR + GV+ + L D++ISM I Sbjct: 632 LCRAEDSIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRSKDELISMDI------- 684 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + +R + + ++EE+ + ++D+S E ++ E E + ++L V+ G Sbjct: 685 -------LPAQVVERLIATANSEEVET-EDDTSDE--VNGEEVHETAGQGPWVLVVTTGG 734 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 GKR FR+ NR+G G+ + ++ L A+ VN+ D++++V+ +G +IR + Sbjct: 735 LGKRVPVSQFRLQNRAGMGL--VTIKFRHKKDKLAALRVVNEGDELMMVTMRGIIIRQAL 792 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894 + I SR G+ + +++ + +V Sbjct: 793 DAISPQSRMATGIRVQRLDEEDAIAAV 819 >gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2] gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2] Length = 815 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/887 (42%), Positives = 543/887 (61%), Gaps = 86/887 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M +G N+ Y K AR+ Sbjct: 4 TISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARV 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMAR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 L D+ K TVDFRPNYD + QEP VL + PN+L+NG GIAVGMATNIP HNL E Sbjct: 124 LCSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++DGCV ++DNP ++ +M ++GPDFPTG ++ G G+ +AY TGRGSI IRGV IE Sbjct: 184 LIDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGGQGLYDAYTTGRGSIKIRGVVEIE 243 Query: 258 KTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +T G +E IV+ EIPY +NK+ ++EKIA LV EK+I +ADLRDESDR+G R+V++LKR Sbjct: 244 ETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKR 303 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 GA AD+I+N LY+YT L++ F +NM+A+ G +P L +L F+ R EVV+RRTK+ Sbjct: 304 GAIADIIINALYKYTPLETSFGINMMAVVGKRPMLLNLKSVLDYFLDHRREVVIRRTKFD 363 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L+K R H+L GL IA+ N+DEVV++IR S +P+ A+ LM R Sbjct: 364 LDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMAR---------------- 407 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LSE+Q +AIL++RL +LTGL D + EL L +I+ IL++ Sbjct: 408 ----------FSLSEIQAKAILDMRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDV 457 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSV 555 L +I+ EL +K+ TPRR+ ++ D D ED I E+ VVT+S GY+KR PLS Sbjct: 458 LKSVIRDELKEIKENYSTPRRSELLTANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSN 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y AQRRGGKG SGV D DF+ + + H ++ F++LG ++K K ++P GS A+G Sbjct: 518 YTAQRRGGKGISGVQTGDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKG 577 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + N+L L++ E ITT + E + ++ + +F TK G ++R+ + + +G A Sbjct: 578 GHVANLLPLDKDECITTALSLREFD---DDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRA 634 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V + D +L T+ G +RF I+ R GR + GV+G++L D+V Sbjct: 635 VNLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPL-GRTTAGVKGVALRGDDEV 693 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ C +++GD E Sbjct: 694 VA---------------C----------VVTGDPE------------------------- 703 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++Q +LTVS GFGKRT +R +R GKGI ++ N+ G +V VN++D +IL Sbjct: 704 RDQ-LLTVSAGGFGKRTGIDQYRQQSRGGKGI--LNMRLTNKTGKVVGARMVNESDDVIL 760 Query: 856 VSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ +IR+ V+E+ + RAT+GV + + V+ E + E E Sbjct: 761 LTSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGE 807 >gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] Length = 821 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/901 (42%), Positives = 541/901 (60%), Gaps = 85/901 (9%) Query: 8 SDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +D++ G I V I EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ Sbjct: 2 ADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 NK Y K ARI G+V+GKYHPHG+ ++YDA R+AQD++ R LL++G GNFGS+DGD A Sbjct: 62 PNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG GIAVGM Sbjct: 122 AMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EV +G +IDNPD+ +D LM I+GPDFPTGA+ILGR GIK AY+TGRG Sbjct: 182 ATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ +R + IE+ + + +IVVTEIPYQVNKA ++E IA L R+K I I LRDESDRQ Sbjct: 242 SVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQ 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIEL+ D++LN+LY++T LQ F V M+AL P L +L ++ R Sbjct: 302 GMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHRL 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 V+VRRT++ LNKA RAH+L GL IA+ ++DEV+ IR S E AR LMQ+ Sbjct: 362 NVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q AIL++RL RLTGL R+ I +E L I++ Sbjct: 416 --------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIED 455 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+S +R IIK EL +K + PRR+ I D++ ED I E+MV+T++ G Sbjct: 456 LKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ +VYR Q +GG G G+ +++D+VT + V TH ++LFF+S G Y+ K + + Sbjct: 516 YIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEV 575 Query: 607 P-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P GS +RG A++N+L L GE +TT++ E N+ + T+ G V+R + ++ Sbjct: 576 PEAGSRNSRGTAMVNVLPLAVGESVTTMIDL---ERIHENVNLFMVTEFGVVKRTAIEEY 632 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I RSG A+ LD D ++SV T DIL+ TKLG +R +R+ R + GVR Sbjct: 633 RNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGVR 691 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L GD V+ + L++D S Sbjct: 692 GIKLKTGDVVVGAGV----------------------------------LESDES----- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E + T+SE+G+GKR + + + R G G + ++ ++ G +VAV Sbjct: 713 -----------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAVE 759 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904 V+++D+++L+S++G +IR +N+I + +A GV + + ++V S+ I SEI Sbjct: 760 VVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIES 819 Query: 905 E 905 E Sbjct: 820 E 820 >gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002] gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 809 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/894 (41%), Positives = 562/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I++ D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +R GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT +++++++G+ +V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGR---------------IVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I+L S +G IR+ V++I + R T+GV + D +V S+ RIR +E Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809 >gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 871 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/889 (40%), Positives = 535/889 (60%), Gaps = 83/889 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNPDID + LM+ I+ PDFPTGA I G G+K+AY TGRG IV+R + Sbjct: 192 AEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIYGLQGVKDAYETGRGRIVLRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IV++EIPY VNKA ++E IA+LV+E R+ I++ DES RQG R+V+++K Sbjct: 252 IE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T LQS FSVN +AL +P TL +K FV R +V +RRTKY Sbjct: 311 RDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRHDVTIRRTKY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV+IIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL + + E L I IL Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT I+ + ED + +V+TVSHLGY+KR PLS Sbjct: 465 ECKRVMKLELEEVKEKFGDVRRTEIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + Q RGG G G RD+DF ++ + H ++LFF+ G Y K + +P G ++G Sbjct: 525 FHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ + + + D N Y+VFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ + DE++ V +N +++ + G+ V F + +R GR + GVRG+ L GD Sbjct: 645 NAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTM-GRTATGVRGMRLDGGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV+ ND E Sbjct: 704 DAVVGMIVV----------------------------------NDPETE----------- 718 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V D++ + Sbjct: 719 -----TVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESE 901 ++++ G IR+ V R+ RAT+GV + + +K V+ SV +++ S+ Sbjct: 772 MIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSD 820 >gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] Length = 843 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/894 (41%), Positives = 555/894 (62%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K A Sbjct: 4 INNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y + RMAQD++ R LI G GNFGS+DGD AA RYTE R+ Sbjct: 64 RIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEARM 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ LL+D+ K+T+DFR N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNL Sbjct: 124 AKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDG +A+IDNP++ LME I+GPDFPTG +I G GIK+AY TGRG + +RG Sbjct: 184 GEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGKIE 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + I++ EIPYQ+NKA ++EKIAELV++K+IV I+DLRDESDR G RVVIELK Sbjct: 244 IEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G ++ILN+LY+YT LQS F + M+AL P L I++ ++ R EV+ RRT++ Sbjct: 304 KGEEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRTQF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L G IA+ N+D ++ ++R + + AR +L+++ Sbjct: 364 NLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYG------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +++Q RAIL+++L RLTGL RD + E + I E +IL++ S Sbjct: 411 -------------FTDIQARAILDMKLQRLTGLERDKVEAEYQEIEKYISELREILANDS 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ I+K EL +KD+ D RRT I + ++ ED I E++++T ++ GYVKR+ LS Sbjct: 458 KIYEIMKTELQELKDKYDDDRRTVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMELSK 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQ+RGG+G + ++DFV ++ +++ F++ G VY KV+ +P S Q+RG Sbjct: 518 YKAQKRGGRGVASQNTVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRG 577 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + NI++L E+I I+ D S+ N V+F TK G V++ LS+F IN SG A Sbjct: 578 RLIGNIINLKTDEKIRAIIK-TRDFSNENE--VIFVTKDGTVKKTNLSEFKNINSSGLKA 634 Query: 676 MKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 +KL D+I+ V E E +L+ T+ G +RF +R GR+++GV+G++L +G Sbjct: 635 IKLKENDDIIYVGLIEDIVNEQ-LLIATQAGYSIRFSCEELRA-TGRDTMGVKGLTLREG 692 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+S + I ++N S Sbjct: 693 DTVVSALL-------------------------------IKDIENSS------------- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ILT++E G+GKRT ++ + +R GKG+ S + G++V+V V+ +++ Sbjct: 709 -------ILTITENGYGKRTKIDEYPLQSRIGKGVINLRCSA--KTGSVVSVLSVSTDEE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905 ++ ++ G +IR+ V++I + RAT+GV+I KDE+VVS+ R++ E DE Sbjct: 760 LMAITSSGVVIRIAVDDIVLYGRATQGVIIMKVHGKDEKVVSITRVKSEENEDE 813 >gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] Length = 818 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/885 (42%), Positives = 555/885 (62%), Gaps = 89/885 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L L++GE + TI+ +D+ S Y+ F T+ G V+R S+F I Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIISQSGHDDKES----YLFFVTRQGVVKRTLESEFSNI 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G A+ L DE+++V NDI++ TK G VRF SA+R + R++ GVRG++ Sbjct: 632 RQNGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVN 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+V+ A R IS D E Sbjct: 691 LREGDEVV----------------------GASR--ISDDQE------------------ 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + VN Sbjct: 709 -----------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ I++++D G +IR V I RAT GV I +D ++++ Sbjct: 756 GDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAKLMT 800 >gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] Length = 837 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/729 (47%), Positives = 487/729 (66%), Gaps = 34/729 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ ++I++EM+ S+L YA++VI+ RA+PD+RDG+KPVHRRIL+ M +G+ +K Y K A Sbjct: 9 VSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL D+ KDT+D++ NYDG+ +EPVV AR+PN+LVNG GIAVGMATNIP H+L Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHHL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 GE +D +A+ NPDI +D +ME + GPDFPT ILGR+GI+ AY TG+GSI IR Sbjct: 189 GETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSITIRAKL 248 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +IE+ D+E I+VTE+PYQVNKA ++EKIAELVR+K++ I DLRDESDR G R+VIEL Sbjct: 249 NIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRIVIEL 308 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R A+A+V+LN LY++TSLQ+ F +NM+AL +P + L ++ ++ ++ RRT+ Sbjct: 309 RRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVIIKRRTQ 368 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA RAH+L GL IA+ +LDEV+ +IR S + AR LM+R Sbjct: 369 FELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMER-------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL R+ I +E L I+E IL+ Sbjct: 415 ------------FKLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELKAILADE 462 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++L II++EL +K++ RRT IV G EDED I E++V+T++H GY+KR+P Sbjct: 463 EKVLEIIREELTEIKEKYKEDRRTEIVAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPA 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR Q+RGG+G G+ ++DFV L STH ++LFF++ G VYK K + +P S A Sbjct: 523 STYRTQKRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTA 582 Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G +IN+L + +GE + ++ + DE + Y+ F TKHG +R L F I + G Sbjct: 583 KGIPIINLLQVEKGEWVNAVISVNQFDEEA----YLFFTTKHGIAKRTSLEKFRNIRKGG 638 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++SV + ++++ TK G +RF + IR GR + GV+GISL Sbjct: 639 LIAVGLREEDELISVRLTDGQKEMMIATKNGYLIRFEETQIRSM-GRTAAGVKGISLRGD 697 Query: 733 DQVISMAIV 741 D V+SM I+ Sbjct: 698 DVVVSMEII 706 >gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL] gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL] Length = 809 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/894 (40%), Positives = 565/894 (63%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I+VTE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++E++ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+QR Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +++Q +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTDIQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I++ D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R++DFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 R+GK A+ L D ++ V+ + ++++L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT +R+++++GK +V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YRVTDKTGK---------------IVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 D D+I++ S +G IR+ ++++ + R T+GV + +D +V S+ RI+ E Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIKVSSIARIKAEE 809 >gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr. CH1] gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 817 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/900 (41%), Positives = 551/900 (61%), Gaps = 88/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+L II++EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S + Y+ F T+ G V+R ++DF I + Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVEQDHSQ--DSYLFFTTRLGVVKRTSVADFANIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ +V +D DE + + +R L S Sbjct: 693 DGDQVVGAGVV----SDNDEVLVITEKGYGKRTLAS------------------------ 724 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ R GKGI+ ++++ N G L + VN Sbjct: 725 -------------------------EYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V +VE + E+ DE E Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 817 >gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 818 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/883 (42%), Positives = 554/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNPD+ LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL R+ I+ E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH V F ++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE + TI+ + N Y+ F T+ G V+R K S+F I + Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTII--SQSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V +DI++ TK G VRF SA+R + R++ GVRG++L Sbjct: 634 NGLKALNLKDGDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ A R IS D E Sbjct: 693 EGDEVV----------------------GASR--ISDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++EKG+GKRT + ++ R GKGI+ ++++ N G L + VN + Sbjct: 709 ---------VLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GQLAGLATVNGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++D G +IR V I RAT GV I +D ++++ Sbjct: 758 EDIMVITDTGVIIRTNVASISQTGRATLGVKIMRLDQDAKIMT 800 >gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] Length = 818 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/896 (40%), Positives = 542/896 (60%), Gaps = 97/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF+PN+D + +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN + ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + I+VTE+PY VNKA ++EKIA+LV+EK+I I L DES R+G R+ Sbjct: 249 RAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFR 365 IEL+R +A+VILNQLY++T LQ F V M+A+ + +P+ L+ +L ++ + Sbjct: 309 NIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDYYLKHQ 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+ LM R Sbjct: 369 EDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMAR----- 423 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L++ Q +AI+++RL LTGL R+ + E L I Sbjct: 424 ---------------------FELTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIG 462 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E IL+ LLG+IK+E+ + D+ R+T I D ED I E++V+T++ L Sbjct: 463 ELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDEFDFTVEDLIPEENVVITMTRL 522 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ +++Q RGGKG G+ DED + +LF+ STH ++FF++LG VY+ K + Sbjct: 523 GYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYE 582 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSD 664 +P ARG A+IN+L L E+IT ++P E +N + Y+ ATK G V++ ++D Sbjct: 583 IPEAGRTARGTAIINLLQLAPEEKITAVIPIRE----YNEDHYLFMATKKGLVKKTPITD 638 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + ++G A+ L DE++ V+ DILL T GQC+RF + +R GR S+GV Sbjct: 639 YANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRS-TGRVSMGV 697 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 GI+L GD+V+ M + Sbjct: 698 IGINLMDGDEVVGMQL-------------------------------------------- 713 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 CQ +++L VSEKG GK T+ +F++ NR GKG++ + + + G ++A Sbjct: 714 ----DCQ-----GEYMLIVSEKGMGKLTAMEEFKVQNRGGKGVKCYKI--LEKTGNVIAA 762 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 VN + I++++ +G +I++P ++I + +R T GV + + KD +V S+ ++RES Sbjct: 763 KAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASITKVRES 818 >gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425] gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425] Length = 864 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/918 (41%), Positives = 552/918 (60%), Gaps = 76/918 (8%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 S E ++ I + + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 4 SQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTP 63 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGS+D DPPAA Sbjct: 64 DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAA 123 Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTE RL+ LL D+ ++TVDF N+DGS QEP+V+ AR P +L+NG GIAVGM Sbjct: 124 MRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGM 183 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNLGE+++G +A+I NP+I + LM+ I GPDFPTGA ILG TGI+ AY TGRG Sbjct: 184 ATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRG 243 Query: 247 SIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 SI +RGV+ IE + DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDE Sbjct: 244 SITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDE 303 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIELKR A V+LN LY+ T LQ F NM+AL +P+ TL L F+ Sbjct: 304 SDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFL 363 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FR +V+ RRT+Y KA +R H+L GL IA++NLD V+ +IR + + TA++EL+ Sbjct: 364 KFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELI---- 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 SY LSE Q AIL+++L RLT L + I+ E L Sbjct: 420 --------------DSYG--------LSEPQADAILQMQLRRLTALEAEKIQREHEDLVA 457 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + DIL R+L II+ E+ +K +PRRT I + +++ D I + V+ V Sbjct: 458 QIADFQDILDRPERILSIIQTEVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILV 517 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+KR+P+ + AQ R G+GR G ++++D V F H +LFFS G Y K Sbjct: 518 TEQGYIKRMPVDTFEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLK 577 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 +++PIGS ARG ++ +L + + E+IT+++P F EDE Y+V T G +++ Sbjct: 578 AYQIPIGSRNARGVPIVQLLPIPREEKITSVVPVDEFREDE------YLVMLTAGGYIKK 631 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718 LS F I +G IA+ L++ D++ V + + I++ ++ G + F ++ G Sbjct: 632 TALSAFSNIRANGLIAIALETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLG 691 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVR ++L GD++I M I+ A + +L Sbjct: 692 RATRGVRAMALRAGDELIGMDILPSAI--------------------------VANLAVA 725 Query: 779 SSVEGNISEERCQELKLKE---------QFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +S SEE +E+ L+E ++L V+ GFGKR FR+ NR+GKGI A Sbjct: 726 TSDAEVESEEGAEEMPLEEIPINADNPGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITA 785 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 T L A+ VN D++++V+++G +IR V I SRA GV + +++ Sbjct: 786 TKFKTRQTQDQLAALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEED 845 Query: 890 RVVSVERIRESEIVDEAE 907 + +V + +E+ D E Sbjct: 846 SIAAVTIVPSTELTDSEE 863 >gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514] gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514] Length = 893 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/920 (40%), Positives = 554/920 (60%), Gaps = 87/920 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++ DE++NS+L Y+++VI+ RA+PD+RDGLKP RRILF M + + N+++ KCA Sbjct: 24 VAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHRKCA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ G YHPHG A IY L MAQ W++R LI+GQGNFGS++GDPPAA RYTE R+ Sbjct: 84 KICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTEARM 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 L+ D+ KDTVDF PNYD + +EP V A +PN+LVNGG GIAVGMATN+ HNL Sbjct: 144 THLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAPHNL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG A ID+P I + LM+ I+GPDFPTG ++ G GIK +ATGRG I +RG Sbjct: 204 GEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVCGLEGIKKYFATGRGQIKMRGKVD 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ REQIV++ +P+ VN A + E+IAELV EK I DI+ LR+ESD + R+VIELK Sbjct: 264 VEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESD-ENTRIVIELK 322 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS V++N LY +TSL+S F+VN +A++ +P+ L ++ A++ R EV++RRT++ Sbjct: 323 RDASPKVVINNLYNHTSLESSFAVNALAIDHGRPKTLGLKDLINAYIEHRREVIMRRTRF 382 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RA L G IA++N+DE +RIIR S N E AR +L+ +N ++ + LI Sbjct: 383 ELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQIGILIR 442 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D + ++G SE Q AIL+LRL +LTGL D +R E +L IK+ LDIL+ S Sbjct: 443 DEARL--TNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILAKES 500 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L IIK EL +K++ TPR T +V +M ED I E +++T++H G +KR +S Sbjct: 501 RVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTNVSS 560 Query: 556 YRAQRRGGKGRSGVVMRD--------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 YRAQRRGGKG G+ R+ +DF+ LF TH ++FF++ G V+ E+V +P Sbjct: 561 YRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVHEIP 620 Query: 608 IGSPQARGKALINILSLNQGERITTIM-------PFPEDESSWNNLYVVFATKHGNVRRN 660 + ++G+++ N+L L E+I ++ P ED++ + + FAT+ G V++ Sbjct: 621 DMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTVKKT 680 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN------------DILLTTKLGQCVRF 708 L+DF + + G IA+ ++ D ++ V+ D++L T+ G +RF Sbjct: 681 SLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMSIRF 740 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S +R GRN+ GVRGI+L K D V+++A VL DA L++G Sbjct: 741 AESNVRSM-GRNATGVRGINLEKTDAVVALA-VLVPDATL---------------LVAG- 782 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 E G GKRT ++R+ +R GKGI Sbjct: 783 ------------------------------------ENGIGKRTDFGEYRVQSRGGKGII 806 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + ++ G +V V DND+I+L+++ G ++R+ V +IR A R T+GV + + Sbjct: 807 TMKTN--DKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINLEAG 864 Query: 889 ERVVSVERIRESEIVDEAES 908 +++ ++ + SE +EAE+ Sbjct: 865 DKLQAISPVI-SEEKEEAET 883 >gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] Length = 824 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/900 (41%), Positives = 551/900 (61%), Gaps = 88/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 9 QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 69 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+DNP+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 189 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ T +Q+ FS NM+A+ G P+ +L IL A++ ++EVV R Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQGGVPKILSLREILLAYIEHQKEVVTR 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 369 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL D I++E + L I + DIL Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLEHDKIQSEYDELIALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+L II++EL VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 463 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 523 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++GE I TI+ +D S + Y+ F T+ G V+R ++DF I + Sbjct: 583 RTAKGLPIVNLLKLDEGETIQTIINVEQDHSQ--DSYLFFTTRLGVVKRTSVADFANIRQ 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V D+++ TK G VRF +A+R + R + GVRG++L Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 GDQV+ +V +D DE + + +R L S Sbjct: 700 DGDQVVGAGVV----SDNDEVLVITEKGYGKRTLAS------------------------ 731 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++ R GKGI+ ++++ N G L + VN Sbjct: 732 -------------------------EYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907 + ++++++ G +IR V I R+T GV + ++ ++V +VE + E+ DE E Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 824 >gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12] Length = 810 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/890 (40%), Positives = 541/890 (60%), Gaps = 91/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I++ I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K A Sbjct: 4 ISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD AA RYTE R+ Sbjct: 64 RIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARM 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL+D+ K+T+DFR N+D S EP VL ++ P++L+NG GIAVGMATNIP HNL Sbjct: 124 SKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VDG + +IDNPDI LME I+GPDFPTG +I G+ GI++AY TGRG I +RG Sbjct: 184 GELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGKVK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + I++ EIPYQ+NKA ++E+IA LV+EK+I I DLRDES+R+G RVVIELK Sbjct: 244 IEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G +++LN+LY+YT LQS F V M+AL P+ TL +L ++ R +V+ RRT + Sbjct: 304 KGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKILTLKQMLSEYIGHRFQVITRRTLF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ RAH+L G IA+ N++ ++ +IR S + A+ +L+++ Sbjct: 364 DLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYA------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E+Q ++IL++RL RLTGL R+ + E L I E DILS S Sbjct: 411 -------------FTEIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILELQDILSHDS 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ I+K+ELL VK+ RRT I E +++ ED I E+M++T ++ GY+KR+ + Sbjct: 458 KIYDIMKKELLEVKEVYGDNRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEANK 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y++Q RGGKG SG+ D+D V + S +++ F+ G VY KV++LP S Q+RG Sbjct: 518 YKSQNRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRG 577 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + + NIL + + E+I I+ F +++ ++F TK G V++ L +F IN G Sbjct: 578 RLISNILRIGEEEKIRAIIKTRIFDKEKE------LIFVTKQGIVKKTSLEEFKNINTGG 631 Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 IA+K D+++ V +N++ + T+ G VRFP +R GRN++GV+GI L + Sbjct: 632 LIAIKFKEEDDLIYVGLVEASDNEVFIATRRGFAVRFPNDNVRP-TGRNTMGVKGIELRE 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+S ++ + D Sbjct: 691 KDEVVSALLIKEKEMD-------------------------------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ILT++E G+GKRT ++ NR GKG+ ++ + G +V+V D + Sbjct: 707 --------ILTITENGYGKRTRLDEYPSHNRGGKGV--INLRCNEKTGNIVSVLSAFDEE 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++ ++ G +IR P++ I SRA +GV+I A DE+V S+ RI+ E Sbjct: 757 ELVCITSNGVIIRTPMHSISRFSRAAQGVIIMKVASDEKVASITRIKAEE 806 >gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] Length = 850 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/900 (40%), Positives = 546/900 (60%), Gaps = 86/900 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ + M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 11 EEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDKPHK 70 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R LI+G GNFGSVDGD PAA RYTE Sbjct: 71 KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMRYTE 130 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ KDT+++R NYD + +EP VL +R PN+LVNG GIAVGMATNIP Sbjct: 131 ARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATNIPP 190 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 H+LGEV+ ++ NPD+ LME++ GPDFPTG ++LG++GI+ AY TGRGSI +RG Sbjct: 191 HHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRAYETGRGSITVRG 250 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ +E+I++TE+PY VNKA ++E+I++L EK+I I L DESDR+G RVVI Sbjct: 251 RVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGMRVVI 310 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E++R SA V+LN LY+ T LQS F NM+A+ G +P+ +L IL+ ++ +EEV+ RR Sbjct: 311 EVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRHYLNHQEEVIRRR 370 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + KA DRAH+L GL +A+ ++D +V I+R S + + A+ M Sbjct: 371 SIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYG---------- 420 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LS+ Q +AIL++R+ RLTGL R+ I E L IKE +IL+ Sbjct: 421 ----------------LSDKQAQAILDMRMVRLTGLEREKIDAEYADLQALIKELNEILA 464 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S R II+QELL ++ + D PRRT ++ G L +EDED I +ED+V+T++ GY+KR+ Sbjct: 465 SEERRYEIIEQELLEIQQKFDNPRRTELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRL 524 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S ++ QRRGG+G G+ + D+DFV ++ STH S+LFF++ G VY+ K + +P S Sbjct: 525 ANSEFKTQRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSR 584 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L+++ E+I I+ PE + + L+ F T G V+R KLSDF I + Sbjct: 585 TAKGLPVINLLNIDSTEKIQAIISVPESDETERFLF--FTTLRGTVKRVKLSDFKNIRTN 642 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A++L D+++ V + ++ I+L T G V F +R GR + GVRG+SL Sbjct: 643 GLRAIQLREDDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAM-GRTAAGVRGVSLRD 701 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D VI M I ++ +R ++ Sbjct: 702 DDYVIGMDI-----------------LTPEREVL-------------------------- 718 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 VSEKG+GKRT++ ++ + R GKG++ +++ N G LV + V + Sbjct: 719 ----------VVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKN--GPLVCLRTVTGEE 766 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910 ++++++KG +IR +++ R GV + +D V S+ + RE E + S+E Sbjct: 767 DLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDREEEAEETVTSSE 826 >gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740] gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes] Length = 828 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/899 (42%), Positives = 553/899 (61%), Gaps = 92/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV Y K A Sbjct: 11 IKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAAYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 71 RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +A+ +L D+ K+TVDF NYD + +EP VL +R PN+LVNG GIAVGMATNIP H L Sbjct: 131 TQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNIPPHRL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ + +ID+P +L+ LM + GPDFPTG +I G+ GI AY TGRG I +R +H Sbjct: 191 DEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIYGKQGIIEAYRTGRGRIRVRAKTH 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK ++ IV+ E+PYQ NKA ++E+IAEL +EK I IA++RDESDR+G RVVIELK Sbjct: 251 IEKNK-TKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRVVIELK 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ++++LN L++ T++++ F + ++A++ +P+ FTL+ +L F+ R+ VV+RRT + Sbjct: 310 KDAMSEIVLNHLFKSTAMETTFGIILLAIHNKEPKIFTLLELLNLFLNHRKTVVIRRTIF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE+V +IR S + + A+ LM R Sbjct: 370 ELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMAR--------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q++AIL++RL RLTGL R+ I NE L EI+ IL S Sbjct: 415 -----------FGLSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEE 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L IIKQEL+ ++++ T R+T I E ++ ED I E VVT+SH GYVKRVPL Sbjct: 464 KLNEIIKQELIEIREKFSTKRKTTIEEDYESIDIEDLIPNEPTVVTMSHRGYVKRVPLRS 523 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ D+DF+ F+ +TH ++LF + G +Y KV+R+P A G Sbjct: 524 YEKQNRGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIG 583 Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N++ + E+I T F ED+S ++F TK+G V+R+ LS+F I G Sbjct: 584 KAVVNLIQIGADEKIMATITTQDFNEDKS------LMFFTKNGIVKRSNLSEFKNIRSVG 637 Query: 673 KIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ LD DE+++ + +I + T G C+RFP+ IR GR + GV GI + Sbjct: 638 IRAINLDDNDELVTARIIDSNVKEIFVATYKGMCIRFPVEDIREI-GRVARGVTGIRFKE 696 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D DY ++G T I +E+ + Sbjct: 697 -------------DEDY----------------VAGAT--------------TIGDEKEE 713 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +LTVSEKG GKRT + ++R+ +R GKG+ A ++ + G LV V V+++ Sbjct: 714 --------LLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTP--KTGQLVGVVNVDESM 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 ++L++ G +IRV + IR A R T GV+I + + D++VVS+ R + E +E S E Sbjct: 764 DLMLLTSTGKMIRVDMQTIRKAGRNTSGVIIVNVS-DDKVVSIARCPKEENPEEEASDE 821 >gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] Length = 911 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/890 (42%), Positives = 539/890 (60%), Gaps = 75/890 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTE RL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTESRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q LL D+ +TVDF N+DGS QEPVVL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG VA+IDNP + LME I GPDFPTGA I+G GI+ AYATGRGS+ +RGV+ Sbjct: 188 LGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVTMRGVA 247 Query: 255 HIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE +T G DRE I++TE+PYQ NKAA++EKIA++V E R+ I+DLRDESDR G R+ Sbjct: 248 TIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQ+ F VNM+ L +P+ +L+ L+ F+ FR E + Sbjct: 308 VIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFRIETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++R H+L G IA+ NLD V+ +IR S + +A+ EL++ Sbjct: 368 RRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIE----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SY S Q AIL+++L RLT L + I+ E +L +I + DI Sbjct: 417 -------SYG--------FSATQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++R R+L IIK+E++ +++ RRT I D+ D I E + + V+ GY+KR Sbjct: 462 LANRDRILAIIKEEVIQIRNAYANERRTLIKADENDLSDISLIANEQVAILVTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + AQ R +G+SG M+D+D + +H VLFFS G Y + +++P S Sbjct: 522 MLVDTFEAQNRATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESS 581 Query: 611 PQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G L+ +L + + E++T+++ F ED+ Y+V T+ G +++ LS F + Sbjct: 582 RTAKGYPLVQMLPIPKEEKVTSVIGVSEFSEDD------YLVMLTQGGFIKKTALSAFNR 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 I +G IA+ L+ DE+ V T ++ +L+ ++ G + F ++ GR + GV+ Sbjct: 636 IRTNGLIAISLEDGDELRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKS 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +SL +GDQ+ISM I L S EE+ +D S Sbjct: 696 MSLREGDQLISMDI-----------------------LPSQVVEEVEGAIDD-------S 725 Query: 787 EERCQELKLKEQ--FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +E EL +Q ++L VS G GKR +FR+ NR+G G+ A K + LVA+ Sbjct: 726 DEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKFRKDGD--ELVAL 783 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +D++++VS +G ++R V+ I + SR GV + D+ + +V Sbjct: 784 RIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAV 833 >gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411] gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411] Length = 812 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/883 (41%), Positives = 532/883 (60%), Gaps = 89/883 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 +K I V I D MQ SYL Y+++VI+GRAIPD RDGLKPVHRRIL+ M ++ +E NK Y Sbjct: 7 DKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPYK 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+V+GKYHPHG+ A+YDAL RM+QD+S+R LI+GQGNFGS+DGD PAA RYTE Sbjct: 67 KSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A +L DL K++VDF PNYD S +EP VL PN+L+NG GIAVG AT IP Sbjct: 127 VRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIPP 186 Query: 193 HNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +NL E++D C+A +D + +I D ++ I+GPDFPTG + IK AY G G I +R Sbjct: 187 NNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKSIKEAYKKGIGKITLR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 EK +R+ +VV EIPYQVNKA +L+ IA+LV++K++ IADLRDES+++G R+V Sbjct: 247 AKVKEEKIK-NRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+K+ VILN+L++YT+LQ+ F VNM+AL G P + + FV R +VV R Sbjct: 306 IEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVKR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT +LL+KA+DRAH+L GL I + N+DEVV II+ S + + AR L +R Sbjct: 366 RTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKER----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS+ QT+AIL+++LARL L + + +E N + +I+ IL Sbjct: 415 ---------------FKLSDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 RS L G+IK EL+ VK R+T+I++ ++D+ ED I E +++T S GYVK V Sbjct: 460 KDRSVLKGVIKDELVYVKQTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKAV 519 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL VY Q RGGKGR D D++TD+F+ ++ ++L F++LG VY K + +P SP Sbjct: 520 PLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSP 579 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G+ ++NIL+L E + TI+P E +S + FAT G V+R+ F I + Sbjct: 580 SAKGRPIVNILNLQPQEFVKTIVPISEADSLF------FATAAGTVKRSSFRHFENIPSN 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GKIA++L+ +D ++SV + + +++++TT+ G CVRF ++R GR + GVRGI+L++ Sbjct: 634 GKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSVRDM-GRAAAGVRGINLSE 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S N ++++ Sbjct: 693 GDSVVSAF--------------------------------------------NFNQDKHT 708 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L + VS+ G GK D R NR KG+R K+ E ++ + D Sbjct: 709 KL-------IVVSQTGLGKLLRVSDIRKVNRGAKGVRCI---KLKENDSVAGSLSLKDTG 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +I+V+ G +I++ + I + SRA +GV + + + + VVS+ Sbjct: 759 DVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSI 801 >gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 813 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/883 (41%), Positives = 539/883 (61%), Gaps = 84/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++++SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G +N+ Y K A Sbjct: 1 MSNISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSA 60 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YDAL RMAQD+++R L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 61 RVVGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARM 120 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A L D+ K+TV+FR NYD + EP VL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 121 SRLAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNL 180 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ++DNP+ ++ LM+ I+ PD PTGA I G+ AY TGRGS IR Sbjct: 181 GEVIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLKGVLEAYRTGRGSFKIRSRLD 240 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E S E IV+ E+PY +NKA ++EKIA LV +K+I I+DLRDESDR G R+VI+LK Sbjct: 241 VETRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLK 300 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +GA +DVI+N+LY+ T+L++ F +NM+A+ +P+ L +L+ F+ R+EV++RR+++ Sbjct: 301 KGAISDVIINKLYKLTALETSFGINMMAVVNNRPQLLNLKQVLEYFLEHRKEVILRRSRH 360 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ N+DEVVR+IR S AR +L+ Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLI----------------- 403 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S+++ LS+VQ +AIL++RL RLT + R+ + E L +I+ IL + Sbjct: 404 -SNFS--------LSQVQAQAILDMRLQRLTNMEREKLMQEYRELLQQIEFLKSILENID 454 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L G IK+EL +K TPRRT+I+E D +E D I D+VVT+S GY+KR L Sbjct: 455 ILKGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLE 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q+RGGKG +G + D+DF+T LF S H + FS+ G Y K + +P GS AR Sbjct: 515 YYHQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + N+L L+ E I T + + + Y +F TK G V++ + F + G I Sbjct: 575 GVHIKNLLPLDNEEYIATAL---SERNFHQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLI 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ E+++++TT G +RF +R GRN+ GV+GISL +GD+ Sbjct: 632 AVNLKPGDELIGVKVVKDESEVIITTHDGLAIRFACRELRAM-GRNAAGVKGISLRQGDE 690 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S A+ L G+ E Sbjct: 691 VVSGAV-----------------------LDPGEARE----------------------- 704 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + T+SEKGFGK+TS +++ R GKG+ V+ ++ G +V+ PV+D +++I Sbjct: 705 -----LFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT--SKTGKVVSSMPVSDQEELI 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + + +IR+ ++IR R+T+GV + D++V+ + I Sbjct: 758 IFTSANKIIRLGTSDIRSVGRSTQGVKMVDLENDQKVICADLI 800 >gi|256830857|ref|YP_003159585.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028] gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028] Length = 848 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/883 (41%), Positives = 539/883 (61%), Gaps = 84/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++++SI E+Q SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++G +N+ Y K A Sbjct: 1 MSNISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSA 60 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GK+HPHG++A+YDAL RMAQ++++R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 61 RVVGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRM 120 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A L D+ KDTV+FRPNYD S QEP VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 121 SKLAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 180 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVDG + ++D+P + +D LM+ I+ PDFPTGA+I G+ GI+ AY TGRGS+ IR Sbjct: 181 GEVVDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIYGKAGIREAYRTGRGSVRIRSRIE 240 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK GD E IVV EIPY +NK+ ++EKIA LV E++I I+DLRDESD +G R+V++LK Sbjct: 241 IEKRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLK 300 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G +DVI+NQL+++TSL++ F +NM+A+ +P+ + +L+ F+ +R EVV+RR+++ Sbjct: 301 KGVFSDVIVNQLFKFTSLETSFGINMMAVVNNRPQLLNVKQVLEYFLDYRREVVIRRSRF 360 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ +DEVV +IR S P+ A+ L +R Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFG------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q +AIL++RL RLT L R+ + E L +I+ ++ + Sbjct: 408 -------------LSEIQAQAILDMRLQRLTNLEREKLLEEYAELLKQIEYLTSVIENTE 454 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554 L +I+QEL ++D TPR++ I+ D D ED I E +V+T+S GY+KR L Sbjct: 455 VLKSVIRQELQDLRDNFATPRKSEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLD 514 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR QRRGG G +GV + +EDF+T + S H + FS+ G +Y+ KV ++P G AR Sbjct: 515 NYRQQRRGGTGITGVQVAEEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTAR 574 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK + N+L L+ E I M + + + F TK G V+R+ + + I G I Sbjct: 575 GKHVANLLPLDSNEYIAAAMTCRDLDQEK---FYFFYTKLGVVKRSSVHLYRNIRAVGLI 631 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ + DE++ V ++++L T G +RF S +R GR + GV+G++L KGDQ Sbjct: 632 ALGMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAM-GRTATGVKGLALRKGDQ 690 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++ +V++ D Sbjct: 691 VVA-GVVVNKDT------------------------------------------------ 701 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +Q +LT++E G+GKRT FR +R GKGI ++ + G +V V D++I Sbjct: 702 --QQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITP--KTGKVVGAMMVYPTDELI 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L++ +IR+ +++I + RAT+GV + ++ VV + + Sbjct: 758 LLTSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVVCFDHV 800 >gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] Length = 809 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 539/887 (60%), Gaps = 100/887 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K ARI Sbjct: 9 INIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DP AA RYTE RL + Sbjct: 69 GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 129 AEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ +HI + Sbjct: 189 CQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +R+ I VTEIPYQVNKA ++ KIAELV+++++V I+DLRDESDRQG RVVIELKR A Sbjct: 249 VD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIELKRDA 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR+++ L Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 A+DRAH+L GL A+ +D ++ IIR S N +TAR+ LM Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLM-------------------- 407 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 S +Q +AIL+L+L RL L R I +E L I D+LS ++ Sbjct: 408 ------AEFDFSAIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++K++ ++ PR T I +G+++ +ED + D++VT+S G++KRVP +V+R Sbjct: 462 ALVKEDAKDLRGSYGQPRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFR 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616 Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P + + A+G Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGT 581 Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 A++N++ + Q ERIT I+ FP D +++ AT G +++ L +F + SG Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAM L + DE+++ T+E DILL T+LGQ +RFP+S +R + R S GV+ I L+KGD Sbjct: 636 IAMDLATSDELVAAVETTEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSKGD 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM D + EG + Sbjct: 695 EVVSM---------------------------------------DVAQEGTL-------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++TV+E G GK T+ ++ +R+G G+ + +++ G +VA V++ DQ+ Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSETDQM 759 Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894 +L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + F+L + KG K+TS +F SG + A D++ +E LVA + I+L Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLA 661 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G IR PV+E+R + RA+ GV +K + VVS++ +E +V Sbjct: 662 TRLGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQEGTLV 708 >gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 806 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/885 (41%), Positives = 543/885 (61%), Gaps = 89/885 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 +KG+ V + ++M+ SYL Y+++VI+ RA+PD++DGLKPVHRRI++GM +G++ N Y Sbjct: 6 DKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGPYR 65 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMGK+HPHG+++IYDA R+AQ+++ R L++GQGNFG++DGD AA RYTE Sbjct: 66 KSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRYTE 125 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K +L D+ KDTVDF+PN+D EPVVL +R+PN+LVNG GIAVGMATN+P Sbjct: 126 LRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNMPP 185 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV++G ++ IDN +I +D LM I+GPDFPTGA I+GR GIK AY TGRG I +R Sbjct: 186 HNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQVRA 245 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 V+ IE+ R +IVV EIPYQVNK+ ++ KIAELV+ K I I+ +RDES R+G R+ I Sbjct: 246 VAEIEEEKNKR-RIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIRIAI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +LKR A+ +V+LN+LY+ T +Q+ F + N+ +NG P+ L ++ +V + VV R Sbjct: 305 DLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGV-PKILNLKELISYYVDHQINVVTR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTK+ L KA+ RAH++ GL IA+ N+D ++ I+R S N + A+ + + Sbjct: 364 RTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFG--------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q +AIL++R+ RLTGL R+ + E L I E +IL Sbjct: 415 -----------------LTEIQGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + +L+ IIK EL+ ++D+ RRT I +++ ED I ED+V+T++ GY+KR+ Sbjct: 458 ENHEKLMSIIKDELIEIRDKFGDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P Y+ Q+RGG+G S + R+EDFV DLFI STH +LFF++LG Y K + +P S Sbjct: 518 PEGTYKPQKRGGRGISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSR 577 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 Q++G A+INIL+L+ E++ +I+P E + NL +V ATK G ++R + I +S Sbjct: 578 QSKGTAIINILNLSANEKVQSIIPVREYDP---NLNIVMATKDGIIKRISFEEIKNIRKS 634 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G AM L D I+ T E++++L TK G +RF +R GR S+GV+ I L K Sbjct: 635 GINAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVR-LTGRTSMGVKAIELNK 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ +V S D Sbjct: 694 DDEVVGFDVV------------------------SAD----------------------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +++L +S+ GFGK T ++RI +R+GKGI V ++ G LV+ ++ ND Sbjct: 707 ------KYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKVK--DKTGDLVSAKIIDKND 758 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +I++++ +G +IR+ I + R+T GV + + KD VV+V + Sbjct: 759 EIMMITSEGIIIRIETEGISVMGRSTSGVKLMNI-KDSEVVAVAK 802 >gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5] Length = 850 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/903 (40%), Positives = 554/903 (61%), Gaps = 96/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF+PN+D + +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E ++ V +IDN + ++ L+EI++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 RETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D S R+G R+ Sbjct: 249 RAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL----NGYKPERFTLIGILKAFVAFRE 366 I+L++ A+A+VILN LY++T LQ F V M++L +P+ L +L+ ++ +E Sbjct: 309 CIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLEYYLEHQE 368 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RRT+Y LNKA++RAH+L GL A+ N+DEV+RIIR S N + A++EL+ R Sbjct: 369 NVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELIDR------ 422 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L++VQ +AI+++RL LTGL R+ + E L +I++ Sbjct: 423 --------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRK 462 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 IL+ R LL +I++E+L++ ++ R+T I + D+ ED I RE+ V+ ++ LG Sbjct: 463 FQAILADRKLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTVIAMTKLG 522 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+ + +R+Q RGG+G G+ ++D++ +L + +TH ++FF++ G VY+ KV+ + Sbjct: 523 YIKRMTVDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEI 582 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P ARG A+IN+L L GE+IT ++P + E Y++ ATK G V++ + D+ Sbjct: 583 PEAGRTARGTAIINLLQLAPGEKITAVIPLRKYEEGH---YLMMATKKGLVKKTPIKDYE 639 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ L DE++ V+ DI+L T+ GQC+RF + +R GR S+GVRG Sbjct: 640 NVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVR-STGRASMGVRG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ++L GD+V++M L+ DY Sbjct: 699 MNLTDGDEVVAMQ--LNTQGDY-------------------------------------- 718 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L VSE G GKRT+ +F + NR GKG++ +++ + G +V Sbjct: 719 -------------LLVVSENGMGKRTAMSEFVVQNRGGKGVKCYKITE--KTGNVVGAKA 763 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 VN+ ++I++++ +G +IR+ +I + R T GV + + + V S+ ++R+ + EA Sbjct: 764 VNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVTVASIAKVRDKD--PEA 821 Query: 907 EST 909 ++T Sbjct: 822 DTT 824 >gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415] gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415] Length = 829 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/883 (41%), Positives = 551/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+D P+ +ME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+VR Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ +LDEV+ IIR S A+ +LM R Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I+NE N L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK E+ +K + PRRT ++ G +L +EDED I E++++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV DL STH VLFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E +L+ F T+ G V+R +S+F I + Sbjct: 576 RTAKGLPVVNLLKLTDGETIQTIISLNQNEIDEKSLF--FTTRQGLVKRTSISEFTNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V T +++I++ T G VRF +R GR + GV+GI+L Sbjct: 634 NGLRALNLKDGDELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNM-GRGATGVKGITLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 DQV+ +++ ++D V Sbjct: 693 DADQVVGASVI----------------------------------RDDQEV--------- 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L ++EKG+GKRT + ++ R GKGI+ +++ N G+L + V+ + Sbjct: 710 ----------LVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GSLAGLVTVDGH 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++D G +IR V+ I R+T GV + ++ ++V+ Sbjct: 758 EDIMIMTDTGVIIRTGVSNISQTGRSTMGVKVMRLDENAKIVT 800 >gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] Length = 870 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/900 (40%), Positives = 540/900 (60%), Gaps = 101/900 (11%) Query: 8 SDEEEEKG---------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 +DEEE G + + +M+ S++ Y+++VI+ RA+PD+RDGLKPVHRRIL+ Sbjct: 27 ADEEETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILY 86 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M + G+ N+ + K AR G+V+GKYHPHG+ A+YD + RMAQ +S+ + L++G GNFG Sbjct: 87 AMNESGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFG 146 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA RYTE RL + A LL DL K+TVD++PNYD S +EP VL AR+PN+LVNG Sbjct: 147 SIDGDSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNG 206 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP HNL EV+D VIDNPD+ LD L++++ GPDFPTGA I+GR GI+ Sbjct: 207 SQGIAVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIR 266 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGS+ +R I +T R I V EIPY VN+ +LEKI EL+R+K++ +I++ Sbjct: 267 EAYETGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISN 326 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 + D +DR G ++IELK+ A V+LN+LY++T +Q+ F NM+AL P +L IL Sbjct: 327 VHDGADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQIL 386 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 ++A + +V+ RRT+Y L KA +RAH++ GL IA+ N+DEV+ IIR S + AR L+ Sbjct: 387 SYYIAHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLI 446 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + ++N L E+Q AILE+RL RLTGL D + EL Sbjct: 447 E-NFN-------------------------LDEIQANAILEMRLRRLTGLEYDKLVEELR 480 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537 L I +L + + IIK+E+ +K + + RRT+I D++ ED I ED Sbjct: 481 DLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDIDVEDLIADED 540 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MVVTV+ GYVKR+PL+ YR Q+RGGKG GV ++++DFV LF+ STH +LFFSS G Sbjct: 541 MVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGK 600 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKH 654 VY+ KV+ LP ARG A++N+LSL +GE I ++ FP++E Y++FAT Sbjct: 601 VYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDFPKEE------YLMFATSA 654 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G V++ +S + + R G IA+ L+ DE++SV+ + + + + G+ + + S R Sbjct: 655 GMVKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEAR 714 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR++ GVRG+ + DE + M Q L Sbjct: 715 AM-GRDTKGVRGMKVPA-----------------DEHVLEMSIAKPQADL---------- 746 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 F++T EKG+GKRTS Y++ + +R G+G+ +++ Sbjct: 747 ------------------------FVIT--EKGYGKRTSVYEYPLHHRGGQGVYTITMTR 780 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G L A V D++++I+++++G ++R PV + R+T+GV I + ++V +V Sbjct: 781 --KKGELAAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRAV 838 >gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] Length = 847 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/897 (40%), Positives = 546/897 (60%), Gaps = 85/897 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 9 ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 129 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R Sbjct: 189 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++I+V EIPY VNKA ++ +IA+L R K I I D+ DE+DR G R+VI+++ Sbjct: 249 IEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E+VV RRT++ Sbjct: 309 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 369 DLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G LS+ Q +AIL++RL RLTGL R+ I E L I + DIL+ R Sbjct: 412 ---------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKDILAHRE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++ + RRT + G + ++EDED I +D++VT++H GY+KR+P+ Sbjct: 463 RINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVD 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + ++DF+ L STH +LFF++ G VY K + +P A+ Sbjct: 523 EFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRAAQ 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L+++ E+I+ ++ E++ ++ ++ F TK G V+R + +F I +G Sbjct: 583 GIPIINLLNIDSKEKISAVINVSH-ETNDDDKFLFFTTKDGTVKRTPVPEFKNIRSNGLK 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ + +++ T+ G + F + +R GR + GVRGI L D Sbjct: 642 AINLHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDNDS 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A LH D + Sbjct: 701 VIGAA-PLHQDDN----------------------------------------------- 712 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L +SE GFGK+T + ++ I R G G++ +V+K N G LV + V ++ I+ Sbjct: 713 -----VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDEDIM 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910 LV+D+G +IR + + R+ GV + +V ++ ++ +E + D+A+ TE Sbjct: 766 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDSDDDAQGTE 822 >gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] Length = 840 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/878 (40%), Positives = 531/878 (60%), Gaps = 83/878 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+ K Y K A Sbjct: 8 IIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++Y A+ RMAQ+WSLR L++GQGNFGSVDGD PAA RYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ KDTVD N+DGS +EP VL R P +LVNG GIAVGMATN+P HN+ Sbjct: 128 AKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPHNI 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 + +D A IDN DID++ L++II+ PDFPTG I G +G++ +Y TGRG +VIR + Sbjct: 188 KDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIYGYSGVRESYLTGRGRVVIRPKTS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+++V EIPY VNKA ++ +IA+L+ EK+I I+++ DESDR+G R+VI++K Sbjct: 248 VEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVIDIK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ++V+LN L ++T+LQS F VN VAL +P L I++ FV R +VVVRRT++ Sbjct: 308 KDAISNVVLNTLLKHTALQSSFGVNNVALVHGRPRLLNLKDIIRYFVEHRHDVVVRRTQF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA ++DEV+R+IR S P+ A+ LM Sbjct: 368 ELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMD---------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L++ Q AI+ +RL +LTGL +D +R E + I D+L+ Sbjct: 412 ----------AFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLNDVLAHVE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK ELL+VK + RRT IV + ED E+MV+T+SH+GY+KR PLS Sbjct: 462 LRMEIIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIKRTPLSE 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGG G G RDEDF+ + + + H ++LFF+ G + KV+ +P G+ Q++G Sbjct: 522 YKVQNRGGVGSKGSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEGTKQSKG 581 Query: 616 KALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ +++ + + D N+ Y+V TK G +++ L + + ++G Sbjct: 582 RAIQNLLNIEPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSRPRQNGV 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ + D++L + ENDI++ K G+ +RFP S +R GR + GVRGI + D Sbjct: 642 NAITIKEGDQLLEAKLTNGENDIMIAVKSGKAIRFPESKVRPM-GRTASGVRGIWMDDDD 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + I M V +A+ Sbjct: 701 EAIGMVCVEPNNAN---------------------------------------------- 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 IL VSE GFGKR++ D+RI+NR GKG++ ++++ + G L+A+ V D D + Sbjct: 715 ------ILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTE--KTGNLIALIDVTDEDNL 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 ++++ G IR+ V+ +R+ R T+GV + + ++ + Sbjct: 767 MIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNEDSI 804 >gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] Length = 863 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/888 (40%), Positives = 543/888 (61%), Gaps = 88/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM +G N+ Y KCA Sbjct: 12 IMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++++Y AL RM Q+W++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DD+ KDTVD N+D + EP V+ + PN+LVNGG GIAVGMATNIPTHNL Sbjct: 132 AKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAVGMATNIPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNP+I + LM+ I PDFPTGA I G G+K+AY TGRG +V+R + Sbjct: 192 SEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAE 251 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE +GD ++IVVTEIPY VNKA ++E IA+LV+E R+ I+++ DE+ RQG R+V+++ Sbjct: 252 IE--AGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDETGRQGMRIVVDV 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+A+VILN+L++ T+LQS FSVN +AL +P L +K FV R +V +RRT+ Sbjct: 310 KRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLNLRECIKYFVEHRHDVTIRRTQ 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA++RAH+L GL IA N+DEVV IIR S P A+ L +R Sbjct: 370 FDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKR-------------- 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E+Q++AI+++RLA+LTGL D + E L IK +IL + Sbjct: 416 ------------FELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNP 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R ++K+EL VK++ RRT I+ + ED + +V+T+SHLGY+KR PL+ Sbjct: 464 ERCKEVMKEELNEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLT 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGG G G R++DF ++ + H ++LFF+ G Y K + +P G ++ Sbjct: 524 DFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSK 583 Query: 615 GKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+A+ N+LSL G+ + + ++E + YVVF TK G V++ L + + +G Sbjct: 584 GRAIQNMLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRPRTNG 643 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ ++ DE++ V +++++ + G+ RF +R GR S GVRG+ L Sbjct: 644 VIAININESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTM-GRVSTGVRGMKLDDD 702 Query: 733 --DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M +V ND+ Sbjct: 703 CEDEVIGMVVV-----------------------------------NDA----------- 716 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + ++ VSE+G+GKR+ D+R++NR GKG++ ++++ + G LVA+ V D+ Sbjct: 717 -----ENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITE--KTGKLVAIKTVTDD 769 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERI 897 + +++++ G +IR+ V + R+ RAT+GV +I + K++ + SV ++ Sbjct: 770 NDLMIINKSGIVIRMAVAKCRVMGRATQGVRLINLSKKNDTIASVCKV 817 >gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A] gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A] Length = 867 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/899 (41%), Positives = 542/899 (60%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM + + N + K A Sbjct: 12 IKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENNMYANTAHKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++G GNFGSVDGD AA RYTE RL Sbjct: 72 RIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+TV+F NYDGS +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 132 SKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D A +DNPDI + LM+ I+GPDFPTG ILG TG++ AY TG+G I +R Sbjct: 192 GEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQILGITGLRQAYETGKGIIAVRAQHE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I +T +R ++++TEIPYQVNK ++E+IAE+V+ K I I+DLRDES+R+G R+VIEL+ Sbjct: 252 IVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDESNRKGMRIVIELR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + V LN LY++T LQ+ F +NM+AL +P +L L ++A + E++ RRT++ Sbjct: 311 KDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTHYIAHQIEIITRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H+L L A+ ++D V++II+ + NPE AR L+ Sbjct: 371 DLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLI----------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T +E+Q R+IL ++L RLTGL D I E ++L +I E IL Sbjct: 414 ---------ATYDFTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDED 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + IIK EL +KD+ D PR + + + LD+++ED I ED+VVTV++ GY+KR+ L Sbjct: 465 LKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDIVVTVTNNGYIKRMNLD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G SGV + D+DFV + + STH LFF++LG V+K K + LP GS Q++ Sbjct: 525 EYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSK 584 Query: 615 GKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G ++N L+ GE++ TTI F ++ Y+ F TK G V+R ++++ I ++ Sbjct: 585 GVPIVNYLNFQPGEKLASFTTIKDFDAEDH-----YLFFVTKRGIVKRTHINNYKNIRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L ++ ILL G+ + F + IR GR + GVRG+ + Sbjct: 640 GIIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREI-GRTATGVRGMDIPD 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++++ A+V +E +I Sbjct: 699 DEEIVGFAVV-------------------------------------DGIEDDI------ 715 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L ++E G+GKRTS ++R+ NR GKG++ +V+ N G L + V +++ Sbjct: 716 ---------LVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKN--GKLKTLRKVTNDE 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 II+VSD+G IR+P+++I RAT+GV I + D++V ++ + E +E S E Sbjct: 765 DIIVVSDRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDHQEPEEEVVSNE 823 >gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 831 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 551/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +E RI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + ND Sbjct: 693 EEDWVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ N Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++ KG +IR V+ I R+T GV + D ++V+ Sbjct: 758 EDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800 >gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] Length = 923 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/723 (46%), Positives = 481/723 (66%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D+P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I+D Sbjct: 241 YKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V++ D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LIR V +IR RA GV + + + E +VS+ Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686 +++ F PE E S +L V+ AT +G +R ++D+ + N+ G+ IA+ R+ ++++ Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 ++ +D++L T G +R + IR GR + GVR I+L +G+ ++S+ Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890 Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V +VS ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 + + KV ++ R A + +++L++GE + ++ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890 >gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/903 (41%), Positives = 560/903 (62%), Gaps = 88/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY A+ MAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV+ R Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ NKA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGVVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D++++V ++DI++ T+ G VRF ++IR GR++ GVRG+SL Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + ND Sbjct: 693 EDDRVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRT + ++ R GKGI+ +++ N G L + V+ Sbjct: 706 ------HQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAE 907 + I+++++KG +IR V I RAT GV + D ++V+ ++ E E + E E Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKVMKLDADAKIVTFALVQADDEEETIGEVE 817 Query: 908 STE 910 ++ Sbjct: 818 QSQ 820 >gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12] gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12] Length = 826 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/899 (41%), Positives = 559/899 (62%), Gaps = 94/899 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FILSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F + N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634 Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 RS I A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV GI Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ + ISGD GN Sbjct: 694 KLNENDFVVGAVV------------------------ISGD--------------GN--- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+VSE G GK+T + +R +R GKG+ +++ + G LV + V Sbjct: 713 -----------KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGIISV 759 Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVD 904 +D N +++++ +IRV + +IR R T GV + +TA K V S + ESEI++ Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRKTSGVKLINTADKVMYVNSCPKEEESEILE 818 >gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] Length = 842 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/867 (42%), Positives = 532/867 (61%), Gaps = 45/867 (5%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRLQ + LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG VA+I NP+I Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268 LM+ + GPDFPTGA ILG + IK AY TGRGSI +RG++ IE + +RE I++ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR G R+VIELKR + V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQ+ F NM+AL +P+ TL L F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+A+LD ++ +IR +P+ TA+ EL+ +SY Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELI------------------NSYG-------- 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSEVQ AIL+++L RLT L D IR E L ++I + DIL R R+L II+ E + Sbjct: 395 LSEVQADAILQIQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K + TPRRT I +++D D I E +++ ++ GY+KR+P+S + AQ R +G++G Sbjct: 455 KTQFATPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAG 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 ++D+D + H SVLFFS G VY K +++P GS +RG ++ +L + + E Sbjct: 515 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+I+ E S Y+V TK GN+++ L F I +G IA+ L+ D++ V Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ +++ ++ G + F ++ GR + GV+ + L GD++I M I+ A + Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDILPAAILN 691 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 M+ + +S + EE ++++ + NI ++L ++ G Sbjct: 692 TLNTDTEMEEEPTEVEELSDNIEETSNIEIATGEPANILGP----------WVLIITIGG 741 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKR FR+ NR+G+G+ AT L + VN +++I++ +++G +IR + Sbjct: 742 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 801 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894 N I I SR GV + +D+ + V Sbjct: 802 NAISIQSRTATGVRVQKLDEDDAITGV 828 >gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922] gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922] Length = 864 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/892 (41%), Positives = 543/892 (60%), Gaps = 88/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N+ Y Sbjct: 5 EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GK+HPHG+ ++YD + RMAQ WSLR LL++GQGNFGSVDGD PAA RYT Sbjct: 65 KKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RLQK + LL D+ K+TVDF+ N+D + EP VL R P +LVNG GIAVGMATN+ Sbjct: 125 EARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMA 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+DG VA IDN DI +D L + I PDFPTG +I G G+K A+ TGRG +V+R Sbjct: 185 PHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIYGYDGVKQAFETGRGRVVMR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 ++ E+ G R+ I+VTEIPYQVNKA M+ K A+L+++ ++ IA++RDESDRQG R+V Sbjct: 245 AKANFEEVHG-RDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK A +V+LNQLY++T LQS FS+N +AL +PE+ L +++ FV R EVVVR Sbjct: 304 YVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNGRPEQLNLKDMIRHFVDHRHEVVVR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT++ L KA++RAH+L G + +LD ++IIR S PE AR LM A D Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLM----TAFD-- 417 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q RAILELRL LTGL D IR E + I+ Sbjct: 418 --------------------LSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLK 457 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +ILS IIK+EL +K + RR+ I D+ ED I +++V+T+SHLGY+ Sbjct: 458 NILSDEDLRFSIIKEELEEIKRKYADERRSEIDYSGGDLNIEDLIPDDNVVLTISHLGYI 517 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL+ Y+ Q RGG G RDEDF+ + + + H +LFF+ G + +V+ +P Sbjct: 518 KRTPLTEYKKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPE 577 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS ++G+A+ N++++ +++ + + DE NN YV+ TK+G +++ L + Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G A+ + D +L ++ I++ TK G+ +RF +R GR + GVRG Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPM-GRTASGVRG 696 Query: 727 ISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 I+L K ++VI M +V + ++N++ Sbjct: 697 INLGDDKDNEVIGMIVV-------------------------------SDMENET----- 720 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L VSEKG+GKRTS D+R +NR GKG+ ++++ + G L+A+ Sbjct: 721 ---------------VLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITE--KTGKLIAI 763 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V D++ +++++ G IR ++EIR+ RAT+GV + + K++ + ++ + Sbjct: 764 ESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIAK 815 >gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] Length = 873 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/904 (41%), Positives = 552/904 (61%), Gaps = 75/904 (8%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D + + V +++EM++ ++ YA++VI+ RA+PD+RDGLKP RRILF M ++G+ N Sbjct: 17 DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 +K++KCA+I GE MG +HPHG+ AIY L MAQ W++R +LI+GQGNFGS++GDPPAA Sbjct: 77 RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL A L+ D+ KDTVDF PNYD + EP V A +PN++VNG GIAVGMAT Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E +DG VA+ID+P + + L+E I+GPDFPTG VILGR GI N + TGRGS+ Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSL 256 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG H+E+ G + IV+ EIPY VN+A+++EKI ELV +K I +IAD+RDESD + Sbjct: 257 KVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESD-ENT 315 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A V+ N LYR+T LQ+ F+VNMVA++ +P+ L +L ++ R EV Sbjct: 316 RVVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEV 375 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ LNKA +RA VL G IA++ L E + IIR S N + ARR+L+ R ++ I+ Sbjct: 376 VTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIE 435 Query: 429 DLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L +D T +G MY LS Q AIL+LRL +LTGL R+ I E L +IK+ Sbjct: 436 SLGIPLDGQRMT---EGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQF 492 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+S ++ I+K ELL +K++ PR+T+I+ ++ ED + + +V+T++H G+ Sbjct: 493 RLILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGF 552 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRD------EDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +KR L YR+QRRGG+G G+ +D +DFV LF STH +LFF++ G VY + Sbjct: 553 IKRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQ 612 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-------ESSWNNL-YVVFATK 653 +V+ +P ++GK + +IL L E I +++ + ESSW+ Y+ F T Sbjct: 613 RVYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEGYIFFCTL 672 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ +S+F I + G A+ ++ D+++ + +I+L TK GQ +RF S + Sbjct: 673 KGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDV 732 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GRN+ GV GI L GD+V+ M+IV D+ + + +R Sbjct: 733 RPM-GRNAAGVIGIDLQPGDEVVGMSIV-----DHRATLLVVSEKGMGKR---------- 776 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 S E ++ K Q ++T+ + S+++GK ++A V Sbjct: 777 -----------TSFEEYRKQKRGGQGVITM--------------KTSDKTGKVVKAITVL 811 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 D+D++++++ KG +IR+ V ++R R T+GV + +++V S Sbjct: 812 ---------------DDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTS 856 Query: 894 VERI 897 + RI Sbjct: 857 IARI 860 Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 19/221 (8%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +E + + G VK+ P+S +R R+GG + + + + D + D ++ + Sbjct: 663 KEGYIFFCTLKGKVKKTPVSEFRNIRKGGI--TAISIEENDKLIDCLFTDGQKEIVLITK 720 Query: 595 LG--FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G + E R P R A + + L G+ + M + ++ ++ + Sbjct: 721 EGQSIRFSESDVR-----PMGRNAAGVIGIDLQPGDEVVG-MSIVDHRAT-----LLVVS 769 Query: 653 KHGNVRRNKLSDFIQINRSGK--IAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R ++ + R G+ I MK D +++ T ++++L+ T G +R Sbjct: 770 EKGMGKRTSFEEYRKQKRGGQGVITMKTSDKTGKVVKAITVLDDDELLVLTLKGNVIRIH 829 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 + +R GRN+ GVR + L D+V S+A ++ D +E Sbjct: 830 VKDLRK-TGRNTQGVRLVQLDSEDKVTSIARIIPDKEDNEE 869 >gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] Length = 831 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 552/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +EKRI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + ND Sbjct: 693 EEDWVVGASRI-----------------------------------ND------------ 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 706 ------KQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++ KG +IR V+ I R+T GV + D ++V+ Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800 >gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] Length = 831 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/883 (42%), Positives = 552/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V++NPD LME++ GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY +NK + E I L +EKRI I +RDES RQG R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G P+ +L I+ ++ +++V+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +R+Q+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN+L L+ GE I TI+ +++ + Y F TK G V+R ++S+F I + Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+ G VRF + IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ + + ND+ Sbjct: 693 EEDWVVGASRI-----------------------------------NDN----------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L ++E G+GKRTS+ ++ R GKGI+ +++ N G L + V+ + Sbjct: 707 -------QEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I++++ KG +IR V+ I R+T GV + D ++V+ Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVT 800 >gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] Length = 820 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/863 (41%), Positives = 533/863 (61%), Gaps = 83/863 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF ++G + + KCARI Sbjct: 8 ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL RMAQD+S+R L EGQGNFGS+DGD PAA RYTE R+ + Sbjct: 68 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TVDFRPNYD S +EP+VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + + +ID+PD+ +D L+ II GPDFPTG I G+ +AY GRG++ +RG IE+ Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + IV+ EIP+ +NK++++EKIA LV E++I IADLRDESDR+G RVVIELK+G Sbjct: 248 RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKGV 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++I+N LY++T L++ F +NM+A+ +P+ T+ L F+ R EV+VRRT++ LN Sbjct: 308 IPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFELN 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA R H+L+GL A+ ++DEVV +IR S P A+ L++R Sbjct: 368 KAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER------------------ 409 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q ++IL++RL RLTGL R+ + E++ L +I IL L Sbjct: 410 --------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILW 461 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 G+I+ E+ +K+ TPRRT ++ E L ++E ED I +D+V+T+S GY+KR L++Y+ Sbjct: 462 GVIRDEVTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQ 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKG +G+ ++DFV + + H +L F++ G +++ KV ++P GS A+G Sbjct: 522 QQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTH 581 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + NI+ L + E +TTI+ E +N + +FAT+ G V+R+ S + + R+G +A+ Sbjct: 582 IANIVPLEKEEWVTTILTVRE---FSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVG 638 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L DE++ V+ T + I+L T G +RF +R GR + GV+GI+L GD V++ Sbjct: 639 LREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNM-GRGAAGVKGIALRPGDSVVA 697 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 I+ K D+ Sbjct: 698 CLILQE--------------------------------KQDTPA---------------- 709 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 I+TVS G+GKRTS +R+ R GKGI V++ + G ++ PV+D++ ++L++ Sbjct: 710 --IMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQ--KTGLVIGAKPVSDDNALVLLT 765 Query: 858 DKGTLIRVPVNEIRIASRATKGV 880 +IR+ V+E+R A RAT GV Sbjct: 766 STNKIIRMSVDEVRSAGRATMGV 788 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 8/139 (5%) Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 ++G E T+ + + ++ ++L + ++T+S +G+ KRT+ ++ R G Sbjct: 468 VTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGG 527 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 KG+ S+ + V F N Q ++L ++KG + ++ V+++ SR KG I Sbjct: 528 KGVAGLHTSEDD----FVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIA 583 Query: 884 STA---KDERVVSVERIRE 899 + K+E V ++ +RE Sbjct: 584 NIVPLEKEEWVTTILTVRE 602 >gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] Length = 857 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/889 (42%), Positives = 540/889 (60%), Gaps = 81/889 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K Y Sbjct: 21 EQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKPYR 80 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCA G V+G+YHPHG+A++YDA+ R+AQD+S+R L++G GNFGSVDGDPPAA RYTE Sbjct: 81 KCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRYTE 140 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K + +L D+ K+TVDF NYD QEP VL +R+PN+L NG GIAVGMATNIP Sbjct: 141 SRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNIPP 200 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D +IDNPD LD +M+ I+GPDFPTG VI+GR GI+ AYATGR + +R Sbjct: 201 HNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIMGRAGIRAAYATGRARLTLRA 260 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE+ + RE+IVVTEIPY VNKA ++E IA+LV++KRI I+DLRDESDR G R+VI Sbjct: 261 RTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMRIVI 320 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A+A V+LN+LY Y+ LQ V M+AL G P+ L +L ++ F+ E+V RR Sbjct: 321 ELKRDANAQVVLNRLYSYSQLQDTVGVIMLALVGGVPKVMPLKDVLTHYIDFQGEIVTRR 380 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L +A++R H+L GL + N DEV+ IIR S + ++ L+ R Sbjct: 381 TKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIAR------------ 428 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 ++++Q AI+ ++L +L+GL R I EL + +KE IL Sbjct: 429 --------------FGITDIQATAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILG 474 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +R++ I+K+EL ++ + RRT IV +++ ED I ED V+T++H GY+KR P Sbjct: 475 DYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVDIEDLIPVEDCVITLTHFGYLKRQP 534 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + YR QRRGG+G SG+ R+EDFV +LFI STH ++FF+S G ++ K + + GS Sbjct: 535 VDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRT 594 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +RG ++N+LS++ E++T ++ DE + +V T+ G ++R L + + R G Sbjct: 595 SRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMG 654 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD DE+ V +++++ TK G +RF R + R + GV+ I+L G Sbjct: 655 LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIRFDEQDARPLS-RTARGVKAITLEDG 713 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ MA V R SG T Sbjct: 714 DEVVGMARV---------------------RKESGAT----------------------- 729 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +LTVSE G G+RT +R+ +R GKGIR V K G + V V+++D Sbjct: 730 -------LLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYVDK---NGPVAGVRMVDEDDD 779 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +I+++D G +IR+PV EI + SR GV +++ RVV++ R + E Sbjct: 780 VIIITDDGVIIRIPVREITVQSRYGGGVRAMRVSEESRVVTLARAPKEE 828 >gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680] Length = 811 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/894 (41%), Positives = 541/894 (60%), Gaps = 101/894 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + G+ K + K A Sbjct: 8 VLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPHRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G+YHPHG+AA+YDA+ RMAQD+S+R L++G GNFGSVDGD PAA RYTE RL Sbjct: 68 NLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ KDTVDFRPNYD + QEPVVL AR PN+L+NG GIAVGMAT+IP HNL Sbjct: 128 TALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+G + +++NP+ +D LM I+GPDFPT +I+G G++ AY TGRGS+ +RG Sbjct: 188 TEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVTVRGRCE 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G R IVVTEIPY VNKA ++E+IAELV+EK+I I DLRDESDR+G R+V++++ Sbjct: 248 IEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRIVMDIR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R S VILN+LYR T LQ F + ++AL +P+ L +L ++ R EV+ RRT++ Sbjct: 308 RDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVIRRRTEF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L ARDR H++ GL IA+ NLDEVV IIR SP+ +TAR LM R Sbjct: 368 DLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSR--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+Q AI+E+RL +LTGL R+ + E L I + DIL Sbjct: 413 -----------FDLTEMQAEAIVEMRLRQLTGLERNKLEEEYRELVGRISDLEDILRRPE 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ IIK++L+ +K RRT I E E ED I E +VVT+S+ GY+KR PLS Sbjct: 462 RVQAIIKEDLIDIKTRFGDKRRTEIREEDASFEAEDLIEEESIVVTLSNRGYIKRQPLST 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG +G +R EDF TD+F+ +T +++LFF++ G VY K +++P S Q+RG Sbjct: 522 YRSQRRGGKGVTGTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEASRQSRG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +IN L LN GE++ T++ ++ ++V AT+ G V++ + +F QI RSG IA Sbjct: 582 TPVINFLRLNPGEKVNTVISVNRFDAGQ---HLVMATRTGMVKKVPIDEFRQIRRSGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L ++DE++ V+ + + ++L T G + F +RV GR + GVRGISL +GD+V Sbjct: 639 INLRNQDELVGVQKIYKGDRLVLVTGRGYSIVFDEGDVRVM-GRGAAGVRGISLEQGDKV 697 Query: 736 ISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 I + ++L + Y +R TSL Sbjct: 698 IDIDKYKEGADMLLVTERGYGKR---------------------TSL------------- 723 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPV 847 QEL+L++ R GKG++ +S K E+ AVFP Sbjct: 724 --QELRLQK------------------------RGGKGLKTIQISEKTGELVGGKAVFP- 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ + ++ G +IR+ V+++ R ++GVV+ ++ +VS+ R + + Sbjct: 757 --KEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIARFKSED 808 >gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] Length = 809 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/894 (41%), Positives = 561/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R+++VVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I++ D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SGK A+ L D ++ V+ + ++I+L + G CV F + +R GR++ GV+G++ Sbjct: 632 GKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT ++++ ++G+ +V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTEKTGR---------------IVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D D+I+L S +G IR+ V++I + R T+GV + D +V S+ RIR E Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809 >gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708] gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708] Length = 869 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/889 (41%), Positives = 534/889 (60%), Gaps = 54/889 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + LL D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 QALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG VA+I N +I LM+ + GPDFPTGA ILG + IK AY TGRGS+ +RGV+ Sbjct: 188 LGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + +RE I++TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR G R+ Sbjct: 248 TIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQS F NM+AL +P+ TL L F+ FR + Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRIATIN 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA +R H+L GL IA+++LD ++ IR + + +A+ EL+ Sbjct: 368 RRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELI------------ 415 Query: 431 IDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T Y LSEVQ AIL+++L RLT L D IR E L ++I + D Sbjct: 416 ---------------TNYGLSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL R R+L II+ E+ +K + TPRRT I D++D D I E +++ ++ GY+K Sbjct: 461 ILDRRERVLEIIETEVTQIKTQFATPRRTIITHAEGDIDDIDLIANEKVLILLTKQGYIK 520 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+P++ + AQ R +G++G ++D+D + H SVLFFS G VY + +++PIG Sbjct: 521 RMPVNTFEAQSRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIG 580 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S +RG ++ +L + + E+IT+I+P E S Y+V TK GN+++ L F I Sbjct: 581 SRTSRGTPIVQMLPIPKEEKITSIVPVDEFTSEE---YLVMLTKGGNIKKTALEAFSNIR 637 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 +G IA+ L+ D++ V E+ I++ ++ G + F + ++ GR + GV+ + Sbjct: 638 ANGLIAISLEEGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMK 697 Query: 729 LAKGDQVISMAIVLHA---DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 L GD+++ M I+ A D + + + T+ +S+ G Sbjct: 698 LKPGDELVGMDILPAAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNSTG-- 755 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++L ++ G+GKR FR+ NR+G+G+ AT L + Sbjct: 756 ------------PWVLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATLR 803 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VN +++I++ +++G +IR VN I + SR+ GV + +D+ + V Sbjct: 804 IVNSDEEIMMATNRGIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGV 852 >gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4] gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4] Length = 802 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/729 (47%), Positives = 490/729 (67%), Gaps = 37/729 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + IT+EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M +G+ ++ + K A Sbjct: 4 VIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ +YHPHG+A +YDAL R+AQD++ R L++G GNFGS+DGD PAA RYTE RL Sbjct: 64 YIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ KDTVDF PNYDG+ QEP VL +R PN+LVNG GIAVGMATNIP HNL Sbjct: 124 SRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +A+IDNPD+ L+ LM + GPDFPTG +ILGR GI+ AYATGRG IV+RG + Sbjct: 184 GEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGKAT 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G+R IV+TEIPYQVNKA +LE+IAELV+EKR+ +ADLRDESDR G RVV+ELK Sbjct: 244 IER-KGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A VILN+LY++T L+ F V M+AL +PE +L +++ ++ ++EVVVRR +Y Sbjct: 303 RDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVRRCQY 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ R V+ GL +AV N+D VV++I+ +P+ TA+ L+ Sbjct: 363 ELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLIS---------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+E Q +AIL++RL RLT L R+ + EL L +I +L+ + Sbjct: 407 ----------TFGLTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEA 456 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++ GI+K+EL ++K+ PRRT IV+ + ED I E +VV +SH GY+KR S+ Sbjct: 457 KVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSL 516 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q RGG+G +G+ ++D DFV L++ +TH +LFF+S G V++ KV+ +P RG Sbjct: 517 YRSQHRGGRGVTGLKLKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRG 576 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 AL N+L L+ E++T I+P F ED+ YV+ T+ G V++ L + I R G Sbjct: 577 TALPNLLQLSPEEQVTAIIPVADFSEDK------YVLLVTRQGVVKKLPLGELANIRRVG 630 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD DE+++ E ++LL T+ G+ +RF + +R GR + GVRG+ L G Sbjct: 631 LNAISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPM-GRAARGVRGMKLRPG 689 Query: 733 DQVISMAIV 741 D+V +A++ Sbjct: 690 DRVAGLAVL 698 Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 13/158 (8%) Query: 747 DYDERICYMKHMSAQRRLISGDT-EEITSLKN---DSSVEGNISEE---RCQELKLKEQF 799 + E+I Y++ + A + G EE+ +LK D + EE R ++L EQ Sbjct: 440 ELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQV 499 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++ +S +G+ KR +R +R G+G+ K+ + + ++ N +D ++ + Sbjct: 500 VVLLSHQGYIKRQDKSLYRSQHRGGRGVTGL---KLKDGDFVRHLYLANTHDYLLFFTSA 556 Query: 860 GTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSV 894 G + R+ V EI A RA +G + + +E+V ++ Sbjct: 557 GRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQVTAI 594 Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV-VMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V+ V+ GY KRV + + Q RGG G + + V + V + +V +L S+ G+ Sbjct: 704 VLLVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTSGPVVGVEVVRDEEEILLASAAGW 763 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639 + + KV +P+ QARG + ++ L +R+ + ED Sbjct: 764 LTRLKVKEVPVMGRQARG---VVLMRLQPEDRLVALAKIGED 802 >gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108] gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108] Length = 809 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/894 (40%), Positives = 562/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++IVVTE+PY VNKA ++EKIAELV EKRI I+D+RDESD++G R Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRTKY L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ + Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISK--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +EVQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+IV+ D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIVQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +R GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT +++++++ G++V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKT---------------GSIVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901 D+D+I++ S +G IR+ V+++ + R T+GV + D +V S+ RI+ E Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809 >gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] Length = 923 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/723 (46%), Positives = 480/723 (66%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V++ D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LIR V +IR RA GV + + + E +VS+ Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPAYGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686 +++ F PE E S +L V+ AT +G +R ++D+ + N+ G+ IA+ R+ ++++ Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 ++ +D++L T G +R + IR GR + GVR I+L +G+ ++S+ Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890 >gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] Length = 809 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/894 (40%), Positives = 566/894 (63%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GI++AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I++TE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++E++ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+QR Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++VQ +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FKFTDVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I++ D E+E+ I ++ VVT++H GY+ Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R++DFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ +++ E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQISKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++++L + G CV F + +RV GR + GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVM-GRLAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEEGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT +++++++GK +V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGK---------------IVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 D D+I++ S +G IR+ ++++ + R T+GV + +D RV S+ RI+ E Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809 >gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7] Length = 830 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/898 (41%), Positives = 555/898 (61%), Gaps = 97/898 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 NELGLTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ +LD ++E I GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT +E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-HKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I+E IL S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIEELNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L VY Q RGGKG+ ++DF+ F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKVYERQNRGGKGKLSGSTYEDDFIESFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P + A GKA++N++SL E+I + + DE S + F TK+G V+ Sbjct: 570 LKVYKIPEANRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717 R LS+F G A+ LD DE++S + + +L+ + G ++FP+ +R Sbjct: 625 RTNLSEFGSNRSCGIRAIVLDEDDELVSAKIVDKNAKHLLIASHSGTFIKFPLENVREM- 683 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GVRGI L + D V+S A+V+ D++ Sbjct: 684 GRSTHGVRGIKLNENDFVVS-AVVISDDSNK----------------------------- 713 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L+VSE G GK+T + +R R GKG+ ++K + Sbjct: 714 ----------------------LLSVSENGLGKQTLAEAYREQARGGKGVIGMKLNK--K 749 Query: 838 IGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LV+V V+D N +++++ +IRV + +IR R GV + TA ++VV V Sbjct: 750 TGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDTA--DKVVYV 805 >gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] Length = 830 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/827 (43%), Positives = 532/827 (64%), Gaps = 52/827 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEM+NSY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M + G+ ++K Y K A Sbjct: 30 IVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGMTYDKAYKKSA 89 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD+L RM Q++SLR LI+GQGNFGS+DGD AA RYTE R+ Sbjct: 90 RVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMRYTESRM 149 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ +L D+ K+TV +RPNYDGS +EP VL AR PN+L+NG GIAVGMATN+ HNL Sbjct: 150 DRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGIAVGMATNMAPHNL 209 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + +I++P+ + +LMEI++GPDFPTG VILG GIK+AY TGRG I IR V+ Sbjct: 210 GEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAYETGRGPIKIRAVTS 269 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ D+++IVV+E+PYQVNK+ ++E IA LVREK+IV I+DLRDESDR G RV IEL Sbjct: 270 IEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDESDRDGIRVSIELT 329 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + +VILNQLY++T +Q+ F + +AL P TL +L+ ++ R +V+++R+ + Sbjct: 330 RNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIYLEHRIDVILKRSMF 389 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 + KA ++AH+L GL IA+ ++DEV+ +IR S + A+ LM R Sbjct: 390 DMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTR--------------- 434 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L EVQ +AIL++RL +LTGL R I +E L I++ DI+ S Sbjct: 435 -----------FGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDE 483 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R IIK+EL ++++ RRT I ++ EDED I E+++VT+++ GY+KR+P+ Sbjct: 484 RKYSIIKEELHAIRERFADKRRTEITGSHVEFEDEDLIPVEEVIVTITNSGYIKRMPVDT 543 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG G+ +++D V D+FI STH ++FF++ G V+ +KV+ LP GS Q++G Sbjct: 544 YSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEGSRQSKG 603 Query: 616 KALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+L L + E +T T+ F ED+ ++ AT+ G V++ LSDF + ++G Sbjct: 604 KAVVNLLDLAENESVTATITVKEFEEDK------FLFMATRMGTVKKTPLSDFSNVRKAG 657 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+KLD DE+++V +I++ ++ G+ +RF +R GR + GVRG+ L Sbjct: 658 IIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPM-GRTARGVRGMRLTGD 716 Query: 733 DQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 D V+S+ IV + Y +R + ++ +R G +TSL+N + Sbjct: 717 DIVVSLDIVDLSTKLLTITENGYGKRTTFDEY-RGMKRGGQGVITIVTSLRNGPVIN--- 772 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + +K +++ ++T SE G R D R R+ +G++ +V Sbjct: 773 ----VKAVKEEDEVMVTSSE-GIFIRIPVKDIRAQGRNTQGVKIMNV 814 Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 54/91 (59%), Gaps = 4/91 (4%) Query: 652 TKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRF 708 T++G +R ++ + R G+ I + R+ +++V+ +E+++++T+ G +R Sbjct: 735 TENGYGKRTTFDEYRGMKRGGQGVITIVTSLRNGPVINVKAVKEEDEVMVTSSEGIFIRI 794 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 P+ IR GRN+ GV+ +++ GD+V+ +A Sbjct: 795 PVKDIRA-QGRNTQGVKIMNVRPGDKVVGVA 824 >gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684] gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684] Length = 883 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/910 (41%), Positives = 547/910 (60%), Gaps = 93/910 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 ++D+ I ++ +EM+++YL YA++VI+GRA+PD+RDGLKPVHRR+LF M +MGV+ Sbjct: 3 ATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMGVQ 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N+ K +RI GEVMGKYHPHG+A+IYD L RMAQD+S+R LL++GQGNFGSVD DP A Sbjct: 63 PNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDPAA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE RL + A +L D+ DTVDF PNYDG QEP+VL AR+PN+LVNG GIAVGM Sbjct: 123 AMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E + +A I+NP+ID+D LM+ IRGPDFPTG +ILG GI++AYATGRG Sbjct: 183 ATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILGVGGIRDAYATGRG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA---MLEKIAELVREKRIVDIADLRDES 303 + ++ +HIE S +E IVVTE+PYQV K +++KIA+LV EK+I +I DLRDES Sbjct: 243 RVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLRDES 302 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363 DR G R VIELKR V+LN+LY++T +Q+ F VNMVAL P+ +L ++ +V Sbjct: 303 DRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDNVPKTLSLREVIGRYVD 362 Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423 + EV+VRRTKY L +A DRAH+L GL IA AN+DEV+ IIR S + E AR L+ R Sbjct: 363 HQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVNR--- 419 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 LSE Q AIL++ L RLT L D +R E L Sbjct: 420 -----------------------FELSERQAEAILQMTLGRLTALEVDKLRQEHADLMER 456 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVT 541 I+E +IL R + IIK+EL + D RRT I EG +D+ED I + MV+T Sbjct: 457 IRELREILGDEDRQMAIIKEELQEISDAYGNERRTAISYAEGEIDIED--LIADQQMVIT 514 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GY+K +PL+ YR QRRGG G +G+ M+D D++ LF+ STH +LFF++ G VY+ Sbjct: 515 ITKTGYIKSLPLATYRQQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRS 574 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP S A+G+AL+NIL L +GER+ +++ + + Y++FAT+ G V++ + Sbjct: 575 KVYELPEASRTAKGRALVNILPLREGERVQSVLSTRDFSEAP---YLLFATRKGTVKKTE 631 Query: 662 LSDF-IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 L + I G IA+K+ DE+++V + +++++ ++ G VRF R GR+ Sbjct: 632 LQAYNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSM-GRD 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVRG+ + +VI+M I ++D Sbjct: 691 TSGVRGMDVGDSGEVIAMDIA----------------------------------RDDQD 716 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ++T + G R Y R + R KG+R +++ G Sbjct: 717 L-----------------LVITENGFGKRTRIDEY--RKTARGAKGVRTIRLTEAR--GG 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L V ++ +++ +S G + R V I RA++GV + + +D+ V ++ + ES Sbjct: 756 LAGALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVES 815 Query: 901 EIVDEAESTE 910 + + E+ E Sbjct: 816 DTAEADEALE 825 >gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] Length = 809 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 539/887 (60%), Gaps = 100/887 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K ARI Sbjct: 9 INIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DPPAA RYTE RL + Sbjct: 69 GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEARLAQI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 129 AEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ +HI + Sbjct: 189 CQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +R+ I VTEIPYQVNKA ++ KIAELV++++IV I+DLRDESDRQG RVVIELKR A Sbjct: 249 VD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIELKRDA 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR+++ L Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 A+DRAH+L GL A+ +D ++ IIR S N +TAR+ L+ Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLV-------------------- 407 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 S +Q +AIL+L+L RL L R I +E L I D+LS ++ Sbjct: 408 ------AEFDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461 Query: 499 GIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++K++ +K PR T I +G+++ ED + D++VT+S G++KRVP +V+R Sbjct: 462 ALVKEDAKDLKGSYGQPRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFR 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616 Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P + + A+G Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGT 581 Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 A++N++ + Q ERIT I+ FP D +++ AT G +++ L +F + SG Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAM L + DE+++ T+E DILL T++GQ +RFP+S +R + R S GV+ I L+KGD Sbjct: 636 IAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRT-SLRASGGVKAIVLSKGD 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM D + EG + Sbjct: 695 EVVSM---------------------------------------DVAQEGTL-------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++TV+E G GK T+ ++ +R+G G+ + +++ G +VA V++ DQ+ Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSETDQM 759 Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894 +L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + F+L + KG K+TS +F SG + A D++ +E LVA + I+L Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLATSDE---LVAAVETTEEKDILLA 661 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G IR PV+E+R + RA+ GV +K + VVS++ +E +V Sbjct: 662 TRMGQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQEGTLV 708 >gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822] gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822] Length = 852 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/874 (42%), Positives = 533/874 (60%), Gaps = 66/874 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LIEG GNFGS+D DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ +TVDF +DGS QEPVVL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+I NP+I LM+ I GPDFPTG ILGR+GIK+AY +GRGSI +RGV+ Sbjct: 188 LGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DR+ I+VTE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR G R+ Sbjct: 248 EIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY+ T +Q+ F NM+AL +P+ L L F+ FR +V++ Sbjct: 308 VIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRVQVII 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA +R H+L GL +A+ANLD ++++IR + + +A+REL+++ Sbjct: 368 RRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQ---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L + I+ E L +I + DI Sbjct: 418 ----------------FGLSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ II++EL +K TPRRT+IVE + D D I E V+ ++ GY+KR Sbjct: 462 LQRRERVDQIIQEELTQLKSTHATPRRTQIVEEEGGIVDIDLIANEQAVILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + Q R +G+SG ++++D V H +LFFS G VY +++P S Sbjct: 522 MPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSS 581 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ARG ++ +L + + E+IT+++ F ED+ Y+V T+ G +++ LS + Sbjct: 582 RTARGVPIVQMLPIPKDEKITSMVAVSEFTEDQ------YLVMLTRQGYIKKTALSAYAN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 I +G IA+ L D++ V +E+ I++ T+ G + F ++ GR + GVR Sbjct: 636 IRANGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVRS 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L D++IS+ I + Q G +E+ D ++E S Sbjct: 696 MKLKGTDEIISVDI-----------------LPGQVVANIGTSEDEIE---DENLE---S 732 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 EE E ++L ++ G+GKR FR+ NR+G G++A N L A+ Sbjct: 733 EELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRFK--NAQDQLAAIHI 790 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 VN D++++V+ +G +IR V+ I SR G+ Sbjct: 791 VNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGI 824 >gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] Length = 824 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/895 (42%), Positives = 549/895 (61%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL M ++G+ +K + K A Sbjct: 8 LLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD AA RYTE R+ Sbjct: 68 RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF PNYDG +EP V+ AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 GE +D A++DNPDI + LM+ I GPDFPTG +ILGR GI+ AY TGRGSI+IR Sbjct: 188 GETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSIMIRCKH 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 H+E+ + +IVVTE+PYQVNKA ++ KIA+LVREK+I I L DES+R+G R+VIEL Sbjct: 248 HLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ DV+LNQL+R TSLQ+ F VNM+AL+ P++ + +L ++ + +V VRRTK Sbjct: 308 RKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDVTVRRTK 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA DRAH+L GL IA+ ++DE++ IIR S N AR LM+ Sbjct: 368 YDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLME--------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q AILE+RL RLTGL RD I NE L I + DIL++ Sbjct: 413 -----------NFELSEIQANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDILANH 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+L II+ EL VK++ RRT I + DM+DED I ED+V+T++ GY+KR+P Sbjct: 462 DRVLQIIRDELTEVKNKYGDERRTEISDADYDMQDEDLIPVEDIVITMTTNGYIKRMPTD 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGG+G G+ + ++D V L +STH +L F+++G VY+ K +++P S A+ Sbjct: 522 TYHTQNRGGRGIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L+L++ E++ ++P D + Y++F TK+G V+R ++F I ++GKI Sbjct: 582 GLPVVNLLNLDKDEKVKALVPMKVDHEAE---YLMFVTKNGLVKRVPSAEFASIRQNGKI 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ T +++I++ AG N VR Sbjct: 639 AITLREGDELVGVKETTGDDEIII------------------AGSNGKAVR--------- 671 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 H D + R SG + D +V ++ R Sbjct: 672 -------FHEDG-----------VRPMGRSASG----VKGFNVDGAVVVGMATSR----- 704 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L VSE G+GKRT+ ++R++ R KG++ +++ + G LV+V VN ++ + Sbjct: 705 -DGTHLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITP--KTGDLVSVRAVNGDEDAM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +V++ G +IR+ V++I I SR T+GV + + A+ E V V + + +EA+ T Sbjct: 762 IVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQ--AEEAKDT 814 >gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] Length = 910 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/933 (39%), Positives = 559/933 (59%), Gaps = 91/933 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ Sbjct: 2 EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R L +GQGNFGSVDGD AA R Sbjct: 62 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG GIAVGMAT Sbjct: 122 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D VA ID+PDI++D LM+ + PDFPTG +I G G+ AY TGRG +V Sbjct: 182 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R H E+ R+ +VVTE+PYQVNK+ +E+IA+ VR++RI IADLRDESDR G R Sbjct: 242 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+GA+A+++ NQ+Y+++ LQ F VNMVAL G +P+ TL ++ +V R E+V Sbjct: 302 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ---------- 419 VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+ TAR+ L Sbjct: 362 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 421 Query: 420 --RSWN--------ASDIKDLIDLIDDSSY---TIGSDGTMYLSEVQTRAILELRLARLT 466 R+ N A + +D + + Y D +L+E Q AIL LRL+RLT Sbjct: 422 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 481 Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLL 525 GL R+ I E + +I+E IL+SR R + +IK+ELL+VK+ D RRT I G Sbjct: 482 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 541 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D+ ED I R+ +VVT+++ G KR P+ YR Q RGG G G R++DF+ L++ + Sbjct: 542 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 601 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641 H +L F+ G + + + +P G A+G+++ ++ ++ +R+ ++ EDE+ Sbjct: 602 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 661 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 N+ YV+ AT+ G V++ L + + +G I +K+D D+++ +N +++ + Sbjct: 662 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 721 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ----VISMAIVLHADADYDERICYMKH 757 G+ V F R GRN+ GVRG+ L GDQ +IS+ +H D D Sbjct: 722 GGRAVHFDEGDARPM-GRNTRGVRGMELP-GDQELVGMISVPPAMHDDLD---------- 769 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 +L ++E G+GKRT+ D+ Sbjct: 770 ------------------------------------------VLAIAEHGYGKRTALSDY 787 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ R GKG+ +++ + GALV++ V ++ ++++++ G +IR V EI R T Sbjct: 788 RVQGRGGKGL--ITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNT 845 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +GV + + + V R+ ++ DE E+ + Sbjct: 846 QGVQVIDLKDGDAIADVTRVADT---DEPEADD 875 >gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75] Length = 828 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/904 (41%), Positives = 560/904 (61%), Gaps = 96/904 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 RSEDRLNGVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ + ISGD GN Sbjct: 694 IRLNENDFVVGAVV------------------------ISGD--------------GN-- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V Sbjct: 714 ------------KLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D N +++++ +IRV + +IR R GV + +TA ++VV V + E + Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPEN 817 Query: 906 AEST 909 E++ Sbjct: 818 LETS 821 >gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] Length = 827 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/915 (40%), Positives = 564/915 (61%), Gaps = 100/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI + Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIES 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEERLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SISYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P S A GKA++N++SL E+I + + DE S + F TK G V+ Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKKGVVK 624 Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715 R LS+F NR SG A+ LD DE++S + + +L+ + LG ++FP+ +R Sbjct: 625 RTNLSEFGS-NRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVRE 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV+GI LA+ D V+ A+V+ D + Sbjct: 684 I-GRTTRGVKGIRLAENDFVVG-AVVISDDGNK--------------------------- 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L+VSE G GK+T + +R NR GKGI +++ Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQ- 749 Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G LV+V V+D N +++++ +IRV + +IR R GV + +TA ++V+ V Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYV 806 Query: 895 ERIRESEIVDEAEST 909 + E + E+T Sbjct: 807 NSCPKEEEPENLENT 821 >gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] Length = 814 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/891 (42%), Positives = 525/891 (58%), Gaps = 88/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SV I ++M+ +YL YA++VI+ RA+PD RDGLKPVHRRIL+ M MG+ N Y K A Sbjct: 6 IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDA+ARMAQD+S+R LI+GQGNFGS+DGD PAA RYTE RL Sbjct: 66 RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF N+DG+ +EPVVL AR PN+L+NG GIAVGMAT+IP HNL Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185 Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +I+N DI + LM II GPDFPTG +I+GR GI + Y+TGR + +R Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTVR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 GV+ IE+ G R I++TEIPYQVNKA ++E+IAELVRE ++ +I+DLRDESDR G +V Sbjct: 246 GVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSIV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+RGA +LNQLY+YT LQS FSVNM+AL +P L L+ F+ R+EV+ R Sbjct: 306 IELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEVLTR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KAR RAH+L GL IA+ANLD V+ IIR SP+ ETAR+ L++R Sbjct: 366 RTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIER----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+EVQ +AIL+++L RL L R I +E + I D+L Sbjct: 415 ---------------FKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++ ++L +I+ ++ + ++ RRTRI E D +ED + E +++T++ GY+KR Sbjct: 460 ANPRKILALIQTDMKELAEKYGDNRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V S YR Q RGGKG G +++ED +T + T ++LFF+ G VY +K ++P Sbjct: 520 VNASAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAG 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +G IN+L+L ERIT + S + Y + AT +G V+R LS+F + Sbjct: 580 RTDKGIPAINVLALEANERITVAVAV---RSFADARYCLMATVNGKVKRVDLSEFESVRP 636 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG IA+ L++ D++ V +LL T+ G VRF S +R GR + GV GISL Sbjct: 637 SGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESEVRSM-GRQASGVTGISLR 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +G +R+ M +I EE Sbjct: 696 EG-----------------DRVASM----------------------------DIVEEGG 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L V+ KGFGKR +F + R+ G+ A D I + G L V +N Sbjct: 711 G--------LLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQEN 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D++ L S G +RV V+ I R +GV I + + V S+ RI + E Sbjct: 763 DEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEE 813 Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 17/206 (8%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VKRV LS + + R G + + + D + + + VL + G+ + Sbjct: 621 GKVKRVDLSEFESVR--PSGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESE 678 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + QA G + +SL +G+R+ + M E+ ++ T G +R +L +F Sbjct: 679 VRSMGRQASG---VTGISLREGDRVAS-MDIVEEGGG-----LLLVTTKGFGKRVRLDEF 729 Query: 666 IQINRSGKIAMKLD----SRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720 + R+ M LD ++ L+V QEND + L + G +R +S+I F GR Sbjct: 730 VLKGRAIGGVMALDHKAIAKTGKLAVARVVQENDEVALFSASGVALRVKVSSI-PFKGRV 788 Query: 721 SVGVRGISLAKGDQVISMAIVLHADA 746 + GV + L +GD V S+A + +A Sbjct: 789 AQGVSIMHLDEGDSVASIARIPQEEA 814 >gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] Length = 851 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/906 (39%), Positives = 549/906 (60%), Gaps = 91/906 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV + Sbjct: 3 EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVDF+ N+D + QEP V+ + P +L+NG GIAVGMATN+ Sbjct: 123 EARMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A IDN DI++D L+ I+ PDFPTG +I G G++ A+ TGRG IV+R Sbjct: 183 PHNLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E+ +G RE I+VTEIPYQVNKA M++ A+LV +K+I I+++RDESDR G RVV Sbjct: 243 AKVGFEEVNG-REAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELKR A +V+LN LY+YT LQS FSVN +AL +P+ L ++ FV R +VVVR Sbjct: 302 YELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIYHFVEHRHDVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R ++ L KA +RAH+L GL IA N+DEV++IIR S + + AR L++R Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q RAI+E+RL +LTGL +D +R E + I ++L Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S+ + +IK EL ++D+ RR++I D+ ED I E +V+T+SH GY+KR Sbjct: 456 ASKEMRMQVIKDELAEIRDKYGDERRSQIEYSGGDVSIEDLIADESVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ RD+DF+ LF+ + H +++F+ G Y +V+ +P G+ Sbjct: 516 SLSEYKTQNRGGVGQKSAGTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++++ +++ + + D+ + ++ TK G V++ L + + Sbjct: 576 ASKGRAIQNLINIESDDKVKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + + +L+ K G+ VRF R GR + GVRGI+L Sbjct: 636 VNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPM-GRTASGVRGITL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A + D+VI + V D + Sbjct: 695 ADENDEVIGIVTVNKEDVN----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842 E IL V+E G+GKRT + +RI+NR GKG++ ++++ + GAL+ Sbjct: 714 --------ETQILVVTENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITE--KTGALI 763 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESE 901 A+ V D+D +++++ G IR+ V+++R+ RAT+GV + + ++ + +V ++ RE E Sbjct: 764 AINNVTDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLINIKGNDSIAAVTKVLREDE 823 Query: 902 --IVDE 905 ++DE Sbjct: 824 EIVLDE 829 >gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 811 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/884 (40%), Positives = 546/884 (61%), Gaps = 88/884 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTVFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLELKEKYNDKRRTTIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G S + ++DF + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGRGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 I++L++GE++ + E S VVF TK+G +++ L +F IN SG IA+K Sbjct: 583 IINLSEGEKVRDTIVIKEFSSEKE---VVFITKNGLIKKTSLGEFKNINNSGLIAIKTKE 639 Query: 681 RDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 D+I+ V E +E +IL+ T G C RF IR GR++ GV+ I+L +GD V+S Sbjct: 640 DDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGDAVVS 697 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 ++ + + D Sbjct: 698 AMLIKNPETD-------------------------------------------------- 707 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V VN++++++ ++ Sbjct: 708 --ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVNEDEELMCIT 763 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G +IR ++EI RAT+GV I A DE+V ++ +I++ E Sbjct: 764 SNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] Length = 844 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/719 (47%), Positives = 480/719 (66%), Gaps = 30/719 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE V I+ EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M MG+ +K Sbjct: 3 EETARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A + GEVM YHPHG+++IY+A+ RMAQD+++R +L+EGQGNFGSVDGDP AA RY Sbjct: 63 FRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R K A LL D+ K+TVDF PNYDG +EPVVL +R+PN+L+NG GIAVGMATNI Sbjct: 123 TESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EVVDG +A+IDNPDI + LM+II+GPDFPT ILG +GI+ AY TGRGSI++ Sbjct: 183 PPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIM 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ + +I+VTEIPYQVNKA ++EKIAELVREK+I I DLRDESDR+G R+ Sbjct: 243 RAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R V+LN L+++T +QS F VNM+AL +P L +L ++ + ++ Sbjct: 303 VMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVIIR 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A RAH+L GL IA+ ++DE++ +IR S E AR LM+ Sbjct: 363 RRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLME----------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +Y+ LS Q +AIL++RL RLTGL R+ I NE L ++I E I Sbjct: 412 -------NYS--------LSYEQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +++ II+ EL +K++ RRT I +ED D I ED+V+T++H GY+KR Sbjct: 457 LADEAKIYAIIRDELGEIKEKFGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S YR+Q+RGG+G G+ +D+DFV L+I ++H ++FF+S G VY+ K + +P S Sbjct: 517 LPVSTYRSQKRGGRGVQGLGTKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G +IN++ + +GER++ ++P E + Y+ FATK G +++ L + I + Sbjct: 577 RTAKGTPIINLIQIEKGERVSAVIPVKEFDQEH---YLFFATKKGIIKKTTLESYENIRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G IA+ L DE++ V + I++ T G VRF +R GRN+ GV+GI+L Sbjct: 634 GGLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTM-GRNATGVKGITL 691 >gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102] gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102] Length = 923 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/723 (46%), Positives = 479/723 (66%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V++ D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LIR V +IR RA GV + + + E +VS+ Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + ++++D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686 +++ F PE E S +L V+ AT +G +R ++D+ + N+ G+ IA+ R+ ++++ Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 ++ +D++L T G +R + IR GR + GVR I+L +G+ ++S+ Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890 Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V +VS ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 + + KV ++ R A + +++L++GE + ++ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890 >gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114] gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114] Length = 923 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/723 (46%), Positives = 480/723 (66%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R++K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S N A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R W +S ++D++ D + + +G YLSE+Q AIL + L LTGL Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I E +L +I + +DILS R+ II++EL +K RR+ I D+ Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V++ D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVSETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G LIR V +IR RA GV + + + E +VS+ Sbjct: 856 GVLIRTKVEQIRETGRAAAGVRLINLDEGETLVSL 890 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/232 (23%), Positives = 106/232 (45%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--SQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRD-EILS 686 +++ F PE E S +L V+ AT +G +R ++D+ + N+ G+ IA+ R+ ++++ Sbjct: 782 VSLITFAPEAEQS--DLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA 839 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 ++ +D++L T G +R + IR GR + GVR I+L +G+ ++S+ Sbjct: 840 ATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETLVSL 890 Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V +VS ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVA-ATLVSETDDLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 + + KV ++ R A + +++L++GE + ++ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVRLINLDEGETLVSL 890 >gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279] gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279] Length = 806 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/880 (42%), Positives = 532/880 (60%), Gaps = 87/880 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+G Q GV ++K+VKCA Sbjct: 4 VLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEVMGK+HPHG+AAIYD L R+AQ W+LR LI+GQGNFGSVDGDPPAA+RYTE RL Sbjct: 64 KIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 LL DL K+TV F PNYDG+ ++P VL A PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +IDNP++ L+ +M+++ GPDFPTGA L R GIK AYATGRGS+ +R Sbjct: 184 GEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAK-LSRRGIKEAYATGRGSLKVRARVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +G R +V TEIPYQVNKA ++ +IA LVR K I +IA LRDESDRQG R+ +ELK Sbjct: 243 NEDKNG-RAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ V+LN+LY+++ LQ+ F+VN++A+ +P+ TL+ +++ ++ R VV +RT+Y Sbjct: 302 RGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGEPKVLTLLELMRHYLDHRGLVVRKRTEY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+RAHVL GL IA+ ++DEV+ +IR S + AR LM Sbjct: 362 ELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLM----------------- 404 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G L+EVQ +AIL++RL RL GL RD ++ E L EI IL Sbjct: 405 ---------GRFSLTEVQAQAILDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGDEK 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL +++ ELL++KD+ RRT+I E ED I E MV+T++ G+VKR PL Sbjct: 456 RLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTPLEA 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGG G ++ED +F+ S H ++L F++ G VY EKV LP S QARG Sbjct: 516 YRAQGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++++L L +GE + ++ + Y VFATK+G +++ ++ ++ ++ +G IA Sbjct: 576 THIVSLLPLQEGEEVAALLNVRDLTQEG---YFVFATKNGLIKKTEIKEYQNLSSAGLIA 632 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733 + L D ++ V + + ++L T+ GQ +RF +S +R GR S GV GI +G D Sbjct: 633 INLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRA-TGRASQGVTGIRFKEGRDD 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ I L G+ E Sbjct: 692 RVVSLVI-----------------------LPKGEESE---------------------- 706 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V G+GKRT ++ + R G G+ + ++ ++G L A+ V N+ + Sbjct: 707 ------VLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNE--KVGQLAALMRVQGNEDL 758 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +++S +G IR V+ I RAT GV + + + + + S Sbjct: 759 LVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDEIAS 798 Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 117/261 (44%), Gaps = 54/261 (20%) Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711 K+G+ RR ++++F +E S+E ++ +++T T G R P+ Sbjct: 471 KYGDQRRTQITEF----------------EEGFSLEDLIEDEPMVITLTSQGFVKRTPLE 514 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---------DYDERICYMKHMSAQR 762 A R GR +G + + D+ IS+ + D Y E++ + S Q Sbjct: 515 AYRA-QGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQA 573 Query: 763 R-------LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 R L + EE+ +L N ++L +E + + ++ G K+T Sbjct: 574 RGTHIVSLLPLQEGEEVAALLN------------VRDLT-QEGYFVFATKNGLIKKTEIK 620 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 +++ N S G+ A + + E ALV V + DQ++L + G IR ++++R R Sbjct: 621 EYQ--NLSSAGLIAIN---LLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRATGR 675 Query: 876 ATKGV--VIFSTAKDERVVSV 894 A++GV + F +D+RVVS+ Sbjct: 676 ASQGVTGIRFKEGRDDRVVSL 696 Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust. Identities = 58/277 (20%), Positives = 119/277 (42%), Gaps = 30/277 (10%) Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVR 535 + + L I ++R R+ G EL + R T IV L E E+ + + Sbjct: 545 MHDTLLIFTNRGRVYGEKVHELPEASRQ---ARGTHIVSLLPLQEGEEVAALLNVRDLTQ 601 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E V + G +K+ + Y Q G + + + D + + I V+ + Sbjct: 602 EGYFVFATKNGLIKKTEIKEY--QNLSSAGLIAINLLENDALVGVAIAQEGDQVMLATQS 659 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSL----NQGERITTIMPFPEDESSWNNLYVVFA 651 G + R + +A G+A + + + +R+ +++ P+ E S V+ Sbjct: 660 G-----QAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESE----VLAV 710 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI--LSVETCTQEN-DILLTTKLGQCVRF 708 HG +R +S++ R G + ++ +++ L+ Q N D+L+ ++ G +R Sbjct: 711 GSHGYGKRTPISEYPLQGRGGMGVITFNTNEKVGQLAALMRVQGNEDLLVLSRRGNAIRT 770 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 +S+I + GR + GVR ++L+ D++ S ++ D Sbjct: 771 KVSSIAQY-GRATSGVRVMNLSDKDEIASAFVIAPQD 806 >gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] Length = 837 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/905 (40%), Positives = 557/905 (61%), Gaps = 95/905 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRI++ M+++ +K + KCA Sbjct: 9 VHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L D+ K+TVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ V +ID+ + ++ +++II+GPDFPTG +ILG GI+ AY TGRG I + Sbjct: 189 REVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+V+E+PY VNKA ++EKIAELVR+K+I I DL D+S R+G RV Sbjct: 249 RAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRV 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R A+A+VILNQLY++T LQ F V M+AL G +P+ L+ +L ++ +EEVV Sbjct: 309 VIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLMEMLNYYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S + A+ ELM+R Sbjct: 369 RRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++VQ++AI+++RL LTGL R+ + E +L +I+ I Sbjct: 421 ------------------LTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L ++D+ RRT I D+ ED I RED+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPREDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ RGGKG G+ DED+V +LF+ +TH ++FF++ G VY+ K + +P S Sbjct: 523 MSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A++N+L L GE+I+ ++P E ++ Y++ ATK G +++ + ++ + + Sbjct: 583 RTSRGTAIVNLLQLMPGEKISAVIPI---EKYNDDEYLLMATKKGLIKKTPIKEYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ ++D+ + TK GQC+RF S +R GR S+GVRG++L Sbjct: 640 TGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRP-TGRTSMGVRGMNLV 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M I D+ E + ++ +R I Sbjct: 699 DRDEVIGMQI----DSQGTELLIVSEYGMGKRTSI------------------------- 729 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++F T +G GK Y +I+ ++G +V V V+++ Sbjct: 730 ------DEF--TAQNRG-GKGVKCY--KITEKTGN---------------VVGVKAVDED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-----ESEIVDE 905 ++I++++ +G +IR+ + I R T GV + + + ++V + ++R E ++V+ Sbjct: 764 NEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIAKVRRGDESEDDLVEP 823 Query: 906 AESTE 910 ESTE Sbjct: 824 EESTE 828 >gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101] gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101] Length = 879 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/907 (39%), Positives = 550/907 (60%), Gaps = 92/907 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +GV + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + ++ D+ K+TVDF+ N+D + EP V+ R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV++G +A +DN DI++D LM I+ PDFPTG +I G G++ A+ TGRG IV+R Sbjct: 183 PHNLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 E+ G RE I+VTEIPYQVNKA M+++ A+LV EK+I IA++RDESDR G R+V Sbjct: 243 AKVGFEEVEG-RESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A+ +V+LN LY+YT LQS FSVN +AL +P+ L ++ F+ R +VVVR Sbjct: 302 YILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQLLNLKDMIHYFIEHRHDVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA +RAH+L GL IA N+DEV+ +IR S N + AR +L++R Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS++Q RAI+E+RL +LTGL +D +R E + L I+ +L Sbjct: 411 ---------------FKLSDIQARAIVEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + + + +IK+EL ++D+ RR++I D+ ED I E++V+T+SH GY+KR Sbjct: 456 ADVNLRIDLIKEELTEIRDKYGDDRRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G+ RD+DF+ +F+ + H ++FF+ G + +V+ +P GS Sbjct: 516 NLSEYKTQNRGGVGQKSAGTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+A+ N++++ +++ + + D+ N +V TK G V++ L + + Sbjct: 576 TAKGRAIQNLINIESDDKVKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G A+ + DE+L + E+ I+L K G+ VRF + R GR + GVRGI+L Sbjct: 636 ANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRFEETKTRPM-GRTASGVRGITL 694 Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+VI M +T KND Sbjct: 695 KDDTDEVIGM---------------------------------VTVGKND---------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842 + + IL V+E G+GKRT D +RI+NR GKG++ +++ ++ G L+ Sbjct: 712 ------VADSQILVVTENGYGKRTKLVDDDGEDVYRITNRGGKGVKTLNIT--DKTGKLI 763 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----R 898 ++ V D+D +++++ G IR+ + ++R+ RAT+GV + + + + +V ++ Sbjct: 764 SINAVTDSDDLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDA 823 Query: 899 ESEIVDE 905 E +VDE Sbjct: 824 EEVVVDE 830 >gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265] gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265] Length = 827 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/897 (42%), Positives = 547/897 (60%), Gaps = 90/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K A Sbjct: 6 ILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A+YD+L RM QD+SLR LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TV++ N+D S +EP VL + PN+LVNG GIAVGMATNIP NL Sbjct: 126 KAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG A+IDNPDI+++ LM+ + PDFPTG +I G G++ AY TGRG +VIR + Sbjct: 186 REVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIYGYEGVRLAYTTGRGKVVIRARAL 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE IVVTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT+ Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQFYIQHRNEIVLRRTR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 366 YDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q++AILE+RL RLTG+ R I E I+E DIL+S Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II+ ELL V++ RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 ERQMQIIRTELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G +++DF+ +F+ STH +LFF+S G Y KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G++L NI+ LN GE I T + DE +++ AT G V++ L +F + R+G Sbjct: 580 GRSLANIMELNPGETIKTYINIRNFDEPG----FIMMATADGIVKKTALEEFSRPRRNGI 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ +D+ D +L ++ ++L G VRFP S +R GR ++GV+GI+L +G+ Sbjct: 636 AAITIDTGDALLDARLTDGDHQVILAKSSGLVVRFPESQVRPM-GRTAMGVKGITLDRGE 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + ISM +T+ + D++ Sbjct: 695 KCISM---------------------------------VTTKRLDTA------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+D + Sbjct: 709 ------LLAVTDNGFGKRSKVEDYRLTKRGARGV--ITLKAHEKIGALVGLLDVNDDDDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 I+++ G + R V++IRI R T GV + + + V ++ R+ ++ DE TE Sbjct: 761 IIITSHGIVNRQHVSDIRITGRNTSGVRLVRLMEGDAVSALARVPKT---DEDTDTE 814 >gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori] Length = 826 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/877 (41%), Positives = 545/877 (62%), Gaps = 87/877 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E ++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A GKA++N++SL E+I + +D S+ +L F TK+G V+R LS+F Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLS-TKDFSNERSL--AFFTKNGVVKRTNLSEFGSNRSC 637 Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI L Sbjct: 638 GIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRLN 696 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V+ A+V+ D + Sbjct: 697 ENDFVVG-AVVISDDGNK------------------------------------------ 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+D Sbjct: 714 ---------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDDE 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 N +++++ +IRV + +IR R GV + +TA Sbjct: 763 NLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8] gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8] Length = 949 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/931 (39%), Positives = 558/931 (59%), Gaps = 91/931 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+ Sbjct: 41 EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 100 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R L +GQGNFGSVDGD AA R Sbjct: 101 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 160 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG GIAVGMAT Sbjct: 161 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 220 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D VA ID+PDI++D LM+ + PDFPTG +I G G+ AY TGRG +V Sbjct: 221 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 280 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R H E+ R+ +VVTE+PYQVNK+ +E+IA+ VR++RI IADLRDESDR G R Sbjct: 281 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 340 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+GA+A+++ NQ+Y+++ LQ F VNMVAL G +P+ TL ++ +V R E+V Sbjct: 341 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 400 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ---------- 419 VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+ TAR+ L Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460 Query: 420 --RSWN--------ASDIKDLIDLIDDSSY---TIGSDGTMYLSEVQTRAILELRLARLT 466 R+ N A + +D + + Y D +L+E Q AIL LRL+RLT Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520 Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLL 525 GL R+ I E + +I+E IL+SR R + +IK+ELL+VK+ D RRT I G Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 580 Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 D+ ED I R+ +VVT+++ G KR P+ YR Q RGG G G R++DF+ L++ + Sbjct: 581 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 640 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDES 641 H +L F+ G + + + +P G A+G+++ ++ ++ +R+ ++ EDE+ Sbjct: 641 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 700 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 N+ YV+ AT+ G V++ L + + +G I +K+D D+++ +N +++ + Sbjct: 701 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 760 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ----VISMAIVLHADADYDERICYMKH 757 G+ V F R GRN+ GVRG+ L GDQ +IS+ +H D D Sbjct: 761 GGRAVHFDEGDARPM-GRNTRGVRGMELP-GDQELVGMISVPPAMHDDLD---------- 808 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 +L ++E G+GKRT+ D+ Sbjct: 809 ------------------------------------------VLAIAEHGYGKRTALSDY 826 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R+ R GKG+ +++ + GALV++ V ++ ++++++ G +IR V EI R T Sbjct: 827 RVQGRGGKGL--ITLNRTDRTGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNT 884 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +GV + + + V R+ ++ DE E+ Sbjct: 885 QGVQVIDLKDGDAIADVTRVADT---DEPEA 912 >gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] Length = 860 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/889 (39%), Positives = 544/889 (61%), Gaps = 89/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M++ Y+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 24 IKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS+R L++G GNFGSVDGD AA RYTE RL Sbjct: 84 RIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSVDGDGAAAMRYTEARL 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + ++ D+ KDTVDF PN+D + +EP +L +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 144 TKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTTGIAVGMATNIPPHNL 203 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EVV+ V +IDN + +++ +++II+ PDFPTG +ILG G + AY TGRG +++ Sbjct: 204 REVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTRGAEEAYRTGRGKVIV 263 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +IVVTE+PY VNKA M+ KIAELV+ K++ I LRDESDR+G RV Sbjct: 264 RAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDGITALRDESDREGMRV 323 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+ + +++LN+LY++T +Q F + M+AL +P+ ++ +LK ++ +EEVV Sbjct: 324 VIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVNNEPKVLSITEMLKHYIKHQEEVVT 383 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +R H+L GL IA+ N+DEV++IIR S A+ +LM Sbjct: 384 RRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKEQLM------------ 431 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G L++VQ +AI+++RL LTGL RD + E L +I+E I Sbjct: 432 --------------GRFGLTDVQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAI 477 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+I+ E+ + ++ R+++I + D++ ED I + V+ ++ LGY+KR Sbjct: 478 LADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPNVNTVIAMTSLGYIKR 537 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + ++AQ RGGKG G+ D D+V D+ + +TH V+FF++ G VY+ K +++P S Sbjct: 538 MSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKAYQIPEAS 597 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A++N+L L GE+I+ ++P E L++V TK G V++ ++DF + + Sbjct: 598 RTSRGMAIVNLLQLAPGEKISAMIPVKGFEDEEKCLFMV--TKKGTVKKTPITDFSNVRK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+T T++ ++ L TK G C+ F S +R+ + R+S+GVRG+ L Sbjct: 656 TGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITS-RSSIGVRGMMLD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+++ M + D+ Sbjct: 715 DTDEIVGMQLNTQGDS-------------------------------------------- 730 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSEKG+GKRT+ +F R GKG++ +++ + G ++ V VND+ Sbjct: 731 ---------LLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITE--KTGNVIGVKAVNDD 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++I+++++ G +I++ ++EI I R T GV + + K V + ++RE Sbjct: 780 NEIMMITNAGIIIQLRMDEITIHGRVTSGVKMINLDKGVTVAKIAKVRE 828 >gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] Length = 831 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/887 (41%), Positives = 528/887 (59%), Gaps = 89/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + DEMQ Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K A Sbjct: 16 VIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++++YDA+ R+AQD+S R L+++G GNFGSVDGDP AA RYTE R+ Sbjct: 76 RIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVDGDPAAAMRYTEVRM 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF PNYD S +EP VL A+ P +L+NG GIAVGMATNIP HNL Sbjct: 136 GKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD CV +ID+PD ++ LM ++GPDFPTGA ILG +GI+ AY TGRG + +R +H Sbjct: 196 GEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQAYTTGRGVVKVRAKTH 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++ +IVVTEIPYQVNKA ++E IA LV++K + I DLRDESDR+G R+VIEL+ Sbjct: 256 VEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLRDESDRKGMRIVIELR 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +++LN+LY++T LQ F + M+AL P L IL+ ++ +++V+ R+ +Y Sbjct: 316 SDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEYYLDHQKDVITRKCRY 375 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA+ +LDEV+ IR S N E A+ LM++ Sbjct: 376 ELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEKFG------------- 422 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R I +E + I D+LS Sbjct: 423 -------------LSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEH 469 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +++GI +++LL VK RRT IV D+E ED I ED+V+T+SH Y+KR L+ Sbjct: 470 KIMGIAREDLLDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVITISHQSYIKRQALTN 529 Query: 556 YRAQRRGGKG---RSGVVMRDE-----DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +R Q RGG+G SG +++++ DF L + STH ++LFF++ G VY++K + +P Sbjct: 530 FRNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIP 589 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G + N+L L + E++ ++ S ++ AT G V+R +S+F Sbjct: 590 EASRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKS 649 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G IA+ L +E++ V+ + NDILL T+ G + F +R GR S GVRGI Sbjct: 650 ARKGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVRPM-GRTSHGVRGI 708 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SL D V+SM D+ D DT E Sbjct: 709 SLRPHDSVVSM------DSCVD------------------DTGE---------------- 728 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTV++KG GKRT ++R+ R GKGI V+ + G +V + Sbjct: 729 ------------VLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVT--DRTGLIVGSKFI 774 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ I+L+S G +IR+ +I R +GV + ++V ++ Sbjct: 775 NETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVAAL 821 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 130/295 (44%), Gaps = 35/295 (11%) Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG----- 523 G I E N + + E L + S+ +L + + + + P +R +G Sbjct: 543 GSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFIRN 602 Query: 524 LLDMEDEDCI---------VRED---MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571 LL +E+ + + + ED + ++LGYVKR +S +++ R+GG + + Sbjct: 603 LLPLEENEKVNAVIAVKSGISEDEKKFLFMATNLGYVKRTSVSEFKSARKGG--LIAINL 660 Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGER 629 + + + D+ + S H +L + G+ + E R P R + +SL + Sbjct: 661 GEGEELIDVKLTSGHNDILLATRDGYAIHFLEDDVR-----PMGRTSHGVRGISLRPHDS 715 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILS 686 + ++ +D V+ T G +R +S++ R GK + L D I+ Sbjct: 716 VVSMDSCVDDTGE-----VLTVTDKGQGKRTDISEYRVQTRGGKGIINLKVTDRTGLIVG 770 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 + + +DI+L + G +R + I + GRN+ GV+ + L GD+V ++AIV Sbjct: 771 SKFINETHDIMLISAAGIIIRMNAADISTY-GRNAQGVKLMDLEAGDKVAALAIV 824 >gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] Length = 828 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNF S+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D V+++PD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA VILN L++ TSLQ+ FS NM+A+ P+ +L I+ +++ ++EV++R Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+E+ +K + PRRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L GE I TI+ ++E++ + + F TK G V+R ++S+F I + Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFF--FTTKQGIVKRTEVSEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL D++++V + ++DI++ T G VRF ++IR GR++ GVRG+ L Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+V+ + + D +E+ Sbjct: 693 EDDRVVGASRIR-------------------------DNQEV------------------ 709 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 L ++E GFGKRTS+ D+ R GKGI+ ++ N G L + V+ Sbjct: 710 ----------LVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKN--GQLAGLVTVDGT 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR V I RAT GV I D ++V+ Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT 800 Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R +E K F T ++G KRT +F +N G+RA K+ E L+ V + Sbjct: 602 RKEETAGKSFFFTT--KQGIVKRTEVSEF--NNIRQNGLRAL---KLKEGDQLINVLLTS 654 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D II+ + G +R IR R+ GV +D+RVV RIR+++ V Sbjct: 655 GQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709 >gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 809 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/894 (40%), Positives = 563/894 (62%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I+VTE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S + + IIK+E+L +K++ RRT+I++ D E+E+ I ++ V+T++H GY+ Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PL Y++Q+RGG+G +G+ R+EDFV D+F+ +TH +LFF+ G V++ + + +P Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS QA+G A++N++ + + E+IT M + + Y++ TK+G +++ LS+F Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKD----FKEGYLMMCTKNGTIKKVLLSEFENT 631 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++GK A+ L D ++ V+ + ++I+L + G CV F + +RV GR++ GV+G++ Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++ M +D Y +C ++ +R I E Sbjct: 691 LEDGDFIVGMEKA--SDGKY--LLCVTENGFGKRSEI----------------------E 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ K + +LT +++++++GK +V + VN Sbjct: 725 EYRKTKRGAKGVLT--------------YKVTDKTGK---------------IVDIKMVN 755 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901 D+D+I++ S +G IR+ V+++ + R T+GV + + +V S+ RI+ E Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809 >gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] Length = 813 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/893 (41%), Positives = 555/893 (62%), Gaps = 90/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE K I V + +M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A + NP+I + L EII+GPDFPTGA ILG++GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A+A+++LN LY+ T L++ F + +AL P+ L ++K ++ ++ VV Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L+KA+ R H++ GL IA+ N+DE+++IIR S + + ++ +R Sbjct: 363 RRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+++Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 414 -----------------FGLTDLQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L+G+I++E+L +K++ RRT+IV EG D+E+ I +ED++++++H GY Sbjct: 457 ILNDEEKLIGVIEEEILEIKEKFADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY + +P Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S Q+RG+A+INI+SL E+IT IM E +N +VF T+ G +++ F Sbjct: 575 EASRQSRGQAIINIISLATNEKITDIMELSE---LSDNSQLVFQTEKGKIKKTDAQLFTN 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I R+G IA+ L+ D ++S+ DI++TT+ G ++F S IR GRN+ GVR I Sbjct: 632 IQRNGIIAISLEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSM-GRNARGVRAI 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L+K +D+ V NI E Sbjct: 691 RLSK---------------------------------------------DDNVVSMNIVE 705 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + E ++L V+ GFGK+TS +F NR GKG+R +++ + G +VA P Sbjct: 706 D--------EVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTGNVVATLPA 755 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRE 899 N +D I++VS KG +IR+ +I R T GV + + E +VSV + E Sbjct: 756 NLDDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVTKYYE 808 >gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] Length = 853 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/893 (41%), Positives = 530/893 (59%), Gaps = 62/893 (6%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ I V+I +EM++SY+ Y+++VI+GRA+PD+RDGLKPVHRR+L+GM ++G+ + Sbjct: 2 EAEKPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASA 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+AA+YD + RMAQD+++R L++GQGNFGS+DGD PAA R Sbjct: 62 PYKKSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ KDTVDF+ N+DGS +EPVVL A PN++VNG GIAVGMAT Sbjct: 122 YTEARLTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATK 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE VD VA+IDNPDI LD L++ + PDFPTG +I G +G+K AYATGRG I+ Sbjct: 182 IPPHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRIL 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR H E+ R +V+TEIPYQVNK++++EKIA LVRE+RI I D+RDESDR+G R Sbjct: 242 IRARIHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+EL++ A VI NQLY+YT Q F VNMVAL +P TL +++ ++ R EVV Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA +RAH+L GL IA+ +LD V+ IIR+S +P+ AR+ LM+ + Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + + L+E Q AIL LRL+RLTGL R + E +L EI+ Sbjct: 422 QRERL---GLPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRS 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S II++ELL +K + RRT I G D ED I E +VVT+SH G + Sbjct: 479 ILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLI 538 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P+ +YR Q RGG G MR++D++ LF H +LFF+ G Y +V+ +P Sbjct: 539 KRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPE 598 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNVRRNKLSD 664 GS + G+++ N++ + +R+ ++ E+ YV+ AT+ G V++ +L Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + G IA+ DE++ +LL + G+ VRF S +R GRN+ GV Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPM-GRNTRGV 717 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L G E++ M +S + Sbjct: 718 RGIALETG-----------------EQVVGMVAVSPE----------------------- 737 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 IL++S G+GKRT ++ + R GKG+ ++ G L+A+ Sbjct: 738 -----------ASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITP--RTGRLIAI 784 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D +++++ G +IR+ V +I R T+GV + + + V R+ Sbjct: 785 KAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVTRL 837 Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 EQ ++T+S +G KRT + +R R G G++A+ + + + I L F ++D ++ Sbjct: 526 EQVVVTLSHQGLIKRTPVHIYRQQGRGGVGMKASGMREDDYIEHL---FACKNHDYLLFF 582 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEI 902 +D G + V +I SR + G I A D+RV +V IR+ + Sbjct: 583 TDHGRCYWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDF 631 >gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] Length = 818 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/884 (40%), Positives = 538/884 (60%), Gaps = 92/884 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G+ + EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M G+ + + K Sbjct: 16 GVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMHDSGILPTRPHAKS 75 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 AR G+V+GKYHPHG++A+YD + R+AQD+S+R+ L++G GNFGS+DGD AA RYTE R Sbjct: 76 ARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGSIDGDSAAAMRYTEAR 135 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L K A LL DL K+TVD++PNYD S QEPVVL AR+PN+LVNG GIAVGMATNIP HN Sbjct: 136 LAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGSNGIAVGMATNIPPHN 195 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE +D ++DNPD+ +D LM++I GPDFPTG +I+GR GIK+AY TGRGS+ +R Sbjct: 196 LGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKDAYETGRGSLTVRSRH 255 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313 I ++ ++ IV+TEIPYQVN+ +++KI ELVR+K++ +I+++ D +DR ++I+ Sbjct: 256 KIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNVHDGADRNSPVDIIID 315 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK A V+LN+LY++T LQ F V +AL P +L +L+ ++ +E+V+VRRT Sbjct: 316 LKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREMLRHYILHQEDVIVRRT 375 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA +RAH+L GL IA+ N+DEV++IIR S A L +R Sbjct: 376 RFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQER------------- 422 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE QT AILE+RL RLTGL R + +EL L +I ILS Sbjct: 423 -------------FNLSEAQTAAILEMRLRRLTGLERHKLEDELAELKEKIAYYKRILSD 469 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 S + +IK+ELL +K +TPRRT + D++ ED I E++ VTV+ GYVKR+P+ Sbjct: 470 ESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDVEDLIADEEVAVTVTKAGYVKRIPV 529 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR Q+RGGKG GV +++ DFV LF+ STH+ +LFFS+ G VY+ KV+ +P S A Sbjct: 530 SAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEASRHA 589 Query: 614 RGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 RG A++N+L L +GE I ++ FPEDE Y++F T+ G V++ ++ + + R Sbjct: 590 RGTAIVNLLPLVKGESIAAVIATKDFPEDE------YLMFGTEQGMVKKTSMNLYDRTRR 643 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ L D++++V D+++ + G+ +++ +R GR+++GVRG+++ Sbjct: 644 DGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSM-GRDTMGVRGMTVP 702 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +V+ + I A D D Sbjct: 703 ANTKVLGLEI---ARPDTD----------------------------------------- 718 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++E G+GKRT ++ +R G+G+ + + G L A+ V ++ Sbjct: 719 ---------LLVITENGYGKRTPVSEYPSHHRGGQGVFT--IVMTAKKGNLSAMKVVAES 767 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D+++++S+ G +IR ++ RAT+GV + + A ++V +V Sbjct: 768 DELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAV 811 Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 100/224 (44%), Gaps = 18/224 (8%) Query: 683 EILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI- 740 E + VE + ++ +T TK G R P+SA R R G++G++L + D V + + Sbjct: 501 EDIDVEDLIADEEVAVTVTKAGYVKRIPVSAYRQ-QKRGGKGMQGVNLKENDFVEHLFVA 559 Query: 741 ------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 + + A R+ + A R + L S+ I+ + E Sbjct: 560 STHSYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPE-- 617 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +++++ +E+G K+TS + + R G + A ++ + ++ L+AV V + +I Sbjct: 618 --DEYLMFGTEQGMVKKTSMNLYDRTRRDG--LIAINLKEDDQ---LIAVRRVKSGEDVI 670 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +VS G I+ E+R R T GV + + +V+ +E R Sbjct: 671 MVSSAGKAIKWNEGEVRSMGRDTMGVRGMTVPANTKVLGLEIAR 714 >gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] Length = 993 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/973 (39%), Positives = 560/973 (57%), Gaps = 88/973 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K H LL DL KDTV++ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 RKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A ++P I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ + R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+VI+N L++ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W + L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D S G DG +Y LS Q AI+ELRL RLTGL +D + E + + Sbjct: 426 GSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +I++EL + + R+T IVE +D ED I E MV+T Sbjct: 486 SQIAELTAILNDFNLLMNVIREELALILQQYGDARKTSIVESRIDFSREDLIPEEQMVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y AQRRGG+G+S M+++D++ L + S+H +VL F+++G VY+ Sbjct: 546 VSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF----ATKHGNV 657 KV+ +P S A+G+ ++N+L L++ E IT I+P + + F + Sbjct: 606 KVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKERLAAFKAFVKANAAQL 665 Query: 658 RRNK----------------------LSDF--IQINRSGKIAMKLDSRDEILS-----VE 688 + N+ +SD IQ+ + G D D+I++ E Sbjct: 666 QANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDDIINDFAQQAE 725 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 + + + T+ G R + F+ S G+R I L D +I +AI D Sbjct: 726 AVRKNFYVFMATEYGTIKRVELEQ---FSNVRSNGLRAIELNGDDTLIGVAIT-----DG 777 Query: 749 DERICYMKH----------------------------MSAQRRLISGDTEEITSLKNDSS 780 +++I + + A +L D EI S D S Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGS 837 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 IS + + +L SE G+GKRT DF R GKG+ A S+ N G Sbjct: 838 DSALISRIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GQ 895 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE---RVVSVERI 897 LV ++ + +++L+SD GTL+R +E+ R +GV + +E VVS+E + Sbjct: 896 LVGAVAIDASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAV 955 Query: 898 RESEIVDEAESTE 910 E E V+ E E Sbjct: 956 EEDEFVEAIEGAE 968 >gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] Length = 811 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/888 (40%), Positives = 550/888 (61%), Gaps = 96/888 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQ+ Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K D+I+ V E +E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ VS+ + G +V+V V++++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] Length = 848 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/895 (41%), Positives = 542/895 (60%), Gaps = 99/895 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP+VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E++ V +IDN + L+ +MEI++GPDFPTGA ILGR GI+ AY TGR I + Sbjct: 189 REIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRTGRAKIKV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + + +I+VTE+PY VNKA ++EKIA+LV+EK+I I + DES+R+G R+ Sbjct: 249 RAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L+ ++ +EEVV Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEYLKHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR + N A+ +LM+R Sbjct: 369 RRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q++AI+++RL LTGL R+ + NE L +I+E I Sbjct: 421 ------------------LSDAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LL +I+ E++ + D+ RRT I DM ED I ED ++ ++HLGY+KR Sbjct: 463 LADEKKLLTVIRDEIMIISDKYGDDRRTAIGYD-DDMSMEDLIPDEDTIIAMTHLGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ +ED++ DL + + H ++FF++ G VY+ K + +P Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKAYEIPEAG 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT I+P E ++ Y+ AT++G V++ + ++ + + Sbjct: 582 RTARGTAIINLLQLMPEEKITAIIPMRE---FNDDKYLFMATRNGMVKKTPMVEYEHVRK 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ DILL T+ G C+RF + +RV GR S+GV G+ Sbjct: 639 NGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRV-TGRVSMGVIGMRFE 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+VI M M +Q GD+ Sbjct: 698 DDDEVIGM------------------QMQSQ-----GDS--------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPV 847 +L VSE G GKRT +F NR GKG+ + TD + G LV V Sbjct: 714 ---------LLVVSENGMGKRTMITEFSAQNRGGKGVICYKCTD-----KTGYLVGAKLV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRES 900 ND +I++++ +G +IR+ V++I + R T GV + S +D +V S+ ++RES Sbjct: 760 NDGREIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDIKVASIAKVRES 814 >gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] Length = 835 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/894 (39%), Positives = 544/894 (60%), Gaps = 84/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 5 ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 65 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 125 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R Sbjct: 185 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRAKVD 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++I+V EIPY VNKA ++ +IA+L R K I I D+ DE+DR G R+VI+++ Sbjct: 245 IEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDVR 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E+VV RRT++ Sbjct: 305 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRRTEF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 365 DLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G LS+ Q +AIL++RL RLTGL R+ I E L I + DIL+ + Sbjct: 408 ---------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILAHKE 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++ + RRT + G + ++EDED I +D++VT++H GY+KR+P+ Sbjct: 459 RINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVD 518 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + ++DF+ L STH +LFF++ G VY K + +P A+ Sbjct: 519 EFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGRSAQ 578 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L+++ E+I+ ++ E++ ++ ++ F TK+G V+R + +F I +G Sbjct: 579 GIPIINLLNIDSQEKISAVINVSH-ETNDDDKFLFFTTKYGTVKRTPVPEFKNIRSNGLK 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ + +++ T+ G + F + +R GR + GVRGI L D Sbjct: 638 AINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRDHDF 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A LH D + Sbjct: 697 VIGAA-PLHQDDN----------------------------------------------- 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L +SE GFGK+T + ++ I R G G++ +V+K N G LV + V ++ I+ Sbjct: 709 -----VLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDEDIM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 LV+D+G +IR + + R+ GV + +V ++ ++ + + D+A + Sbjct: 762 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDGDDAPA 815 >gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11] Length = 811 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/889 (41%), Positives = 549/889 (61%), Gaps = 98/889 (11%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLELKEKYADKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG S + ++D+ + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E VVF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFLPEKE-------VVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K D+I+ V E +E +IL+ T G C RF IR GR++ GV+ I+L KGD Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRKGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 MVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQ 852 ILT++E G+GKRTS ++ NR GKG+ K+NE G +V+V V+++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINL---KVNEKTGKVVSVLEVSEDEE 758 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ ++ G +IR +NEI RAT+GV I A DE+V ++ +I++ E Sbjct: 759 LMCITSNGIVIRTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE] gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE] Length = 812 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/730 (47%), Positives = 489/730 (66%), Gaps = 33/730 (4%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ + V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+GM ++G ++K Y Sbjct: 4 QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+VMGKYHPHG+ AIYD + RM QD+SLR LI+GQGNFGSVDGD AA RYTE Sbjct: 64 KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +LDDL K+TV+F PN+D S +EP VL A+ PN+L+NG GIAVGMATNIP Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV+DG VA+I++P I+ L+++I GPDFPTGA I GR GIK+AY TGRGSI IR Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRA 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I + G R I+VTEIPY VNKA ++E IA+LVR+K++ I+DLRDESDR G R+VI Sbjct: 244 KAEITEEGG-RNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+GA+A+V+LNQLYR+T +++ F VN +AL +P +L L+ ++ R+EVV RR Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +++ L KA+ R H+L GL +A+ N+D+ V I+R S + + A+ M + Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYG---------- 412 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q++AIL++RL LTGL R I +E L I ++L+ Sbjct: 413 ----------------LSEEQSKAILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLA 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +L IIK ELL ++ + RRT I E ++ DED I E++VVT+S+ GY+KR P Sbjct: 457 SPQMVLDIIKNELLELRAKYGDGRRTIIKESDGEIVDEDLIPVENVVVTISNTGYIKRQP 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + YR QRRGG G G+ ++EDFV D+F STH +LFF++ G VY KV+ +P S Q Sbjct: 517 VDTYRTQRRGGMGIMGMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQ 576 Query: 613 ARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +RGKA++N+L+L E + ++P E DE Y++ T+ G +++ LS F I R+ Sbjct: 577 SRGKAIVNLLTLMPNESVNAMIPIKEFDEKH----YLIMCTREGTIKKTALSSFQNIRRT 632 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ LD DE++SV+ ++L+ T+ G+ RF S +R GR + GV GI L + Sbjct: 633 GIIAIGLDEGDELISVKLTNGGQEVLIATRNGKANRFSESEVRPM-GRQAGGVIGIRLTE 691 Query: 732 GDQVISMAIV 741 D+VI M +V Sbjct: 692 KDKVIGMEVV 701 >gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 811 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/888 (41%), Positives = 535/888 (60%), Gaps = 90/888 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I DE++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ K AR+ Sbjct: 4 QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG+ A+YDAL RMAQD+S+R L+ GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A + D+ K+TV+FRPNYD + QEP VL + PN+L+NG GIAVGMATNIP HNLGE Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 +VDG + +D+P+ + L +++GPDFPTG G+++AY TGRG++ IRG +E Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVE 243 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + + IV+ EIPY +NK++++EKIA L E+RI I DLRDESDR+G RVVI+LKRG Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKRG 303 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ++++NQLY+YT L++ F +NM+A+ G +P+ TL + + F+ R EV++RRT Y L Sbjct: 304 TIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHYDL 363 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL IA+ N+DEVV +IR S P A+ LMQR Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQR----------------- 406 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSEVQ +AIL++RL RLT L + + E L +I+ IL + L Sbjct: 407 ---------FSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVL 457 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVY 556 G+I+ EL +K+ TPRRT ++E L+ D ED I ED+V+T+S GY+KR PL Y Sbjct: 458 RGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVVITLSRRGYIKRTPLDSY 517 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + QRRGGKG +GV D DFV D + + H +L F++ G +++ KV ++P GS A+G Sbjct: 518 QQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGM 577 Query: 617 ALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + N+L + + E + TI F E++ Y +F+T+ G V+R+ S + + R+G Sbjct: 578 HINNLLPMEENEWVNTALTIREFTEEK------YFLFSTRKGMVKRSSASLYAKARRTGL 631 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V +++LTT+ G +RF +R GR++ GV+GI+L++ D Sbjct: 632 IAVGLREGDELIMVREVDDNCEVVLTTEKGIAIRFGCGDVRPM-GRSATGVKGIALSQDD 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V++ +V+G + E Sbjct: 691 SVVACV----------------------------------------TVQGGLESE----- 705 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 I+TVS G+GKRT +R+ +R GKG+ V+ + G ++ V NDQ+ Sbjct: 706 ------IMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTP--KTGEVLGAMTVVSNDQL 757 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 IL++ +IR+ V E+R RAT+GV + + + VV +R+ E E Sbjct: 758 ILLTSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDRVSEQE 805 >gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] Length = 852 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/890 (40%), Positives = 537/890 (60%), Gaps = 92/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + + M+ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 10 IHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQDWS R L++G GNFGSVDGD AA RYTE RL Sbjct: 70 RIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EP +L +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E +DG V +IDN D ++D L+EI++GPDFPTGA ILGR GI AY TGRG I + Sbjct: 190 RETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYRTGRGKIKV 249 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE +++I+VTE+PY VNKA ++EKIA+LV+EKRI I +LRDESDR G R+ Sbjct: 250 RAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDESDRSGMRI 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IE ++ +A+V+L QL+++T LQ F V M+AL +P+ L +L ++ +++VV Sbjct: 310 CIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYLNHQKDVVT 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA++RAH+L GL A+ +DEV+ IIR S N AR L++R Sbjct: 370 RRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKR---------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 S+ Q +AI+++RL LTGL R+ ++NE + L +I E I Sbjct: 420 ----------------FEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ LLG+I++E+L ++D+ RRT I + D+ DE I R+D ++T S LGY+KR Sbjct: 464 LADEKVLLGVIREEILLIRDKYGDDRRTSIEMDMEDLSDEALIPRKDAIITFSKLGYIKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +Q RGGKG G+ + DED + DLF+ STH ++FF++ G VY+ K + +P S Sbjct: 524 MTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLKGYEIPESS 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG +IN+L L E+IT I+P ED Y+V AT++G V++ ++ + + Sbjct: 584 RTARGVNIINLLQLQPEEKITAIIPLSEDGKQH---YLVMATRNGIVKKTGFDEYKNVRK 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ + DI L ++ GQC+RF + +R GR S+GV G++L Sbjct: 641 NGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE-TGRVSMGVIGMNLG 699 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ M I H++ D D I K M Sbjct: 700 DTDEVVGMQI--HSEGD-DLLIVSEKGM-------------------------------- 724 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 GKRT +F + +R GKG+R +++ + G ++ V + Sbjct: 725 ------------------GKRTPLDEFTVQHRGGKGLRCYKITE--KTGYVIGVKTIKPE 764 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIR 898 ++I+L++ +G +IR+ + I + R T GV + + D +V SV ++R Sbjct: 765 EEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDIKVASVAKVR 814 Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust. Identities = 63/264 (23%), Positives = 117/264 (44%), Gaps = 20/264 (7%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 ++ +K G ++R +F NR GK M + D I + + N I+ T G+ Sbjct: 512 IITFSKLGYIKRMTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRV 571 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAIVLHADADYDERICYMKHMSAQRR 763 R I + R + GV I+L + ++ I+ I L D + Y+ + A R Sbjct: 572 YRLKGYEIPE-SSRTARGVNIINLLQLQPEEKITAIIPLSEDG----KQHYL--VMATRN 624 Query: 764 LISGDT--EEITSLKNDSSVEGNISE-ERCQELKLKEQF--ILTVSEKGFGKRTSSYDFR 818 I T +E +++ + ++ E + E+K ++ I VS +G R D R Sbjct: 625 GIVKKTGFDEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVR 684 Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878 + R G+ ++ +E+ V + ++ D +++VS+KG R P++E + R K Sbjct: 685 ETGRVSMGVIGMNLGDTDEV---VGMQIHSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGK 741 Query: 879 GVVIFS-TAKDERVVSVERIRESE 901 G+ + T K V+ V+ I+ E Sbjct: 742 GLRCYKITEKTGYVIGVKTIKPEE 765 >gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 871 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/893 (39%), Positives = 536/893 (60%), Gaps = 83/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G +K Y KCA Sbjct: 12 IIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNTSDKPYKKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++++Y AL R+AQDW++R L++GQGNFGSVDGD AA RYTECRL Sbjct: 72 RVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++DDL KDTVD N+D + QEP V+ + PN+LVNGG GIAVGMATN+PTHNL Sbjct: 132 SKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAVGMATNMPTHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC A IDNP+ID + LM I+ PDFPTGA I G G+K+AY TGRG IV+R + Sbjct: 192 AEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIYGLQGVKDAYETGRGRIVLRAKAE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + ++IV++EIPY VNKA ++E IA+LV+E R+ I++ DES RQG R+V+++K Sbjct: 252 IE-SDESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQGMRIVVDVK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T LQS FSVN +AL +P TL +K FV R +V +RRTK+ Sbjct: 311 RDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRHDVTIRRTKF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVV+IIR S P A+R L +R Sbjct: 371 DLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKR--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q++AI+++RL++LTGL + + E L I IL Sbjct: 416 -----------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT I+ + ED + +V+TVSHLGY+KR PLS Sbjct: 465 ECKRVMKAELEEVKEKFGDERRTEIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSE 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + Q RGG G G RD+DF ++ + H ++LFF+ G + K + +P G ++G Sbjct: 525 FHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTSKG 584 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ + + + D N ++VFATK+G V++ L + + +G Sbjct: 585 RAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEAYSRPRTNGV 644 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ + DE++ V +N +++ + G+ V F + +R GR + GVRG+ L GD Sbjct: 645 NAITIAEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTM-GRTATGVRGMRLDGGD 703 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + IV+ N+ E Sbjct: 704 DAVVGMIVV----------------------------------NNPETE----------- 718 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++ VSE G+GKR+ D+R +NR GKG++ +++ ++ G LVA+ V D++ + Sbjct: 719 -----TVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIVDE 905 ++++ G IR+ V R+ RAT+GV + + +K V+ SV +++ S+ D+ Sbjct: 772 MIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSDKEDD 824 >gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 811 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/888 (40%), Positives = 550/888 (61%), Gaps = 96/888 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL ++ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLEDNNKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQ+ Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K D+I+ V E +E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ VS+ + G +V+V V++++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] Length = 893 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/904 (41%), Positives = 547/904 (60%), Gaps = 41/904 (4%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 5 ESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTE 124 Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL + +L D+ +TVDF N+DGS QEP+VL +R P +LVNG GIAVGMATNIP Sbjct: 125 CRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV++G +A+I NP+I LM+ I GPDFPTGA ILG+ I+ AY TGRGSI +R Sbjct: 185 PHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITMR 244 Query: 252 GVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE D+E I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR G Sbjct: 245 GVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRDG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKR A V+LN LY+ T LQ+ F NM+AL +P+ +L L F+ FR E Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRIE 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR + + TA++EL+ Sbjct: 365 TITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELID-------- 416 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 T LSEVQ+ AIL+++L RLT L I E L +I + Sbjct: 417 ------------------TYGLSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIADL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 LDIL+ R R+L II+ E+ +K + +PRRT I ++++ D I E ++ ++ GY Sbjct: 459 LDILAKRERILEIIQTEVAEIKLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S + AQ R +G++G M+++D V H SVLFFS G VY + +++P Sbjct: 519 IKRMPVSTFEAQSRATRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + S ARG ++ +L + E+IT+I+ E N Y++ T+ G +++ LS F Sbjct: 579 VSSRTARGTPIVQLLPIPIEEKITSIVSVTE---FSNEEYLIMLTRSGFIKKTVLSAFSN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRG 726 I +G IA+ L+ D++ V ++ I++ ++ G + F + ++ GR + GV+ Sbjct: 636 IRANGLIAISLEEGDQLRWVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPVGRATRGVKS 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L GD++I M I+ + I ++ ++ + +EG+ + Sbjct: 696 MKLRAGDELIGMDIL---PSSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDA 752 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 EE + + L ++ G+GKR FR+ R+GKG+ AT + A+ Sbjct: 753 EE-IPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAALRI 811 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 VN+ND++++V+ +G +IR VN I SR GV + +D+ +V+V + S +E+ Sbjct: 812 VNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSG--EES 869 Query: 907 ESTE 910 ES E Sbjct: 870 ESDE 873 >gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] Length = 809 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/891 (40%), Positives = 563/891 (63%), Gaps = 86/891 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E E GI V I+ +M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ + Sbjct: 1 MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K AR+ G+VMGKYHPHG+++IY+A R+AQD+++R L++GQGNFG++DGD Sbjct: 61 VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K A +L D+ KDTV+F PN+D +EP +L +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HN+ EV+DG V IDN DI + L E+I+GPDFPTGA+I+GR GI AY TGR Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R V+ I + REQI++TE+PYQVNK+A++ KIAEL ++K I I+ + D S++ Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+LK+ A+A+V+LN+LY+ T LQ + + +AL +P+ L +++ +V + Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+ RRT++ LNKA RAH++ GL IA+ N+D V++IIR S Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSS-----------------K 403 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D K++I+ D L+++Q++AIL++RL RLTGL R+ ++NE + L +IK Sbjct: 404 DDKEVIEKFDRE---------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL + L+ +IK ELL +KD+ RRT I D++ ED I ED+++T++ + Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQM 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P Y+ Q+RGG+G + + +++DFV +LF+ STH +LFF++ G VY+ K + Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G A++N+L+L++GE+IT+++ E + ++ Y++ T+ G +++ +F Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPNY---YLLMVTEKGLIKKTSNKEF 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G I +KL D+++SV + +I+L TK G+ +RF +R GRN++GV+ Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELR-DQGRNTMGVK 690 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D ++S IV GD GN Sbjct: 691 SMNLDEDDTIVSSDIV-------------------------GD--------------GN- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++LTVSE GFGK T ++R NR GKGI +S+ + G + A Sbjct: 711 -------------YLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 VN +D I+L++D G +IR+ +++I + SR T GV + + D +VV++ + Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMN-LNDSKVVAIAK 805 >gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] Length = 806 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/883 (40%), Positives = 548/883 (62%), Gaps = 89/883 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++K Sbjct: 3 ERKLNIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA RY Sbjct: 63 YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K + +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN+ Sbjct: 123 TELRMAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + + Sbjct: 183 APHNLGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIMGLEEVKNAYTTGRGKVKL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K++ I+DLRDESDR+G R+ Sbjct: 243 RAEARIEESKG-RYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIE KR A+ +++LN LY+YT +Q+ F +N+ +NG P+ TL ++ ++ +E VV Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LMQR Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMQRFG------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL +K + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ +D+ ++ +++F TK+G V++ L + I Sbjct: 573 SRTARGSNIINLIQIDADESVTQVLALDKDKE--DDQFIIFITKNGKVKKTSLDLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V D+ ISE Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G+GK+T ++ NR GKGIR ++K + G + + + Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 D+I+L+S K +IR+ I SR+T GV++ +T K E + Sbjct: 755 EDEILLISKKAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAI 797 Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 17/215 (7%) Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-AIVLHADADY---DER 751 I +T K G R A +V R GV + + GD + M A H D + + Sbjct: 503 ITITNK-GYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGK 560 Query: 752 ICYMKHMS---AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 + +K A R + + + D SV ++ ++ +E +QFI+ +++ G Sbjct: 561 VYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKE---DDQFIIFITKNGK 617 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 K+TS + N GI A K +E L+ V V N+ +I+V+ KG ++ V+ Sbjct: 618 VKKTSLDLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVD 672 Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 ++R SR GV + KD+ V+S + ++++E + Sbjct: 673 QLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707 >gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537] Length = 851 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/913 (40%), Positives = 562/913 (61%), Gaps = 95/913 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 ERNDMRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +LI+G GNFGSVDGD PAA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMAT+ Sbjct: 123 YTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATS 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ ++DNPD+ LM + GPDFPTGA+++G++GI+ AY TGRG++ Sbjct: 183 IPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVMGKSGIRRAYETGRGTVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T REQI+VTE+PY VNKA ++E+++ELVR+KRI I +RDESDR+G R Sbjct: 243 VRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A++ KP+ L IL A++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGKPKTLNLKEILVAYLEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S + A+ L++ Sbjct: 363 RRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SY+ LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 413 --------SYS--------LSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ +R+ II ELL ++ + RRT + G + ++EDED I ED++VT++ GY+ Sbjct: 457 ILAHSARVDKIIYNELLDIQQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + D+D + + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPTAEFKAQNRGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L+ + E+I T++ D+++ + Y+ F T+ G V+R + DF I Sbjct: 577 YGRHAKGIPVVNLLNFDNDEKIQTLISV-SDQTAASESYLFFVTQLGVVKRTAVKDFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+L+V E +I++ T G V F S +RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI A +L+ A+ Sbjct: 695 LRDDDIVIG-ADILNPKAN----------------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++E G+GK+T++ ++ I R GKGI+ +++ N G+LV + V+ Sbjct: 713 -----------VLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKN--GSLVGMTIVD 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----------- 897 ++ I+L +++G +IR + + RAT GV + K+ +V ++ ++ Sbjct: 760 GDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTD 819 Query: 898 RESEIVDEAESTE 910 +++ VDE +S + Sbjct: 820 SQAKAVDETQSEQ 832 >gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] Length = 828 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/892 (41%), Positives = 535/892 (59%), Gaps = 87/892 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI + ++NSYL YA++VI+GRA+PD+RDGLKPVHRR LF M +MGV +NK Y K ARI Sbjct: 10 ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKAYKKSARIV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GK+HPHG++A+YD + RMAQD+SLR L++GQGNFGSVDGD AA RYTE RL K Sbjct: 70 GDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL DL KDTVDF NYDG+ EP VL R P +LVNG GIAVGMATNIP HN+ E+ Sbjct: 130 SDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNIPPHNITEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + +ID P D + ++ + GPDFPT +I+G I+ AY TGRGSI IR IE+ Sbjct: 190 ISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKDIQTAYRTGRGSITIRARVLIEE 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 T + I+V EIPY VNKA+M+EKIA+LV+EK+I I DLRDESD+ G RVVIELK+G Sbjct: 250 TKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRVVIELKKGE 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + DV+LN+LY++T LQ+ F NMVA+ KP+ +L IL+ F+ R VV RRT++LL Sbjct: 310 NVDVVLNRLYKFTQLQTSFGFNMVAIVDGKPQTLSLREILEEFLKHRVTVVTRRTQFLLR 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA R H+L GL AV N+DEV++ I+ S + A+ L + Sbjct: 370 KAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQ------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E+Q ++ILE+RL +LTGL + ++ E ++ +I+ IL +RS ++ Sbjct: 412 --------FGFTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMM 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +IK EL V D+ RRT I GL + EDED I + VVT++H GY+K LS Y A Sbjct: 464 SVIKDELQDVLDKYGDDRRTEIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVA 523 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG++G +DEDFV L + + HT ++FF++ G V+ KV+ LP A+G+ + Sbjct: 524 QKRGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQRDAKGRHI 583 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L+L E + +++ P + + Y+ FATK G +++ L +F + RSG +A+KL Sbjct: 584 SNLLTLEPEEFVASVLALP---AETDGKYLFFATKSGTIKKTSLEEF-KSGRSGIVAIKL 639 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DEIL+ + T E+ ++L+TK G+ ++F + R GR++ GVRGI+ Sbjct: 640 RDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPM-GRSTSGVRGIT---------- 688 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 + A+ L+S E+ Sbjct: 689 -------------------LEARDELMS------------------------MEVLTGAP 705 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +IL+V+ G+GKRT ++R+ R GKG++ VS + G +V V DND +++++ Sbjct: 706 YILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSP--KTGFVVGAKQVTDNDDVMIITR 763 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR V I R T GV + T D+ +++ I+E I +++++ E Sbjct: 764 SAKTIRTEVQGISKMGRDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNE 814 >gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52] Length = 827 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/879 (41%), Positives = 545/879 (62%), Gaps = 91/879 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E ++ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D + V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L VY Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGSNR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI Sbjct: 636 SCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+V+ D + Sbjct: 695 LNENDFVVG-AVVISDDGNK---------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKGI +++ + G LV V V+ Sbjct: 714 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVGVISVD 760 Query: 849 D-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 D N +++++ +IRV + +IR R GV + +TA Sbjct: 761 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601 >gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] Length = 882 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/888 (41%), Positives = 539/888 (60%), Gaps = 45/888 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+ ++ + Sbjct: 5 ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSVD DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124 Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL + +L D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E+VDG VA+I NP+I LM I GPDFPTGA ILGR+GI+ AY TGRGSI +R Sbjct: 185 PHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITMR 244 Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE + DRE I++TE+PYQ NKAA++EKIAE+V EKR+ I+D+RDESDR+G Sbjct: 245 GVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDREG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+EL+R A V+LN LY+ T LQ+ F NM+AL KPE TL L F+ FR + Sbjct: 305 MRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRID 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y KA +R H+L GL IA+ NLD ++ +IR + + TA++EL++R Sbjct: 365 TIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE Q AIL+++L RLT L I E L +I + Sbjct: 418 -------------------FGLSEPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R R+L I++QE +K TPRRT I ++ED D I E ++ ++ GY Sbjct: 459 NDILNRRERILEIVEQEAQEIKQRHGTPRRTEIELEESELEDTDLIANEKAIILLTEQGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ + AQ R +G+SG M+++D V H S++FF+ G Y K +++P Sbjct: 519 IKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQIP 578 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 IGS ARG ++ +L + + E+IT+++ E N+ Y+V TK G +++ LS F Sbjct: 579 IGSRIARGVPIVQMLPIPRDEKITSLVAVGE---FSNDEYLVMLTKGGYIKKTALSAFNN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 I +G IA+ L+ DE+ V + ++ +++ ++LG + F ++ GR + GV+ Sbjct: 636 IRSNGIIAISLNEGDELRWVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPLGRATRGVKA 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + L D++I M I+ + + + + I + +D+ E Sbjct: 696 MKLKPDDELIGMDILPSF------IVASIPKLGGEETEIEEEENTTVEEVDDTESE---- 745 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E E++ IL ++ +G+GKR FR+ NR+GKGI AT +VA+ Sbjct: 746 EIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVALQV 805 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V++ D+++L++ +G +IR ++ I SR GV + K++ + +V Sbjct: 806 VHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAV 853 >gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929] gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929] Length = 850 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/887 (41%), Positives = 550/887 (62%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++GV +K Y K A Sbjct: 15 VTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHELGVTPDKPYKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+Y+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE RL Sbjct: 75 RIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDT+DF+PNYDG+ +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 135 SKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++ NPD LME + GPDFPTG V++G++GI+ AY TG+G+I++R Sbjct: 195 SEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYETGKGTIIVRAKVE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +G +++I+ TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR+G RVVI+++ Sbjct: 255 IEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDVR 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ FS NM+A+ P+ +L IL ++ + EV+ RRTKY Sbjct: 315 RDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLEHQVEVIQRRTKY 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA+ RAH+L GL IA+ ++DE+++IIR S + A+ +L++ Sbjct: 375 ELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE---------------- 418 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L + Q +AIL++RL RLTGL R+ I E N L +I+E IL+SR Sbjct: 419 ----------GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILASRE 468 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II QELL ++++ PRRT ++ G +L +EDED I ED++++++H GY+KR+P S Sbjct: 469 RVNEIIYQELLEIQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISLTHNGYIKRLPTS 528 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + ++DFV L STH +LFF+ G VY+ K + +P A+ Sbjct: 529 EFKAQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAK 588 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L++ E+I ++ D+++ + F T G V+R +SDF I +G Sbjct: 589 GIPVINLLNIGNNEKIQAVINV-SDKNNDIEKDLFFVTLMGTVKRTPVSDFANIRSNGLK 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++ +V +++ +I++ T G V F + +R GR++ GVRG+ L + D Sbjct: 648 AINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSM-GRSATGVRGVRLRENDY 706 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ I LK DS V Sbjct: 707 VVGSDI----------------------------------LKPDSEV------------- 719 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 FI +SE G+GKRT + ++ I R GKGI+ ++++ N G L + VN + I+ Sbjct: 720 ----FI--ISENGYGKRTPAAEYPIKGRGGKGIKTANITEKN--GPLAGLTTVNGEEDIM 771 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 L++D+G +IR V ++ RAT GV + +V ++ ++ + + Sbjct: 772 LITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQD 818 Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust. Identities = 49/236 (20%), Positives = 107/236 (45%), Gaps = 22/236 (9%) Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 ++ ++++ D++ + +D+ V+ +G VKR P+S + R G + ++D+D V+++ Sbjct: 604 IQAVINVSDKNNDIEKDLFF-VTLMGTVKRTPVSDFANIR--SNGLKAINLKDDDQVSNV 660 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER---ITTIMPFP 637 I S +++ + G+ + ++ G++ + + E + + + P Sbjct: 661 LIASEDQNIIIGTHRGYAVSFNAADV-----RSMGRSATGVRGVRLRENDYVVGSDILKP 715 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEN 694 + E V +++G +R +++ R GK A + + + T E Sbjct: 716 DSE-------VFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKNGPLAGLTTVNGEE 768 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 DI+L T G +RF + + GR ++GV I + G +V +MA V D D+ Sbjct: 769 DIMLITDQGVMIRFSVEDVSQ-TGRATLGVHLIRMTDGAKVATMAKVEKQDDSEDD 823 >gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571] gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571] Length = 825 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/910 (41%), Positives = 550/910 (60%), Gaps = 99/910 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 +S E+ K + VSI +EM++SYL YA++VI+GRAIPD+RDGLKPVHRR L+ M +MG Sbjct: 6 NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNY 65 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K + K ARI GEVMGKYHPHG+++IYD L +MAQ +S R +L+EGQGNFGS+DGD A Sbjct: 66 HDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAA 125 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE RL + LL+D+ K+TVDF PN+D S QEP+VL A+ PN+LVNG GIAVGM Sbjct: 126 AMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGM 185 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 AT +P HN+GEV A+ID+P+I LME + GPDFPTG VILGR+GI +AY TGRG Sbjct: 186 ATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASAYTTGRG 245 Query: 247 SIVIRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 I +RGV+ IE G ++ +I+++EIPYQVNKA ++E+IA+LVR+K+I I+D+RDESD+ Sbjct: 246 RIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESDK 305 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVVIELK+ V+LNQLY++T L+S F V +A+ +P+ TL I++ F+ R Sbjct: 306 DGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQEFLKHR 365 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V+ RRT + L KA DR H+L GL +A+ N+D V+ IR S E A ++L++ Sbjct: 366 KSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIE------ 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L E+Q AIL+++L RL L + I +E + L E++ Sbjct: 420 --------------------NFGLDEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVE 459 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 I+S + IK+E L + ++ RRT+I + D++ ED I + ++V+++ Sbjct: 460 RLKLIISDEGHIFAEIKKETLEISEKYSDERRTKISHDVSDLDKEDLIENKQVLVSLTSH 519 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 Y+K +PL Y+ Q RGG+G G+ +DEDFV +F+ STH +L F+S G VY KV+ Sbjct: 520 NYIKSMPLDTYKGQHRGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYD 579 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKL 662 +P + Q+RGKA++N+L L E++T ++P F EDE + +FAT +G V + Sbjct: 580 IPEATRQSRGKAIVNLLELGDEEKVTAVIPVSEFKEDE------FFLFATLNGMVVKIPQ 633 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 +F + +SG A+ L DE++ V +I+LTT++GQ +RF I +I RN++ Sbjct: 634 VEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIESIS-LRHRNAL 692 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+GI L D++ +++T ++ D Sbjct: 693 GVKGIKLRYMDEL----------------------------------QDVTPVEKD---- 714 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR--ATDVSKINEIGA 840 +LT++EKG+GKRT +FR R+ G+R TDVS G Sbjct: 715 ----------------HLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTDVS-----GG 753 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +V+ V+D++ IIL+S G +IR V+EI I R T+GV I + + VV I +S Sbjct: 754 IVSSKAVSDDEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLDEGDSVVGF-TILDS 812 Query: 901 EIVDEAESTE 910 + DEA E Sbjct: 813 DEGDEAGPDE 822 >gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002] gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002] Length = 841 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/880 (42%), Positives = 534/880 (60%), Gaps = 71/880 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143 YHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DP AA RYTECRLQ A + LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ +TVDF N+DGS QEPVVL +R P +LVNG GIAVGMATNIP HNLGE++DG Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE---KTS 260 A+I NP+I + LM+ I PDFPTGA ILGR+GIK+AY TGRGSI +RGV+ IE + Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 ++E I+VT++PYQ NKAA++E+IA++V +K+I I+D+RDESDRQG R+VIELKR A Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LN LY++T LQ+ F NM+AL +P+ L L+ F+ FR EV+ RRT+Y L KA Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++R H+L GL IA+ NLD V+ +IR + + AR+ LM +N Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMD-GYN----------------- 402 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LS+ Q AIL+++L RLT L D I E L ++I + DIL+ R R+ I Sbjct: 403 --------LSQAQADAILQMQLRRLTALEADKIEAEHQDLLLKITDLEDILARRERVYAI 454 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I+ EL +K + RRT +V D++D D I E + ++ GY+KR+P++ + AQ Sbjct: 455 IEAELTEIKTIHQSDRRTELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQN 514 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 R +G++ M+++D V H VLFF+ G VY +++P S ARG I Sbjct: 515 RATRGKAATKMKEDDGVDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQ 574 Query: 621 ILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 +L + + E+IT ++ F EDE Y+V T++G +++ LS F +I +G IA+ Sbjct: 575 LLPIPKDEKITAMLAVSEFTEDE------YLVMLTQNGYIKKTALSAFAKIRSNGLIAIS 628 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL-AKGDQV 735 L+ DE+ V QE+ I++ + G + F ++ GR++ GVR + L + D++ Sbjct: 629 LEDGDELRWVRLARQEDSIIVASSEGMAIHFQADHNQLRPLGRSTRGVRAMKLKSDDDKL 688 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +SM IV S+Q + ++ V N+ + Sbjct: 689 VSMDIV-----------------SSQITAAIAAADTAEDEDDNEEVTENVDQ-------- 723 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDNDQII 854 +++ V+ KGFGKR FR+ NR+G G+RA SK + + +L V P D+++ Sbjct: 724 -GPWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKFKSKADRLASLRIVNP---EDELM 779 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 LV+ +G +IR V I + SR+ GV + D+ +V+V Sbjct: 780 LVTGRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAV 819 >gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] Length = 811 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/888 (40%), Positives = 549/888 (61%), Gaps = 96/888 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKIDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQ+ Sbjct: 463 MKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQK 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG S + ++DF + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K D+I+ V E +E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KTKEDDDIIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 TVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V++++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVSEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] Length = 862 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/885 (42%), Positives = 538/885 (60%), Gaps = 60/885 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I NP++ L++II GPDFPTG ILGR+GI +AY TGRGSI +RGV+ Sbjct: 188 LGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE I++T++PYQ NKAA++E+IA+LV EKRI I+D+RDESDR G RV Sbjct: 248 QIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRDGMRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRIETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + +A+ EL+Q Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L + I E L ++I + DI Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+ II++EL +K TPRRT IV ++ D D I E ++ ++ GY+KR Sbjct: 462 LARRERIEAIIEEELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + AQ+R +G++ ++D+D V H VLFFS G VY +++P S Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPSSS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+I+ E ++++V T G +++ LS F I Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FTEDVFLVMLTHKGYIKKTALSAFSNIRT 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V +E+ I+L T+ G + F ++ GR + GV+ + L Sbjct: 639 NGLIAISLGEGDQLRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPLGRATRGVKAMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD++ISM + + AQ T I D V N +EE Sbjct: 699 KKGDELISMDV-----------------LPAQV------TAGIADAAEDEDVLDNETEEL 735 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E +IL ++ G+GKR FR+ R+G G+RA ++ L ++ VN Sbjct: 736 SEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKFK--SKTDCLASLHVVNA 793 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D++++VS++G +IR V+ I + SRA GV + D+ + +V Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAAV 838 >gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1] gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1] Length = 855 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/903 (40%), Positives = 537/903 (59%), Gaps = 95/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS R +L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG GIAVGMATNIP HNL Sbjct: 129 SRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E++ V +IDN D ++ LMEI++GPDFPTGA ILG+ GI+ AY TGRG I + Sbjct: 189 RELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+VTEIPY VNKA ++EKIAELV++KR+ I DLRDES+R+G R+ Sbjct: 249 RAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+++LNQL ++T LQ F VNM+AL +P+ L +L ++ +++VV Sbjct: 309 CIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL A+ +DEV+RIIR S A+ LM+R Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL LTGL R+ + NE L I E I Sbjct: 419 ----------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++LL +IK+E+ + D+ RRT+I DM ED I ED+VV +++LGY+KR Sbjct: 463 LADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ DED++ +L + +TH ++FF++ G VY+ K + +P Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A++N++ L GE+IT +P E DE ++ ATK+G V+R + ++ + Sbjct: 583 RTARGTAIVNLIQLQPGEKITATVPMKEFDEDK----FLFMATKNGMVKRTPMKEYENVR 638 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++ V+ DI L TK G C+RF + +R+ GR S+GV G+ Sbjct: 639 KNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMKF 697 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D++I M + S+ Sbjct: 698 DSDDEIIGMQMA--------------------------------------------SQGE 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 C +L VSE G GKRT +F R GKG+R +++ + G LV V++ Sbjct: 714 C---------LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITE--KTGYLVGAKLVDE 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVDEAE 907 QI+L++++G +I++ VN I I R T GV + + VV S+ ++RES DE E Sbjct: 763 GRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIAKVRESS-QDEDE 821 Query: 908 STE 910 E Sbjct: 822 ELE 824 >gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] Length = 853 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/907 (40%), Positives = 541/907 (59%), Gaps = 97/907 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI+ RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN + ++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I + Sbjct: 189 REVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R VS IE + + +I+VTE+PY VNKA ++EKIAELV++K++ I DLRDESDR G R+ Sbjct: 249 RAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFR 365 IEL+R A+A+V+LNQL ++T LQ F V M+AL +P+ ++ +L ++ + Sbjct: 309 CIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYLDHQ 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM R Sbjct: 369 KEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSR----- 423 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS+VQ++AI+++RL LTGL R+ + NE L I Sbjct: 424 ---------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIA 462 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 E IL+ +LLG+IK+E+ + + RRT I DM ED I E +V ++ L Sbjct: 463 ELKSILADEKKLLGVIKEEISIISAKYGDDRRTSIGFDEFDMSMEDLIPDESTIVAMTKL 522 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+ + ++ Q RGG+G G+ D+D++ DL + +TH ++FF++ G VY+ K + Sbjct: 523 GYIKRMSVDNFKNQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYM 582 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P GS +RG A++N+L + GE IT I+P E + ++ ++ AT++G V++ + ++ Sbjct: 583 IPEGSRTSRGTAIVNLLQMLPGESITAIIPMKEYD---DDKFLFMATRNGMVKKTPMMEY 639 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + ++G A+ L DE++ V+ DI L TK GQC+RF +R+ GR S+GV Sbjct: 640 ANVRKNGLQAIVLRENDELIEVKATDDTKDIFLVTKKGQCIRFHEKDVRI-TGRVSMGVI 698 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L + DQV+ M Sbjct: 699 GMKLNEDDQVVGM----------------------------------------------- 711 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++ Q KL L VS G GKRT +F R GKG+ +++ + G +V Sbjct: 712 -QKESQGPKL-----LIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITE--KTGDIVGAK 763 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIV 903 V D+ ++L++ +G +IR+ VN+I + R T GV + + +D V S+ ++R+ Sbjct: 764 LVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDITVASIAKVRDDGSK 823 Query: 904 DEAESTE 910 + E E Sbjct: 824 SDGEGLE 830 >gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] Length = 861 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/883 (41%), Positives = 532/883 (60%), Gaps = 85/883 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ S + M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 9 EETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELGVTPDKPHK 68 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R LI+G GNFGSVDGD AA RYTE Sbjct: 69 KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDGAAAMRYTE 128 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ KDT++FR NYD + +EP VL AR PN+LVNG GIAVGMATNIP Sbjct: 129 ARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAVGMATNIPP 188 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+ ++ NPD+ LME + GPDFPTG ++LG++GI+ AY TGRGSI +RG Sbjct: 189 HNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRAYETGRGSITVRG 248 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ +E+I++TE+PY VNKA ++E+IA+L EK+I I L DESDR G RVVI Sbjct: 249 RVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDESDRVGMRVVI 308 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E++R SA V+LN LY+ T LQS F NM+A+ +P+ +L IL+ ++ +EEVV RR Sbjct: 309 EVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRHYLDHQEEVVRRR 368 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + + KA DRAH+L GL IA+ ++D +V I+R S + + A+ M Sbjct: 369 SLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYG---------- 418 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LS+ Q +AIL++R+ RLTGL R+ I E N L I+ +L+ Sbjct: 419 ----------------LSDKQAQAILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLA 462 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S II+QELL ++ D PRRT ++ G L +EDED I +ED+V+T++ GY+KR+ Sbjct: 463 SEELRYEIIEQELLEIQQRFDNPRRTELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRL 522 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + ++AQRRGG+G G+ + D+D+V ++ STH S+LFF++ G VY+ K + +P S Sbjct: 523 ANTEFKAQRRGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSR 582 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+G +IN+L+++ E+I I+ PE + + Y+ F T G V+R +LS+F I + Sbjct: 583 TAKGLPVINLLNIDSAEKIQAIISVPESDETER--YLFFTTLRGTVKRVRLSEFKNIRTN 640 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A++L DE++ V + + I+L T G V F +R GR + GVRG+SL Sbjct: 641 GLRAIQLREDDELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAM-GRTASGVRGVSLRD 699 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD VI M I ++ D E Sbjct: 700 GDYVIGMDI------------------------LTPDNE--------------------- 714 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L VSEKG+GKRT++ ++ + R GKG+R +++ N G LV + V ++ Sbjct: 715 --------VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKN--GPLVCLRTVTGDE 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++++KG +IR ++ R GV + +D V S+ Sbjct: 765 DLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSL 807 >gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424] gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424] Length = 853 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/899 (41%), Positives = 544/899 (60%), Gaps = 60/899 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+ ++ + KCA Sbjct: 8 IIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LIEG GNFGS+D DPPAA RYTE RL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTESRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ +TVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+I NP+I LM+ I GPDFPTGA ILGR+GIK+AY GRGSI +RGV+ Sbjct: 188 LGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + +RE I+VTE+PYQ NKAA++EKIAELV +KRI IAD+RDESDR G R+ Sbjct: 248 QIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T +Q+ F NM+AL +P+ TL L+ F+ FR EV+ Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRVEVIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA +R HVL GL +A+ANLD ++++IR + + TA+REL+ + Sbjct: 368 RRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQ---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L + I+ E L +I + DI Sbjct: 418 ----------------FGLSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ II++EL +K TPRRT I++ ++ D D I E V+ ++ GY+KR Sbjct: 462 LERRERVDHIIEEELNQLKTTHATPRRTEIIQEDGELIDLDLIANEQAVILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + Q R +G+S ++++D V H +LFFS G VY +++P S Sbjct: 522 MPVSTFGQQSRATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+++ E + Y++ T+ G +++ LS + I Sbjct: 582 RTARGVPIVQMLPIPKNEKITSMLAVSE---FSEDCYLIMLTRQGYIKKTVLSAYSNIRA 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISL 729 +G IA+ L D++ V +E+ I++ T+ G + F + ++ GR + GV+ + L Sbjct: 639 NGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D++IS+ I L S I + +++ E +EE Sbjct: 699 KGTDEIISVDI-----------------------LPSQVVANIATSEDEVEDETLETEEI 735 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++L ++ G+GKR FR+ R+G G++A N+ LVA+ VN Sbjct: 736 ISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRFK--NDHDQLVAIHVVNQ 793 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D++++V+++G +IR V+ I SR GV + +D+ + +V + S ++ ES Sbjct: 794 DDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPPSAEGEDPES 852 >gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] Length = 840 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/902 (40%), Positives = 547/902 (60%), Gaps = 92/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+GK+TVDF PN+D + +EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN + +++ ++EII+GPDFPTGA ILG+ GI+ AY TGRG I + Sbjct: 189 REVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+VTE+PY VNKA ++EK+AEL +EK+I I DLRDESDR G R+ Sbjct: 249 RAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R +A+VILNQL ++T LQ F V M+AL +P L+ +LK ++ ++EVV Sbjct: 309 VIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLYLEHQKEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ ELM+R Sbjct: 369 RRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL LTGL R+ + NE L +I+E I Sbjct: 421 ------------------LSDAQAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+I++E++ + D+ RRT I DM ED I E+ +V ++ LGY+KR Sbjct: 463 LADEKKLLGVIREEIMLISDKYGDDRRTSIGFDEFDMSMEDLIPDENTIVAMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ D+D++ DL + + H ++FF++ G VY+ K + +P GS Sbjct: 523 MSVDNFKSQNRGGKGIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L GE IT I+P E + ++ ++ ATK+G V++ + ++ + + Sbjct: 583 RTARGTAIINLLQLLPGESITAIIPMKEYD---DDKFLFMATKNGMVKKTPMMEYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE++ V+ DI L TK+GQC+RF + +RV GR S+GV G+ L Sbjct: 640 NGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRV-TGRVSMGVIGMKLN 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+ M + ++ LI +SE Sbjct: 699 DDDEVVGMQM----------------DTQGEKLLI-------------------VSENGM 723 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + ++F +K GK Y +I+ ++GK +V V+D+ Sbjct: 724 GKRTPIDEF---TPQKRGGKGVLCY--KITEKTGK---------------IVGAKLVHDD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRESEIVDEAES 908 I++++++G +IR+ V +I + R T GV + + + D RV S+ ++R+ E E Sbjct: 764 HDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDDGSKSEGEG 823 Query: 909 TE 910 E Sbjct: 824 LE 825 >gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] Length = 842 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/883 (42%), Positives = 553/883 (62%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V++NP++ LME+I GPDFPTGA+++GR+GI AY TGRGSIV+R Sbjct: 182 PHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVMGRSGIHRAYDTGRGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L ++KRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ ++ ++EV+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYILHQKEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELMQR Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E ++L I + DIL Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDALIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 S R+ II +E+ VK + RRT ++ G +L +EDED I ED+++T+S++GY+KR Sbjct: 456 SKPERVQTIIIEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE I TI+ + E + + Y F TK G V+R S+F I + Sbjct: 576 RTAKGLPIVNLLKLDDGETIQTIINARKVEVA--DKYFFFTTKGGVVKRTSASEFNNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V DI++ T+ G VRF S+IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEDDELINVLLTDGTEDIIIGTRSGYSVRFNESSIRNM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ A R I+ D E Sbjct: 693 DEDMVV----------------------GASR--ITDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++E G+GKRT++ ++ R GKGI+ +++ N G L + V+ + Sbjct: 709 ---------VLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKN--GPLAGLTTVSGD 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + ++++++KG +IR ++ + RAT GV + +D ++V+ Sbjct: 758 EDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIVT 800 >gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803] gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803] Length = 860 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/871 (42%), Positives = 530/871 (60%), Gaps = 58/871 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 LIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA RYTE RL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + + LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 RPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEV+DG +A+I NP+I LM+II GPDFPTGA ILGR+GI+ AY TGRGSI +RGV+ Sbjct: 188 LGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSITMRGVA 247 Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE DR+ I+VTE+PYQ NKAA++E+IA+LV +K+I IAD+RDESDR G R+ Sbjct: 248 SIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A A V+LN LY+ T +QS F N++AL PE T+ L F FR E + Sbjct: 308 VIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEFRIETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+ NLD V+R+IR + + +A+ EL++ Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVE----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L D I E + L +I + DI Sbjct: 417 ---------------GFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+ II++EL +K TPRRT IV+ ++ D D I + ++ ++ GY+KR Sbjct: 462 LARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P S + Q R +G++ ++D+D V H VLFFS G VY +++PI S Sbjct: 522 MPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIAS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+++ E + ++ Y + TK G +++ LS F I Sbjct: 582 RTARGVPIVQMLPIPKDEKITSLVSVSEFD---DDTYFIMLTKQGYIKKTALSAFSNIRA 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V E+ +++ ++ G + F + A GR + GV+ + L Sbjct: 639 NGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD +ISM I+ + I L GDT+ I Sbjct: 699 RSGDALISMDIL---PSQVVANIAVGSEDEPDEDL-GGDTDAI----------------- 737 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E ++L V+ KGFGKR FR+ +R+G G++A ++ LVA+ VN Sbjct: 738 LEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDD--QLVALHVVNA 795 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 +D++++V+++G +IR VN+I SR+ GV Sbjct: 796 DDELMIVTNRGIIIRQSVNDISPQSRSATGV 826 >gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] Length = 862 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/894 (38%), Positives = 544/894 (60%), Gaps = 87/894 (9%) Query: 8 SDEEEEKG----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQ 62 ++EE+ G I ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 17 TEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRILYDMSAE 76 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + +K K ARI G+V+GK+HPHG++++Y+A+ RMAQDWS+R L++GQGNFGS+DG Sbjct: 77 LNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGNFGSMDG 136 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE R+QK ++ D+ KDT+D+ N+D + EP VL + P +LVNG GI Sbjct: 137 DSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLVNGASGI 196 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HNLGEV+D C A +DNP+I + L++ ++GPDFPTG +I G G++ A Sbjct: 197 AVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIYGYEGVREALL 256 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG +V+R + IE T+ RE IV+TEIPY VNKA M++KIA+L+ EK+I I+ + DE Sbjct: 257 TGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGISYINDE 316 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+++ LK A A V+LN LY+ T LQ+ F+VN +AL +P L+ +++ FV Sbjct: 317 SDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNGRPMMLNLLDLVQHFV 376 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R +V+VRRT++ L KA R H+++GL IA N+DE++ IIR + NP+ A++ +M+R Sbjct: 377 EHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQAMMER-- 434 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LS+ Q AI+E+RL LTGL D + E N L Sbjct: 435 ------------------------FSLSDAQASAIIEMRLRALTGLEHDKLVAERNELEA 470 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I D+L SR + I+K ELL VK + RR+ IV + ED ++MV+T+ Sbjct: 471 QIAYFNDVLGSRELQMKIVKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADDEMVITI 530 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SHLGY+KR PL+ YR Q RGG G G RDEDF+ +++ + H ++LFF+ G Y K Sbjct: 531 SHLGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLK 590 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660 V+ +P G+ ++G+A+ N++ + +++ + +D NN Y++ TK G +++ Sbjct: 591 VYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKDGTIKKT 650 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KL + + ++G A+ + D+++ + + ++++ + G+ +RF + +R GR Sbjct: 651 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPI-GRV 709 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 GVRGISL +GD+V+ M IC Sbjct: 710 GAGVRGISLDEGDEVVGM-------------IC--------------------------- 729 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +E N S Q +L +SE G+GKRT ++RI+NR GKG++ ++++ + G Sbjct: 730 IEPNSS-----------QDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITE--KTGK 776 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L+++ V D + +++++ G IR V++IR+A RAT+GV I + + + + SV Sbjct: 777 LISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASV 830 Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust. Identities = 27/114 (23%), Positives = 61/114 (53%), Gaps = 9/114 (7%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++ ++T+S G+ KRT ++R NR G G + S + + ++ ++ ++ Sbjct: 524 DEMVITISHLGYIKRTPLAEYRTQNRGGVGAKG---SATRDEDFIEHIYMATMHNTMLFF 580 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERV---VSVERIRESEIVD 904 ++KG + V EI +R++KG I + + D++V ++V+R+ ++E V+ Sbjct: 581 TEKGRCYWLKVYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVN 634 >gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695] gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695] Length = 827 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/880 (41%), Positives = 545/880 (61%), Gaps = 93/880 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F + N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634 Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 RS I A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV GI Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREI-GRTTRGVIGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ A+V+ D + Sbjct: 694 KLNENDFVVG-AVVISDDGNK--------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V Sbjct: 714 ------------LLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQ--KTGNLVGVISV 759 Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 +D N +++++ +IRV + +IR R GV + +TA Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 813 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/894 (41%), Positives = 560/894 (62%), Gaps = 92/894 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A ++NP+I + L +II+GPDFPTGA ILG+ GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR A+A+++LN LY+ T L++ F + +AL P+ L ++K +V +++VV Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S++ IK Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIR--------------SSYDNDQIKK 408 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + L++ Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 409 IFN------------EKFGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L+ +I++E+L +K++ RRT+IV EG D+E+ I +ED++++++H GY Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY K + +P Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 S Q+RG+A+IN++SL+ E+IT IM +E S +VF T++G +++ F Sbjct: 575 EASRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ----LVFQTENGKIKKTDAELFT 630 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I R+G IA+ L++ D ++S+ + DI++TTK G ++F S IR GRN+ GVR Sbjct: 631 NIQRNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRA 689 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D+V+SM NI Sbjct: 690 IRLGEDDKVVSM---------------------------------------------NIV 704 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+ E +++ V+ GFGK+TS +F NR GKG+R +++ + +VA P Sbjct: 705 ED--------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLP 754 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRE 899 N +D I++VS KG +IR+ +I R T GV + + E +VSV + E Sbjct: 755 ANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDFIVSVTKYYE 808 >gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] Length = 812 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/881 (41%), Positives = 547/881 (62%), Gaps = 96/881 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI AY TGRG I +RG IE+ Sbjct: 189 GILALIDNKDIEILELMNFIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGKVDIEEQK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE+K+G Sbjct: 249 NGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R EV+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFEVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYG------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I NE + IKE ++L+ S++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ + RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLELKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G S + ++D+ + ST +++ F+ G VY + + +P S Q+RG+ + N Sbjct: 523 RGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLIGN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E +VF TK+G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFVPEKE-------IVFITKNGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K+ D+I+ V E T+E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KIKEDDDIIFVGLIEDVTKE-EILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G +IR ++EI RAT+GV I A +E+V ++ Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAI 800 >gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 847 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/886 (41%), Positives = 537/886 (60%), Gaps = 71/886 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +MG +WNK Y K ARI G V+GK Sbjct: 17 LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++A+YDA+ RMAQ++SLR LI+GQGNFGSVDGD AA RYTE RL K +H +L Sbjct: 77 YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL KDTV++ NYD + P V+ + PN+L+NG GIAVGMATNIP HN+GE+++ C+A Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-IEKTSGDR 263 +DN +I + LM+ + GPDFPT +I G GI++AY+TGRG I IR S I R Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTKR 256 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 E I++ EIPYQVNK ++EKIA+LV+EK+I I+ LRDESDR G R+V+E+KR +++ Sbjct: 257 ESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEIV 316 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY T LQ F +NMVAL +P+ +L IL F+ R ++ R+T + L K R Sbjct: 317 LNNLYSMTQLQISFGINMVALCYGQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIYYR 376 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI------KDLIDLIDDS 437 ++L IA+ N+D V+ +I+ S + E A+ +L+ W+ ++I K LI Sbjct: 377 LNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFSKK 436 Query: 438 SYTIGSDGT----MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 I S+ ++S+ Q +AIL+LRL +L L + E L + + IL Sbjct: 437 Q-KINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILKY 495 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L IK+ELL +K E + RRT+I++ +++ ED I ++D++VT+SH GYVK PL Sbjct: 496 PDELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQPL 555 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y AQ RGGKG+S ++++DF+ + +TH S+L FSS G VY K+++LP S + Sbjct: 556 KDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRGS 615 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 GK +IN+L L E IT I+PF + E LYV AT G V++ L +F + SG Sbjct: 616 IGKPIINLLPLESKEYITAILPFRKYEKK---LYVFMATASGIVKKTALHEFSRPRSSGI 672 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L+S D+++ + + +L ++ G+ VRFP + +R GR + GV+GISL GD Sbjct: 673 IAVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNM-GRAASGVKGISLIPGD 731 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S+ I KN+S Sbjct: 732 RVVSLIIP----------------------------------KNNSP------------- 744 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILTV++ G+GKRT ++ +R+ +G+ + VSK N G +V VND DQI Sbjct: 745 ------ILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRN--GKVVGAVQVNDYDQI 796 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++D GTL+R+ V+E+ I R T GV + + + VV ++R+ E Sbjct: 797 MIITDSGTLVRIRVSEVSIVGRNTHGVRLIRISNNNNVVGLQRVVE 842 >gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] Length = 806 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/883 (40%), Positives = 546/883 (61%), Gaps = 89/883 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++K Sbjct: 3 ERKINIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA RY Sbjct: 63 YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN+ Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + + Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R+ Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIE KR A+ +++LN LY+YT +Q+ F +N+ +NG P+ TL ++ ++ +E VV Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V D+ ISE Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G+GK+T ++ NR GKGIR ++K + G + + + Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 D+I+L+S + +IR+ I SR T GV++ +T K E + Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAI 797 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +QFI+ +++KG K+TS + N GI A K +E L+ V V N+++ Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I+V+ KG ++ V+++R SR GV + KD+ V+S + ++++E + Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707 >gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] Length = 832 Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/901 (39%), Positives = 540/901 (59%), Gaps = 91/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M ++ +K + KCA Sbjct: 9 INEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ WS R +L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV++ +IDN D D+D +++I++GPDFPTGA ILGR GI+ AY TGRG I++ Sbjct: 189 VEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHILGRAGIEEAYRTGRGKIIV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + + +IVVTE+PY VNKA ++E IA++V+ KRI I +LRDES+R G R+ Sbjct: 249 RAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDESNRNGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +IL +LY++T LQ+ F NM+ L +P L +L ++ +E VV Sbjct: 309 CIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNEPVVMNLKQMLGFYLEHQENVVR 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR++Y LNKA +RAH+L GL +A+ +DEV+ IIR S A+ +L+ Sbjct: 369 RRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLI------------ 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G L +VQ +AI+++RL LTGL R+ ++ E +SL IKE +I Sbjct: 417 --------------GRFSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +LLG+IK+E+ ++D+ RR++IV D+ ++D I E+ V+ ++++GY+KR Sbjct: 463 LGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMTNMGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ +EDF+ DL + +TH +LFF++ G VY+ K +++P S Sbjct: 523 MTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKAYQIPEAS 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L E++ ++ ++++ Y+ ATK G V++ LS++ I + Sbjct: 583 RTARGTAMVNLLQLQPDEQVKAVINIRKEKTDG---YLFMATKRGIVKKTALSEYANIRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ ENDI L TK G C+RF +R GR S+GV G+++ Sbjct: 640 TGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRP-TGRTSMGVIGMTID 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D++++M + DT Sbjct: 699 DTDEIVAMQL---------------------------DT--------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q KL L VSE G GKRT +F +R GKG++ + + + G ++ VNDN Sbjct: 711 QGAKL-----LIVSENGLGKRTEISEFTTQHRGGKGVKCYKI--VEKTGLVIGAKSVNDN 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAEST 909 ++I+L++ G +IR+ V I R T GV + + D + + ++RE + E E+T Sbjct: 764 NEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDDKAAAEEETT 823 Query: 910 E 910 E Sbjct: 824 E 824 >gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908] gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018] gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017] Length = 828 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/915 (40%), Positives = 561/915 (61%), Gaps = 100/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ ++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P S A GKA++N++SL E+I + + DE S + F TK+G V+ Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624 Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715 R LS+F NR SG A+ LD DE++ + + +L+ + LG ++FP+ +R Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASHLGIFIKFPLEDVRE 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI L + D V+ A+V+ D++ Sbjct: 684 I-GRTTRGVRGIKLNENDFVVG-AVVISDDSNK--------------------------- 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L+VSE G GK+T + +R +R GKG+ +++ Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749 Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G LV+V V+D N +++++ +IRV + +IR R GV + +T ++VV V Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTT--DKVVYV 806 Query: 895 ERIRESEIVDEAEST 909 + E + E++ Sbjct: 807 NSCPKEEEPENLETS 821 >gi|307693840|ref|ZP_07636077.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16] Length = 852 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/895 (40%), Positives = 546/895 (61%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+ +K + K A Sbjct: 19 IKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGLTSDKPFKKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G+V+G+YHPHG+ ++YDAL R+ QD+S+R +L++G GNFGS+DGDPPAA RYTE R+ Sbjct: 79 TCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNFGSIDGDPPAAYRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +L D+ K+TVD+ PN+D S +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 139 SKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ + V+DN + LD LME I+GPDFPT +I+GR+GI+ AYATG+G I +R + Sbjct: 199 TEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIMGRSGIRAAYATGKGHIRVRARTE 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ DR +I+VTEIPYQVNK +++ +A+ V +KR+ I+D+RDESDR G R+VIELK Sbjct: 259 FEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESDRNGMRIVIELK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373 R A+ V+LN+L T LQ F++NM+AL + +P+ TL IL ++AF+E+++ RRT Sbjct: 319 RDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLREILDEYIAFQEQIITRRT 378 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 Y KA++RAH+L GL IA N+DEV++IIR S + A+ LM R Sbjct: 379 IYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYD--NAKERLMTR------------- 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L +VQ +AIL++RL L GL R+ + E L I +LS Sbjct: 424 -------------FGLDDVQAQAILDMRLKALQGLDREKLEAEYKELEERIAYYDKLLSD 470 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K EL ++D+ R+T I D++ ED I E V T++ GY+KR P+ Sbjct: 471 EGLLRQVLKDELTEIRDKYGDQRKTEIAFVEDDLDIEDLIEEEQCVFTLTQAGYIKRTPV 530 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y AQ +GG+GR G+ RDED V D+F STH + FF+ G VY++K +++P A Sbjct: 531 SEYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTA 590 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G ++NIL + QGE++ T++ E ++ +LY+V T++G V+R ++ I SG Sbjct: 591 KGTNIVNILQVEQGEKVQTMIHTRELDNP--DLYLVMVTRNGTVKRLPVTALKNIRNSGI 648 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A++L+ D+++SV IL+ T G V F + +R GR++VGVRGI L +GD Sbjct: 649 RALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRPM-GRDAVGVRGIRLREGD 707 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S A R +G T Sbjct: 708 YVVSAA-----------------------RATAGRT------------------------ 720 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +LT++EKG+GKRT D+RI+NR G GI+ V++ + G +V + V+ ++ + Sbjct: 721 ------VLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTE--KTGKIVGIKVVDGSEDL 772 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIVDEAE 907 +LV+ G LIR V+ IR A RAT+GV++ ++ ++V+S+ E + A+ Sbjct: 773 LLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEGDKVISLALAEREETAEVAQ 827 >gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180] gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180] Length = 833 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/904 (41%), Positives = 555/904 (61%), Gaps = 96/904 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 13 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 72 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 73 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 132 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 133 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 192 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 193 PHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 253 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 311 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++R Sbjct: 312 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 371 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 372 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLMER----------- 420 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 421 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 465 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV++SH GYVKRV Sbjct: 466 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVVSMSHKGYVKRV 525 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 526 DLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 586 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-GGN 639 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++ + + +L+ + LG ++FP+ +R GR++ GV G Sbjct: 640 RSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-GRHTRGVMG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D + Sbjct: 699 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 719 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V Sbjct: 720 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQ--KTGNLVGVIS 764 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D N +++++ +IRV + +IR R GV + +TA ++VV V + E + Sbjct: 765 VDDENLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTA--DKVVYVNSCPKEEEPEN 822 Query: 906 AEST 909 E++ Sbjct: 823 LETS 826 >gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10] Length = 855 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/903 (40%), Positives = 537/903 (59%), Gaps = 95/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS R +L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG GIAVGMATNIP HNL Sbjct: 129 SRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E++ V +IDN D ++ LMEI++GPDFPTGA ILG+ GI+ AY TG+G I + Sbjct: 189 RELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRTGKGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+VTEIPY VNKA ++EKIAELV++KR+ I DLRDES+R+G R+ Sbjct: 249 RAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+++LNQL ++T LQ F VNM+AL +P+ L +L ++ +++VV Sbjct: 309 CIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLDHQKDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL A+ +DEV+RIIR S A+ LM+R Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL LTGL R+ + NE L I E I Sbjct: 419 ----------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKRIAELRGI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ ++LL +IK+E+ + D+ RRT+I DM ED I ED+VV +++LGY+KR Sbjct: 463 LADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAITNLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ DED++ +L + +TH ++FF++ G VY+ K + +P Sbjct: 523 MSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A++N++ L GE+IT +P E DE ++ ATK+G V+R + ++ + Sbjct: 583 RTARGTAIVNLIQLQPGEKITATVPMKEFDEDK----FLFMATKNGMVKRTPMKEYENVR 638 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++ V+ DI L TK G C+RF + +R+ GR S+GV G+ Sbjct: 639 KNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVRI-TGRVSMGVIGMKF 697 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D++I M + S+ Sbjct: 698 DSDDEIIGMQMA--------------------------------------------SQGE 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 C +L VSE G GKRT +F R GKG+R +++ + G LV V++ Sbjct: 714 C---------LLVVSEYGLGKRTPIEEFTSQLRGGKGVRCYRITE--KTGYLVGAKLVDE 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV--SVERIRESEIVDEAE 907 QI+L++++G +I++ VN I I R T GV + + VV S+ ++RES DE E Sbjct: 763 GRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDPESGVVVASIAKVRESS-QDEDE 821 Query: 908 STE 910 E Sbjct: 822 ELE 824 >gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] Length = 806 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/883 (40%), Positives = 546/883 (61%), Gaps = 89/883 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++K Sbjct: 3 ERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA RY Sbjct: 63 YSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN+ Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + + Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R+ Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIE KR A+ +++LN LY+YT +Q+ F +N+ +NG P+ TL ++ ++ +E VV Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V D+ ISE Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G+GK+T ++ NR GKGIR ++K + G + + Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 +D+I+L+S + +IR+ I SR T GV++ +T K E + Sbjct: 755 DDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAI 797 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +QFI+ +++KG K+TS + N GI A K +E L+ V V N+++ Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I+V+ KG ++ V+++R SR GV + KD+ V+S + ++++E + Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707 >gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] Length = 822 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/885 (40%), Positives = 541/885 (61%), Gaps = 88/885 (9%) Query: 10 EEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 EEE K + V I+ EM+ ++L Y+++VI+ RA+PD+RDG+KPVHRRIL M Q+G+ Sbjct: 2 EEENKRYDYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGIT 61 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R L++G GNFGS+DGD A Sbjct: 62 SGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGAA 121 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K + ++ D+ KDTVDF PNYDG EPVVL +R PN+L+NG GIAVGM Sbjct: 122 AMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVGM 181 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E + AV+DNPDI + LME+I+GPDFPTG +ILGR GI+ A+ TGRG Sbjct: 182 ATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIILGRKGIRQAFETGRG 241 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 SI+IR +E+ + ++QI+ EIPYQVNKA ++ K+A L+R+K I + L DES+R+ Sbjct: 242 SIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNRE 301 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+V+ELK+ A +VILNQL+R T LQ+ F +NM+AL +P++ L I+ ++ + Sbjct: 302 GIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENGRPKQLPLKDIIHDYIDHQV 361 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VVVR+T++ L KA+DRAH+L GL IA+ ++DEV+ +IR S E + Sbjct: 362 DVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQ---------- 411 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 DL D LS +Q +AIL ++L RL+GL RD I NE L + I++ Sbjct: 412 --DLCD-------------AFGLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIED 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL++ R+L II+ +L + + RRT I + +DMEDED I ED+++T++ G Sbjct: 457 LKDILANHDRVLQIIRDDLNEIDQKYGDERRTEISDASVDMEDEDLIPVEDVIITLTESG 516 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR + YRAQ RGG+G + + +ED + + +STH +L F+ G VY+ K + + Sbjct: 517 YIKRQLVDTYRAQNRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNV 576 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P GS ++G ++N+++L +GE++ ++ P+D+ S ++F TK+G V+R +S+F Sbjct: 577 PSGSRTSKGIPIVNLMTLEKGEKVNVLVAVPKDDESET---LLFVTKNGIVKRTSVSEFE 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 INR+GKIA+ L DE+ V+ T +++++++ G+ VRF +R+ GR++ GV G Sbjct: 634 NINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIM-GRSASGVLG 692 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + G +V+ A+ S EG+ Sbjct: 693 FN-CDGSEVVGAAL---------------------------------------SSEGDT- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L VSE G+GKR+ D+R+++R KG+ ++++ + G L+ + Sbjct: 712 -------------VLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITE--KTGKLMCMRA 756 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 V + ++V+ G +IRV + + I R T+GV + + D +V Sbjct: 757 VTGKEDAMIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAKV 801 >gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427] gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427] Length = 844 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/903 (41%), Positives = 542/903 (60%), Gaps = 98/903 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I DEMQN Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K+Y K ARI G+ Sbjct: 16 INDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLGSDKQYRKSARIVGD 75 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 MGKYHPHG+++IY A+ RMAQ++S R L++GQGNFGS+DGD PAA RYTE R+ K Sbjct: 76 TMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPAAMRYTEARMSKMTA 135 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDTV+FRPN+D S +EP VL +R+PN+LVNG GIAVGMATNIP HNL EVV+ Sbjct: 136 LMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVVN 195 Query: 201 GCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 G + +IDN + +++ LM II GPDFPTGA I GR GI AY TGRG + + Sbjct: 196 GVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRYGIDQAYRTGRGKVKV 255 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 + + IE G + +IVVTEIPY VNK++++EK+A+LV+E++I I D+RDESDR G + Sbjct: 256 KAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDGITDIRDESDRNGISM 315 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R + VILNQLY+YT LQ FS+NM+AL KP+ L IL+ ++ ++EVV Sbjct: 316 VIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLKQILEEYLKHQKEVVT 375 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA RAH+L GL A+ N+D VV +IR S N + A+ +LM+ Sbjct: 376 RRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKDKLME----------- 424 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + L+E+Q +AI+E+RL LTGL R+ I E L +I+ I Sbjct: 425 ---------------AIELTEIQAQAIVEMRLRALTGLEREKIDQEYAELLEKIEYLKSI 469 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S +LL +IK E+ VK + RRT I + + ED I E++VVT++ LGY+KR Sbjct: 470 LASEYKLLSVIKDEITEVKQKYGDGRRTDITIDEDEYDIEDLIDEENIVVTITQLGYIKR 529 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL Y+ Q RGGKG GV ++DF+ LF+ + ++FF++ G Y+ K +R+P Sbjct: 530 IPLDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAG 589 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A++N+L L++ E+IT + P E E +N ++ TK G +++ L DF I + Sbjct: 590 RTARGTAIVNLLELDKDEKITAVFPIKEFE---DNTFLTMVTKKGQIKKTPLKDFRNIRK 646 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G IA+ L+ DE++ V T ++ IL+ T+ GQ + F + +R GR + GVR I+L Sbjct: 647 GGLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRPM-GRTARGVRAINLG 705 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VI + E+I +R + +E +++R Sbjct: 706 ETDEVIGATVPKEG-----EQILTTTEKGLGKR---------------TQIEAFRAQKRG 745 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 G G R + +I+ ++G I VS+ +E Sbjct: 746 ----------------GKGLRIN----KITEKTGCIIGVASVSEEDE------------- 772 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI---VDEAE 907 ++L++ +G +IR+ V +I R +GV + + A D +VV +E++ E I V+EA Sbjct: 773 --LLLITSQGIIIRIKVAQISSIGRNAQGVKLINVADDVQVVCMEKVNEEFIDDNVEEAS 830 Query: 908 STE 910 TE Sbjct: 831 ITE 833 >gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14] Length = 849 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/900 (40%), Positives = 551/900 (61%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ K+TVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID+ D ++ ++EI++GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +I+VTE+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G R+ Sbjct: 249 RAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL +P+ L+ +L+ ++ +E+VV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQPKVMNLLEMLQYYLRHQEDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA++RAH+L GL IA+ N+DEV+RIIR S N + A+ EL++R Sbjct: 369 RRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKRFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+VQ +AI+++RL LTGL R+ I E L +I+E I Sbjct: 421 ------------------LSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + LLG+IK+E+L + ++ RRT+I D+ ED I RE++V+T++ LGY+KR Sbjct: 463 LADKKLLLGVIKKEILVIAEKYGDDRRTKIGFDEFDISMEDLIPRENVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ ++D++ +LFI ++H ++FF++ G VY+ K + +P Sbjct: 523 MSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT I+P E E Y+ AT+ G V++ + D+ + + Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPLREYEEGK---YLFMATEKGLVKKTPIQDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ DI L TK G C+RF + +R GR S+GVRG++L Sbjct: 640 TGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRS-TGRVSMGVRGMNLT 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI M +I S D Sbjct: 699 DNDVVIGM--------------------------------QIESQGKD------------ 714 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VSE+G GKRT +F NR GKG++ +++ + G +V + V+++ Sbjct: 715 ---------MLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITE--KTGNVVGMKAVDED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +I++++ +G +IR+ ++I + R T GV + + +++ V SV ++R++ + E E Sbjct: 764 SEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVAKVRKASAEIDGEEVE 823 >gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] Length = 851 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/897 (40%), Positives = 549/897 (61%), Gaps = 84/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NPD LM+++ GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R SA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A++ + EV+ Sbjct: 303 ISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKDILVAYLTHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 DG LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 --------------DG-YALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ + R+ II ELL ++ + RRT + G + ++EDED I ED++VT++ GY+ Sbjct: 457 ILAHQERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L+ E+I ++ E+S + Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLNFEDDEKIQAVISV-RGEASESKDYLFFVTRLGVVKRTAVSEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ IL+ T+ G VRF ++RV GR++ GVRGI Sbjct: 636 RTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVM-GRSAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D VI +V TS N Sbjct: 695 LRDNDVVIGADVV-------------------------------TSSDN----------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKGFGK+T + ++ I R GKGI+ +++ N G L + ++ Sbjct: 713 -----------VLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKN--GVLAGMTIIH 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++ I++ + +G +IR + + RAT GV + + +V ++ ++ + ++ DE Sbjct: 760 GHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQEDLPDE 816 >gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum] Length = 817 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/882 (41%), Positives = 535/882 (60%), Gaps = 90/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+ +EM+ SYL YA++VI+ RA+PD+RDGLKPV RR+L+ M ++G ++K Y K A Sbjct: 6 LIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+ +GKYHPHG+ +Y+A+ RM Q +S+R LI+GQGNFGSVDGD PAA RYTE RL Sbjct: 66 RVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRYTEVRL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TVDFR NYDGS EPVVL AR+PNVLVNG GIAVGM+TNIP HNL Sbjct: 126 APIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ++++P +D LM+ ++GPDFPT I GRTGI++AY TGRGS+ +R + Sbjct: 186 GEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFICGRTGIRDAYLTGRGSVTLRARAA 245 Query: 256 IEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 I+ +G +R+ IVVTE+PYQVNKA++LEKIAELV EK+I IADLRDESDR+G RVV Sbjct: 246 IDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDREGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A A V+LN L++YT +QS + M+A+ +P+ L+ +L FV R EVV R Sbjct: 306 IELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGRPQVLNLVEMLNYFVEHRREVVRR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA R H+L GL A+ L+ ++ +IR + + AR LM R Sbjct: 366 RTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTR----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LS VQ +AILE++L RLT L R + E L + E +IL Sbjct: 415 ---------------FALSRVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++L +I QEL V+ TPRRT+IV+ D ED I +E++V+T++ GY+KR Sbjct: 460 DKEAKLREVIVQELQEVRKAYGTPRRTQIVDCESTDFTIEDLIPKEEVVITITREGYIKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+S YR Q+RGG GR G+ + ED V L+I STH+ +L F++ G VYK +V +P + Sbjct: 520 TPVSAYRTQKRGGVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAA 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 RGKA++N++ L +GERI +P E S ++VFAT+ G +++ +LS++ I Sbjct: 580 TSGRGKAIVNLIELPEGERIAGTIPVREFASGQ---FIVFATRRGIIKKTELSEYANIRS 636 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G +AM + DE+++V+ IL++T GQ + F S +R GR + G+ GI L Sbjct: 637 NGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP-TGRMAQGIIGIRLR 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D V M++V G TE+I SL Sbjct: 696 ENDYVTGMSVV-------------------------GRTEDILSL--------------- 715 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 SE G KRT ++ + +R G+G+ V++ G ++ PV+++ Sbjct: 716 -------------SELGLSKRTPITEYPVHHRGGQGVATMYVTE--RTGGVIKTLPVHED 760 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 D+ ++++ +G + R+ V+++R R +GV + + A+ +RVV Sbjct: 761 DEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDRVV 802 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L KE+ ++T++ +G+ KRT +R R G G R +E+ +L + + + Sbjct: 499 EDLIPKEEVVITITREGYIKRTPVSAYRTQKRGGVGRRGMTTKAEDEVESL---YIASTH 555 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 +++ + KG + +V V+EI A+ + +G V + + ER+ +RE Sbjct: 556 SFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLIELPEGERIAGTIPVRE 607 Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust. Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 19/209 (9%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +V + G +K+ LS Y R G G+ DE S H + F Sbjct: 613 FIVFATRRGIIKKTELSEYANIRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAI 672 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATKHG 655 +KE R P R I + L + + +T +++ ED S + L G Sbjct: 673 CFKESDVR-----PTGRMAQGIIGIRLRENDYVTGMSVVGRTEDILSLSEL--------G 719 Query: 656 NVRRNKLSDFIQINRSGK--IAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISA 712 +R ++++ +R G+ M + R ++ ++++ ++ T+ GQ R +S Sbjct: 720 LSKRTPITEYPVHHRGGQGVATMYVTERTGGVIKTLPVHEDDEFMVITQQGQVARLKVSD 779 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R R + GV+ I+LA+GD+V+ +V Sbjct: 780 VRQ-TKRLAQGVKVIALAEGDRVVDACLV 807 >gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] Length = 806 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/883 (40%), Positives = 545/883 (61%), Gaps = 89/883 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+ ++K Sbjct: 3 ERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRK 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K AR+ GEVMGKYHPHG+ AIYDA+ R+AQD+++R L++GQGNFGS+DGD AA RY Sbjct: 63 YSKSARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A +L D+ KDTVDF+ NYDG QEPVVL +R+PN++VNG GIAVGMATN+ Sbjct: 123 TELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNLGE +D +A IDNP+I ++ LM+ I+ PDFPTG I+G +KNAY TGRG + + Sbjct: 183 APHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVRL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE++ G R +I+VTEIPYQVNK+ +++KIA+LV++K+I I+DLRDESDR+G R+ Sbjct: 243 RAEARIEESKG-RFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VIE KR A+ +++LN LY+YT +Q+ F +N+ +NG P+ TL ++ ++ +E VV Sbjct: 302 VIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGV-PKVLTLKQLIDHYLVHQEIVV 360 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA+ R H++ GL A+ N+DE++ IIR S + A +LM+R Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTS--YDDALEKLMERFG------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE+Q +AIL++RL RL GL ++ ++NE + L I++ + Sbjct: 412 -------------------FSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL++R LL IIK EL ++ + RRT+I+ D ED + + EDM +T+++ GY+K Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ Y+ Q RGG+G + + M+D DF+ D+F +TH +LFF++ G VY K + +P Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ARG +IN++ ++ E +T ++ D+ N+ +++F TK G V++ LS + I Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G IA+K D DE++ V+ + ++++ TK G ++F + +R + RN++GV+ I+L Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D+VIS +V D+ ISE Sbjct: 690 NKDDEVISFDLV-----------------------------------KDNEFLAVISEN- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G+GK+T ++ NR GKGIR ++K + G + + Sbjct: 714 -----------------GYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 D+I+L+S + +IR+ I SR+T GV++ +T K E + Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAI 797 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 62/110 (56%), Gaps = 5/110 (4%) Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K +QFI+ +++KG K+TS + N GI A K +E L+ V V N+++ Sbjct: 603 KENDQFIIFITKKGKVKKTSLSLY--ENIRKTGIIAI---KFDEGDELIDVKLVEKNEEV 657 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I+V+ KG ++ V+++R SR GV + KD+ V+S + ++++E + Sbjct: 658 IIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLVKDNEFL 707 >gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 840 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/900 (39%), Positives = 543/900 (60%), Gaps = 95/900 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I D+M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N Y Sbjct: 3 EGEKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQDW++R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+++ A +L D+ K+TVD R N+D + +EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG VA ++N +I +D L+E I+ PDFPTG I G G++ A+ TGRG I+IR Sbjct: 183 PHNLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIYGYDGVREAFKTGRGRIIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +H E+ +R+ I+VTEIPYQVNKA M+++ A+LV+E ++ IAD+ DE+ + G R+V Sbjct: 243 GKAHFEEVD-NRDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ A +V+LN L+++T LQS FSVN +AL +PE+ L ++ FV R +VV R Sbjct: 302 YVLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNGRPEQLNLKDLIYHFVEHRHDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KA+++AH+L G +A LD + IIR S NP+ A+ EL++ Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKE-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q++AIL+LRLARLTG+ + IR E + I + Sbjct: 414 ------------------FELSEIQSQAILDLRLARLTGMELNKIREEYEQIMALIMDLE 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK EL+ VK + RR+ I D+ ED I E +V+T+S+ GY+ Sbjct: 456 DILAHKERRTEIIKNELIEVKAKYGDDRRSIIEYSGGDISMEDIIPNEQVVITISNAGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P++ Y+ Q RGG G+ RD+DF+ LF+ + H +LFF+ G + +V+ +P Sbjct: 516 KRTPVNEYKTQARGGVGQKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +G+A+ N+++++ + + + + D+ N+ YV+ ATK G +++ L + Sbjct: 576 GGRNTKGRAIQNLINIDSEDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G +A+ + DE+L T + +++ K G+ +RFP +R GR+ GVRG Sbjct: 636 RPRQNGIVAITIKEDDELLEARLTTGSSQVMMAVKSGKAIRFPEEKVRS-VGRSGSGVRG 694 Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 IS K D+VI M + + Sbjct: 695 ISFDDEKNDEVIGMITIENP---------------------------------------- 714 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINE 837 KE+ +L VSE G+GKRT D +RI+NR GKG++ +++ + Sbjct: 715 -----------KEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITE--K 761 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LVA+ V+ D +++++ G IR+ V +R+ RAT+GV + + +++ + +V ++ Sbjct: 762 TGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKV 821 >gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] Length = 813 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/894 (40%), Positives = 559/894 (62%), Gaps = 92/894 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM +G++ NK Sbjct: 3 EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R L GQGNFGS+DGD AA R Sbjct: 63 PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K A +L D+ KDTVDF PN+D +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNLG+ +D C+A ++NP+I + L +II+GPDFPTGA ILG+ GIK AY TGRG + Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R V+ IE +RE+I+VTEIPYQVNKA +++KIAE V++K++ I+D+RDESDR+G R Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR ++A+++LN LY+ T L++ F + +AL P+ L ++K +V +++VV Sbjct: 303 IVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S++ IK Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIR--------------SSYDNDQIKK 408 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + + L++ Q++AIL+++L RL+GL + ++ E L +I+ Sbjct: 409 IFN------------EKFGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L+ +I++E+L +K++ RRT+IV EG D+E+ I +ED++++++H GY Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEE--LIEKEDVLISLTHDGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ Y+ Q RGGKG S ++ DF+ + +TH S+L F++LG VY K + +P Sbjct: 515 IKRLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666 S Q+RG+A+IN++SL+ E+IT IM +E S +VF T++G +++ F Sbjct: 575 EASRQSRGQAIINLISLSSDEKITDIMELSNLNEKSQ----LVFQTENGKIKKTDAELFT 630 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I R+G IA+ L+ D ++S+ + DI++TTK G ++F S IR GRN+ GVR Sbjct: 631 NIQRNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRA 689 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D+V+SM NI Sbjct: 690 IRLGEDDKVVSM---------------------------------------------NIV 704 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E+ E +++ V+ GFGK+TS +F NR GKG+R +++ + +VA P Sbjct: 705 ED--------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTKDVVATLP 754 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRE 899 N +D I++VS KG +IR+ +I R T GV + + E +VSV + E Sbjct: 755 ANLDDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDYIVSVTKYYE 808 >gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24] Length = 828 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/915 (40%), Positives = 562/915 (61%), Gaps = 100/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P S A GKA++N++SL E+I + + DE S + F TK+G V+ Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624 Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715 R LS+F NR SG A+ LD DE++ + + +L+ + LG ++FP+ +R Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVRE 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV GI L + D V+ A+V+ D++ Sbjct: 684 I-GRTTRGVMGIRLNENDFVVG-AVVISDDSNK--------------------------- 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L+VSE G GK+T + +R +R GKG+ +++ Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749 Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G LV+V V+D N +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 750 -KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYV 806 Query: 895 ERIRESEIVDEAEST 909 + E + E++ Sbjct: 807 NSCPKEEEPENLETS 821 >gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27] gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27] Length = 833 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/904 (41%), Positives = 557/904 (61%), Gaps = 96/904 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 13 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 72 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 73 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 132 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 133 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 192 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 193 PHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 253 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 311 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 312 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 371 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 372 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 420 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 421 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 465 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PR T I E +++ ED I E MVV++S+ GYVKRV Sbjct: 466 KSEDRLNGVVKTELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 525 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 526 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 586 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 639 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV+G Sbjct: 640 RSYSGIRAIVLDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREI-GRTTRGVKG 698 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I LA+ D V+ A+V+ D + Sbjct: 699 IRLAENDFVVG-AVVISDDGNK-------------------------------------- 719 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 720 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQ--KTGNLVSVIS 764 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D N +++++ +IRV + +IR R GV + +TA ++VV V + E + Sbjct: 765 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPEN 822 Query: 906 AEST 909 E++ Sbjct: 823 LETS 826 >gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7] Length = 826 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/880 (41%), Positives = 546/880 (62%), Gaps = 93/880 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D + V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F + N Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-ESN 634 Query: 670 RSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 RS I A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV GI Sbjct: 635 RSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGI 693 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ A+V+ D + Sbjct: 694 RLNENDFVVG-AVVISDDGNK--------------------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V Sbjct: 714 ------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISV 759 Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 +D N +++++ +IRV + +IR R GV + +TA Sbjct: 760 DDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799 Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601 >gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 811 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/888 (40%), Positives = 547/888 (61%), Gaps = 96/888 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y + RMAQD++ R LL+EG GNFGS+DGD AA RYTE R++K Sbjct: 69 VLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEARMEKITA 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ KDT+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE+VD Sbjct: 129 ELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHNLGELVD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+IDN DI++ LM I+GPDFPTGA+I GR GI +AY TGRG I +RG IE+ Sbjct: 189 GILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIDAYKTGRGKIKVRGKVDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE+K+G Sbjct: 249 NGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIEVKKGEEP 308 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++LN+LY+YT LQ+ F V M++L P L +L ++ R +V+ RRT + L+KA Sbjct: 309 ELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRTAFDLDKA 368 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L G IA+ N+D ++ +IR S + AR +L+++ Sbjct: 369 EKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYA------------------ 410 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 +++Q R+IL+++L RLTGL R+ I E + IKE ++L +++ I Sbjct: 411 --------FTDIQARSILDMKLQRLTGLEREKIDTEFKEIETLIKELREVLEDNNKIYDI 462 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K++ RRT+I E +++ ED I E++++T ++ GYVKR+ S Y+AQR Sbjct: 463 MKKELLELKEKYGDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQR 522 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG S + ++D+ + ST +++ F+ G VY + + +P S Q+RG+ L N Sbjct: 523 RGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSN 582 Query: 621 ILSLNQGERI---TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 I++L++GE++ I F PE E VVF TK G +++ L +F IN SG IA+ Sbjct: 583 IINLSEGEKVRDTIVIKEFSPEKE-------VVFITKKGLIKKTSLGEFKNINNSGLIAI 635 Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 K D+++ V E +E +IL+ T G C RF IR GR++ GV+ I+L +GD Sbjct: 636 KTREDDDLIFVGLIEDVNKE-EILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLREGD 693 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V+S ++ + + D Sbjct: 694 AVVSAMLIKNPETD---------------------------------------------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ILT++E G+GKRTS ++ NR GKG+ S+ + G +V+V V +++++ Sbjct: 708 ------ILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDEEL 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ G +IR ++EI RAT+GV I A DE+V ++ +I++ E Sbjct: 760 MCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEE 807 >gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] Length = 843 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/901 (41%), Positives = 542/901 (60%), Gaps = 89/901 (9%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 +I + + + ++ M++S+L Y+++VI+ RA+PD+RDGLKPVHRRILF M + G Sbjct: 16 VIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGLKPVHRRILFSMEKNG 75 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 ++VK ARI+G+VMGKYHPHG+AAIYD++ R+AQDWS+R +L++GQGNFGS+DGDP Sbjct: 76 WRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYMLVDGQGNFGSMDGDP 135 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 PAA RYTE R+ K LL DL K+TVDFR NYDG +EP VL A+ PN+L+NG GIAV Sbjct: 136 PAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPAKLPNLLLNGQIGIAV 195 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 GMATNIP HNL E+VD V +ID P D L+ L++ ++GPDFPTG ++ G ++ AYAT Sbjct: 196 GMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTGGIVYGGDSMRQAYAT 255 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303 GRG I +R ++ IE+T + QIVVTE+PY VNKA ++E+IAEL +EK+I I D+RDES Sbjct: 256 GRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELHKEKKIT-IQDVRDES 314 Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFV 362 R R+VIELK+ + +LNQLY+ T+LQ+ F NM+AL +G +P L IL+ ++ Sbjct: 315 ARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDGIQPRVLGLQDILEEYL 374 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ VV RRT++ L KA+DRAH+L G IA+ N+DEV++IIR S N + A R LM + Sbjct: 375 KHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRASQNTDEAARNLMDK-- 432 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSEVQ ++IL L L LTGL R I +EL L Sbjct: 433 ------------------------FKLSEVQAKSILALPLRTLTGLERQKIEDELAELRA 468 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVT 541 I + IL+ +L IIK ELL +K++ RRT+I+ + L DE+ I ED++V Sbjct: 469 LIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGKFSDEELIPDEDVIVL 528 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ Y+KR +S YR Q RGGKG+ G+ ++ D + L STH +LFF++ G V++ Sbjct: 529 LTTENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRI 588 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P S A+G A +N+L L ERIT+I+ ++ ++ Y+ AT HG V++ Sbjct: 589 KTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRL--EKGQKDDGYLFMATTHGTVKKTP 646 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L ++ I +G IA+KLD DE+ + + +N+++++T GQ +RF S R GR++ Sbjct: 647 LKEYSNIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAIRFNESDARPM-GRSA 705 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L GD+++ M Sbjct: 706 RGVRGIRLRPGDRLVGM------------------------------------------- 722 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +L ++ +L VS+KG+GK T + +F R G GI++ V+ + G + Sbjct: 723 ----------DLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVGIKSAVVTA--KTGNV 770 Query: 842 VAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 VAV + + +++++S KG IRV + +I R T+GV I ++ + V S+ I E Sbjct: 771 VAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRLSEGDEVASLGIIPEQ 830 Query: 901 E 901 + Sbjct: 831 Q 831 >gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] Length = 859 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/883 (39%), Positives = 539/883 (61%), Gaps = 87/883 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 3 DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA RY Sbjct: 63 TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN+ Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG +V Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+ + + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G R Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EVV Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+K Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P G Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575 Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + A+G+A+ N+L+++ +++ I D+ N+ Y++F TK G +++ L F Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+G Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694 Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++L D+V+ M + H + Sbjct: 695 MTLDDDGEDEVVGMISIKHPE--------------------------------------- 715 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV + Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IRV V ++ I RAT+GV + +K Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804 >gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] Length = 834 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/893 (40%), Positives = 548/893 (61%), Gaps = 85/893 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE ++ Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 130 SKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++G ++++PDI + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R Sbjct: 190 GEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ DE+DR G R+VI+++ Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E VV RRT++ Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E L I + DIL+ R Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++ RRT + G + ++EDED I ED++V ++H GY+KR+P+ Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY K + +P A+ Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N E+I+ ++ E++ ++ Y+ F TK G V+R +++F I +G Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ VE +++ +++ T G + F S +R GR++ GVRGI L D Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A L +DS V Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SE GFGK+TS+ ++ I R G G++ +V+ N G LV + VN ++ I+ Sbjct: 715 ------LVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--GPLVGLTTVNGDEDIM 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 LV+D+G +IR + + R+ GV + RV ++ ++ + E+ +E E Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV-DKEVDEETE 818 >gi|220903292|ref|YP_002478604.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 855 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/885 (40%), Positives = 535/885 (60%), Gaps = 89/885 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++ +N+ + K ARI Sbjct: 9 ISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARIV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD PAA RYTE R+ + Sbjct: 69 GDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSRL 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L DL K+TVDFRPNYD + QEP V+ ++ PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 129 AQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 D ++D+P +D LME ++GPDFPT + G+ +AY TGRG++ +RG IE Sbjct: 189 CDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGKGLYDAYHTGRGTVKVRGRMEIED 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + IV+ EIPY +NK++++EKIA LV +++I I DLRDESDR+G RVVI+LKRG Sbjct: 249 RKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKRGT 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++++N LY++T L+S F +NM+A+ +P+ L L FV R EVV+RRT+Y L Sbjct: 309 IPEIVINALYKFTPLESSFGINMLAVVDNRPQLLNLKSALTCFVDHRREVVIRRTRYDLE 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL +A+ N+DEVV +IR S +P+ AR LM+R Sbjct: 369 KAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKR------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q +AILE+RL RLTGL R+++ E L +I+ IL + L Sbjct: 411 --------FELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLR 462 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 G +K+E+ +++ TPRRT ++ E L D++ ED I ED+V+T+S GY+KR L Y+ Sbjct: 463 GELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENYQ 522 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P GS A+G Sbjct: 523 QQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVH 582 Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 + N+L L GE +TT++ F ED+ Y +F TK G V+R+ S + + ++G + Sbjct: 583 INNLLPLEDGEWVTTVLALREFAEDK------YFLFVTKRGMVKRSSASLYARCRKTGLM 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V ++ I+L T G +RF +R GR + GV+GI+L + D Sbjct: 637 AVGLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPM-GRVATGVKGIALRRQDF 695 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++ IV +T++ T Sbjct: 696 VVAGVIV-------------------------KETDQTTE-------------------- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 I+++S GFGKRTS +R+ +R GKGI V+ + G +V PV D+D +I Sbjct: 711 -----IMSISANGFGKRTSIELYRLQSRGGKGIINFKVT--GKTGPVVGAMPVRDDDSLI 763 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L++ ++R+ ++E+R RAT GV++ + VV +R+ E Sbjct: 764 LLTSANKIVRIGLDEVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 808 >gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8] gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8] Length = 826 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/881 (41%), Positives = 545/881 (61%), Gaps = 94/881 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D + V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ +PRRT I E ++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-GGN 634 Query: 670 R--SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++ + +L+ + LG ++FP+ +R GR + GVRG Sbjct: 635 RSYSGIRAIVLDKGDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D++ Sbjct: 694 IKLNENDFVVG-AVVISDDSNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 V+D N +++++ +IRV + +IR R GV + +TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 800 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] Length = 865 Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/895 (40%), Positives = 540/895 (60%), Gaps = 94/895 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL M+++ +K + KCARI Sbjct: 13 VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ MGKYHPHG+++IY+AL ++AQ+W+ R L++G GNFGSVDGD AA RYTE RL K Sbjct: 73 GDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG GIAVGMATNIP HNL E Sbjct: 133 SMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192 Query: 199 VDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 + + +IDN + D+D LM+I++GPDFPTGA ILGR GI +AY TGRG I +R + Sbjct: 193 IYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRAI 252 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE + + +I+VTE+PY VNK+ +++ + +LV+ KRI I D+RDES R+G RVVIE Sbjct: 253 TEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVIE 312 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L++ +A+VILNQL+++T LQ F M+AL P+ L +L ++ +E+VV RRT Sbjct: 313 LRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNLKDMLTYYLKHQEDVVTRRT 372 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y LNKA +RAH+L G IA+ N+DEV+ IIR S N A+ +L++R Sbjct: 373 RYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------- 419 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q AI+++RL LTGL R+ I NE N L +I E +IL+ Sbjct: 420 -------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELKAKIAEYKEILAD 466 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++LLG+IK EL ++ D+ RRT I D+ DE+ I RE++V++++ LGY+KR+P Sbjct: 467 ENKLLGVIKTELTAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMPK 526 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 ++ Q RGGKG G+ + D D + ++F+ +TH ++FF+++G VY+ K + +P A Sbjct: 527 DTFKVQNRGGKGIKGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNA 586 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG A++N+L L E++T I+P + ++ Y++ ATK+G V++ K+ F I ++G Sbjct: 587 RGVAIVNLLQLLPNEKVTAIIPI----TGFDKKYLMMATKNGIVKKTKIEAFENIRKTGL 642 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ L+ DE++ V+ + ENDI L T G C+RF +R GR S+GVRGI K D Sbjct: 643 AAITLNDGDELIEVKATSGENDIFLVTTKGMCIRFNEDCVR-DTGRTSMGVRGIRCDKND 701 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI+M + + D Sbjct: 702 EVIAMQLDVQGD------------------------------------------------ 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +T + G KRT +F R GKG++ +++ + G +V+ V ++ I Sbjct: 714 ---EILFVTANGMG--KRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHDI 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRESEIVDE 905 ++++++G +IR+ ++I + R T GV + + V SV R E E VDE Sbjct: 767 MMMTNEGIMIRMHCSDITVIGRITSGVKLMNVGSGAFVASVAKLARTEEEENVDE 821 >gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] Length = 830 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/867 (41%), Positives = 527/867 (60%), Gaps = 57/867 (6%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCAR+ GEV+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGKDTVD 152 YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRLQ + LL D+ +TVD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+DGS QEP VL +R P +L+NG GIAVGMATNIP HNLGE++DG VA+I NP+I Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KTSGDREQIVV 268 LM+ + GPDFPTGA ILG + IK AY TGRGSI +RGV+ IE + +RE I++ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240 Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328 TE+PYQ NKAA++EKIAELV +K+I IAD+RDESDR G R+VIELKR + V+LN LY Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300 Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388 + T LQ+ F NM+AL +P+ TL L F+ FR E + RRT+Y L KA +R H+L Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360 Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448 GL IA+A+LD ++ +IR +P+ TA+ EL+ +SY Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELI------------------NSYG-------- 394 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 LSEVQ AIL+++L RLT L D IR E L ++I + DIL R R+L II+ E + Sbjct: 395 LSEVQADAILQMQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454 Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 K + TPRRT I +++D D I E +++ ++ GY+KR+P+S + +Q R +G++G Sbjct: 455 KTQFTTPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAG 514 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 ++++D + H SVLFFS G VY K +++P GS +RG ++ +L + + E Sbjct: 515 AKVKEDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +IT+I+ E S Y+V TK GN+++ L F I +G IA+ L+ D++ V Sbjct: 575 KITSIVSVSEFSSEE---YLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVR 631 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ +++ ++ G + F ++ GR + GV+ + L GD++I M I+ A Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPLGRATRGVKSMKLKTGDELIGMDIL--PAAI 689 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + M+ + S + EE +++ ++L ++ G Sbjct: 690 LNTLNTEMEEELTEVEETSDNIEETSNILG--------------------PWVLIITIGG 729 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKR FR+ NR+G+G+ AT L + VN +++I++ +++G +IR + Sbjct: 730 YGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQSI 789 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894 N I I SR GV + +D+ + V Sbjct: 790 NAISIQSRTATGVRVQKLDEDDAITGV 816 >gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99] gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99] Length = 828 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/915 (40%), Positives = 561/915 (61%), Gaps = 100/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +H+++ E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V+ NP+ +LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ SP+PE A+ L++R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ +PRRT I E ++ ED I E MVV Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P S A GKA++N++SL E+I + + DE S + F TK+G V+ Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624 Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715 R LS+F NR SG A+ LD DE++ + + +L+ + LG ++FP+ +R Sbjct: 625 RTNLSEF-GGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVRE 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV GI L + D V+ A+V+ D++ Sbjct: 684 I-GRTTRGVMGIRLNENDFVVG-AVVISDDSNK--------------------------- 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L+VSE G GK+T + +R +R GKG+ +++ Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ- 749 Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G LV+V V+D N +++++ +IRV + +IR R GV + +TA ++VV V Sbjct: 750 -KTGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYV 806 Query: 895 ERIRESEIVDEAEST 909 + E + E++ Sbjct: 807 NSCPKEEEPENLETS 821 >gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] Length = 855 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/915 (41%), Positives = 548/915 (59%), Gaps = 130/915 (14%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I + D + I + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFNKDSD----IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R I+GQGNFGS+DG Sbjct: 58 LGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL AR PN+L+NG GI Sbjct: 118 DGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E+VDG + ++D+ D L+ LM+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + IR +HIEK S +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKIRAKTHIEKKS-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR+G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ Sbjct: 297 SDREGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+ TAR L+ + Sbjct: 357 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+E+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL +K + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRR 659 V+++P GS A+GKA++N+++L E+I I+P F E++S + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDENKS------LCFFTKNGIVKR 624 Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSV----------------------ETCTQENDI- 696 LS++ I G A+ LD DE+++ T + EN I Sbjct: 625 TNLSEYQNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIE 684 Query: 697 -------LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 685 SIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND---- 739 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 EQ IL++S KG G Sbjct: 740 -----------------------------------------------EQEILSISAKGIG 752 Query: 810 KRTSSYDFRISNRSGKGI---RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 KRT++ ++R+ +R GKG+ + TD +K L++V V+++ ++ ++ G +IRV Sbjct: 753 KRTNAGEYRLQSRGGKGVICMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVD 807 Query: 867 VNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 808 MQSIRKAGRNTSGVI 822 Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + + DE+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQADEKIMAI 601 >gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83] gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83] Length = 859 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/883 (39%), Positives = 539/883 (61%), Gaps = 87/883 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 3 DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA RY Sbjct: 63 TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN+ Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG +V Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+ + + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G R Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EVV Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+K Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P G Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575 Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + A+G+A+ N+L+++ +++ I D+ N+ Y++F TK G +++ L F Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+G Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694 Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 ++L D+V+ M + H + Sbjct: 695 MTLDDDGQDEVVGMISIKHPE--------------------------------------- 715 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV + Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IRV V ++ I RAT+GV + +K Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804 >gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] Length = 809 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/881 (42%), Positives = 529/881 (60%), Gaps = 85/881 (9%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I V++ EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ K Y Sbjct: 5 EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE Sbjct: 65 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ K+TVDF PNYD S +EP VL A++P +L NG GIAVGMATNIP Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HN+ EV+DG + +ID PD ++ LM +I+GPDFPT +ILG GI+ AY TGRG I +R Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRA 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 HIE TS R +I+VTE+PYQVNKA ++EKIAELVR+K I I L DESDR G R+VI Sbjct: 245 RVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIVI 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +++R A+A+VILNQLY++T LQ F V M+AL P TL +L ++ +++V+ RR Sbjct: 305 DVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITRR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKY L KA RAH+L GL IA+ +LD V+ IR S + AR LM+ D K Sbjct: 365 TKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLME------DFK---- 414 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL+LRL RLTGL R+ I E + I +L+ Sbjct: 415 ----------------LSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLA 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++ IIK ELL+V+++ RRT I ++ ED I +ED+V+T++H Y+KR+P Sbjct: 459 DEGKIDKIIKDELLAVREKYGDERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMP 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR Q+RGG G +G+ ++ DFV ++ + +TH ++LFF++ G VY K + + S Q Sbjct: 519 LDTYRRQKRGGVGVTGMGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQ 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G A+IN+L L E+IT ++ E Y+ ATK G V++ LS+F I R G Sbjct: 579 AKGTAIINLLQLESEEKITAVIQVKE---FLPERYLFMATKKGIVKKTSLSEFQSIRRGG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ LD D+++ V+ E ++L T G V F +R GR + RG+ KG Sbjct: 636 LNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSM-GRTA---RGV---KG 688 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 +LK V G + R E Sbjct: 689 ----------------------------------------INLKAGDVVVGMDNLARNAE 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +LT++ +G+GKRT++ ++R+ R GKG+ V++ + GA++ + V + Sbjct: 709 -------VLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTE--KTGAVIGLKVVRPGQE 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 +IL++ G +IR V+EI + SR T+GV + + ++ S Sbjct: 760 LILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDKAAS 800 >gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis] Length = 859 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/883 (39%), Positives = 538/883 (60%), Gaps = 87/883 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 + E I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G + Sbjct: 3 DREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA GEV+G YHPHG++++Y AL RMAQ WSLR L++GQGNFGSVDGD PAA RY Sbjct: 63 TRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K+TVDF+ N+D + QEP VL R PN+L+NG GIAVGMATN+ Sbjct: 123 TESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNM 182 Query: 191 PTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG I G +G+K A+ TGRG +V Sbjct: 183 PPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRVV 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE+ + + E+I++TEIPY VNKA ++ IA+L+ EKR+ I+++ DES+R+G R Sbjct: 243 IRSRAEIEQHN-NHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL +P L ++ FV R+EVV Sbjct: 302 IVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S + A L++R Sbjct: 362 TRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS++Q R+I+++RL LTGL RD +R E + I Sbjct: 413 -----------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEA 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+ R+ L+ ++K ELL +K++ R++ I+ + ED +DM++T+SH+GY+K Sbjct: 456 LLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIK 515 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R PLS +R Q RGG G G R+EDFV ++ S H +++ F++ G Y KV+ +P G Sbjct: 516 RTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEG 575 Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + A+G+A+ N+L+++ +++ I D+ N+ Y++F TK G +++ L F Sbjct: 576 AKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFS 635 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + +G IA+ L D ++SV + D+++ + G+ +RF S +R +GR ++GV+G Sbjct: 636 RPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVKG 694 Query: 727 ISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + L D+V+ M + H + Sbjct: 695 MRLDDDGQDEVVGMISIKHPE--------------------------------------- 715 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E+ IL VSEKG+GKR++ D+RI+NR GKG++ ++++ + G LV + Sbjct: 716 ------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVDI 761 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 V D + +++++ G IRV V ++ I RAT+GV + +K Sbjct: 762 RAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSK 804 >gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198] gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198] Length = 816 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/867 (43%), Positives = 529/867 (61%), Gaps = 94/867 (10%) Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85 + SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++GV Y K ARI G+V+GKY Sbjct: 17 KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76 Query: 86 HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145 HPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE RL KA+ +L D Sbjct: 77 HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136 Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205 L KDTVDF PNYD + +EP VL R PN+LVNG GIAVGMAT+IP H + E++D + + Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196 Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265 I + D + L+E ++GPDFPTG +I G+ GI++AY TGRG I +R HIEKT R+ Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIFGKQGIRDAYRTGRGRIKVRAKVHIEKTK-TRDV 255 Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325 IV+ E+P+QVNKA ++E+I+EL R+K I IA++RDESDR G RVVIELKR A ++++LN Sbjct: 256 IVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVLN 315 Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385 LY+ + +++ F + ++A+N +P+ FTL +L F+ R+ VV+RRT + L KA+ RAH Sbjct: 316 HLYKSSVMETTFGIILLAINNKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKARAH 375 Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 +L GL IA+ ++DEV+ +IR S + E A+ LM+R Sbjct: 376 ILEGLKIALDHIDEVIALIRSSQDVEIAKNALMER------------------------- 410 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 LSE+Q++AILE+RL RLTGL RD I E SL EI+ IL S +L II EL Sbjct: 411 -FGLSELQSKAILEMRLQRLTGLERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNEL 469 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 L +K++ +PR T I E ++ ED I E +VVT+SH GYVKRV L VY Q RGGKG Sbjct: 470 LEIKEKFSSPRCTIIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKG 529 Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625 + D+DF+ F+ +TH ++LF ++ G +Y KV+++P A GKA++N++ L+ Sbjct: 530 KISGNTHDDDFIQSFFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLS 589 Query: 626 QGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 E+I T F +D+S +VF TK+G V+R LS++ I G A+ LD+ D Sbjct: 590 SDEKIMATITTSDFHDDKS------LVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADD 643 Query: 683 EILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAI 740 E+++ TQ+ ++ + T G C+RF I+ +R GR + GV I AK D VI Sbjct: 644 ELVTASIITQDVKELFVATYQGMCIRFDINDVREI-GRAARGVTAIRFKAKEDSVIGATT 702 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + R + KL Sbjct: 703 I-----------------------------------------------RSENDKL----- 710 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDK 859 LTVSE+G GK+T + +R+ +R GKG+ ++ + G LV++ VND N +++++ Sbjct: 711 LTVSEQGIGKQTLAGAYRLQSRGGKGVIVMKLTA--KTGKLVSIINVNDENMDLMVLTTS 768 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTA 886 G +IRV IR A R T GV I + A Sbjct: 769 GKMIRVDTEAIREAGRNTSGVKIVNVA 795 Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++T+S +G+ KR + NR GKG + + + I + F N Sbjct: 493 VEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQSF---FVANT 549 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D I+ +++KG L + V +I A R G V + + DE++++ Sbjct: 550 HDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMA 596 >gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1] Length = 874 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/901 (41%), Positives = 549/901 (60%), Gaps = 80/901 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DEMQNS L YA++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K Y KCA Sbjct: 9 VINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKAYRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G V+G+YHPHG+A++YDAL R+AQD+S+R L++G GNFGS+DGD PAA RYTE ++ Sbjct: 69 DTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF NYD +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 AKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +I++PD L+ LME I+GPDFPTG +I+G+ GI+ AYATGRG I++R +H Sbjct: 189 GEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIMGKAGIRAAYATGRGKIILRSRTH 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G R I++ EIP+ + K +L+ I +LV++KRI + +RDESD+ G RVVIELK Sbjct: 249 FEEIKG-RNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRVVIELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A +++LN+L+ T LQ + M+AL +P+ TL +L+ ++ F+ +V+ RRT+Y Sbjct: 308 KDAMPEIVLNKLFALTQLQDTVGIIMLALVNGEPKILTLKQMLQHYLDFQVDVIQRRTRY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L G +A +DEV+ IIR S + A+ +++R + D+ L+D Sbjct: 368 DLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDV----DMSALLD 423 Query: 436 DSSYTIGS---DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + Y + + LSE Q AI+++RL +LTGL R I +EL L +I + DIL+ Sbjct: 424 RAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDILA 483 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 +R+ GII +L +++ + RRT I V G +D+ ED I ED VVT+++ GY+KR Sbjct: 484 DVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDI--EDLIPEEDCVVTLTNNGYIKR 541 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PL+ Y+ Q RGG+G +G+ R+EDFV ++FI +H +VLF S+LG +YK K + +P GS Sbjct: 542 MPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYEVPDGS 601 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +RG LIN++ L++GE+I ++ F ED+ Y+ TK G ++R+ LS + Sbjct: 602 KASRGFNLINLIPLSEGEKIAAMIKTTDFSEDK------YITIVTKKGKIKRSNLSLYKN 655 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + ++G IA+ LD DEI V I + T+ G +R + R + R++ GVR I Sbjct: 656 VRKNGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMS-RSAHGVRAI 714 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L +GD V+S+A R+ G T Sbjct: 715 KLREGDYVVSIA-----------------------RVREGAT------------------ 733 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTV+E G+GKRT +RI NR G G+ V + G + + V Sbjct: 734 ------------LLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVDDVR--GHVCGIKIV 779 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ D IILVS G +IR+ ++IR+ R KGV + + +VV+ R +E D AE Sbjct: 780 DEEDDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNEGAQVVAFTR---AEHDDNAE 836 Query: 908 S 908 + Sbjct: 837 T 837 Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 16/221 (7%) Query: 536 EDMVVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 ED +T V+ G +KR LS+Y+ R+ G G+ DE + + + + + + Sbjct: 632 EDKYITIVTKKGKIKRSNLSLYKNVRKNGLIAIGLDEGDE--IAGVRMTDGNAQIFVATR 689 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + + + G +R + + L +G+ + +I E + ++ T++ Sbjct: 690 NGMAIRIEENK---GRSMSRSAHGVRAIKLREGDYVVSIARVREGAT------LLTVTEN 740 Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R +L + NR G K+D R + ++ +E+DI+L + G +R S Sbjct: 741 GYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRILAS 800 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 IRV GR + GVR + + +G QV++ H D E++ Sbjct: 801 DIRVM-GRIAKGVRVMRVNEGAQVVAFTRAEHDDNAETEKV 840 >gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] Length = 834 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/883 (41%), Positives = 542/883 (61%), Gaps = 84/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE ++ Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++G +++NPDI + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ DE+DR G R+VI+++ Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E VV RRT++ Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E L I + DIL+ R Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++ RRT + G + ++EDED I ED++V ++H GY+KR+P+ Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY K + +P A+ Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N E+I+ ++ E++ ++ Y+ F TK G V+R +++F I +G Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ VE +++ +++ T G + F S +R GR++ GVRGI L D Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A L +DS V Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SE GFGK+TS+ ++ I R G G++ +V+ N G LV + VN ++ I+ Sbjct: 715 ------LVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--GPLVGLTTVNGDEDIM 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV+D+G +IR + + R+ GV + RV ++ ++ Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARVATIAKV 809 >gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 848 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/723 (45%), Positives = 478/723 (66%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ K AH +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE I++ EIPYQVNKA ++EKI ELVREK + ++D Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMVAL +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ S + A+ +L+ Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468 R+W + ++D++ D +G YLSE+Q AIL + L LTGL Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +++I + ++ +I + LDIL+ R+ II++EL K RR+ I D+ Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ + +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 >gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818] gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] Length = 824 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/883 (40%), Positives = 537/883 (60%), Gaps = 93/883 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+K + V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ + + Y Sbjct: 6 EDKSV-EVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPY 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 65 KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ A+ +L D+ KDTV+F PNYD + EP VL +R PN+LVNG GIAVGMAT+IP Sbjct: 125 EARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D + VIDN ++D ++E+++GPDFPTG +I G+ GI AY TGRG I +R Sbjct: 185 PHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 HIEKT ++ IV+ E+PYQVNKA ++E+I+EL +EK I IA++RDESDR+G RVV Sbjct: 245 AKVHIEKTK-TKDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ T+++S F + ++A+N +P+ F L+ +L+ F+A R+ +++R Sbjct: 304 IELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R+ + L KA+ RAH+L GL IA+ N+DE++RIIR S + E A+ L+++ Sbjct: 364 RSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AILE+RL RLTGL RD I E L +I IL Sbjct: 413 ---------------FSLSELQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S +L I+K ELL +K++ + R+T+I E ++ ED I E +VVT+SH GYVKRV Sbjct: 458 KSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEKVVVTMSHRGYVKRV 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ F+ +TH +++F ++ G +Y KV+++P Sbjct: 518 LLKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGR 577 Query: 612 QARGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A GKA++N+++L+ E+I T F +D+S +VF TK+G V+R L ++ I Sbjct: 578 TAIGKAVVNLINLSPDEKIMATITTTDFNDDKS------LVFFTKNGIVKRTNLKEYSNI 631 Query: 669 NRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G A+ LD DE+++ + ++ + T+ G C+RF I +R GR GV GI Sbjct: 632 RSVGVRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELREI-GRVGRGVTGI 690 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + + A + +D D Sbjct: 691 KFKASEDCVIAATTITSDTDK--------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +LTVSE+G GK+T + ++R+ +R+GKG+ ++ + G LV+V + Sbjct: 712 ------------LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTP--KTGKLVSVVNI 757 Query: 848 ND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ND N +++++ G +IRV IR A R T GV I + D+ Sbjct: 758 NDENMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVGNDK 800 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 118/273 (43%), Gaps = 25/273 (9%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701 N VV + G V+R L + + NR GK++ D I S + I+ T Sbjct: 501 NEKVVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTN 560 Query: 702 LGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 GQ + I AGR ++G V I+L+ +++ MA + D + D+ + + Sbjct: 561 KGQLYWLKVYKIPE-AGRTAIGKAVVNLINLSPDEKI--MATITTTDFNDDKSLVFFTKN 617 Query: 759 SAQRRLISGDTEEITSL--------KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 +R + I S+ +ND V +I +EL FI T ++G Sbjct: 618 GIVKRTNLKEYSNIRSVGVRAINLDENDELVTAHIVGSSVKEL-----FIAT--QQGMCI 670 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 R + R R G+G+ K +E + A +D D+++ VS++G + E Sbjct: 671 RFGIDELREIGRVGRGVTGIKF-KASEDCVIAATTITSDTDKLLTVSEQGIGKQTLAGEY 729 Query: 871 RIASRATKGVVIFS-TAKDERVVSVERIRESEI 902 R+ SRA KGV++ T K ++VSV I + + Sbjct: 730 RLQSRAGKGVIVMKLTPKTGKLVSVVNINDENM 762 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 13/158 (8%) Query: 746 ADYDERICYMKH-MSAQRRLISGDTEEITSLKNDSS------VEGNISEERCQELKLKEQ 798 A+ E+I Y++ + ++ +L S +E+ +K S +E + ++L E+ Sbjct: 444 AELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEK 503 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ++T+S +G+ KR + NR GKG + + +E + + F N +D I+ V++ Sbjct: 504 VVVTMSHRGYVKRVLLKTYEKQNRGGKGKVSGNT---HEDDFIESFFVANTHDTIMFVTN 560 Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 KG L + V +I A R G V + + + DE++++ Sbjct: 561 KGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKIMA 598 >gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] Length = 817 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/891 (42%), Positives = 528/891 (59%), Gaps = 87/891 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE+ + V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ N Sbjct: 2 DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG+ ++YDA R+AQD+S R L++G GNFGSVDGD AA Sbjct: 62 KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K +L D+ K+TVDF PNYDGS QEP VL ++ PN+LVNG GIAVGMAT Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEVVDGCV +ID PD L+ +M I+GPDFPTGA I+GR GI AYATGRGS+ Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSV 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R + +E + + +IVVTEIPYQVNKA ++E IAEL R + I I LRDESDR+G Sbjct: 242 KMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGL 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIEL+ + D+ILN+LY++T LQ F + M+AL P +L+ +L+ ++ + +V Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR ++ L+KA RAH+L GL IA+ ++DEV+R IR S ETA+ LM Sbjct: 362 ITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMT--------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L++ Q AIL++RL RLTGL R+ I E L I Sbjct: 413 -----------------AFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLR 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ +++ I+K ELL K RRT++ ++ ED I E MV+T++ GY+ Sbjct: 456 SVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYM 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP- 607 KR+ +VY Q +GG+G G+ +DED V L S +VLFF++ G VY+ K + +P Sbjct: 516 KRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPE 575 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G A INIL L+ GE++ ++ + + S N + AT++G V++ +L++F Sbjct: 576 ANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMN---LFMATENGLVKKTELAEFKN 632 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + R+G IA+ L D + V + I+L TKLG + F S +R GRN+ GVRGI Sbjct: 633 VRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPM-GRNTRGVRGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 SLA GD+VI A VL D Sbjct: 692 SLAPGDRVIG-ADVLAPD------------------------------------------ 708 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 CQ +LTVSE+GFGKR + ++I R GKG + ++ + G +V V V Sbjct: 709 --CQ--------VLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITP--KTGVIVGVEVV 756 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERI 897 ++ +++L++ G +IR + I I R T GV I D++V +++ I Sbjct: 757 REDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTI 807 >gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] Length = 852 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/893 (39%), Positives = 542/893 (60%), Gaps = 91/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M++SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++G +K + KCA Sbjct: 9 IQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQDWS+R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L+ D+GK+TVDF PN+D + +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EVV+ V +IDN DI+ +D L+++++GPDFPTG +ILG +GIK AY TGRG I + Sbjct: 189 REVVNAVVRLIDN-DIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTGRGKIRV 247 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + +IVVTE+PY VNKA ++EKIAEL ++K+I I DLRDE+ R+G R+ Sbjct: 248 RAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R + V+LN L+++T LQ F V +AL +P+ L +L ++ +++VV Sbjct: 308 VVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIHQKDVVT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L+KA RAH++ GL IA N+DEV+ IIR S + A+ LM+R Sbjct: 368 RRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMER---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++ Q++AI+++RL LTGL R+ + E L +I + I Sbjct: 418 ----------------FGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LLG+I++E++++ D+ R+T I DM ED I + V+T++ +GY+KR Sbjct: 462 LADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTKVGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + ++AQ RGGKG G+ ++D++ ++ + ++H ++FF++ G VY+ K + +P S Sbjct: 522 MSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEAS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG A+IN++ L E+IT ++P E E ++ Y+ AT++G V++ + D+ I + Sbjct: 582 RTSRGTAIINLIPLQPDEKITAMIPIKEYE---DDKYLFMATRNGIVKKTPIKDYENIRK 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D+++ V+ DILL TK GQC+RF + +R GR ++GV G++LA Sbjct: 639 NGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRS-TGRTTMGVIGMNLA 697 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D +I+M +A Sbjct: 698 PNDVIIAMQTASMGEA-------------------------------------------- 713 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L VS G GKRT +F NR GKG++ +++ + G LV V V ++ Sbjct: 714 ---------VLLVSSNGLGKRTRIDEFTTQNRGGKGVKCYKITE--KSGNLVGVKSVEND 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 D+++L++ +G +IR+ V+++ + R T GV + + + V S+ ++ E + + Sbjct: 763 DELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGVSVASIAKVVEDKTL 815 >gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519] gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium sticklandii] Length = 817 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/882 (40%), Positives = 535/882 (60%), Gaps = 85/882 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRILF M +G+ K Y K A Sbjct: 12 IVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLGLVPEKSYRKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G+V+GKYHPHG+ A+YDA+ ++AQD+S R L+ G GNFGS+DGD AA RYTE ++ Sbjct: 72 TVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDSAAAMRYTEAKM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK LL D+ K+TVDF NYD +EP VL ARYPN+LVNG GIAVGMAT+IP HNL Sbjct: 132 QKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D V +IDN + ++ +M+ I+GPDFPTGA I+G+ I++AY TGRG + +R + Sbjct: 192 REVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDAYMTGRGKVTVRSKAD 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + QI+VTEIPYQVNKA M+EKIA+LV++KRI I DLRDES+R G R+VIE++ Sbjct: 252 IEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDESNRDGIRIVIEVR 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + +++LN LY+++ LQ +FS+ M++L +P+ + +L ++ ++ VV RRT+Y Sbjct: 312 RDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVHYLNHQKNVVRRRTEY 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA+ N+D V++IIR S N A+ +L + Sbjct: 372 DLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFG------------- 418 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q++AIL++RL RLTGL R I E L I IL +S Sbjct: 419 -------------LSDIQSQAILDMRLQRLTGLERGKIEEEFAELMKNIAYYESILQDQS 465 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LLGIIK E+L ++++ RRT I E ++ D I E++ VT +H GY+KR+P+ Sbjct: 466 ILLGIIKDEMLKIREKHGDKRRTEITEAADEINILDTIPDEEVTVTFTHYGYIKRIPMDT 525 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+AQRRGGKG + + RD+DFV L + + H+ +LF ++ G +Y+ + +P A+G Sbjct: 526 YKAQRRGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKG 585 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E++T+ + D + N Y+V TK G +++ ++S+F + R+G IA Sbjct: 586 TNIVNLIPLEKNEKVTSFISI-RDVPAEN--YLVMCTKKGVIKKTQISEFRKSTRNGLIA 642 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE+++V+T E D ++ TK G + F +R GR ++GVR I LA D+V Sbjct: 643 ISLREDDELINVKTTDGEQDFIIVTKKGMAISFDEKQVRDM-GRAAMGVRAIRLAPDDEV 701 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++M +V D ++++ + +R N + R Q Sbjct: 702 VAMELV-----DPNKQLLVISEKGYGKRT-------------------NTKDYRLQ---- 733 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 R GKG++ +S+ + G LV V +++I++ Sbjct: 734 -------------------------TRGGKGVKTYKISE--KTGILVGAKAVYKDEEIMI 766 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ G+LIR+ VN+I I SR T GV + T ++ VV++ RI Sbjct: 767 INSDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARI 808 >gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] Length = 839 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/915 (39%), Positives = 545/915 (59%), Gaps = 95/915 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M EHI +E V + M+N Y+ YA++VI RA+PD+RDGLKPV RRIL+ M Sbjct: 1 MDEHIFDKVQE-------VDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 53 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +++ +K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R L++G GNFGSV Sbjct: 54 IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSV 113 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K + + DL KDTVDF PN+D + +EP VL +RYPN+L NG Sbjct: 114 DGDGAAAMRYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTS 173 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRT 235 GIAVGMATNIP HNL EV+ V +IDN D ++ +++I++GPDFPTG I+G+ Sbjct: 174 GIAVGMATNIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTIIGKL 233 Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295 GI+ AY TGR I +R V++IE + + +IVVTE+PY VNKA ++EKIAELVR+K+I Sbjct: 234 GIEEAYRTGRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDG 293 Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 I DLRDESDR+G R+ IEL+R + +++LNQLY++T LQ F V M+AL +P+ L Sbjct: 294 ITDLRDESDREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQPKVLNLY 353 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +LK ++ +EEVV RRTK+ LNKA +RAH+L GL IA+ N+D V+ IIR S N + A+ Sbjct: 354 DMLKYYLLHQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKE 413 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L+ LSE Q +AI+++RL LTGL R + Sbjct: 414 SLI--------------------------AEFALSEAQAQAIVDMRLRALTGLERSKLEA 447 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL L +IKE IL+ + LLG+IK E+ + D+ RRT I D+ ED I Sbjct: 448 ELKELHEKIKEYKAILADKKLLLGVIKNEISEIADKYGDDRRTSIGYDEYDISMEDLIPD 507 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E V+ ++LGYVKR+ +++Q RGGKG G+ D+D++ DLF+ ++H + FF++ Sbjct: 508 EPCVIARTNLGYVKRMTPDNFKSQHRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNT 567 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G YK K + +P S +RG A+IN+L L GE IT ++P D + + Y+ ATK G Sbjct: 568 GRAYKLKAYEIPEASRTSRGTAIINLLQLAPGETITAVVPVKID-TLQDTDYLFMATKKG 626 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++ + +F I ++G A+ L DE++ V+ + +IL+ T LGQC+RF + +R Sbjct: 627 IVKKTPVKEFANIRKTGIQAINLREDDELIEVKLTDDQAEILMVTMLGQCIRFKETDVRP 686 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR+++GV G+SL D+V+ + + S Q GDT Sbjct: 687 -TGRSAMGVIGMSLMDEDEVVGVQV------------------STQ-----GDT------ 716 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L VSE G GKRT ++ + +R GKG++ +++ Sbjct: 717 ------------------------MLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITE- 751 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G +V V+D+ +++L++ +G +IR+ ++I R T GV + + + +V ++ Sbjct: 752 -KTGNVVGAKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIA 810 Query: 896 RIRESEIVDEAESTE 910 ++R+ ++ + E Sbjct: 811 KVRKQPADEDGKDAE 825 >gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 827 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/891 (40%), Positives = 550/891 (61%), Gaps = 71/891 (7%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K I V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + EWNK Y K Sbjct: 6 KEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG++A+YD++ RMAQ +SLR LI+GQGNFGS+DGDP AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + AH +L +L K+T+DF NYDG+ + P +L + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++GC+A + NP I L LM I GPDFPT +I G+ GIK AY TG+G I++R Sbjct: 186 NLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKIIVRSK 245 Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +IE +E +++ E+PYQVNK+ ++EKIA LV+EK+I I ++RDESD+ G R+VI Sbjct: 246 YNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMRIVI 305 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ++K+ + +ILNQLY TSLQ+ F +NMVAL+ KP+ L ILK F+ R++++ R+ Sbjct: 306 DIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKIIKRK 365 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + L K+ + H+L G AIA+ N++ ++ +I+ S N A+++L + +W Sbjct: 366 CLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKK-------- 417 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 +++ + + Y S Q+ AIL ++L +LT L + I E N L + + ILS Sbjct: 418 ---ENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILS 474 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +++ L I++EL +K + R+T+I+ + ++ ED IV+E +VVT+S+ GYVK P Sbjct: 475 NKNILEKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYVKYQP 534 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +S Y AQ+RGG+G+S ++ED++T+L + ++H ++L FSS G +Y KV++LP S Sbjct: 535 ISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPETSRN 594 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGK ++N+L L ERITTI+P + +SS N + AT G V++ L F + SG Sbjct: 595 ARGKPIVNLLPLTSKERITTILPISKYKSSIN---IFMATALGFVKKTSLIQFKKPRNSG 651 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L D+++ V T N+I + T G+ V+F IR GR + G+RG+ + Sbjct: 652 IIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKM-GRTASGIRGMKITNN 710 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+++S+ L+ ++I Sbjct: 711 DRLVSL-------------------------LVPNKKDDI-------------------- 725 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 I+T + G KRT+ F I +R+ KG+ + V++ N G ++ V NDQ Sbjct: 726 ------LIVTANGYG--KRTNINQFPIKSRATKGVLSIRVTQKN--GVVIGAIQVKQNDQ 775 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 I+++++ GTL+R V+EI I R T+GV++ T K E+VV ++++ I+ Sbjct: 776 IMIITNAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLSNKPII 826 >gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 853 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/893 (40%), Positives = 540/893 (60%), Gaps = 95/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 9 VHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 E++ V +IDN + L+ +MEI++GPDFPTGA ILGR I+ AY TGR I + Sbjct: 189 REIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRTGRAKIKV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + + +I+VTE+PY VNKA ++EKIA+LV+EK+I I + DES+R+G R+ Sbjct: 249 RAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L ++ +EEVV Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEYLKHQEEVVR 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ ++DEV+RIIR S N A+ +LM+R Sbjct: 369 RRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q++AI+++RL LTGL R+ + NE L +I+E I Sbjct: 419 ----------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LL +IK+E+ + D+ RRT I D+ ED I ED V+ ++HLGY+KR Sbjct: 463 LADVKKLLTVIKEEIQIIADKYGDDRRTAIGYD-DDVSMEDLIPDEDTVIAMTHLGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ +ED++ DL + + H ++FF++ G VY+ K + +P Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAG 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A+IN+L L E+IT I+P E +N + Y+ AT++G V++ + ++ + Sbjct: 582 RTARGTAIINLLQLQPDEKITAIIPMRE----YNEDKYLFMATRNGMVKKTPMVEYEHVR 637 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++ V+ DI L T+ G C+RF + +RV GR S+GV G+ Sbjct: 638 KNGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRV-TGRVSMGVIGMRF 696 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+VI M Sbjct: 697 EEDDEVIGM--------------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +++ + + +L VSE G GKRT +F NR GKG+ ++ + G +V VND Sbjct: 706 --QMESQGESLLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTE--KTGNIVGAKLVND 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900 +I+L++ +G +IR+ V++I I R T GV + + + D +V S+ ++RES Sbjct: 762 GREIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIKVASIAKVRES 814 >gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] Length = 852 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/896 (41%), Positives = 541/896 (60%), Gaps = 123/896 (13%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Y K ARI Sbjct: 14 IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD AA RYTE R+ Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTEARMTIL 133 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG GIAVGMATNIP H+L E+ Sbjct: 134 AEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 193 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDG + ++DN + L+ LM+ I+GPDFPT +I G+ GI +AY TGRG I IR +HIEK Sbjct: 194 VDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIRAKTHIEK 253 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I IA++RDESDR+G RVVIELKR A Sbjct: 254 RA-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVVIELKRDA 312 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ R+ V++RRT Y L Sbjct: 313 MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRTIYELQ 372 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 373 KARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK------------------ 414 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q AIL+++L RLTGL R+ I NEL L EI +IL S + L Sbjct: 415 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLE 466 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +I++EL ++ + D PR T+I + D++ ED I E+MVVT++H GY+KRVP Y Sbjct: 467 DLIREELKEIRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEK 526 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV+++P GS A+GKA+ Sbjct: 527 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAV 586 Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +N+++L E+I I+P F E +S + F TK+G V+R LS++ I G A Sbjct: 587 VNLINLQAEEKIMAIIPTSDFAESKS------LCFFTKNGIVKRTNLSEYQNIRSVGVRA 640 Query: 676 MKLDSRDEILSV--------------------ETCTQEN-------DILLTTKLGQCVRF 708 + LD DE+++ E ++EN + TK G C++F Sbjct: 641 INLDENDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFAVTKRGMCIKF 700 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P++ +R GR S GV I + + + A+V+ D Sbjct: 701 PLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------------- 736 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI- 827 EQ +L+VS KG GKRT++ ++R+ +R GKG+ Sbjct: 737 ----------------------------EQEVLSVSAKGIGKRTNAGEYRLQSRGGKGVI 768 Query: 828 --RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + TD +K L++V V+++ ++ ++ G +IRV ++ IR A R T GV+ Sbjct: 769 CMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +DKG L + V +I SR KG V + + +E+++++ Sbjct: 561 TDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] Length = 819 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/879 (40%), Positives = 538/879 (61%), Gaps = 86/879 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ +K + K ARI GE Sbjct: 9 IEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKKSARIVGE 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+Y+ + RMAQD++ R LI+G GNFGS+DGD AA RYTE R+ K Sbjct: 69 VLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEARMAKITS 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL D+ K+T+D+R N+D S EP VL A+ PN+L+NG GIAVGMATNIP HNLGE++D Sbjct: 129 ELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPHNLGELLD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+I+N +I + LME + GPDFPTG +I G GI AY TGRG + +RG IE+ Sbjct: 189 GVLALIENKEITPEELMEYVTGPDFPTGGIIDGTKGIYEAYTTGRGRVRVRGKVDIEELK 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGAS 319 + I++TEIP+QVNKA ++EKIAELV+EK+I I DLRDES R+G R+V+ELKR Sbjct: 249 NGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVVELKRDEE 308 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 +++LN++Y+YT LQ+ F + ++AL P+ L IL ++ R +V+ RRTKY L K Sbjct: 309 PEIVLNKIYKYTELQNTFGIILLALVDNMPKVLNLKEILSHYINHRFDVITRRTKYDLEK 368 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 + +RAH+L G +A+ N+D ++ IIR S + TAR L+++ Y Sbjct: 369 SENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEK------------------Y 410 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 + S++Q R+IL+++L RLTGL R+ + NE +L IKE DILS+ R+ Sbjct: 411 S--------FSDIQARSILDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYD 462 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 IIK++ +K++ RRT+I E LD+ ED I E ++VT+++ GYVKR+ L Y+AQ Sbjct: 463 IIKEDCEELKEKYSDERRTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMNLDKYKAQ 522 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 +RGGKG S + DF+ +++ S +++ F+ G VY KV+ +P S Q+RGK + Sbjct: 523 KRGGKGVSTQNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIA 582 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+++L + E++ +I+ E + + ++F TK G V++ LS+F +NRSG A+KL Sbjct: 583 NLINLQENEKVKSIIKTREFSDTQD---LLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLK 639 Query: 680 SRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 D+++ V ND + + TK G ++FP R GR ++GVRGI+L K D V+S Sbjct: 640 DGDDLIFVGLVESPNDQVFIATKNGYSIKFPHENARNM-GRATIGVRGINLRKDDDVVSA 698 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I+ D Sbjct: 699 VIIKRDDTT--------------------------------------------------- 707 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILTV+E G+GKRT ++ + +RSGKG+ ++ + G +V V V + ++++ ++ Sbjct: 708 -ILTVTENGYGKRTREDEYPLQSRSGKGV--INLRCNEKTGVVVEVTSVTEEEELMAITS 764 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +IR P + I + RAT+GV I +DE++VS+ ++ Sbjct: 765 NGIVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKV 803 >gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464] Length = 826 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/880 (41%), Positives = 547/880 (62%), Gaps = 93/880 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEF-DSN 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GVRGI Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREI-GRTTRGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+V+ D++ Sbjct: 694 LNENDFVVG-AVVISDDSNK---------------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V V+ Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVISVD 759 Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 DENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 799 Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L R+ V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4] Length = 840 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/900 (40%), Positives = 545/900 (60%), Gaps = 95/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M ++ +K + K A Sbjct: 9 IHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS+R +L++G GNFGS+DGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNGG GIAVGMATNIP HNL Sbjct: 129 SKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +IDN ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + I+VTE+PY VNKA ++EKIAELV+ K+I I + DES+R+G R+ Sbjct: 249 RAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREGIRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+V+LNQL ++T LQ F V M+AL +P+ ++ +L+ ++ +++VV Sbjct: 309 NIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNEPKVLNILQMLEYYLDHQKDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL A+ ++DEV+RIIR S N A+R LM+R Sbjct: 369 RRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMER---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++ Q +AI+++RL LTGL R+ + NE L +I E I Sbjct: 419 ----------------FELTDPQAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549 L+ ++LLG+IK+E+L + ++ RRT+I G DM ED I +D V+ +++LGY+K Sbjct: 463 LADENKLLGVIKKEILVISEKYGDDRRTKI--GFEDDMSVEDLISDDDTVIAMTNLGYIK 520 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ + +++Q RGGKG G+ DEDF+ DL + + H ++FF++ G Y+ K + +P Sbjct: 521 RMSVDNFKSQNRGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEA 580 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A++N+L L GE++T +P E + ++ Y+ ATK G V++ ++ ++ + Sbjct: 581 GRTARGTAIVNLLQLQPGEKVTAAIPMREID---DDKYLFMATKGGMVKKTRMCEYSNMR 637 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++ V+ DI L TK G +RF + R+ GR S GV G+ L Sbjct: 638 KTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKETDARI-TGRVSYGVIGMKL 696 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+VI M M++Q Sbjct: 697 DEGDEVIGM------------------QMASQG--------------------------- 711 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +++L SEKG+GKRT +F++ R GKG+ +V++ + G LV + ++D Sbjct: 712 --------EYMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTE--KTGNLVGMKLLDD 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVDEAE 907 I+L++++G LIR+ V++I I R T GV + S D RV S+ ++RES DE + Sbjct: 762 GRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIAKVRESSRQDEED 821 >gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806] Length = 850 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/900 (40%), Positives = 542/900 (60%), Gaps = 63/900 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A + LL D+ +TVDF N+DGS QEPVVL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG VA+I NPD+ L I GPDFPTG ILGR GI+ AY TGRGSI +RGV+ Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DR+ I++TE+PYQ NKAA++EKIA+LV +++I I+D+RDESDR G RV Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQS F NM+AL +P TL L+ F+ FR EV+ Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + + +A+ L+Q Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQ----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L + I+ E L +I + DI Sbjct: 417 ---------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + R+ II++EL +K TPRR+ I + ++ + D I E ++ V+ GY+KR Sbjct: 462 LAKKERIDSIIEEELQQIKTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + +Q R +G++G M+++D + H SVLFF+ G VY + +P GS Sbjct: 522 MPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + +GE+IT+++ E S +N Y++ T+ G +++ L+ F I Sbjct: 582 RTARGVPIVQLLEIPKGEKITSVVAV--SEFSEDN-YLIMLTQKGFIKKTALAAFSNIRS 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D++ V +E+ +++ ++ G + F + ++ + GR + GV+ + L Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD++ISM I+ +I S Q E + N+ Sbjct: 699 RSGDELISMDIL-------PSQIVAQIAESNQEETEDESEEINPEVANNGP--------- 742 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L ++ G GKR R+ NR+G G+R K N+ L A+ VN Sbjct: 743 ---------WVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHVVNP 791 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 N++ ++++++G +IR V+ I SR+ G+ + +D+ + +V + S+ +E+E + Sbjct: 792 NEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSD-AEESEDS 850 >gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449] gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449] Length = 824 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/898 (40%), Positives = 536/898 (59%), Gaps = 95/898 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ + + Y K ARI Sbjct: 12 VKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPRRPYKKSARIV 71 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R+ A Sbjct: 72 GDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTEARMTSA 131 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + +L D+ KDTV+F PNYD + EP VL R+PN+LVNG GIAVGMAT+IP H + E+ Sbjct: 132 SEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMATSIPPHRIDEI 191 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + VID D++ L++I++GPDFPTG +I G+ GI AY TGRG I +R HIEK Sbjct: 192 IDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIYGKAGILEAYRTGRGRIRVRAKVHIEK 251 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 T ++ IV+ E+PYQVNKA ++E+I+EL +EK I I+++RDESDR+G RVVIELKR A Sbjct: 252 TKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREGIRVVIELKRDA 310 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++++LN L++ T+++S F + ++A+N +P+ F L+ +L+ F+A R+ +++RR+ + L Sbjct: 311 MSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRRSIFELE 370 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA+ RAH+L GL IA+ N+DEV++ IR S + + A+ L+ + Sbjct: 371 KAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSK------------------ 412 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q +AILE+RL RLTGL RD I E L +I IL S +L Sbjct: 413 --------FKLSELQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLK 464 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+ELL +K++ T RRT+I E ++ ED I E +VVT+SH GYVKRV L Y Sbjct: 465 SIVKEELLEIKEKFSTKRRTQIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEK 524 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGGKG+ D+DF+ F+ +TH +++F ++ G +Y KV+++P A GKA+ Sbjct: 525 QNRGGKGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAV 584 Query: 619 INILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +N+++L E+I T F ED+S +VF TK+G V+R L ++ I G A Sbjct: 585 VNLINLQADEKIMATITTTDFNEDKS------LVFFTKNGVVKRTNLKEYGNIRSIGVRA 638 Query: 676 MKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + LD DE+++ ++ + T G C+RF + +R GR S GV GI + Sbjct: 639 INLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELREI-GRVSRGVTGIKFKASED 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 + A + D D Sbjct: 698 CVIAATTIANDTDK---------------------------------------------- 711 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQI 853 +LTVSE+G GK+T + ++R+ +R+GKG+ ++ G LV+V +ND N + Sbjct: 712 -----LLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTP--RTGKLVSVVNINDENMDL 764 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV---VSVERIRESEIVDEAES 908 ++++ G +IRV IR A R T GV I + D+ V + +E +I DE S Sbjct: 765 MVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVGDDKVAYANVCPKEPKEEDINDEEGS 822 >gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38] gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38] Length = 827 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/879 (41%), Positives = 541/879 (61%), Gaps = 91/879 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V++NP+ +LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ SP+PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLT L RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL +K++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKIELLEIKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F Sbjct: 581 IAMGKAVVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGSNR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G A+ LD DE++S + + +L+ + LG ++FP+ +R GRN+ GV GI Sbjct: 636 SCGVRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+V+ D + Sbjct: 695 LNENDFVVG-AVVISDDGNK---------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKG+ +++ + G LV V V+ Sbjct: 714 -----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVD 760 Query: 849 D-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 D N +++++ +IRV + +IR R GV + +TA Sbjct: 761 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA 799 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKIMA 601 >gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100] gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100] Length = 858 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/912 (40%), Positives = 548/912 (60%), Gaps = 122/912 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I + D + I ++ I +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFTKDSD----IENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R ++GQGNFGS+DG Sbjct: 58 LGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL AR PN+L+NG GI Sbjct: 118 DGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + +IDN + L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IA+L +EK+I IA++RDE Sbjct: 238 TGRGRVKVRAKTHIEKRA-NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR+G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+LI +LK F+ Sbjct: 297 SDREGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLKLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+ TA+ LMQ+ Sbjct: 357 NHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q+ AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQSNAILDMKLGRLTGLEREKIDNELKELLA 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI+ +IL S + L +IK EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIERLDEILKSEALLENLIKDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ + F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILS-VETCTQEND------------------------- 695 LS++ I G A+ LD DE+++ + EN+ Sbjct: 627 LSEYQNIRSVGVKAINLDENDELVTAIIVARDENEMSNQALEDEENLENEVLENNEELEN 686 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + TK G C++FP++ +R GR S GV I + + + A+V+ DA Sbjct: 687 VAVGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDA--- 742 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 Q IL+VS KG G Sbjct: 743 ------------------------------------------------QEILSVSAKGIG 754 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT + ++R+ +R GKG+ ++ + L++V V+++ ++ ++ G +IRV + Sbjct: 755 KRTDAGEYRLQSRGGKGVICMKLNA--KTKDLISVVIVDESMDLMALTTSGKMIRVDMQS 812 Query: 870 IRIASRATKGVV 881 IR A R T GV+ Sbjct: 813 IRKAGRNTSGVI 824 >gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] Length = 937 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/732 (45%), Positives = 488/732 (66%), Gaps = 21/732 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++ ++NK Y K A Sbjct: 6 VSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ R+AQ +S+R +LI+GQGNFGSVD DP AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 QK H +L DL KDTVD+ PNYDGS Q P V+ AR PN+LVNG GIAVGMATN+ HNL Sbjct: 126 QKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMAPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++ C+A D+P I + LM+ I GPDFPTG +I GR+GI +AY TG+G + +RG H Sbjct: 186 TEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIYGRSGIVDAYRTGKGRLHLRGKYH 245 Query: 256 IEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE S +RE+IV TEIPYQ NKA ++EKIAELVR+K++ I+++RDESD+ G R+ Sbjct: 246 IEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKDGMRI 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+L+RG +A+VI+N L+ T L+S FS+NMVAL+ +P+ TL ++ AFV R+EVV Sbjct: 306 AIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQPKIMTLRDLIAAFVRHRQEVVT 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA+ R H+L GL IA+AN+D ++ I+ S N + AR L+ +W + + + Sbjct: 366 RRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGGVIAM 425 Query: 431 I----------DLID----DSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRN 475 + D+I+ + Y + D Y LS Q AIL+++L RLTGL +D ++ Sbjct: 426 LEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQDKLQQ 485 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E + I + IL + +L+ +IK EL+ ++++ R+T+IV+ D D I Sbjct: 486 EFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFSRADLISE 545 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 + +V+TVS GY K P+S Y AQ+RGGKG+S M+ +D + + + STH +V+ F+ Sbjct: 546 QTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNNVMIFTDR 605 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G V+ +V+ +PI S +RG+ ++N+++L+ E++T I+P ED +N YV FAT G Sbjct: 606 GRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYVFFATASG 665 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V+R +LS F + +G A++L+ D ++ V + DI+L + G+ +RF S IR Sbjct: 666 MVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRFNESKIRA 725 Query: 716 FAGRNSVGVRGI 727 GR + GVRG+ Sbjct: 726 M-GRTAKGVRGM 736 >gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485] gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485] Length = 824 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/882 (41%), Positives = 534/882 (60%), Gaps = 89/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSIT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM MG N+ Y K A Sbjct: 6 VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GK HPHG++A+YDALARMAQ WS+R LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL ++ KDTVDFR N+DGS++EPVVL A PN+L+NG GIAVGMATNIP HNL Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ D +ID+P+ ++ LMEII GPDFPT +ILG GI AY+TGRG I +R +H Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ IVVTE+PYQVNKA + E+IAELV++++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILLK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F +NM+AL +G +P TL +L+ ++ R+EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR+RAH+L GL IA+ NLD V++ IR S E+AR LM+ Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMR-------------- 411 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E Q +AILEL+L RL L R I E + I E DIL++ Sbjct: 412 ------------NFSLTERQAQAILELQLRRLAALERQKIEEEYREVIKLIAELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +IK++L +K++ PRRTRI+ + ++ DED I +++T++ GY+KR Sbjct: 460 PRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR QRRGG+G G++ R++D V L ++ ++LFF+ G VY+ K +P S Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE++T+++ E ++ Y+V AT G ++R +L ++ Q+ +G Sbjct: 580 AKGLPLVNLVSLEPGEQVTSMLAVRE----FDAEYLVMATVRGKIKRTQLREYSQVRSNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ D + V DILLTT GQ +RF S +R GR + GV GI+LA+G Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLAEG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM +++EE Sbjct: 695 DRVVSM---------------------------------------------DLAEEGAD- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L V+ +G GKRT+ ++ + R+ G+ + NE + A V ++ Sbjct: 709 -------LLVVTARGIGKRTALSEYPLKGRATGGV--ITIKLRNETDEVAAAAVVREHSL 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G ++R +EI RAT+GV + + A +RV ++ Sbjct: 760 LTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDRVAAL 801 Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 V G +S+E +L + ++T++++G+ KR +R R G+GI+ + + + Sbjct: 490 VTGEVSDE---DLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRH 546 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L+ N D ++ +D+G + ++ +E+ +SR KG V + S E+V S+ + Sbjct: 547 LLTC---NSLDNLLFFTDRGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQVTSMLAV 603 Query: 898 RE 899 RE Sbjct: 604 RE 605 >gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] Length = 852 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/896 (41%), Positives = 541/896 (60%), Gaps = 123/896 (13%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Y K ARI Sbjct: 14 IDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 73 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD AA RYTE R+ Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTEARMTIL 133 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG GIAVGMATNIP H+L E+ Sbjct: 134 AEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 193 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 VDG + ++DN + L+ +M+ I+GPDFPT +I G+ GI +AY TGRG I IR +HIEK Sbjct: 194 VDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIYGKKGIIDAYRTGRGRIKIRAKTHIEK 253 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I IA++RDESDR+G RVVIELKR A Sbjct: 254 RA-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVVIELKRDA 312 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 ++++LN L++ T+++S F V M+A++ +P+ F+LI +L F+ R+ V++RRT Y L Sbjct: 313 MSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRTIYELQ 372 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 373 KARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK------------------ 414 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE+Q AIL+++L RLTGL R+ I NEL L EI +IL S + L Sbjct: 415 --------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLE 466 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +I++EL +K + D PR T+I + D++ ED I E+MVVT++H GY+KRVP Y Sbjct: 467 DLIREELKEIKAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEK 526 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV+++P GS A+GKA+ Sbjct: 527 QKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEGSRTAKGKAV 586 Query: 619 INILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +N+++L E+I I+P F E +S + F TK+G V+R LS++ I G A Sbjct: 587 VNLINLQAEEKIMAIIPTSDFAESKS------LCFFTKNGIVKRTNLSEYQNIRSVGVRA 640 Query: 676 MKLDSRDEILSV--------------------ETCTQEN-------DILLTTKLGQCVRF 708 + LD DE+++ E ++EN + TK G C++F Sbjct: 641 INLDENDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFAVTKRGMCIKF 700 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 P++ +R GR S GV I + + + A+V+ D Sbjct: 701 PLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND----------------------- 736 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI- 827 EQ +L+VS KG GKRT++ ++R+ +R GKG+ Sbjct: 737 ----------------------------EQEVLSVSVKGIGKRTNAGEYRLQSRGGKGVI 768 Query: 828 --RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 + TD +K L++V V+++ ++ ++ G +IRV ++ IR A R T GV+ Sbjct: 769 CMKLTDKTK-----ELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNTSGVI 819 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +DKG L + V +I SR KG V + + +E+++++ Sbjct: 561 TDKGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT] gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT] Length = 809 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/887 (41%), Positives = 533/887 (60%), Gaps = 100/887 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +G++ N Y K ARI Sbjct: 9 INIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++YDA+ RMAQ +S R L++GQGNFGSVD DP AA RYTE RL + Sbjct: 69 GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEARLAQI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 129 AEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +IDNPD +D LM+ + GPDFPTG ILG GIK+AYATG+G IVI+ +HI + Sbjct: 189 CQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 R+ I VTEIPYQVNKA ++ KIAELV+E+++ I+DLRDESDRQG RVVIELKR A Sbjct: 249 VE-TRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIELKRDA 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +LN LY++T++++ F VNM+AL +P+ +L +LK F+ FR ++ RR+++ L Sbjct: 308 EPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFELK 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 A+DRAH+L GL A+ +D ++ IIR S N + AR K+LI D Sbjct: 368 AAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAAR-------------KNLIAEFD--- 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 S VQ +AIL+L+L RL L R I +E L I D+LS ++ Sbjct: 412 ----------FSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIY 461 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++K++ +K PR T I +G+++ ED + D++VT+S G++KRVP +V+R Sbjct: 462 ALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFR 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGK 616 Q RGG G G+ R+ D V L + TH ++LFF++ G V+ + + +P S + A+G Sbjct: 522 LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGT 581 Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 A++N++ + Q ERIT I+ FP D +++ AT G +++ L +F + SG Sbjct: 582 AIVNLIPVTQDERITAILDLKSFPADH------FLLMATNKGEIKKTSLQEFTAVRSSGL 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IAM L + DE+++ +E DILL T+LGQ +RFP+S +R + R S GV+ I L+ D Sbjct: 636 IAMDLTASDELVAAVETIEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSMED 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+SM D + EG + Sbjct: 695 EVVSM---------------------------------------DVAQEGTM-------- 707 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++TV+E G GK T+ ++ +R+G G+ + +++ G +VA V+ DQ+ Sbjct: 708 ------VITVTENGAGKLTAIEEYPQQHRAGSGV--INFKVVDKTGEVVASKVVSVTDQM 759 Query: 854 ILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSV 894 +L+S G + R V E I I RAT+GV + + +RVV+V Sbjct: 760 MLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806 Score = 45.8 bits (107), Expect = 0.035, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + F+L + KG K+TS +F SG + A D++ +E LVA + I+L Sbjct: 607 DHFLLMATNKGEIKKTSLQEFTAVRSSG--LIAMDLTASDE---LVAAVETIEEKDILLA 661 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + G IR PV+E+R + RA+ GV + ++ VVS++ +E +V Sbjct: 662 TRLGQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDVAQEGTMV 708 >gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 826 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/905 (41%), Positives = 543/905 (60%), Gaps = 106/905 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I +EM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M + G+ KKY KCA Sbjct: 4 VLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ KYHPHG+ A+YDAL R+AQD+++R LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 64 GVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TV F PN+D + QEP+VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 124 TKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+VD + +++NP I ++ L+E ++GPDFPTG I G GI++ Y TGRG I IR Sbjct: 184 NEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRAKVK 243 Query: 256 IEK-TSGD-----------------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 IE+ T G +E+I++TEIPYQVNKA ++EKIAELVREK+I I Sbjct: 244 IERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEGIT 303 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 ++RDES+R+G RVV+ELK+G +V+LN LY++T +++ F ++A+ +P L Sbjct: 304 EIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNLKEA 363 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L F+ R++VV++RT + L KA +AH+L+GL IAV NLDEV+ IIR S NPE A+ +L Sbjct: 364 LWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAKMKL 423 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M R L+E+Q +AIL++RL RLTGL R+ I + Sbjct: 424 MNR--------------------------FPLTEIQAQAILDMRLQRLTGLEREKIIQDY 457 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 ++ EI+ IL S + IIK EL+ +K + R+T IV ++ ED I +ED Sbjct: 458 ETILKEIERLKAILESEELVRNIIKDELIEIKQKYGDERKTEIVTETKEINIEDLITQED 517 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 MV+T++HLGY+KR LS YR+Q+RGGKG + + +D++ + I STH ++FFS+ G Sbjct: 518 MVITLTHLGYIKRTSLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGR 577 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY KV+++P ++GKA++N+L L +GE+ITT + + E Y++ TK G V Sbjct: 578 VYCLKVYQIPEAGRVSKGKAIVNLLPLQEGEKITTALVCKDIEEG----YLMMFTKKGFV 633 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L +F I + G IA+ L+ DE++SV T N +++ TK+G VRF +R Sbjct: 634 KKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPM- 692 Query: 718 GRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GV GI ++ D+V+S +V ++ + TE+ K Sbjct: 693 GRTARGVIGIRFSEPEDEVVSADVV------------------SEGSFVLTITEKGIGKK 734 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 I E R Q +G T + ++S ++G + + V + + Sbjct: 735 TP------IEEYRLQ-------------HRG---GTGVKNIKLSLKTGNVVSSLQVKEDD 772 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 EI II S K +IR+ V++IR RAT GV + + D+ VVS+ R Sbjct: 773 EI--------------IICSSSK--MIRLKVSQIRPQGRATTGVRLIDLSADDTVVSMGR 816 Query: 897 IRESE 901 I E E Sbjct: 817 ILEGE 821 Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 10/116 (8%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 C++++ E +++ ++KGF K+TS +F+ N KG+ A D+ + +E L++V Sbjct: 616 CKDIE--EGYLMMFTKKGFVKKTSLEEFK--NIRQKGVIAIDLEEGDE---LISVRKTTG 668 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGV--VIFSTAKDERVVSVERIRESEIV 903 N+Q+I+ + G +R ++R R +GV + FS +DE VVS + + E V Sbjct: 669 NNQLIIATKMGMAVRFSEIDVRPMGRTARGVIGIRFSEPEDE-VVSADVVSEGSFV 723 >gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] Length = 850 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/901 (40%), Positives = 544/901 (60%), Gaps = 66/901 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 VVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI G GNFGS+D DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A + LL D+ +TVDF N+DGS QEPVVL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 HTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG VA+I NPD+ L I GPDFPTG ILGR GI+ AY TGRGSI +RGV+ Sbjct: 188 LAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DR+ I++TE+PYQ NKAA++EKIA+LV +++I I+D+RDESDR G RV Sbjct: 248 TIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDGIRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQS F NM+AL +P TL L+ F+ FR EV+ Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVEVIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + + +A+ L+Q Sbjct: 368 RRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQ----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L + I+ E L +I + DI Sbjct: 417 ---------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + R+ II++EL +K TPRRT I + ++ + D I E ++ V+ GY+KR Sbjct: 462 LAKKERIDSIIEEELQQIKTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + +Q R +G++G M+++D + H SVLFF+ G VY + +P GS Sbjct: 522 MPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTGS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + +GE+IT+++ E S +N Y++ T+ G +++ L+ F I Sbjct: 582 RTARGVPIVQLLEIPKGEKITSVVAV--SEFSEDN-YLIMLTQKGFIKKTALAAFSNIRS 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D++ V +E+ +++ ++ G + F + ++ + GR + GV+ + L Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD++ISM I+ + AQ + + E S + + V N Sbjct: 699 RSGDELISMDIL-------------PSQIVAQIAESNEEETEDESEEINPEVANN----- 740 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L ++ G GKR R+ NR+G G+R K N+ L A+ VN Sbjct: 741 -------GPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKND--KLAALHVVNP 791 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 +++ ++++++G +IR V+ I SR+ G+ + +D+ + +V + S +AE + Sbjct: 792 HEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPS----DAEES 847 Query: 910 E 910 E Sbjct: 848 E 848 >gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6] gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6] Length = 797 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/879 (40%), Positives = 529/879 (60%), Gaps = 88/879 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V+IT+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+ ++ Y K AR+ Sbjct: 6 VNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSARVV 65 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG+AAIY+ + RMAQ +S+R LI+GQGNFGS+DGDP AA RYTE RL K Sbjct: 66 GDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLSKI 125 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ K+TVDF PNYDGS +EP VL + PN+L+NG GIAVGMATNIP HNL E+ Sbjct: 126 AEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLNEL 185 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + +IDNP + LM + GPDFPTG I+GR GI++AY TG+GSI+++ S IE+ Sbjct: 186 AGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSEIEE 245 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 +I+ +E+PYQVNKA ++E +AE+V+ R+ I+DLRDESD++G R+V+++K G Sbjct: 246 -GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKTGF 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+V+LNQL+++T+LQ+ + +N + L P +L L+ ++ +R VV RRT++ L+ Sbjct: 305 NANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRTRFELD 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 A RAH+L GL IA+ N+DEV+RII+ +P P AR L++ Sbjct: 365 AAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIE------------------- 405 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLTGL ++ I +E L I ILSS +L Sbjct: 406 -------AFLLSEEQAKAILDMRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLEIL 458 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK EL + + RRT+I+E ++ +ED I E++ VT++ GY+KR P++ YR Sbjct: 459 SIIKDELTELISKYGDERRTQIIEADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRM 518 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGG+G G + E+FVTD+ ST +LFF+ G + KV+ +P ARGK++ Sbjct: 519 QRRGGRGVIGAETKTEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGKSI 578 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L L ERI +P S+ Y+V T+ GN+ + L F + G A+ L Sbjct: 579 VNLLQLEPDERIAGAIPV----KSFQAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAVNL 634 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 D ++S + E ++L+ TK G+ +RF +R + R ++GV+ ISL GD++ISM Sbjct: 635 KG-DSLVSAKLTNGEKELLVATKFGKAIRFKEGDVRA-SNRGTMGVKAISLNMGDELISM 692 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 ++ SG T Sbjct: 693 DVIEPG---------------------SGST----------------------------- 702 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +LTV+ +G+GKRT ++ R GKG++ D K G + V++ D++++ + Sbjct: 703 -LLTVTNQGYGKRTELEEYPQQRRGGKGVKNIDARK----GYVCCTTTVSEEDELLVTTR 757 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +IR+P ++IR+ R+T+GV I + + V ++ RI Sbjct: 758 DGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARI 796 >gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B'] Length = 874 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/898 (39%), Positives = 539/898 (60%), Gaps = 101/898 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I DEM+N Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ + +K+Y K A Sbjct: 9 IIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+A+IYDA+ R+AQ+++ R L++G GNFG+VDGD AA RYTE R+ Sbjct: 69 RIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++L D+ K+TVDFRPN+D S +EP VL ARYPN+LVNG GIAVGMATNIP HN+ Sbjct: 129 SKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPHNM 188 Query: 196 GEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 GEV+ + +IDN + + + LMEI+ GPDFPTG ILGR GI+ AY TG+ Sbjct: 189 GEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQAYRTGK 248 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + IR + IE+ S + I++TEIPYQVNK+ ++EKIAELV+ K++ I +RDESDR Sbjct: 249 GKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDESDR 308 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIEL+R +A++ILNQLY+++ LQ FS+NM+AL +P F L +L+A++ + Sbjct: 309 DGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLEAYLDHQ 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVA--NLDEVVRIIRFSPNPETARRELMQRSWN 423 ++V+ RRT++ L+KA+ RAH++ G I + +D V+ +IR S A+ +L+++ Sbjct: 369 KQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIEK--- 425 Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 IG LSE+Q +AI+++RL LTGL D + E N L + Sbjct: 426 -----------------IG------LSEIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDK 462 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVT 541 I +L +LL +IK+EL+ V+++ PRR+ + LLD ++ ED I E++VVT Sbjct: 463 IAYLKSLLEHEDQLLKVIKEELIVVREKFTDPRRSEL--SLLDDEIDIEDLIDEEEVVVT 520 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++H GY+KR PL Y+ Q+RGG+G GV +EDF+ LF S ++FF++ G YK Sbjct: 521 ITHFGYIKRXPLVTYKEQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKI 580 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K +++P S ARG A++N+L LN E+I+ + P ++E Y+ TK G +++ Sbjct: 581 KAYKIPEASRTARGLAIVNLLHLNVDEKISAVFPVKQNEHER---YLTMITKKGLIKKTN 637 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 ++ F I + G IA+ + DE++ V T ++ I++ TK G + F IR GR + Sbjct: 638 ITAFNNIKKGGIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRP-TGRTA 696 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVR I+L+K D V + Sbjct: 697 KGVRAINLSKEDYV---------------------------------------------I 711 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 I +E Q IL ++ G GKRT +F+ R GKG+ V ++ G + Sbjct: 712 SATIPKEGEQ--------ILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVD--DKTGDV 761 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 VA+ V+D++ +++++ +G +IR+ V++I R KGV + + VV +E++ E Sbjct: 762 VAITSVSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDGIHVVCMEKVAE 819 >gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381] gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/928 (40%), Positives = 549/928 (59%), Gaps = 130/928 (14%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I V + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Y Sbjct: 6 ENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSKSPY 65 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ ++GQGNFGS+DGD AA RYT Sbjct: 66 KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAMRYT 125 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ A LL DL KDTVDF PNYD S EP VL AR PN+L+NG GIAVGMATNIP Sbjct: 126 EARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 185 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H+L E+VDG + ++D+ + L+ +M I+GPDFPTG VI G+ GI +AY TGRG + IR Sbjct: 186 PHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIFGKKGIIDAYRTGRGRVKIR 245 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ S +++ I++ E+PYQ NKA ++E+IA LV++K I I+++RDESDR+G RVV Sbjct: 246 AKTHIEQKS-NKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREGIRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ T++++ F V M+A++ +P+ FTLI +LK F+ R+ V++R Sbjct: 305 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKEPKIFTLIELLKLFLNHRKTVIIR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 365 RTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQ----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q AIL+++L RLTGL R+ I NEL + EI+ IL Sbjct: 414 ---------------FSLSEIQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S + + IIK EL+ +K++ + PR T IV+ D+E ED I E+M+VT++H GY+KRV Sbjct: 459 KSETLIEQIIKDELIEIKNKFNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P Y Q+RGGKG+ + D+DF+ F H +++F ++ G +Y KV+++P GS Sbjct: 519 PSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N++ L E+I I+P + NN + F TK+G V+R LS++ I + Sbjct: 579 TAKGKAVVNLIDLQADEKIMAIIPTTD---FNNNKSLCFFTKNGIVKRTNLSEYQNIRST 635 Query: 672 GKIAMKLDSRDEILSV--------ETCTQEND---------------------------- 695 G A+KLD DE+++ E + E D Sbjct: 636 GIKAIKLDDDDEVVTALIAERDINENLSNEKDLKSNDEIFGDEDELDSNDEILENENSEN 695 Query: 696 ---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 I++ T+ G C++F +S +R GR S GV I + D + A VL +D Sbjct: 696 ENSQEDGTKIIVVTQKGMCIKFMLSNVREI-GRVSRGVTAIKFKEKDDKVVGAAVLQSD- 753 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 EQ IL+VS Sbjct: 754 --------------------------------------------------EQEILSVSSN 763 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G GKRT++ ++R++ R GKG+ ++K + G L+ V V++N+ ++ ++ G +IRV Sbjct: 764 GIGKRTAAGEYRLTKRGGKGVICMKLTK--KTGELIGVVIVDENEDLMALTTSGKMIRVD 821 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSV 894 + IR A R T GV++ + DE VVS+ Sbjct: 822 MQSIRKAGRNTSGVIVVNVDGDE-VVSI 848 >gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] Length = 993 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/951 (39%), Positives = 545/951 (57%), Gaps = 90/951 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE++NSYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A +NP+I ++ LME I GPDFPTG +I G+ GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA +E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L++ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KAR+R H+L GL +A+AN+D ++ I+ S NP AR L W A ++ L++ Sbjct: 366 FELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLEKA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D S G DG +Y LS Q AILELRL RLTGL +D ++ E + Sbjct: 426 GSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +IK+EL + + RRT IVE +D ED I E +V+T Sbjct: 486 GQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y AQRRGG+G+S M+++D++ L + S H +VL F+++G VY+ Sbjct: 546 VSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVFATKH 654 +V+ +P S ++G+ ++N+L L+ E IT I+P F E + + N + Sbjct: 606 RVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKERLAEFKNF---VRSNV 662 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI----------LSVETCTQEND--------- 695 +R N + D + DE+ L VE T + D Sbjct: 663 ATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETVVEFAD 722 Query: 696 ----------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 + + T G R + F+ S G+R I L + D +I +AI Sbjct: 723 LAEKMRKNFFVFMATASGTVKRVELEQ---FSNVRSNGLRAIELKEEDTLIGVAIT---- 775 Query: 746 ADYDERICYMKHMSAQRRLISGD----------------TEEITSLKNDSSVEGNISEER 789 D +++I + R D T ++D + + +E Sbjct: 776 -DGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEE 834 Query: 790 CQELKLKEQF-----------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +L + + +L S G+GKRT DF R GKG+ A S+ N Sbjct: 835 SSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN-- 892 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 G LV ++++ +++L+SD GTL+R +E+ R +GV + +E Sbjct: 893 GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEE 943 >gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] Length = 809 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/881 (42%), Positives = 537/881 (60%), Gaps = 88/881 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM++SYL YA++VI+ RA+PD+RDGLKPV RR L+ M Q+G+ + +Y K A Sbjct: 6 VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEV+ YHPHG++A+YD L RMAQD++LR L++GQGNFGSVDGD AA RYTE RL Sbjct: 66 GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF PNYD S +EPVVL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ DG + +ID+PD ++ L +I++GPDFPTG +ILGR GI +AY TG+G I++R +H Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G+R I+VTE+PYQVNKAA++EKIAELV+E+RI I+D+RDESDR G R+VIEL+ Sbjct: 246 IEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIELR 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTK 374 R A +LNQLY++T +Q+ F VN +AL +G P TL +++ ++ R+ V+ RRT+ Sbjct: 306 REAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRTE 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR RAHVL GL IA++NLD V+ IR S + + A+ +LMQ Sbjct: 366 YDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQ--------------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+EVQ +AIL+++L RL L R I +EL + +I+E IL+S Sbjct: 411 -----------DFGLTEVQAQAILDMQLRRLAALERQKIEDELKEVRAQIREYESILASP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L I+K +L ++D+ RRT+IVE D+ DED I ++ V+V+ GY+KR+P Sbjct: 460 EKVLAIVKSDLQEIRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPD 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR QRRGG+G +GV ++D D V L + +T SVLFF++ G VY+ K +P S ++ Sbjct: 520 TYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSK 579 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G L+N+++L ER+T ++ E + + Y+ TK+G ++R L ++ + +G I Sbjct: 580 GLPLVNLINLEPHERVTEVIAVREFKP---DRYLTTITKNGKIKRTSLEEYSSVRSNGLI 636 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 AM L+ DE+ V +DIL+ T GQ +RFP S +R GR ++GV I Sbjct: 637 AMSLEEGDELRDVRLLGDNDDILVLTAKGQSIRFPASDVRP-TGRQAIGVTAI------- 688 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 RL GD E+ ++ E+ Sbjct: 689 ----------------------------RLSEGD--EVVAM----------------EVV 702 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853 IL V++KGFGKRTS +F R+G G RA KI+E G L ++ ++ Sbjct: 703 QSGAEILLVTKKGFGKRTSIDEFNRQARAGSGARAI---KIDEKTGDLATARMAPEDSEV 759 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ S G ++R+ N I S+A +GV + + ++ V S+ Sbjct: 760 LIASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSL 800 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 5/99 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++++ T+++ G KRTS ++ S+ G+ A + + +E L V + DND I+++ Sbjct: 607 DRYLTTITKNGKIKRTSLEEY--SSVRSNGLIAMSLEEGDE---LRDVRLLGDNDDILVL 661 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + KG IR P +++R R GV ++ + VV++E Sbjct: 662 TAKGQSIRFPASDVRPTGRQAIGVTAIRLSEGDEVVAME 700 >gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri] gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] Length = 829 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/883 (40%), Positives = 541/883 (61%), Gaps = 84/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE ++ Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV++G +++NPDI + LM+ I GPDFPTG V++G++GI+ AY TGRG+I++R Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRGTIIVRAKVD 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++I+V EIPY VNKA ++E+IAEL R K I I D+ DE+DR G R+VI+++ Sbjct: 250 IEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVR 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E VV RRT++ Sbjct: 310 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH++ GL IA+ ++DE++ IIR S E A+ ELM Sbjct: 370 ELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYG------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E L I + DIL+ R Sbjct: 417 -------------LSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRE 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++ RRT + G + ++EDED I ED++V ++H GY+KR+P+ Sbjct: 464 RINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVD 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + +DF+ L STH +LFF++ G VY K + +P A+ Sbjct: 524 EFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQ 583 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N E+I+ ++ E++ ++ Y+ F TK G V+R +++F I +G Sbjct: 584 GIPIINLLGINNKEKISAVINVSH-ETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNGLK 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ VE +++ +++ T G + F S +R GR++ GVRGI L D Sbjct: 643 ALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GRSAAGVRGIRLRDEDY 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A L +DS V Sbjct: 702 VIGAA----------------------------------PLNSDSKV------------- 714 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SE GFGK+T + ++ I R G G++ +V+ N G LV + VN ++ I+ Sbjct: 715 ------LVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKN--GPLVGLTTVNGDEDIM 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LV+D+G +IR + + R+ GV + RV ++ ++ Sbjct: 767 LVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV 809 >gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] Length = 809 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/886 (41%), Positives = 526/886 (59%), Gaps = 84/886 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+ +K + K A Sbjct: 4 IVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GE +GK+HPHG+ A+YDAL RMAQD+S+R LIEGQGNFGS+DGD AA RYTE RL Sbjct: 64 RIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDTVDF+PN+DGS +EP VL A++PN+LVNG GIAVGMATNIP HN+ Sbjct: 124 SKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPHNI 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV ++D+P+ + LM+ I+GPDFPTGA ++ + Y GRGS+ IR Sbjct: 184 SEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAKHT 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R IV+TE+PYQVNKA +++KIAELV+EK+I IAD+RDESDR+G RVVIELK Sbjct: 244 IEEVR-KRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LN+LY+ T LQ+ F+ NM+AL +P+ L L+ F+ FR EV++RRT Y Sbjct: 303 RDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILRRTAY 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KA R H+L GL A+ N+D VV++++ +P+P+ A L ++ Sbjct: 363 LLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREK--------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL+++L RLTGL R+ I E +L E ++ S Sbjct: 408 -----------FELSEAQAKAILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQ 456 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +IK+E+ + ++ RRT+IV +++ E I E++++ ++H G+V RV Sbjct: 457 EQRRLIKEEMAQIIEKFGDQRRTKIVSKESEIDIESMIEDEEVIIFLTHKGFVARVSAGT 516 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q R G G G+ R+ DFV D+ S+ +L F++ G VY K + +P +RG Sbjct: 517 YRTQSRSGTGVRGIKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRG 576 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++ N L G I + + P E S N V F T+ G V+R L +F +G A Sbjct: 577 HSIRNFLPGMAGNEIVSRI-IPVKEFSLNK-DVFFVTQRGYVKRTPLKEFSNPRSTGINA 634 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D ++ V + +++I+L +K G+ ++FP++ +R GRN+ GVRGI L D V Sbjct: 635 INLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQM-GRNARGVRGILLDPDDSV 693 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ A+V D Sbjct: 694 VAAAVVEPED-------------------------------------------------- 703 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +F+L V+EKG+GKR +F + R GKG+ A +S+ + G + + D++ IIL Sbjct: 704 --RFLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSE--KTGKVADATTLKDDEPIIL 759 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 VS KG +IRV +I + R T+GV I A+D+ VVSV ++ E+E Sbjct: 760 VSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAE 805 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 14/214 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V V+ GYVKR PL + R G + + + D + + +VS +++ S G Sbjct: 607 VFFVTQRGYVKRTPLKEFSNPR--STGINAINLEPGDRLVYVGLVSDKDNIILISKNGRA 664 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 K V + ARG + IL + + PED +++ T+ G + Sbjct: 665 IKFPVADVRQMGRNARG--VRGILLDPDDSVVAAAVVEPEDR------FLLIVTEKGYGK 716 Query: 659 RNKLSDFIQINRSGK--IAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 R ++ +F R GK IA KL + ++ T + I+L +K G+ +R + I V Sbjct: 717 RVEIEEFHLQRRGGKGLIAAKLSEKTGKVADATTLKDDEPIILVSKKGKIIRVKSADIPV 776 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 + GR++ GVR LA+ D V+S++ V A+ + D Sbjct: 777 Y-GRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809 >gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4] gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4] Length = 872 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/887 (39%), Positives = 543/887 (61%), Gaps = 67/887 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++G +K Y K A Sbjct: 7 IIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+++IY L RMAQ WS+R L++GQGNFGSVDGD PAA RYTE RL Sbjct: 67 RIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K + +L D+ KDTVDF+ N+D + +EP VL +R PN+LVNG GIAVGMATN+ HNL Sbjct: 127 RKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMAPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD +A IDN DI++ +++ I+ PDFPTG +I G G+K A+ TGRG IV+R Sbjct: 187 SEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIYGYAGVKEAFETGRGRIVVRSKVE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + RE+IV+ EIPYQVNK +++ + LV +K++ IA + DESDR+G R+V+++K Sbjct: 247 IETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIVVDVK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A++ V+LN+L++YT+LQS FSVN +AL +P + ++ FV R EVV+RRT++ Sbjct: 307 RDANSSVVLNKLFKYTALQSSFSVNNIALVHGRPRMLNVKDLIHYFVEHRHEVVIRRTRF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A RAH+L G I + NLDE ++IIR S P+ AR LM+R Sbjct: 367 ELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMER--------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q+RAI+E+RL +LTG+ +D +R E + I +IL Sbjct: 412 -----------FGLSEIQSRAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIE 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + IIK ELL VK + RRT+IV + ED ++M++T+SHLGY+KR LS Sbjct: 461 LRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRTALSE 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGG G G RDEDF+ ++ S H ++LFF+S G Y KV+ +P GS ++G Sbjct: 521 FRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKG 580 Query: 616 KALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L+++ +++ + D + Y++FATK+G +++ L + + ++G Sbjct: 581 RAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPRQNGV 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + D+++ V +++L+ + G+ +RF S +R GR + GVRG++L + Sbjct: 641 NAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREM-GRTATGVRGMTLDEDG 699 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+++ M V D +E I + +R + + ++ EGN Sbjct: 700 EDELVGMICVNKED---NENIMVVSQQGYGKRTLLDEVDD----------EGN------- 739 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L + E G + +R++NR GKG++ +++ ++ G LV + V D + Sbjct: 740 ---------LMLDENG----ETIPVYRVTNRGGKGVKTMNIT--DKTGKLVTIKNVTDEN 784 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897 +++++ G IR+ V + R+ RAT+GV + + K ++ + SV ++ Sbjct: 785 DLMIINKSGITIRLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831 >gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428] gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428] Length = 859 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/856 (41%), Positives = 542/856 (63%), Gaps = 39/856 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +++ +EM S+L Y+++VI+ RA+PD RDGLKP RRIL M +GV N+K++KCA Sbjct: 10 VQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLPNRKHIKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ MG YHPHG+ AIY L MAQ W++R +L++GQGNFGSV+GDPPA+ RYTE RL Sbjct: 70 KIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPASMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + L+DD+ K+TVDF P YD EPVVL A +PN+LVNGG GIAVGMATNIP HNL Sbjct: 130 RWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E ++G A IDNP+I LD LM+ ++GPDFPTG ++ G GI++ + TGRGS+ +RG + Sbjct: 190 SECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQGSAGIRSYFETGRGSVRVRGRAS 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G REQI+VTEIPY VN+A ++++IAEL EK + I+D+RDESD + RVVI+LK Sbjct: 250 FEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESD-ENTRVVIDLK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + VILN L+++T+L+S FSVNM+A++ +P L + ++ R E+++RRT++ Sbjct: 309 RDGNPKVILNNLFKHTALESSFSVNMLAIDHGRPRLLGLKDAIACYIEHRREIILRRTRF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LLN A A L G IA+ANLD+ +RIIR S + + A+ +LM SW + ++ L LI Sbjct: 369 LLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAVEQLGVLIR 428 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + DG +E Q IL+LRL +LTGL R+ I++E + L + I++ +DIL+ Sbjct: 429 SEARVV--DGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDLMDILAKEH 486 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L IIK EL +++D+ + RRT IV ++ ED I E ++VT++H G++KR +S Sbjct: 487 RVLTIIKDELRAIQDKYGSERRTEIVPEQGEIAIEDLIANEGVIVTLTHNGFIKRTAVSA 546 Query: 556 YRAQRRGGKG------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 YRAQRRGGKG R G D DFV LF +TH ++FF+ G Y E+V+ +P G Sbjct: 547 YRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCYVERVFEIPEG 606 Query: 610 SPQARGKALINILSLNQGERITT---IMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDF 665 + ++G+++ N+L L Q E+I I +E +W++ L++VFAT+ G V+++ L++F Sbjct: 607 TRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIVKKSNLNEF 666 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I + G IA+++++ D ++ + T ++I+L T G +RF +R GRN+VGV Sbjct: 667 KNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELR-DQGRNTVGVW 725 Query: 726 GISLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKN- 777 GI D V++ A+V + + +R + ++ R+ S + I ++K Sbjct: 726 GIRPDTKDYVVAAALVNKEAMLLVAGENGIGKRTGFDEY-----RIQSRGGKGIITMKTT 780 Query: 778 --DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 SV G ++ EL L ++ KG RT + R + R+ +G++ D+ + Sbjct: 781 DKTGSVAGALTVVETDELML-------ITNKGKMVRTRVAEIRETGRNAQGVKLIDLRE- 832 Query: 836 NEIGALVAVFPVNDND 851 NEI L + PV N+ Sbjct: 833 NEI--LQGIAPVVSNE 846 >gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J] gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J] Length = 837 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/883 (41%), Positives = 545/883 (61%), Gaps = 85/883 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE ++ V+ NPD LME+I GPDFPTGA+++GR+GI AY TG+GSIV+R Sbjct: 182 PHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE TS RE+IVVTE PY VNK + E I L +EKR+ I +RDES R+G R V Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ TL I+ ++ + EV+ R Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYIKHQIEVITR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++ R+ II +E+ +K + RRT ++ G +L +EDED I ED+++T S+ GY+KR Sbjct: 456 ANPERVKAIIIEEMDEIKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ+RGG+G G + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L++ E I TI+ ++ Y F T+ G V+R S+F I + Sbjct: 576 RTAKGLPVVNLLKLDEEETIQTIIKAKREDIEGK--YFFFTTRQGLVKRTNASEFHNIRQ 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L DE+++V + DI++ T+LG VRF S+IR GR++ GVRG+ L Sbjct: 634 NGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQM-GRSATGVRGVKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D V+ A I+ D E Sbjct: 693 DQDLVVGAA------------------------RITDDQE-------------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L ++E G+GK+T + ++ R GKGI+ +++ N G + + V+ Sbjct: 709 ---------VLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKN--GPIAGLVTVSGQ 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + I+++++KG +IR ++++ RAT GV + +D ++V+ Sbjct: 758 EDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVT 800 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 14/167 (8%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 +ED+++ + LGY R S R R G GV +RD+D V ++ VL + Sbjct: 656 QEDIIIG-TRLGYSVRFNESSIRQMGRSATGVRGVKLRDQDLVVGAARITDDQEVLIITE 714 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G+ K P +G NI + N + ED ++ T Sbjct: 715 NGYGKKTLASEYPTKGRGGKGIKTANITAKNGPIAGLVTVSGQED--------IMIITNK 766 Query: 655 GNVRRNKLSDFIQINRS--GKIAMKLDSRDEILS---VETCTQENDI 696 G + R +SD Q R+ G M+LD +I++ VE + DI Sbjct: 767 GVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVTFALVEAEAETEDI 813 >gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] Length = 843 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/902 (40%), Positives = 547/902 (60%), Gaps = 85/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE IT V+++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K Sbjct: 3 EELSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K +L D+ K+TVDF+ NYDG+ +EP +L AR+PN+LVNG GIAVGM TN Sbjct: 123 YTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++N D LME + GPDFPTG +++G++GI+ AY TG G+I+ Sbjct: 183 IPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVMGKSGIRKAYETGHGTII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G R Sbjct: 243 LRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+++R SA V+LN LY+ T +Q+ F NM+A+ P+ L IL+ ++ +EEV+ Sbjct: 303 VVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLGLKEILQHYLVHQEEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 363 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLM----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++Y+ LS Q +AIL++RL RLTGL R+ + +E N + I + D Sbjct: 412 -------NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R R+ II +ELL +++ RRT ++ G +L +EDED I ED++VT++H GY+ Sbjct: 457 ILAHRERINEIIYKELLEIQERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S ++ Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + +P Sbjct: 517 KRMATSEFKTQNRGGRGIQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFATKHGNVRRNKLSDFI 666 S A+G +IN+L ++ GE I ++ D + N Y+ F T +G +R +++F+ Sbjct: 577 YSRTAKGIPVINLLGISSGENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFL 636 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G A+ L DE+++V E +I++ T G V F + +R GR++ GVRG Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSM-GRSATGVRG 695 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L D V+ AI LK +S V Sbjct: 696 IRLRDEDYVVGSAI----------------------------------LKPESKV----- 716 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 L ++EKG+GK+T + ++ I R GKGI+ ++++ N G L + Sbjct: 717 --------------LVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKN--GPLAGLVT 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V + ++L++D+G +IR VN + RAT GV + T ++ +V ++ + E+ + DE Sbjct: 761 VEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDEAPVDDEN 820 Query: 907 ES 908 ++ Sbjct: 821 QT 822 >gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811] gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811] Length = 851 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/901 (41%), Positives = 547/901 (60%), Gaps = 86/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNL EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLIHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 DG + LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 --------------DGYL-LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + ++EDED I ED++VT++ GY+ Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ E+ + Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINV-RGEAGESKDYLFFVTRLGVVKRTAVSEFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ I++ TK G VRF +R+ GR + GVRGI Sbjct: 636 RTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIM-GRAAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD VI +V SL ++ Sbjct: 695 LRDGDLVIGSDVV--------------------------------SLNDN---------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ Sbjct: 713 -----------VLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GTLAGMIIVH 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEA 906 ++ I++ + +G +IR + RAT GV + +V ++ ++ ES +VD Sbjct: 760 GDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRLEDGAKVATLAKVEHEESLVVDAK 819 Query: 907 E 907 E Sbjct: 820 E 820 >gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] Length = 826 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 541/887 (60%), Gaps = 97/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + + KY K A Sbjct: 10 VQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSFGAKYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD AA RYTE R+ Sbjct: 70 RIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G A+++NP+I L +ME I+ PDFPTG +I G+ GI +AY TGRG I +R +H Sbjct: 190 TEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVRAKTH 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK G+R+ IV+ E+PYQVNKA ++E +A LV++K I ++++RDESDR G RVVIELK Sbjct: 250 IEK-KGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRDGMRVVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ TS+Q+ F + M+++ +P F LI ILK F+ R+ +++RRT + Sbjct: 309 RDAISEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGLIDILKHFINHRKTIIIRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL A+ +D+V+R+IR S E A+ L+ Sbjct: 369 DLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSE--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE+Q +I+ +RL RLTGL + I NEL L I+ IL S Sbjct: 414 -----------FDFSEIQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSED 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L GII +E V T RRT I + D++ ED I E MVVT++H GY+KRVPL+ Sbjct: 463 VLHGIIAEEFDEVLTTYTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLAS 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q+RGGKG++ V ++DF+ + F +TH ++LF + G ++ KV+R+P GS A+G Sbjct: 523 YEKQKRGGKGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSRTAKG 582 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+++L E+I +I+P F ED+S +VF TK+G V+R LS+F I +G Sbjct: 583 KAVVNLINLQADEQIQSIIPTTDFSEDKS------LVFFTKNGIVKRTNLSEFSNIRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 A+ LD D +++ + + + + TKL QC++F I R GR++ GVRGI Sbjct: 637 VRAIVLDDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTRE-QGRSTRGVRGIKFKH 695 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD+V+ I+ D Sbjct: 696 EGDEVVDANIIASDD--------------------------------------------- 710 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849 Q IL V+EKG GKRT + ++R++NR G G+ A ++ + G +V V++ Sbjct: 711 -------QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYIVGCLMVDE 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + ++ ++ G +IRV + I +SR T GV I K + VVS+ R Sbjct: 762 SMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDEVVSISR 805 >gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] Length = 850 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/893 (41%), Positives = 534/893 (59%), Gaps = 95/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTV+F PN+D + +EPVVL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EVV V +IDN + ++ LMEI++GPDFPTGA ILGR I+ AY TGR I + Sbjct: 189 REVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRTGRSKIKV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V++IE + + +I+V+E+PY VNKA ++EKIA+LV+EK+I I + DES+R+G R+ Sbjct: 249 RAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+VILNQL ++T LQ F V M+AL +P+ L +L ++ +E+VV Sbjct: 309 NIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYYLKHQEDVVR 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA +RAH+L GL IA+ ++DEV+ IIR S N A+R L +R Sbjct: 369 RRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFG-------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AI+++RL LTGL R+ I NE L I E I Sbjct: 421 ------------------LSDAQAQAIVDMRLRALTGLEREKIENEYKELQARISELKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LL +IK E+ + D+ RRT I DM ED I ED V+ ++HLGY+KR Sbjct: 463 LADEKKLLTVIKDEITVIADKYGDDRRTAIGYD-DDMSMEDLIPDEDTVIAMTHLGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +R+Q RGGKG G+ +ED++ DL + + H V+ F++ G VY+ K + +P Sbjct: 522 MDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAG 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669 ARG A++N+L L E+IT I+P E +N + Y+ ATK G V++ + ++ + Sbjct: 582 RTARGTAIVNLLQLQPEEKITAIIPMRE----YNEDKYLFMATKGGMVKKTPMCEYENVR 637 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ L DE++ V+ + DI L TK G C+RF + +RV GR S+GV G+ Sbjct: 638 KNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRV-TGRVSMGVIGMRF 696 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD+VI M M++Q GD+ Sbjct: 697 EDGDEVIGM------------------QMASQ-----GDS-------------------- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L VSE G GKRT +F NR GKG+ +++ + G L+ V+D Sbjct: 714 ----------LLVVSENGMGKRTVINEFSAQNRGGKGVICYKITE--KTGCLIGAKLVDD 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRES 900 +I++++ +G +IR+ V++I + R T GV + + D +V S+ ++RES Sbjct: 762 GREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDIKVASIAKVRES 814 >gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 788 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/858 (41%), Positives = 525/858 (61%), Gaps = 85/858 (9%) Query: 45 LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104 +RDGLKPVHRRIL+GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W Sbjct: 1 VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60 Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164 S R +L++G GNFGS+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP Sbjct: 61 SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120 Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224 +VL AR+PN+LVNG GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPD Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180 Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284 FPTGA+++G++GI AY TG+GSI +R + IE T RE+IVVTE PY VNK + E I Sbjct: 181 FPTGALVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHI 240 Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344 LV+EKRI I +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ Sbjct: 241 VRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAI 300 Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404 P+ +L IL A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RII Sbjct: 301 QNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRII 360 Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464 R S A+ ELM + LSE Q++AIL++RL R Sbjct: 361 RASETDAEAQAELMSK--------------------------FKLSERQSQAILDMRLRR 394 Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG- 523 LTGL RD I++E + L I + DIL+ R+ IIK EL VK + RRT ++ G Sbjct: 395 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQ 454 Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583 +L +EDED I D+++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L Sbjct: 455 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 514 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643 STH +LFF++ G VY+ K + +P A+G ++N+L L++ E I T++ D S Sbjct: 515 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS-- 572 Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 ++ Y+ F T+HG V+R + +F I ++G A+ L DE+++V + DI++ TK G Sbjct: 573 DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFG 632 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 VRF SA+R + R + GV+G++L +GD V+ +++ D DE Sbjct: 633 YAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLI----TDQDE------------- 674 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 +L ++EKG+GKRT + ++ R Sbjct: 675 ------------------------------------VLIITEKGYGKRTVATEYPTKGRG 698 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 GKG++ +++ N G L + V ++ +++++D G +IR + I RAT GV + Sbjct: 699 GKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVM 756 Query: 884 STAKDERVVSVERIRESE 901 +D ++V+ + +E Sbjct: 757 RLDQDAQIVTFTTVAVAE 774 Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 470 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 526 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 527 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 575 >gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801] gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802] gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801] gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802] Length = 857 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/884 (41%), Positives = 545/884 (61%), Gaps = 62/884 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++EM +SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 8 IIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ +TVDF N+DGS QEPVVL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I NP++ L ++I GPDFPTG ILGR+GI++AY +GRGSI +RGV+ Sbjct: 188 LGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DR+ I+VTE+PYQ NKAA++E+IA+LV EKRI I+D+RDESDR G R+ Sbjct: 248 QIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRDGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T +QS F NM+AL +P+ TL L F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRVETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++R H+L GL IA+ NLD V+++IR + + TAR L+++ Sbjct: 368 RRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQ---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L + I E L +I + DI Sbjct: 418 ----------------FGLSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+ II++EL +K TPRRT I+ ++ D D I E ++ ++ GY+KR Sbjct: 462 LARRERIEAIIEEELTQIKTIHATPRRTEIIHDEGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + AQ R +G++ ++++D V H VLFFS G VY +++P S Sbjct: 522 MPVSTFGAQSRATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQIPAAS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+I+ E ++Y + T+ G +++ LS F I Sbjct: 582 RTARGVPIVQMLPIPKDEKITSIVAVSE---FREDVYFIMLTRKGYIKKTALSAFSNIRT 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V+ +E+ I++ T+LG + F ++ GR++ GV+ + L Sbjct: 639 NGLIAIVLGEGDQLRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPLGRSTRGVKAMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD++ISM I +S+Q +I+G I+++ E + E Sbjct: 699 KKGDELISMDI-----------------LSSQ--VIAG----ISTVHEGEEEEDLLENEE 735 Query: 790 CQELKLKE--QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ +ILT++ G+GKR FR+ NR+G G+R ++ L ++ V Sbjct: 736 ELTVEETSGGPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKFKSPSD--RLASLLVV 793 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 N+ D++++VS++G +IR V+ I SR GV + +D+ + Sbjct: 794 NEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDDAI 837 >gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] Length = 828 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/895 (41%), Positives = 541/895 (60%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K A Sbjct: 6 ILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GK+HPHG+ A+YD+L R+ QD+S+R LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K TVDF N+D S +EP VL + PN+L NG GIAVGMATNIP NL Sbjct: 126 KAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+VDG +A+I NP++++ LM+ + PDFPTG +I G G++NAY TGRG +VIR + Sbjct: 186 REIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIYGYEGVRNAYMTGRGKVVIRARAL 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE I+VTE+PYQVNK ++EKI ELV +K++ IAD+RDESDR G R+VIEL Sbjct: 246 VEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L ++ ++ R E+V+RRTK Sbjct: 306 KRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMIYYIKHRNEIVLRRTK 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L+ A RAH+L GL I + NLDEV+ IR SP+ TA+ +LM+R Sbjct: 366 FDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q++AILE+RL RLTG+ R I E I+ ILSS Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 EKQMEIIREELLKVREVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGG+G +G + +DF+ +FI STH +LFF++ G Y KV+ +P AR Sbjct: 520 GYRRQARGGQGVTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G+AL NI+ L GE+I + DE ++V AT +G V++ L DF R+G Sbjct: 580 GRALANIMELQPGEKIRAYINIRNFDEPG----FIVMATTNGIVKKTPLDDFSHPRRNGL 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ ++ DE+L E+ I+L G VRF + IR GR ++GV+GI+L +G+ Sbjct: 636 AAITIEEHDELLDARLTDGEHQIILAKSSGFVVRFAEAEIRSM-GRTAMGVKGITLDEGE 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + ISM +T+ + D++ Sbjct: 695 KCISM---------------------------------VTTKRFDTA------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++ GFGKR+ D+R++ R +G+ + +IGALV + VND+D + Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKIGALVGLLDVNDDDDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 I+++ G + R V++IR+ R T GV + + + ++ R+ +S+ DE +S Sbjct: 761 IIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKSD--DEGDS 813 >gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] Length = 874 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/884 (40%), Positives = 521/884 (58%), Gaps = 82/884 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V I ++++ +YL Y+++VI+ RA+PD+RDGLKP RRI++ M ++ + + Sbjct: 3 ETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHF 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I+G+ G YHPHG +Y L R+AQ W +R LIEGQGNFGS+DGDPPAA RYT Sbjct: 63 RKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RLQK +L +L KDTV+FR NYD + QEP V AR+PN+LVNG GIAVGMATN+P Sbjct: 123 EARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HN+GEV D +A+IDNPD+ L+E I+GPDFPTG ILG GI+ + TGRG I++R Sbjct: 183 PHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G + IE D EQI++ IPYQ++ + ++E++ ELV++K+I I+D+RDES R G R+V Sbjct: 243 GETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I++KR A V+ N LY+YT LQS F V N+ ++G P+ + +L+ F+ FR EVV+ Sbjct: 303 IQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGV-PQVVNMKEMLQNFIDFRHEVVL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L A++R H+L GL IA+ NLDEV+ +IR S P A Sbjct: 362 RRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDA----------------- 404 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++G LSE+Q +AIL++RL RLTGL RD I E L I I ++ Sbjct: 405 ---------SVGLQEKFGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTEL 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGY 547 + + + +IK+E ++D+ R T I+ G +M ED I E +VVT++H GY Sbjct: 456 VEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNM--EDLIADEMVVVTITHDGY 513 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+P+ Y+ Q RGGKG S +++EDF+ LF+ STH+ +L F+ G Y KV+ +P Sbjct: 514 VKRLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIP 573 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARGKA++N++ L +G+RI + + N +V T++G V++ L+ F Sbjct: 574 EASRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQN---IVMCTRNGLVKKTPLTAFSH 630 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G A+KL DE++ C +DILL T G+C RF S IR R S GV+GI Sbjct: 631 PRSIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMR-RFSQGVKGI 689 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD VISM I +AQ +L +G K +SS Sbjct: 690 RLRNGDYVISMTIA-----------------TAQDQLENG--------KPNSST------ 718 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL +SEKG+GKR+ + ++ R G+ ++ N G L A+ V Sbjct: 719 ------------ILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERN--GYLAALMLV 764 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 D+D +++++ G +IR V+EI + R T GV + + A ++ V Sbjct: 765 RDDDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVV 808 >gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1] gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1] Length = 830 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/904 (41%), Positives = 533/904 (58%), Gaps = 96/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++S +ITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RR+L+ M++ G+ N+ + KCA Sbjct: 8 LSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ YHPHG++++YD L RMAQ W +R LI+ QGNFGSVDGDP AA RYTECRL Sbjct: 68 GVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTECRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ +DTVDF PNY S EP VL A PN+L+NG GIAVGM TNIP HNL Sbjct: 128 NAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D A+IDNP I +D L I++GPDFPTG VI GR GI + TG+G + RG +H Sbjct: 188 AEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIVRTRGKAH 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G EQIVVTEIPY VN+A ++ +IAELV +K+I I DLRDESD + R+VIELK Sbjct: 248 TEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESD-ENTRIVIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG + V++NQL++ T+L+S F V ++AL+ +P++ + +++ ++ R EVV RRT++ Sbjct: 307 RGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRREVVTRRTRF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G IA+ NLD+ V+IIR S N E A+ LM + Sbjct: 367 RLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK--------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE QT AILELRL +LTGL R I E L I+E IL S Sbjct: 412 -----------YPLSERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEP 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +LL +IK+EL +K++ +PRRT I+ + ED I E V+TVSHLG++KR P++ Sbjct: 461 KLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAE 520 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+QRRGGKG G +EDFV +LF STH +LFF+S+G + +KV+ +P G+ ++G Sbjct: 521 YRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKG 580 Query: 616 KALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 K++ + L L +GE+I ++ F ED Y+V ATK G ++++ LSD+ R G Sbjct: 581 KSVSSFLRLAEGEKIAAMLCVKDFAEDR------YLVTATKRGIIKKSALSDYANATREG 634 Query: 673 K-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF----PISAIRVF--AGRNSVGVR 725 I + L D ++ T EN+++L + G VRF P S +F GR + GV Sbjct: 635 GLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVT 694 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ +DY + I + H Sbjct: 695 GMR-------------FKLKSDYLDVIEVVDH---------------------------- 713 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E L SE G G RT D+R+ NR G G+ A D+ + I L Sbjct: 714 -----------EAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSI-KLAGAL 761 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V ++D+++L++ KG IR PV +IR +R KGV + + ++++S+ RI E+E Sbjct: 762 SVREDDEVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKLLSIARIVETEEESG 821 Query: 906 AEST 909 AE+T Sbjct: 822 AEAT 825 >gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] Length = 857 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/894 (41%), Positives = 538/894 (60%), Gaps = 87/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V+++ M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV K Y K A Sbjct: 11 IENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPEKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+A+ RMAQ++S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 71 RIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+T+D+ PNYD S +EP VL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 131 SKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++DNPD LM+ + GPDFPTG +++G++GI++AY +G+G+I +R Sbjct: 191 AEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGKGTITLRAKVD 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE+I+VTEIPY VNKA ++E+IAEL R+KR+ I DL DESDR G R+VI+++ Sbjct: 251 VEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDRDGMRIVIDVR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA VILN LY+ T LQ+ FS NMVA+ P+ +L IL+ ++ +EEV+ RRT++ Sbjct: 311 RDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLKSILEHYLVHQEEVIRRRTEF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++D +++IIR S +TA+ LM+R Sbjct: 371 DLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMER--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL RD + NE N+L I + DIL+ Sbjct: 416 -----------YDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALITDLKDILAKPE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++ + RRT ++ G +L +EDED I ED+V+ ++H GY+KR+P S Sbjct: 465 RIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTHNGYIKRLPAS 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + +P A+ Sbjct: 525 EFKVQNRGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGYEIPEYGRTAK 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N ER+ T++ ++ L+ F T+ G V+R + +F I +G Sbjct: 585 GIPIINLLGINSDERVQTVVNIGKEVKPEQALF--FITRLGTVKRTAVGEFANIRSNGLK 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+ +V + +I + T G V F +A+R GR + GVRGI L +GD Sbjct: 643 ALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSM-GRTAAGVRGIRLREGDY 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ +L Sbjct: 702 VVG-----------------------------------------------------SDLL 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + Q IL +SEKG+GKRT+ D+ I R GKG++ ++++ N G L + V + I+ Sbjct: 709 IPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN--GPLAGIAAVTGEEDIL 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 L++D G LIR V + RAT GV + + +V ++ + E+E DE E+ Sbjct: 767 LITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATV-EAE-PDEPET 818 >gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] Length = 828 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/893 (41%), Positives = 553/893 (61%), Gaps = 99/893 (11%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M +++IS E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MQDNLIS----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ Y K ARI G+V+GKYHPHG+ A+Y AL RMAQD+S+RL L++GQGNFGS+ Sbjct: 57 HELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT+IP H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R H+EK ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++R Sbjct: 237 YKTGRGRVKVRAKVHVEKMK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ +++RRT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q++AILE+RL RLTGL RD I+ E +L Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I + IL S RL ++K ELL VK++ + RRT I E +++ ED I E MVV Sbjct: 450 LELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDVEDLIANEPMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 ++S+ GYVKRV L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 KV+++P S A GKA++N++SL E+I + + DE S + F TK+G V+ Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVK 624 Query: 659 RNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRV 715 R LS+F NR SG A+ LD DE++S + ++ +L+ + LG ++FP+ +R Sbjct: 625 RTNLSEFGS-NRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVRE 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GRN+ GVRGI L + D V+ A+V++ D++ Sbjct: 684 I-GRNARGVRGIKLNENDFVVG-AVVINDDSNK--------------------------- 714 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L+VSE G GK+T + +R +R GKGI +++ Sbjct: 715 ------------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ- 749 Query: 836 NEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 + G LV+V V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 750 -KTGNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 VEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773] Length = 840 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/902 (40%), Positives = 546/902 (60%), Gaps = 84/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NP LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL+A++ + EV+ Sbjct: 303 ISIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKAILEAYLTHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ L+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLI----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 DG LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 412 --------------DG-YALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ + R+ +I ELL ++ + RRT + G + +EDED I ED+++T++ GY+ Sbjct: 457 ILAHQERVDQLIYDELLEIQTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ E++ ++ Y+ F T+ G V+R +S+F I Sbjct: 577 YGRQAKGIPVVNLLHFEGDEKIQTVINV-RGEATDSHDYLFFVTRLGVVKRTAVSEFANI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ +L+ TK G VRF + +R+ GR + GVRGI Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIM-GRAAAGVRGIR 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI +V DTE Sbjct: 695 LRENDLVIGADVV-------------------------DDTEN----------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GK+T + ++ I R GKGI+ +++ N G L + V Sbjct: 713 -----------VLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKN--GVLAGMTIVR 759 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I++ + +G +IR V + RAT GV + +V ++ ++ D + Sbjct: 760 GDEDIMVTTTQGVMIRFAVASVSQTGRATLGVRLIRLEDGAKVATLAKVEHETTEDVSRE 819 Query: 909 TE 910 TE Sbjct: 820 TE 821 >gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 833 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/886 (41%), Positives = 545/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32] Length = 828 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/882 (41%), Positives = 546/882 (61%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + ++ +L+ + LG ++FP+ +R GR + GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D + Sbjct: 694 IRLNEDDFVVG-AVVISDDGNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366] gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366] Length = 869 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/896 (40%), Positives = 553/896 (61%), Gaps = 93/896 (10%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 + +E I + I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM+ +G+ N Sbjct: 6 ENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANN 65 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGN+GS+DGD PAA Sbjct: 66 KPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAM 125 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R QK A +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG GIAVGMAT Sbjct: 126 RYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMAT 185 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HN+ E ++ +A IDN +I + LM+ I+ PDFPTGA+I G TG++ A+ TGRG I Sbjct: 186 NMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEAFETGRGRI 245 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + IE + DRE I+VTEIPYQVNKA M+E+ AELV EK++ I++++DES++ G Sbjct: 246 VMRAKAEIE-AAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGI 304 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL +P+ L ++ FV R EV Sbjct: 305 RIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHYFVEHRHEV 364 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 VVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S PE AR LM++ Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK-------- 416 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS++Q RAIL++ L RLTGL RD I++E N L I+ Sbjct: 417 ------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQ 458 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL S+ + IIK EL +K++ RRT IV DM ED I E++V+T+SH GY+ Sbjct: 459 SILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVITISHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P + YR Q RGGKG G R+EDF+ L I S H +LFF+ G + +V+ +P Sbjct: 519 KRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPE 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G+ ++G+A+ NI+++ P++E K+ FI++ Sbjct: 579 GTRLSKGRAIQNIINI------------PKEE--------------------KIKAFIKV 606 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 L + + N I++ TK G + +++ ++ G+ I+ Sbjct: 607 KN--------------LKDQEYLENNYIIMCTKKGTIKK---TSLEAYSRPRVNGINAIN 649 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEG-NIS 786 + +GDQ++ ++ + E + ++ R I + E++ + + + V G ++ Sbjct: 650 INEGDQLLEASLTTGSS----EIVMALR----SGRAIRFNEEKVRPMGRTATGVRGVTLA 701 Query: 787 EERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E+ + + + IL VSEKG+GKRT D+R++NR GKG++ +V+ ++ G L Sbjct: 702 HEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DKTGNL 759 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 VA+ V D D +++++ G +IR+ V+E+R+ RAT+GV + + ++ + SV RI Sbjct: 760 VAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815 >gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl] gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl] gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl] gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl] Length = 822 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/882 (41%), Positives = 538/882 (60%), Gaps = 89/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+IT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM MG N+ Y K A Sbjct: 6 VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GK HPHG++A+YDALARMAQ WS+R LI+GQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL ++ KDTVDFR N+DGS++EPVVL A PN+L+NG GIAVGMATNIP HNL Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ D +I++P+ ++ LM+II GPDFPT +ILG GI AY+TGRG I +R +H Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ IVVTE+PYQVNKA + E+IAELV++++I I D+RDESDR G R+VI LK Sbjct: 246 IEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN LY++T +Q+ F +NM+AL +G +P TL +L+ ++ R+EV+ RRT Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +AR+RAH+L GL IA+ NLD V++ IR S E+AR LM Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLM--------------- 410 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 S+++ L+E Q +AIL+L+L RL L R I +E + I E DIL++ Sbjct: 411 ---SNFS--------LTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILAN 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552 ++L +I+Q+L +K++ PRRTRI+ + ++ DED I +++T++ GY+KR Sbjct: 460 PRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR QRRGG+G G++ R++D V L ++ ++LFF+ G VY+ K +P S Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE++T+++ E ++ Y+V AT G ++R +L ++ Q+ +G Sbjct: 580 AKGLPLVNLISLEPGEQVTSMLAVRE----FDAEYLVMATVRGKIKRTQLREYSQVRSNG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L+ D + V DILLTT GQ +RF S +R GR + GV GI+LA G Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLADG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+SM +++EE Sbjct: 695 DRVVSM---------------------------------------------DLAEEGAD- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L V+ +G GKRT+ ++ + R+ G+ + N++ + A V ++ Sbjct: 709 -------LLVVTARGIGKRTALSEYPVKGRATGGV--ITIKLRNDLDEVAAAAVVREHSL 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G ++R +EI RAT+GV I + A +RV ++ Sbjct: 760 LTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAAL 801 Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 9/122 (7%) Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 V G +S+E +L + ++T++++G+ KR +R R G+GI+ + + + Sbjct: 490 VTGEVSDE---DLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRH 546 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 L+ N D ++ +D+G + ++ +E+ +SR KG V + S E+V S+ + Sbjct: 547 LLTC---NSLDNLLFFTDRGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAV 603 Query: 898 RE 899 RE Sbjct: 604 RE 605 >gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 839 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/885 (40%), Positives = 540/885 (61%), Gaps = 84/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 11 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGS+DGD PAA RYTE ++ Sbjct: 71 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAAMRYTEAKM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 131 SKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMATNIPTHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ ++DNPD + LM+++ GPDFPTG V++G++GI+ AY TGRG+IV+R Sbjct: 191 GEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVMGKSGIRKAYETGRGTIVVRAKVD 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R+QIVV EIPY VNKA ++E+IA+L R K I I D+ DE+DR+G R+VI+++ Sbjct: 251 IEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDREGMRIVIDVR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ F+ NM+A+ P+ +L IL+ ++ +E VV RRT++ Sbjct: 311 RDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKEILQYYLEHQENVVRRRTEF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH++ GL IA+ ++DE++ IIR S E A+ +LM+ Sbjct: 371 DLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYG------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I E L I + DIL+ + Sbjct: 418 -------------LSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDILAHQE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++ + RRT + G + ++EDED I E ++VT++H GY+KR+P+ Sbjct: 465 RINQIIYDELLEIQKKFGDKRRTELQVGDITNIEDEDLIEEESIIVTLTHNGYIKRLPVD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + +DF+ L TH +LFF++ G VY K + +P A+ Sbjct: 525 EFKSQHRGGRGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQ 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L ++ E+I+ ++ E++ ++ ++ F TK G V+R +++F I +G Sbjct: 585 GIPIINLLGIDNKEKISAVINVSH-ETNDDDKFLFFTTKQGTVKRTPVTEFKNIRSNGLK 643 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V+ + ++++ T G + F S +R GR++ GVRGI L D Sbjct: 644 AINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSM-GRSAAGVRGIRLRDDDY 702 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI A L +DS+V Sbjct: 703 VIGTA----------------------------------PLDDDSNV------------- 715 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SE G+GK+T + ++ I R G G++ +V+K N G LV + V ++ I+ Sbjct: 716 ------LVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKN--GPLVGLTTVKGDEDIM 767 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV+D G +IR V + R+ GV + V ++ ++ + Sbjct: 768 LVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIAKVEK 812 >gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] Length = 828 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GR++ GVRG Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRSARGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V++ D + Sbjct: 694 IRLNENDFVVG-AVVINDDGNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] Length = 853 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/896 (40%), Positives = 547/896 (61%), Gaps = 84/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V+++ M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K A Sbjct: 11 ISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 71 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 131 SKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++DNPD + LME++ GPDFPTG +++G++GI+ AY TGRG+I++R Sbjct: 191 AEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGRGNIIVRAKVD 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I+ +++I+VTE+PY VNKA ++E+IA L R+K I I D+ DESDR+G R+VI+++ Sbjct: 251 IQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMRIVIDVR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA VILN LY+ T +Q+ F NM+A+ P+ +L IL ++ +E+V+ RRT++ Sbjct: 311 RDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQEDVIRRRTEF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 371 DLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E L I + +IL+S+ Sbjct: 418 -------------LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKD 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +EL+ ++ + RRT ++ G +L +EDED I E++ VT++H GY+KR+P + Sbjct: 465 RINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTT 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + +P A+ Sbjct: 525 EFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAK 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N GE+I ++ D S+ +N Y+ F T G V+R + +F I +G Sbjct: 585 GIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQEFANIRSNGLK 643 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V +I++ T G V F + +R GR + GVRGI L D Sbjct: 644 AITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSM-GRTASGVRGIRLRDDDF 702 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI + LK DS+V Sbjct: 703 VIGFDV----------------------------------LKPDSNV------------- 715 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 FI+T EKG+GK+T + D+ I R GKGI+ +V++ N G L + V+ + I+ Sbjct: 716 ----FIIT--EKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGLTTVDGQEDIM 767 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++G +IR + + RAT GV + D +V ++ ++ VDE +T+ Sbjct: 768 VMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATD 823 >gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946] gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946] Length = 805 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/879 (41%), Positives = 522/879 (59%), Gaps = 86/879 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + IT+E++ S++ YA++ I+ RA+PD+RDGLKPV RRIL+ Q G+ +K+ K A Sbjct: 4 VLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEVM KYHPHG+AAIYD LAR+AQ W+ R LI+GQGNFGS+DGDPPAA+RYTE RL Sbjct: 64 GIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ K+TV+F PNYDG+ ++P VL A PN+LVNG GIAVGMAT+IP HNL Sbjct: 124 SSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D VA+ID P + LD +M+++ GPDFPTGA L R GI+ AYA+GRGS+ +R Sbjct: 184 SEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGAR-LSRKGIREAYASGRGSLKVRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E +G R +V TEIPYQVNKA ++ +IA L + K I +IA LRDESDRQG R+ +ELK Sbjct: 243 NEDKNG-RAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ V+LN+LY+++ LQ+ F+VN++A+ +P+ +L +L+ ++ R EVV RRT+Y Sbjct: 302 RGANPQVVLNKLYKHSRLQASFTVNLLAIVNGEPKVLSLPELLRHYLNHRREVVYRRTQY 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L++A+ RAHVL GL IA+ ++DEV+ +IR S + AR L+ R Sbjct: 362 ELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIAR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL RL GL R+ ++ E L I IL Sbjct: 407 -----------FALSDIQAQAILDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQDEK 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL G++K+ELL +K++ RRT++ E ED I E MV+T++ G++KR PL Sbjct: 456 RLWGVVKEELLEIKNKYGDARRTQLTEFEEGFNPEDLIEDEPMVITLTSQGFLKRTPLEA 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGG G ++ED +F+ S H +LFF++ G VY+EKV+ LP S QARG Sbjct: 516 YRAQGRGGVGAQAGKTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++++L L +GE + ++ S Y VFAT+ G ++R ++ ++ ++ +G IA Sbjct: 576 THVVSMLPLIEGEEVAALLGV---RSLSEAGYFVFATRQGLIKRTEIQEYQNLSSAGLIA 632 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQ 734 + L D ++ V I+L T GQ +RF + +R GR S GV GI +GDQ Sbjct: 633 INLLENDALIGVGIAQDGEQIMLATAYGQAIRFDLEDVRA-TGRASQGVTGIRFKDEGDQ 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ I+ EG Sbjct: 692 VVSLVIL------------------------------------PKGYEGE---------- 705 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V KG+GKRTS ++ + R G+G+ ++G L A+ V ++ ++ Sbjct: 706 -----VLAVGTKGYGKRTSVAEYPVQGRGGQGV--ITFKTTEKVGKLAALMRVAGDEDLL 758 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++S +G IR V I + R T GV I + A+D+ VVS Sbjct: 759 VLSRRGIAIRTKVGSISLYGRPTSGVKIMNLAEDDEVVS 797 >gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 853 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/896 (40%), Positives = 547/896 (61%), Gaps = 84/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ V+++ M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K A Sbjct: 11 ISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 71 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG GIAVGM TNIP HNL Sbjct: 131 SKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++DNPD + LME++ GPDFPTG +++G++GI+ AY TGRG+I++R Sbjct: 191 AEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGRGNIIVRAKVD 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I+ +++I+VTE+PY VNKA ++E+IA L R+K I I D+ DESDR+G R+VI+++ Sbjct: 251 IQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMRIVIDVR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA VILN LY+ T +Q+ F NM+A+ P+ +L IL ++ +E+V+ RRT++ Sbjct: 311 RDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQEDVIRRRTEF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 371 DLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYG------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R+ I +E L I + +IL+S+ Sbjct: 418 -------------LSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILASKD 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II +EL+ ++ + RRT ++ G +L +EDED I E++ VT++H GY+KR+P + Sbjct: 465 RINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTHNGYIKRLPTT 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +++Q RGG+G G+ + D+DF+ L STH +LFF++ G VY+ K + +P A+ Sbjct: 525 EFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAK 584 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L +N GE+I ++ D S+ +N Y+ F T G V+R + +F I +G Sbjct: 585 GIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQEFANIRSNGLK 643 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V ++++ T G V F + +R GR + GVRGI L D Sbjct: 644 AITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSM-GRTASGVRGIRLRDDDF 702 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI + LK DS+V Sbjct: 703 VIGFDV----------------------------------LKPDSNV------------- 715 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 FI+T EKG+GK+T + D+ I R GKGI+ +V++ N G L + V+ + I+ Sbjct: 716 ----FIIT--EKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGLTTVDGQEDIM 767 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +++++G +IR + + RAT GV + D +V ++ ++ VDE +T+ Sbjct: 768 VMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVDETVATD 823 >gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] Length = 831 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/889 (41%), Positives = 546/889 (61%), Gaps = 96/889 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ +L+ ++E I+GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIYGKVGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I E IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ +PRRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ + DF+ F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + + +L+ + G ++FP+ +R GR++ GVRG Sbjct: 635 RSYSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFPLEDVREI-GRSARGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D VI A+V+ D + Sbjct: 694 IRLNENDFVIG-AVVISDDHNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R R GKG+ ++K + G LV + Sbjct: 715 -------------LLSVSENGLGKQTLAESYREQARGGKGVIGMKLNK--KTGNLVGIIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+D N +++++ +IRV + +IR R GV + A ++VV V Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDAA--DKVVYV 806 >gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11] gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11] Length = 813 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/894 (41%), Positives = 547/894 (61%), Gaps = 85/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 ++ I+L+++KG +IR V+ + RAT GV + +VV++ + E+ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEV 812 >gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994] gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994] Length = 830 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/885 (40%), Positives = 537/885 (60%), Gaps = 93/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I D +++SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + KY K A Sbjct: 10 INDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G+YHPHG+ ++YDAL RMAQ +++R L++GQGNFGSVDGD AA RYTE R+ Sbjct: 70 RIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL DL KDTVD NYDG+ QEP VL R PN+L+NG GIAVGMATNIP HN Sbjct: 130 TRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIPPHNP 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ V ++DNP+ L +M+ I+ PDFPTG I G+ GI +AY TGRG I +R +H Sbjct: 190 NEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIYGKKGILDAYETGRGRIRVRAKTH 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK S +++ IV+ E+PYQVNKA ++E IA+LV++K I I+++RDESDR+G RVVIELK Sbjct: 250 IEKKS-NKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN LY+ T++++ F + M+++ +P FTL+ +L F+ R+ V++RRT + Sbjct: 309 RDAMSEIVLNNLYKSTNMETTFGIIMLSVFNQEPRVFTLLEMLGHFINHRKTVIIRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL A+ +++ ++++IR S + ETA+ L++ Sbjct: 369 DLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEE--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S +Q +AIL++RL RLTGL RD I NEL + I+ IL S Sbjct: 414 -----------FGFSPIQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESILRSEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L GIIK+E + + ++ + PR T I + D+ ED I E MVVT+SH GY+KRVPL+ Sbjct: 463 VLKGIIKEEFVELVEQYNIPRVTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRVPLAA 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG+ V D+DF+ + +TH +++F + G ++ KV+++P GS A+G Sbjct: 523 YEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSRTAKG 582 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N+++L E+I +I+P F E +S +VF T++G V+R L++F I +G Sbjct: 583 KAVVNLINLEADEKIRSIIPTTDFDEKKS------LVFFTQNGIVKRTALNEFSNIRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ LD D +++ T+E L + TK QC++F I R GR++ GVRGI Sbjct: 637 VRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTR-DQGRSTRGVRGIKF-- 693 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++ D V+ NI Sbjct: 694 ------------------------------------------KIEGDVVVDANI------ 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +K E+ IL VSEKG GKRT++ ++R++NR+G G+ A ++ +V V++ Sbjct: 706 -IKSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGT-TVVGCVMVDETM 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ ++ G +IRV + I + R T GV I K + V S+ R Sbjct: 764 DLMALTKAGKMIRVDMQTIAKSGRNTSGVYI---VKGDDVASISR 805 >gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630] gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus faecalis OG1RF] Length = 833 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] Length = 859 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/885 (41%), Positives = 543/885 (61%), Gaps = 60/885 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + + KCA Sbjct: 8 IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LIEG GNFGSVD DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + + LL D+ DTVDF N+DGS QEP+VL AR P +L+NG GIAVGMATNIP HN Sbjct: 128 QALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I NP++ L++II GPDFPTG ILGR+GI +AY +GRGSI +RGV+ Sbjct: 188 LGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + DRE I++T++PYQ NKAA++E+IA+LV +KRI I+D+RDESDR G RV Sbjct: 248 EIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRDGMRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN +Y+ T +Q F NM+AL +P+ T+ L+ F+ FR E + Sbjct: 308 VIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRVETIT 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+ NLD V+++IR + + TA++EL+++ Sbjct: 368 RRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQ---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L + I E L ++I + DI Sbjct: 418 ----------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+ II++EL +K TPRRT IV ++ D D I E ++ ++ GY+KR Sbjct: 462 LARRERIEAIIEEELAQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + AQ+R +G++ ++++D V H VLFFS G VY +++ S Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIQAAS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ++ +L + + E+IT+I+ E +++++V T++G +++ LS F I Sbjct: 582 RTARGIPIVQMLPIPKDEKITSIVAVSE---FSDDVFLVMLTRNGYIKKTALSAFSNIRT 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V +E+ I+L T G + F ++ GR + GV+ + L Sbjct: 639 NGLIAISLGDGDQLRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPLGRATRGVKAMKL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 KGD++ISM I ++AQ TEE D + N +EE Sbjct: 699 KKGDELISMDI-----------------LTAQVTAGMAYTEE------DEEILDNENEEL 735 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E +IL ++ G+GKR FR+ R+G G+RA ++ L ++ VN Sbjct: 736 TEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKFKSDSD--CLASLRVVNA 793 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D++++VS++G +IR V+ I + SRA GV + ++ + +V Sbjct: 794 EDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAAV 838 >gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] Length = 916 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/723 (45%), Positives = 477/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 RSW +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 SRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 4/108 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 G LIR V +IR RA GV + + + E +VS+ER+ E E DE+E Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE--DESE 899 Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 40/229 (17%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + ++ FS+LG + + W Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632 LP G P RG + + L +I + Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690 ++ F E+ + L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L T Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840 Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 888 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640 + + KV ++ R A + +++L++GE + ++ EDE Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDE 895 >gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980] gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980] Length = 823 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/905 (40%), Positives = 556/905 (61%), Gaps = 89/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K D Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905 N+ I+L++DKG +IR V+ + R+T GV + D +VV++ + E E V+ E Sbjct: 759 GNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817 Query: 906 AESTE 910 ++TE Sbjct: 818 EQATE 822 >gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] Length = 870 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/892 (40%), Positives = 543/892 (60%), Gaps = 90/892 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++ + N Y K AR+ Sbjct: 43 IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLV 102 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS+DGD AA RYTE R+ K Sbjct: 103 GEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKI 162 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ KDT+D+R N+D S EP VL AR PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 163 AEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGEL 222 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG +A+IDN DI +D L+ I+GPDFPTG +I G++GI +AY TGRG + + + I Sbjct: 223 SDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYKTGRGKVRVSAKTEIIT 282 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 R+ IV+TE+PYQVNKA ++++I ELV++K IV I+DL D S+ +G R+VI++K+G Sbjct: 283 DKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKGE 342 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A+++LN+L ++T LQ+ F + M+AL P+ L IL+ ++ R +V+ R+T + LN Sbjct: 343 EAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDLN 402 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA+DRAH+L GL A+ ++DE++ IIR S A+ L+ + Sbjct: 403 KAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK------------------ 444 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E+QT AIL++RL RLTGL R++I E + L + I + DIL+ R Sbjct: 445 --------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKY 496 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 IIK+E+L +K + RRT I ++ ED I ED++VT++ GY KR+ L Y+A Sbjct: 497 AIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTITKRGYAKRMSLDSYKA 556 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG S ++D + DLF T +++ FS G VY KV+ +P S QARGK + Sbjct: 557 QKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLI 616 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 NI+ L++ E+I+ I+P DE +N ++F T++G ++ K+S+F INR+GKIA+ Sbjct: 617 GNIIELDENEKISVIIPV--DEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISF 674 Query: 679 -DSRDEI--LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 D DE+ + + + +++++I ++TK G VRF IR GR + GVR I L D+V Sbjct: 675 KDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSM-GRTAAGVRAIKLNSNDEV 733 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S A V++ D + DE MS Sbjct: 734 VS-ADVIYTDNNVDE-------MS------------------------------------ 749 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-------RATDVSKINEIGALVAVFPVN 848 +L+V+ G GK+T ++ I R GKG+ R+ + S+ + + + P + Sbjct: 750 ----VLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEESEHHYVVYSTIIDPSD 805 Query: 849 DND---QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +N +++ +S GT+IR+ + ++ + R +KGV I S E +VS +R+ Sbjct: 806 ENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKEYLVSADRV 857 >gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51] Length = 828 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V+ NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL G++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNGVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D + Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645] Length = 833 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 N+ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 812 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/894 (40%), Positives = 534/894 (59%), Gaps = 89/894 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 VSI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++G + + K AR+ Sbjct: 4 QVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSARV 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+YDAL RMAQD+S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L D+ K+TVDFRPNYD + EP VL + PN+L+NG GIAVGMATNIP HNLGE Sbjct: 124 LAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 + + ++D P ++ LM+ ++GPDFPT + G+ +AY TGRG++ +RG IE Sbjct: 184 LCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEIE 243 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + + IV+ EIP+ +NK++++EKIA LV E++I +ADLRDESDR+G RVVI+LKRG Sbjct: 244 ERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKRG 303 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 D+++N LY+YT L+S F +NM+A+ G +P+ L L+ F+ R EV++RRT+Y L Sbjct: 304 TIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYDL 363 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LM Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALM------------------- 404 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 G LSE Q +AIL++RL RLT L + + E N L +I+ +L + L Sbjct: 405 -------GRFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVL 457 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +I++E+ ++D T RRT ++E LD D ED I ED+V+T+S GY+KR L Y Sbjct: 458 RSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDNY 517 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + QRRGGKG +GV ++DFV D + H +L F++ G +++ KV R+P GS A+G Sbjct: 518 QQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGV 577 Query: 617 ALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + N++ L++ E +T T+ F ED Y +F T+ G V+R+ S + + ++G Sbjct: 578 HIANLVQLDKDELVTNVLTVREFAEDR------YFLFVTRRGMVKRSSASLYAKCRKTGL 631 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V + I+LTT G +RF +R GR++ GV+GI+L D Sbjct: 632 IAVGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPM-GRSATGVKGIALRGKD 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V++ I+ E+ TS+ Sbjct: 691 RVVACVILAE--------------------------EDTTSM------------------ 706 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 I++VS GFGKRT + +R+ +R G G++ V+ + G ++ PV D+D + Sbjct: 707 ------IMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTP--KTGDVIGAMPVRDDDAL 758 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +L++ ++R+ +N++R RAT+GV + + VV +RI E E+VD E Sbjct: 759 VLLTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDEREVVDGEE 812 >gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277] gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277] Length = 872 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/919 (40%), Positives = 538/919 (58%), Gaps = 138/919 (15%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Sbjct: 6 ENNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGVGSRSP 65 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+DGD AA RY Sbjct: 66 YMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGAAAMRY 125 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ +L D+ KDTVDF PNYD EP VL +R PN+L+NG GIAVGMATNI Sbjct: 126 TEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVGMATNI 185 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H+L E++DG + V++N + L+ +M+ I+GPDFPTG +I G+ GI AY TGRG + + Sbjct: 186 PPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKL 245 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIEK +++ IVV E+PYQ NKA ++E+IAELV+EK+I I+++RDESD+ G RV Sbjct: 246 RAKTHIEKKP-NKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDKDGIRV 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK F+ R+ V++ Sbjct: 305 VIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHRKTVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + +AR L+ + Sbjct: 365 RRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK---------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AIL++RL++LTGL R+ + EL L EI +I Sbjct: 415 ----------------FGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + L +IK ELL +K++ PR T IV+ D++ ED I E+MVVT++H GY+KR Sbjct: 459 LKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV+++P GS Sbjct: 519 VPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGS 578 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+GKA++N++ L E+I I+P F E +S + F TK+G V+R LS+F Sbjct: 579 RTAKGKAVVNLIQLQPDEKIKAIIPTTDFAESKS------LAFFTKNGIVKRTNLSEFKN 632 Query: 668 INRSGKIAMKLDSRDEI------------------LSVETCTQEND-------------- 695 I G A+ LD DE+ L VET E + Sbjct: 633 IRSIGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSEEN 692 Query: 696 --------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740 + + TK G C++F +S +R GR + GV GI + GD+V+ A+ Sbjct: 693 DENAAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAGDEVVGAAV 751 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 + + D Q + Sbjct: 752 IENND----------------------------------------------------QEV 759 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 L++S+KG GKRT++ ++R++NR GKG+ ++ N G L+ V V+D ++ ++ G Sbjct: 760 LSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDDEQDLMALTSSG 817 Query: 861 TLIRVPVNEIRIASRATKG 879 +IRV + IR A R T G Sbjct: 818 KMIRVDMQSIRKAGRNTSG 836 >gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] Length = 823 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/905 (40%), Positives = 557/905 (61%), Gaps = 89/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K D Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ +++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E E V+ E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817 Query: 906 AESTE 910 ++TE Sbjct: 818 EQATE 822 >gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 827 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/888 (41%), Positives = 539/888 (60%), Gaps = 87/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++ K + K A Sbjct: 6 IVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YD+L R+ Q++S+R LI+GQGNFGSVDGD PAA RYTE R+ Sbjct: 66 RVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K TVDF N+D S +EP VL + PN+L NG GIAVGMATNIP NL Sbjct: 126 KSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG +A+I NP++++ LM+ + PDFPTG +I G G+++AY TGRG +VIR + Sbjct: 186 REVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIYGYEGVRSAYMTGRGKVVIRARAI 245 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E T + RE IVVTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR G R+VIEL Sbjct: 246 VEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A V+LN LY++T +Q F V M+AL P L ++ ++ R E+V+RRT+ Sbjct: 306 KRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMVYYIKHRNEIVLRRTQ 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L A RAH+L GL I + NLDEV+ IR SP+ TA+ L++R Sbjct: 366 FDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIER-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q++AILE+RL RLTG+ R I E + I+E IL S Sbjct: 412 ------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSP 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II++ELL V++ RRT IV D ED I +ED+V+T++H G++KR P+S Sbjct: 460 EKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVS 519 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG +G + +DFV +FI STH +LFF++ G + KV+ +P AR Sbjct: 520 GYRRQARGGKGVTGAQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAAR 579 Query: 615 GKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G+AL NI+ L QGE+I + DE ++V AT +G V++ L DF ++G Sbjct: 580 GRALANIMELQQGEKIRAYINIRNFDEPG----FIVMATTNGIVKKTPLEDFSHPRKNGI 635 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ +D DE+L ++ I+L G VRFP + IR GR ++GV+GI+L +G+ Sbjct: 636 AAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSM-GRTAMGVKGITLDEGE 694 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 + ISM +T+ + D++ Sbjct: 695 KCISM---------------------------------VTTKRFDTA------------- 708 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V++ GFGKR+ D+R++ R +G+ + ++GAL+ + VND+D + Sbjct: 709 ------LLAVTDNGFGKRSRVEDYRLTRRGARGV--ITLKAHEKVGALIGLLDVNDDDDL 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 I+++ +G + R V++IR+ R T GV + + + ++ R+ +S+ Sbjct: 761 IIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKSD 808 >gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977] gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977] Length = 804 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/879 (42%), Positives = 533/879 (60%), Gaps = 87/879 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M Q G+ +K+ K A Sbjct: 4 VLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ KYHPHG+ A+YDA+ R+AQ+W+LR LI+GQGNFGS+DGDP AA RYTE RL Sbjct: 64 GVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF N+DG+ +EP VL A +PN+L NG GIAVGMAT+IP HNL Sbjct: 124 SPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++ A+ID+P+I LD +M+ + GPDFPTG L R G+K AY TG+GS+ +R Sbjct: 184 GELINALAAMIDDPEITLDGVMQHLPGPDFPTGGR-LNRVGLKRAYETGKGSLRLRARVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ G R+ +VVTEIPYQVNKA+++ +IA LVR K++ DI+ LRDESDRQG R+VIELK Sbjct: 243 TEERGG-RKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ DV+LNQL++ T+LQ+ F++NM+A+ +P L+ +++A++ R EVVVRRT++ Sbjct: 302 RGANPDVVLNQLFKQTNLQTSFTINMLAIVNGEPRVLPLLAMMRAYLDHRREVVVRRTRF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DRAHVL GL IA+ +LDEV+ +IR S + A+ LMQR Sbjct: 362 DLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ +AIL++RL RLTGL R+ ++ E L I IL+ + Sbjct: 407 -----------FALSEVQAQAILDMRLQRLTGLEREKLQAEYRELQETIAYLRAILADET 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL G++K ELL+++++ RRT I E ED I E MV+T++ G++KR PL Sbjct: 456 RLWGVVKDELLAIREKFADERRTLITEFAEGFNPEDLIEDEPMVITMTAAGFLKRTPLED 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGG G +DED T +F+ H +LFF++ G VY+EKV+ LP ARG Sbjct: 516 YRAQGRGGMGAKAGRTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + L L +GE I ++ S + Y VFAT+ G V++ + D+ +N SG IA Sbjct: 576 THVKSFLPLEEGEEIKALLSL---RSLTDPGYFVFATRKGVVKKTAIRDYQNLNASGLIA 632 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L D+++ V +++ T+ G+ +RFP+ +R GR S GVRGI L +GD+V Sbjct: 633 INLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA-TGRASQGVRGIRLKEGDEV 691 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S+ IV+ D + D Sbjct: 692 VSL-IVVPKDWEGD---------------------------------------------- 704 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854 +L +S G+GKRT ++ + R G+G+ K+NE +G L A+ V+ ++ ++ Sbjct: 705 ----LLAISSHGYGKRTPLEEYPLQGRGGQGV---ITFKLNEKVGHLTALLAVDGDEDLL 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++S G IR V I SR T GV + + A + + S Sbjct: 758 VLSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAGDEIAS 796 Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust. Identities = 46/211 (21%), Positives = 98/211 (46%), Gaps = 17/211 (8%) Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V + G VK+ + Y Q G + + + D + D+ I + V+ + G Sbjct: 606 VFATRKGVVKKTAIRDY--QNLNASGLIAINLVEGDDLVDVRIAGSGAQVVMATRGG--- 660 Query: 600 KEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 K R P+ +A G+A + + L +G+ + +++ P+D W + ++ HG Sbjct: 661 --KAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKD---WEGDLLAISS-HGYG 714 Query: 658 RRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 +R L ++ R G+ I KL+ + + ++ + D+L+ ++ G +R + I Sbjct: 715 KRTPLEEYPLQGRGGQGVITFKLNEKVGHLTALLAVDGDEDLLVLSRGGLAIRTRVRTIS 774 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 ++ R + GV+ ++LA GD++ S ++ D Sbjct: 775 QYS-RPTSGVKVMNLAAGDEIASAFVIKPHD 804 >gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302] Length = 833 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 807 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTK 701 N V+ T++G +R K S++ R GK A + + + T + DILL T Sbjct: 709 NKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAGLTTVNGDEDILLITN 768 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 G +RF + ++ GR ++GVR + + G +V++MA+V Sbjct: 769 KGVIIRFNVDSVSQ-TGRATLGVRLMRMEDGAKVVTMAVV 807 Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30] Length = 828 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 TKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR I+ S +PE A+ L++R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GR++ GVRG Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRSARGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V++ D++ Sbjct: 694 IKLNENDFVVG-AVVINDDSNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IR+ + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRISIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] Length = 858 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/904 (40%), Positives = 550/904 (60%), Gaps = 87/904 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E+ I S + ++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV Sbjct: 1 MAEEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K++ K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGDP Sbjct: 61 TPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE RL K A +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG GIAVG Sbjct: 121 AAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNLGEV+ G ++ NPD+ LME I GPDFPTGA+++G++GI+ AY TG+ Sbjct: 181 MATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G + +R + IE +E I+VTE+PY VNKA ++E+IAEL R+KRI I + DESD+ Sbjct: 241 GVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+ IE++R SA V+LN LY+ T +Q+ FS NM+A+ +P+ +L +L A++ + Sbjct: 301 EGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGRPKLLSLKDMLVAYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRT++ L KA+ RAH+L GL IA+ ++D ++ IIR S E A+++LM Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLM------- 413 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 +D LS+ Q++AIL++RL RLTGL RD I E L I Sbjct: 414 -----VDYA--------------LSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL V+ + RRT + G + +EDED I ED++V+++H Sbjct: 455 DFQDILAKPERIDEIIYTELLEVQSKYGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+ S +RAQ RGG+G G+ + D+DF+ +L STH ++LFF++ G VYK K + Sbjct: 515 AGYIKRMLQSEFRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L + GE I T++ D S ++ Y+ F T+ G V+R +++ Sbjct: 575 EVPEYGRTAKGIPVVNLLGIESGESIQTVINVRGDASESSD-YLFFTTRQGVVKRTPVNE 633 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I G A+ L DE+++V + +I++ T G V F A+R GR++ GV Sbjct: 634 FGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSM-GRSAAGV 692 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+ L+ D V G Sbjct: 693 RGIT----------------------------------------------LRPDDYVVG- 705 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ + +L ++EKG+GK+T + I R GKGI+ V++ N G L + Sbjct: 706 ------AQVLIDNGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKN--GPLAGL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESE 901 V+ ++ I+L ++KG +IR V+ I RAT+GV + D V + VE + E Sbjct: 758 KVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKVEHVVAEE 817 Query: 902 IVDE 905 + DE Sbjct: 818 VDDE 821 >gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] Length = 823 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/905 (40%), Positives = 556/905 (61%), Gaps = 89/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K D Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---E 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV++ + E E V+ E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAV-EPEAVEQTVE 817 Query: 906 AESTE 910 ++TE Sbjct: 818 EQATE 822 >gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] Length = 911 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/715 (46%), Positives = 477/715 (66%), Gaps = 22/715 (3%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D++ K +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ WN Sbjct: 6 DQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWN 65 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 Y K AR+ G+V+GKYHPHG++A+Y + RMAQ +S+R +L++GQGNFGSVDGD AA Sbjct: 66 SAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAAAM 125 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K AH +L D+ +DTV+F NYDGS +EP+VL R+P +LVNG GIAVGMAT Sbjct: 126 RYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGMAT 185 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 +IP HNL + + GC+ ++ P+ D++ L++II+ PDFPTGA I G TGI+ Y TGRG + Sbjct: 186 SIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIYGLTGIRAGYQTGRGRV 245 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 VIR +HIE + E I+V EIPYQVNK+ ++EKI EL+REK + IA+LRDESD+ G Sbjct: 246 VIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESDKDGT 305 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELKR +A+VILNQLY+ T LQ FS+NMVAL +P L IL F+ R EV Sbjct: 306 RIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQPRLLNLKQILSEFLRHRREV 365 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT Y L KAR H+ G A+A++N+DE++ +I+ S + ++AR L+ R+W + + Sbjct: 366 VTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQSDLVS 425 Query: 429 DLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 ++++ D + + SDG +LS+ Q RAIL + L LTGL +D+I E Sbjct: 426 EMLNRSDLDLTMARPEWLPENRGLQSDG-YWLSDEQARAILRMSLRNLTGLDQDEIIKEY 484 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVRE 536 L I + LDIL+ R+ II EL++++ + RR+ I G D+ DED I Sbjct: 485 KELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIADEDLIPPR 544 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MVVT++H GY+K P S Y+AQ+RGG+G+ +DEDF+ LF+ +TH ++ F++LG Sbjct: 545 EMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 604 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATK 653 + KV+RLP G Q+RG+ + N++ L + E+++ I+P FPEDE YV FAT Sbjct: 605 RCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFPEDE------YVFFATA 658 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708 G V++ +LS F ++ G A+ L D ++ V + +DI+L + LG+ +RF Sbjct: 659 LGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRF 713 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT ++ G+GKRT ++ + G+GI A D + N G LV V+ +D ++L++ Sbjct: 789 VLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERN--GELVGAALVSPSDDLMLITSG 846 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G LIR V ++R RA +GV + + + +VS+ER+ E +EAE E Sbjct: 847 GVLIRTKVEQVRETGRAAQGVRLINLDEGTTLVSIERVAEENSDEEAELVE 897 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 52/245 (21%), Positives = 109/245 (44%), Gaps = 37/245 (15%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ++ V + LG VK+V LS ++ KG + ++D D + + S + ++ FS+L Sbjct: 650 DEYVFFATALGVVKKVQLSAFK--NVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNL 707 Query: 596 GFVYKEKVWRLPIGSPQARGKAL---------------INILSLNQGER-------ITTI 633 G + + P + + + N+L+ N+G R Sbjct: 708 GKAIRFNEFYNPTSNDDDESEDVSGSLNDDSDDENSDEFNLLT-NKGIRPSGRGSGGLRG 766 Query: 634 MPFPED--------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD--- 682 M PE+ ++L V+ AT++G +R + ++ + + G+ + +D+ + Sbjct: 767 MRLPENGRIVSLLVAELGSDLQVLTATQNGYGKRTPIENYSRKGKGGQGIIAIDTGERNG 826 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E++ + +D++L T G +R + +R GR + GVR I+L +G ++S+ V Sbjct: 827 ELVGAALVSPSDDLMLITSGGVLIRTKVEQVRE-TGRAAQGVRLINLDEGTTLVSIERVA 885 Query: 743 HADAD 747 ++D Sbjct: 886 EENSD 890 >gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] Length = 816 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] Length = 841 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 541/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA VILN LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV Sbjct: 303 IVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ NKA RAH+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+L II+ EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV S +RAQRRGG+G G+ + DEDFV L STH ++LFF++ G VYK K + +P Sbjct: 517 KRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ ERI I+ Y+ F T+ G V+R ++ F I Sbjct: 577 YGRAAKGIPVINLLGIDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V E+ +++ T G V F + +R GR + GVRGI Sbjct: 635 RANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD V+ A+ I+ D+E Sbjct: 694 LRDGDYVVGAAV------------------------ITEDSE------------------ 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++E G+GKRT ++ I R GKGI+ +++ N G L + V+ Sbjct: 712 -----------VLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + I+++++KG LIR V + RAT GV + + +VV++ Sbjct: 759 GEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTM 804 Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600 + LG VKR ++ + R G + +R+ D + ++ V+ + G+ +K Sbjct: 618 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 675 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 E + R R A + + L G+ + ED V+ T++G +R Sbjct: 676 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 724 Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 K S++ R GK A + + T + E DI++ T G +RF ++ + Sbjct: 725 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITNKGVLIRFNVATVSQ-T 783 Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741 GR ++GVR + + +V++MA V Sbjct: 784 GRATLGVRLMKMENNAKVVTMATV 807 Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 10/157 (6%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+V+ +H GY ++ R R G G+ +RD D+V +++ + VL + Sbjct: 659 EDVVIIGTHDGYSVTFKEALVRDMGRTAAGVRGIRLRDGDYVVGAAVITEDSEVLVITEN 718 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G+ + K PI +G NI + N T + ED ++ T G Sbjct: 719 GYGKRTKGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEED--------IMVITNKG 770 Query: 656 NVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETC 690 + R ++ Q R+ G MK+++ +++++ T Sbjct: 771 VLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMATV 807 >gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] Length = 874 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/927 (40%), Positives = 545/927 (58%), Gaps = 137/927 (14%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E++++ +++ I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENLLNQNQD----IQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+ Sbjct: 57 NNLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ +L D+ KDTVDF PNYD EP VL +R PN+L+NG Sbjct: 117 DGDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+L E++DG + V++N + L+ +ME I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIFGKKGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +HIEK +++ IVV E+PYQ NKA ++E+IAELV+EK+I I+++R Sbjct: 237 YRTGRGRVKLRAKTHIEKKP-NKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + +AR L+ + Sbjct: 356 FLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q AIL++RL++LTGL R+ + EL L Sbjct: 416 --------------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAEL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +IL S + L +IK ELL +K++ PR T IV+ D++ ED I E+MVV Sbjct: 450 MAEIARLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++ L E+I I+P + S + + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFAQSKS---LAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEI------------------LSVETCTQE--------- 693 LS+F I G A+ LD DE+ L VET E Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQID 686 Query: 694 ----ND----------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732 ND + + TK G C++F +S +R GR + GV GI + G Sbjct: 687 EENSNDGDKNGERTESDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAG 745 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ A++ E QE Sbjct: 746 DEVVGAAVI---------------------------------------------ENNAQE 760 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L+VS+KG GKRT++ ++R++NR GKG+ ++ N G L+ V V++ Sbjct: 761 -------VLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDEEQD 811 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG 879 ++ ++ G +IRV + IR A R T G Sbjct: 812 LMALTSSGKMIRVDMQSIRKAGRNTSG 838 >gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20] Length = 826 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/880 (41%), Positives = 546/880 (62%), Gaps = 93/880 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL+ E+I + + DE S + F TK G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLDPDEKIMATLSTKDFSDERS-----LAFFTKKGVVKRTNLSEF-DSN 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ LD DE++S + + +L+ + LG ++F + +R GR++ GV GI Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREI-GRSTRGVIGIK 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+V++ D++ Sbjct: 694 LNENDFVVG-AVVINDDSNK---------------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKG+ +++ + G LV+V V+ Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVSVISVD 759 Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 DENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 799 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L R+ V +I ASR G V + S DE++++ Sbjct: 555 HDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISLDPDEKIMA 601 >gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] Length = 871 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/889 (39%), Positives = 543/889 (61%), Gaps = 89/889 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM +G+ + K ARI Sbjct: 10 INIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKKSARIV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K Sbjct: 70 GEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + ++ D+ K+TVDF+ N+D + EP V+ + P +L+NG GIAVGMATN+P HNL EV Sbjct: 130 SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPHNLTEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++G +A ++N DI++D LM+ I+ PDFPTG +I G G++ A+ TGRG IV+R E+ Sbjct: 190 INGTLAYLENNDIEIDELMQHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMRAKVGFEE 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G RE I+V+EIPYQVNKA M+++ A+LV EK+I I+++RDESDR G R+V LKR A Sbjct: 250 VDG-RECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVYILKRDA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +V+LN LY+YT LQS FSVN +AL +P+ L ++ FV R +VVVRRTK+ L Sbjct: 309 TPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIHYFVEHRHDVVVRRTKFDLR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +RAH+L GL IA N+DEV+ +IR S N + A+ +L++R Sbjct: 369 KAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIER------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LS++Q+RAI+E+RL +LTGL +D +R E L I+ +L+ + Sbjct: 411 --------FKLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRT 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +IK+EL ++ + RR++I D+ ED I E++V+T+SH GY+KR L+ Y+ Sbjct: 463 ALIKEELEDMRAKYGDERRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNLNEYKT 522 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGG G+ RD DF+ +++ + H ++FF+ G Y +V+ +P GS A+G+AL Sbjct: 523 QNRGGVGQKSAGTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTAKGRAL 582 Query: 619 INILSLNQGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 N++++ +++ + + D ++ +NL +V TK G V++ L + + +G Sbjct: 583 QNLINIESDDKVKAFICTQDLKDKDYTTSHNLIMV--TKKGMVKKTSLDKYSKPRVNGVA 640 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733 A+ + DE+LS + + I++ K G+ +RF + R GR + GVRGI L + D Sbjct: 641 AITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPM-GRTASGVRGIRLKDESD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI + V ND + E Sbjct: 700 EVIGLVSV-----------------------------------NDMNSE----------- 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 IL V+E G+GKR+S ++RI+NR GKG++ ++++ + G L+++ V D D + Sbjct: 714 ------ILVVAENGYGKRSSLDEYRITNRGGKGVKTLNITE--KTGQLISINTVTDADDL 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 ++++ G IR+ V ++R+ RAT+GV + + + + +V ++ + ++ Sbjct: 766 MIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIAAVTKVMKDDV 814 >gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] Length = 868 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/885 (40%), Positives = 536/885 (60%), Gaps = 93/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K Y K A Sbjct: 14 VIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIFPDKAYRKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G V+G+YHPHG+A++YDAL RMAQD+SLR L++G GNFGSVDGDPPAA RYTE ++ Sbjct: 74 DTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ K+TV+F NYD +EP+VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 134 SKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D +IDNPD +L +M I+GPDFPT +I+G++GI+ AYATGRG I +R + Sbjct: 194 REVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAAYATGRGKIQVRARAE 253 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + R +IVVTE+PYQVNKA ++E IA V++KRI I+ LRDES+R+G R+VIELK Sbjct: 254 IEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDESNREGMRIVIELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 R A+ +ILN+LY +T +Q F V N+ +NG P+ TL +L+ ++ F+ EV+ +RT+ Sbjct: 314 RDANPQIILNKLYSFTQMQETFGVINLALVNGV-PKVMTLKEMLEHYIEFQSEVIRKRTE 372 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R H+L GL IA+ +DEV++ IR S ++ L++R Sbjct: 373 YDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER-------------- 418 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L E+Q AI+++RL +L+GL R I EL L +IKE IL Sbjct: 419 ------------FGLDELQADAIVKMRLGQLSGLERMKIEEELAGLLEKIKEYETILGDD 466 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + +L I+++EL +++D+ RRT I+ +++ ED I ED VVT++H GY+KR P Sbjct: 467 ALILVIVREELAAIRDKFGDERRTEILAVSGEVDIEDLIPEEDCVVTLTHYGYIKRQPTD 526 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +Y+ Q+RGG+G +G+ R+EDF +LFI STH +VLF ++ G +YK K + +P G ++ Sbjct: 527 IYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEGGRTSK 586 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G ++N+L + E++T+ I F D+ Y+V TK G ++R L + + ++ Sbjct: 587 GTNIVNLLPIEGDEKVTSMIRITDFDPDQ------YLVMVTKSGMIKRTVLDAYKNVRKN 640 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+ V + +++ T+ G +RF + R + R++ GVR I L Sbjct: 641 GLIAISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLS-RSAKGVRAIKLRG 699 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ MA RL G T Sbjct: 700 DDEVVGMA-----------------------RLREGAT---------------------- 714 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++TV+++G G+RT D+RI R G G VS +E G +VAV V+++D Sbjct: 715 --------VMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVS--DEKGHVVAVKVVDEDD 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +IL+S+ G +IR+ V+++ + SR GV + D RVV+ R Sbjct: 765 DLILISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARVVTFAR 809 >gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 823 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/889 (40%), Positives = 535/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] Length = 833 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTSVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012] Length = 828 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] Length = 823 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/905 (40%), Positives = 554/905 (61%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ ++GN Sbjct: 694 LREEDYVVGAAL----------------------------------------MKGN---- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] Length = 821 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/890 (40%), Positives = 535/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY TG+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ + L D V Sbjct: 691 RGINLRENDYVVGSGV----------------------------------LGKDDQV--- 713 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 714 ----------------LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I++++ G +IR ++ R+T GV + D +V S+ Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASL 805 >gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica] Length = 912 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++++DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 RSW +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 SRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G LIR V +IR RA GV + + + E +VS+ER+ E E + TE Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 40/240 (16%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + ++ FS+LG + + W Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632 LP G P RG + + L +I + Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690 ++ FP E+ + L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L T Sbjct: 782 LITFPA-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840 Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ V + + D Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899 Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + + KV ++ R A + +++L++GE + ++ E+E+ Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896 >gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] Length = 829 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/833 (43%), Positives = 514/833 (61%), Gaps = 84/833 (10%) Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA Sbjct: 4 DKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA 63 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMA Sbjct: 64 MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMA 123 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGS Sbjct: 124 TNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGS 183 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306 I +R + IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R Sbjct: 184 IQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT 243 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ Sbjct: 244 GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQK 303 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 304 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR------ 357 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE Q +AIL++RL RLTGL RD I E N L I E Sbjct: 358 --------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISE 397 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545 IL+ LL +++ EL ++D RRT I + G D+EDED I E +V+T+SH Sbjct: 398 LEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHN 457 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 Y+KR+P+S YRAQ RGG+G G+ +EDFV+ L +STH VLFF++ G VYK K + Sbjct: 458 NYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYE 517 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S Q++G ++N + L E I+T++ + ES N ++VFATK G V+R+ LS+F Sbjct: 518 VPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDN--FLVFATKRGVVKRSALSNF 575 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 +INR+GKIA+ DE+++V + + DIL+ T +RFP S +R GR + GV+ Sbjct: 576 SRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVK 634 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD+V+ + V HA++ DE Sbjct: 635 GITLREGDEVVGLD-VAHANS-VDE----------------------------------- 657 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +L V+E G+GKRT D+R+SNR GKGI+ +++ N G +V + Sbjct: 658 --------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCIT 701 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 V + +++V++ G +IR+ V +I RA +GV + D+ V +V +++ Sbjct: 702 TVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754 >gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 838 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] Length = 841 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/900 (39%), Positives = 543/900 (60%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+ SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL +AQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + + D+ KDTVDF PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID+ + ++ +++II+GPDFPTGA ILG GI+ AY TGRG I + Sbjct: 189 REVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +++IE + +I+VTE+P+ VNKA ++EKIAELVR+K+I I DL D+S R+G R+ Sbjct: 249 RAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQSSREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R + +VILNQLY++T LQ F V M+AL G +P+ L+ +L ++ +E+VV Sbjct: 309 CIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVGNQPKVMNLLEMLNYYLKHQEDVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA++RAH+L GL IA+ N+DEV++IIR S N + A++EL++R Sbjct: 369 RRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ +AI+++RL LTGL R+ I E L +I+E I Sbjct: 419 ----------------FGLSEVQAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + LLG+IK+E+L + ++ RRTRI D+ ED I RE++V+T++ LGY+KR Sbjct: 463 LADKKLLLGVIKKEILVISEKYGDDRRTRIGYDEFDISMEDLIPRENVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + +++Q RGGKG G+ ++D++ +LF+ ++H ++FF++ G VY+ K + +P Sbjct: 523 MTMDTFKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN+L L E+IT I+P E E Y+ AT+ G V++ + D+ + + Sbjct: 583 RTARGTAIINLLQLMPEEKITAIIPLREYEEGK---YLFMATEKGLVKKTPIQDYANVRK 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+ L D ++ V+ DILL T+ G C+RF + +R GR S+GVRG++L Sbjct: 640 TGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRS-TGRVSMGVRGMNLT 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D VI M A D I K M + N+ E Sbjct: 699 DNDVVIGMQT---ASQGTDLLIVSEKGMGKRT---------------------NMDE--- 731 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 T +G GK Y +I+ ++G +V + V+++ Sbjct: 732 ----------FTRQNRG-GKGVKCY--KITEKTGN---------------VVGMKAVDED 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +I++++ +G +IR+ ++I + R T GV + + + ++V SV ++R++ + E E Sbjct: 764 SEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVAKVRKASAEIDGEQVE 823 >gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis] gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76] gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137] gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000] gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017] gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027] gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141] gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244] gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031] gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043] gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312] gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342] gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346] gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B] gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A] gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62] Length = 833 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 823 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/889 (39%), Positives = 535/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRI++GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6] Length = 859 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/888 (40%), Positives = 534/888 (60%), Gaps = 87/888 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + + Y K A G Sbjct: 20 VKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGA 79 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + A Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+++ PN+D + +EP VL R+PN+LVNG GIAVGMATNIP HNL EV+D Sbjct: 140 EMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 GCVA I++PDIDL LME I+GPDFPT +I+GR+GI+ AYATGRG I +RG + IE+T Sbjct: 200 GCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R QI++TEIPY VNKA ++E +AELV++KRI I L DE++R+G R+V+++++ A+A Sbjct: 260 NGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDANA 319 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 VILNQLY+YT LQ V M+A++ P+ TL +++ +V F++EVV RRT+Y L KA Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKA 379 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++RAH+L GL A +DE++ IR + + + D Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 Q AI++L+L RL GL I EL+ L +I++ DIL++ +R+L I Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELSGLQAKIEDWEDILANDARVLEI 474 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K ELL +K RRT I +++ ED I E V T++ GY+KR + Y+AQ+ Sbjct: 475 VKNELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQK 534 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G SG+ ++ED V ++F+ STH VLF + G +++ K + + GS ++G +IN Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIIN 594 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE++T ++ +P+DE + +V TK G ++R L + I ++G I + L+ Sbjct: 595 LLQLAEGEKVTNMLCYPKDEDNKGG-FVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNE 653 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D + T + +++ T+ GQ +RF + R GR+ GVR I LA+GD+V+ + I Sbjct: 654 GDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPM-GRSGHGVRAIKLAEGDEVVGVCI 712 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 C+E + Sbjct: 713 -------------------------------------------------CRE----GGTV 719 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G G+R+ +RI+ R GKGIR D SK + AV V+D D ++L S +G Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----DKVAAVKIVDDIDDVLLSSQEG 775 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +IR+ NEI + SR GV + ++++V+ + R DEA++ Sbjct: 776 IIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQT 820 Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 101/243 (41%), Gaps = 42/243 (17%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT--------DLFIVSTHTSV 589 V V+ G +KR PL Y R+ G G+ + + D + D+ IV+T Sbjct: 620 FVTMVTKQGLIKRTPLEQYANIRK--TGLIGIALNEGDALAWTRLTTGNDMLIVATR--- 674 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + E R P R + + L +G+ + + E + V+ Sbjct: 675 ---NGQAIRFNEADAR-----PMGRSGHGVRAIKLAEGDEVVGVCICREGGT------VL 720 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRF 708 T++G RR+ + + R GK D S+D++ +V+ +D+LL+++ G +R Sbjct: 721 TVTENGKGRRSDIDTYRITARGGKGIRNYDASKDKVAAVKIVDDIDDVLLSSQEGIIIRL 780 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + I V + R GVR + L + D+V+ +A H D AQ I D Sbjct: 781 HANEIPVQS-RYGSGVRVMRLGENDKVMVLARTDHDD-------------EAQTESIEAD 826 Query: 769 TEE 771 TE+ Sbjct: 827 TED 829 >gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716] Length = 836 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%) Query: 10 EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+E G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 123 RYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GSI Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EEV Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DD S LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ + R+ II EL+ ++++ RRT + G + ++EDED I ED++VT++H GY Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + +P Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINIAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD +I A L D V Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + V Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+DKG +IR V + R+ GV + D V ++ ++ +E+ D Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819 Query: 907 EST 909 E++ Sbjct: 820 EAS 822 >gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707] Length = 860 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/878 (40%), Positives = 524/878 (59%), Gaps = 86/878 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G +N KCA Sbjct: 8 IIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+++GKYHPHG++++Y+ L R+AQ W++R L++GQGNFGS+DGD PAA RYTE RL Sbjct: 68 RAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ +TVDF+ N+DG F+EP VL R PN+L+NG GIAVGMATN+ HNL Sbjct: 128 NQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNL 187 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E ++ C+A ID +I +D LM+ ++ PDFPTG VI G G+K A+ TGRG IVIRG + Sbjct: 188 TETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRIVIRGKA 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G E+IV+ EIPYQV K+ M+ KIA+LV EK+I I+D+ DES +G R+VI++ Sbjct: 248 DIEEYHG-HERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDI 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+A V+LN LY+Y+ L+S FSVN +AL +P L ++ FV R +VV RR + Sbjct: 307 KKDANAGVVLNYLYKYSDLESYFSVNNIALVHGRPRLLNLKDLIGHFVDHRHDVVTRRAQ 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++R H+L GL IAV ++DEV+RIIR S A LM+ ++N Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME-AFN----------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q RAI+++RL +LT L D +++E N L I LS Sbjct: 415 --------------LSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDI 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + +I++E + D+ RR+ IV D+ ED EDMV+T+SHLGY+KR PLS Sbjct: 461 NMRMELIQEECREIIDKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLS 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R Q RGG G G RDEDFV ++ + H +++ F++ G VY +V+ +P GS ++ Sbjct: 521 EFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSK 580 Query: 615 GKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+ + N+L L++ R+T + + D+ N Y+VFAT+ G +++ L+ + ++ Sbjct: 581 GRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKT 640 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730 G A+ L D+++SV +I L + G+CVRF +R GR + GVRGI L Sbjct: 641 GVRAINLRGDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVRGIRLDD 699 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M + Sbjct: 700 DPNDKVVGMVV------------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 LK ++ IL +SEKG+GKR+ D+RI+ R KG++ +V+ ++ G L+ + V D Sbjct: 711 -HRLKNSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVT--DKTGQLIDIRAVED 767 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 +D I++++ G IR+ + ++R+ RAT+GV + K Sbjct: 768 DDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNK 805 >gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779] gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 827 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/882 (40%), Positives = 531/882 (60%), Gaps = 89/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM+ +YL YA++VI+ RA+PD RDGLKPV RRIL+ M + G+ N +Y KCA Sbjct: 6 VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ KYHPHG+A++YDAL R+AQ W++R L++GQGNFGSVDGD AA RYTE RL Sbjct: 66 GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A LL D+ +DTV+F PN+DG +QEP+VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+ DG ++DNPD ++ L++ I GPDFPTG ILG GI +AY++GRG I+IR +H Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKAH 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + IVVTE+PYQVNKA ++E+IAELV++KRI I D+RDESDR G R+VI LK Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIILK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRT 373 + A +LN L++YTS+Q+ F NM+AL +G +P +L L+ ++ R+ V+ RRT Sbjct: 306 QDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L KA+ RAH+L GL IA+ LDEV+ IR S ETAR LM+ Sbjct: 366 EHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMK-------------- 411 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE+Q++AILE++L RL GL R I +E + I + DILS Sbjct: 412 ------------NFKLSELQSQAILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSK 459 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ IIK ++ +K++ RR+RI+ + D+ ED I +++VTV+ GY+K++P Sbjct: 460 PERVFKIIKDDVAELKEKYGDVRRSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLP 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 YR Q RGG+G G+ +++D V L + +T +LFF++ G VY+ KV +P S Sbjct: 520 GDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRT 579 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A+G L+N++SL GE +T+++ P+ + + Y+V T G ++R KLS++ + +G Sbjct: 580 AKGLPLVNLISLEPGELVTSLIAVPDFD---DGEYLVMTTVKGRIKRTKLSEYSSVRSNG 636 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ LD+ DE+ V+T + DIL+TT+ GQ +RF + +R GR + GV GI ++ Sbjct: 637 LIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRPM-GRPASGVIGIKMSAK 695 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 DQV+ M +V + DS Sbjct: 696 DQVVGMDLV----------------------------------RPDSQ------------ 709 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L ++ G GKRT D+ + R+ +G+ ++ + A + D+D Sbjct: 710 -------LLVITSHGMGKRTDLEDYPVKGRATQGVITM---RLKPGDIIAAALVLTDSDI 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ G ++R ++I R T+GV + + K + V +V Sbjct: 760 VTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAV 801 Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust. Identities = 55/264 (20%), Positives = 113/264 (42%), Gaps = 17/264 (6%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 +V T G +++ + NR G+ M D + + C ND+L T G+ Sbjct: 506 LVTVTDRGYIKKLPGDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKV 565 Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762 + + + A R + G V ISL G+ V S+ V D+D+ Y+ + + Sbjct: 566 YQLKVHEVP-DASRTAKGLPLVNLISLEPGELVTSLIAV----PDFDDG-EYLVMTTVKG 619 Query: 763 RLISGDTEEITSLKNDSSVEGNIS---EERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 R+ E +S++++ + + E R + ++ IL ++ G R S + R Sbjct: 620 RIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRP 679 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R G+ +S +++ + V P + Q+++++ G R + + + RAT+G Sbjct: 680 MGRPASGVIGIKMSAKDQVVGMDLVRP---DSQLLVITSHGMGKRTDLEDYPVKGRATQG 736 Query: 880 VVIFSTAKDERVVSVERIRESEIV 903 V+ + + + + +S+IV Sbjct: 737 VITMRLKPGDIIAAALVLTDSDIV 760 >gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56] Length = 836 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 9 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 69 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +DS Sbjct: 699 EGDYVVG-----------------------------------TSRIDDS----------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907 + +++++D G +IR V I RA +GV + + ++V+ V+ + E E VD E Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823 Query: 908 STE 910 T+ Sbjct: 824 LTD 826 >gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 823 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341] Length = 833 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 544/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSTEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + ST K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSTEKIQAIISVE 605 >gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118] Length = 820 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/890 (40%), Positives = 535/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY TG+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ + L D V Sbjct: 691 RGINLRENDYVVGSGV----------------------------------LGKDDQV--- 713 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 714 ----------------LVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I++++ G +IR ++ R+T GV + D +V S+ Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASL 805 >gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] Length = 857 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/894 (39%), Positives = 538/894 (60%), Gaps = 89/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ ++I E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F ++ +N+ Sbjct: 3 EAQDGQHPQINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNR 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++A+YDAL R+AQ++S+R L++GQGNFGS+DGD AA R Sbjct: 63 PHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A L DL K+TVDFRPNYD + QEP V+ + PN+L+NG GIAVGMATN Sbjct: 123 YTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+ D ++DNP +D LME ++GPDFPT + G+ +AY TGRG++ Sbjct: 183 IPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGKGLYDAYHTGRGTVK 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ + +V+ EIP+ +NK++++EKIA LV +++I IADLRDESDR+G R Sbjct: 243 MRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+LKRG D+++N LY++T L+S F +NM+A+ +P TL L FV R EVV Sbjct: 303 IVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNRPVLLTLKSALSCFVDHRREVV 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRT+Y L KA RAH+L GL IA+ ++D+VV +IR S NPE AR+ LM Sbjct: 363 IRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLM----------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE+Q RAIL++RL RLTGL R+++ E L +I+ Sbjct: 412 ---------------ATFELSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKS 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L + L +K+E+ +++ TPRRT ++ E L ++ ED I +++V+T+S GY+ Sbjct: 457 VLDNSEVLRSEMKREIREIRETFVTPRRTEVLTEALGGIDIEDLIPDDEVVITLSRRGYM 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y+ Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P Sbjct: 517 KRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 GS A+G + N+L L +GE +TT++ F ED+ Y +F T+ G V+R+ S + Sbjct: 577 GSRTAKGVHINNLLPLEEGEWVTTVLALREFAEDK------YFLFVTRRGMVKRSSASLY 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + ++G +A+ L DE++ V ++N I+L T G +RF IR GR + GV+ Sbjct: 631 ARCRKTGLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPM-GRVATGVK 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L + D V++ +VL D ++ T Sbjct: 690 GIALRRQDSVVA-GVVLK------------------------DVDQTTE----------- 713 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 I+++S G+GKRT +R+ +R GKGI V+ + G +V Sbjct: 714 --------------IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTA--KTGPVVGAM 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 PV DND +IL++ ++R+ V+E+R RAT GV++ + RVV +R+ E Sbjct: 758 PVRDNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRLDEGARVVGFDRVDE 811 >gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147] gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 836 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 9 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 69 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +DS Sbjct: 699 EGDYVVG-----------------------------------TSRIDDS----------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907 + +++++D G +IR V I RA +GV + + ++V+ V+ + E E VD E Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 823 Query: 908 STE 910 T+ Sbjct: 824 LTD 826 >gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d] Length = 828 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/882 (41%), Positives = 547/882 (62%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL+ E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLDPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + ++ +L+ + LG ++F + +R GR + GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V++ D++ Sbjct: 694 IKLNENDFVVG-AVVINDDSNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKG+ +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLDPDEKIMA 601 >gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica] Length = 912 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 RSW +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G LIR V +IR RA GV + + + E +VS+ER+ E E + TE Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + ++ FS+LG + + W Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632 LP G P RG + + L +I + Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690 ++ F E+ + L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L T Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840 Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ V + + D Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899 Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + + KV ++ R A + +++L++GE + ++ E+E+ Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896 >gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 809 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/891 (40%), Positives = 561/891 (62%), Gaps = 86/891 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 ++ +E E GI V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ + Sbjct: 1 MTDTKEFENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y K AR+ G+VMGKYHPHG+++IY+A R+AQD+++R L++GQGNFG++DGD Sbjct: 61 VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE ++ K A +L D+ KDTV+F PN+D +EP +L +R+PN+LVNG GIAVG Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HN+ EV+DG V ID+ DI + L E+I+GPDFPTGA+I+GR GI AY TGR Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G I +R V+ I + REQI++TE+PYQVNK+A++ KIAEL ++K I I+ + D S++ Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 +G R+VI+LK+ A+A+V+LN+LY+ T LQ + + +AL +P+ L +++ +V + Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 EV+ RRT++ LNKA RAH++ GL IA+ N+D V++IIR S Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSS-----------------K 403 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D K++I+ D L+++Q++AIL++RL RLTGL R+ ++NE + L +IK Sbjct: 404 DDKEVIEKFDRE---------FSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 +IL + L+ +IK ELL +KD+ RRT I D++ ED I ED+++T++ Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQF 514 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P Y+ Q+RGG+G + + +++DFV +LF+ STH +LFF++ G VY+ K + Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G A++N+L+L++GE+IT+++ E + Y++ T+ G +++ +F Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPDH---YLLMVTEKGLIKKTSNKEF 631 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I ++G I +KL D+++SV + +I+L TK G+ +RF +R GRN++GV+ Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L + D ++S IV GD GN Sbjct: 691 SMNLDEDDTIVSSDIV-------------------------GD--------------GN- 710 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++LTVSE GFGK T ++R NR GKGI +S+ + G + A Sbjct: 711 -------------YLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 VN +D I+L++D G +IR+ +++I + SR T GV + + D ++V++ + Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMN-LNDSKIVAIAK 805 >gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 823 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] Length = 832 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] Length = 833 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] Length = 860 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/878 (40%), Positives = 522/878 (59%), Gaps = 86/878 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G +N KCA Sbjct: 8 IIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G++MGKYHPHG++++Y+ L R+AQ W++R L++GQGNFGS+DGD PAA RYTE RL Sbjct: 68 RAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ +TVDF+ N+DG F+EP VL R PN+L+NG GIAVGMATN+ HNL Sbjct: 128 NQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNL 187 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E ++ C+A ID +I +D LM+ ++ PDFPTG VI G G+K A+ TGRG IVIRG + Sbjct: 188 TETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRIVIRGKA 247 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ E+I++ EIPYQV K+ M+ KIA+LV EK+I I+D+ DES +G R+VI++ Sbjct: 248 DIEEYHS-HERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDI 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+A V+LN LY+Y+ L+S FSVN +AL +P + L ++ FV R +VV RR + Sbjct: 307 KKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDVVTRRAQ 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++R H+L GL IAV ++DEV+RIIR S A LM+ ++N Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME-AFN----------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE+Q RAI+++RL +LT L D +++E N L I LS Sbjct: 415 --------------LSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDI 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + +I++E + ++ RR+ IV D+ ED EDMV+T+SHLGY+KR PLS Sbjct: 461 NMRMELIQEECREIIEKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLS 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R Q RGG G G RDEDFV ++ + H +++ F++ G VY +V+ +P GS ++ Sbjct: 521 EFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSK 580 Query: 615 GKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+ + N+L L++ RIT I D N Y+VFAT+ G +++ L+ + ++ Sbjct: 581 GRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKT 640 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L D+++SV +I L + G+CVRF +R GR + GVRGI L Sbjct: 641 GVRAINLRDDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVRGIRLDN 699 Query: 732 --GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+ M + Sbjct: 700 DPNDKVVGMVV------------------------------------------------- 710 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 LK ++ IL +SEKG+GKR+ D+RI+ R KG++ +V+ ++ G L+ + V D Sbjct: 711 -HRLKNSDETILVISEKGYGKRSRIDDYRITKRGAKGVKTINVT--DKTGQLIDIRAVED 767 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 +D I++++ G IR+ + ++R+ RAT+GV + K Sbjct: 768 DDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNK 805 >gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] Length = 825 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/885 (41%), Positives = 539/885 (60%), Gaps = 85/885 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RY Sbjct: 63 HKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNI Sbjct: 123 TEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ +++NP++ + LME++ GPDFPTG +++G++GI+ AY TG+GSI + Sbjct: 183 PPHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+ Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+++R SA VILN LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ NKA RAH+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMER---------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AIL++RL RLTGL RD I NE SL I + DI Sbjct: 413 ----------------FSLSDRQAQAILDMRLRRLTGLERDKIENEYQSLLELIADLKDI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549 L++ R+L II+ EL + RRT ++ G +L +EDED I E++V+T+++ GY+K Sbjct: 457 LANPQRVLEIIQTELQELGQRFGDERRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RV S +RAQRRGG+G G+ + DEDFV L STH ++LFF+++G VYK K + +P Sbjct: 517 RVANSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEY 576 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G +IN+L ++ ERI I+ Y+ F T+ G V+R ++ F I Sbjct: 577 GRAAKGIPVINLLGIDSNERIEAII--SASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ L DE+++V ++ +++ T G V F +R GR + GVRGI L Sbjct: 635 ANGLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFKEELVRDM-GRTAAGVRGIRL 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D V+ +++ K DS V Sbjct: 694 REDDYVVGASVI----------------------------------KEDSEV-------- 711 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 L ++E G+GKRT ++ I R GKGI+ +++ N G L + V+ Sbjct: 712 -----------LVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSG 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + I+L++DKG +IR V + RAT GV + +VV++ Sbjct: 759 KEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTM 803 >gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] Length = 829 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/903 (41%), Positives = 550/903 (60%), Gaps = 89/903 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 2 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +DS Sbjct: 692 EGDYVVG-----------------------------------TSRIDDS----------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 706 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDEAE 907 + +++++D G +IR V I RA +GV + + ++V+ V+ + E E VD E Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 816 Query: 908 STE 910 T+ Sbjct: 817 LTD 819 >gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 835 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 546/904 (60%), Gaps = 88/904 (9%) Query: 9 DEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 DE+E ++ V +I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ Sbjct: 9 DEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKEMGLK 68 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 N Y K ARI G+V+GKYHPHG++A+Y A+ RM QD+SLR +I+GQGNFGS+DGD A Sbjct: 69 HNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDGDFAA 128 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ +L DL K+TVDF PNYDGS +EPV+L + P++L+NG GIAVGM Sbjct: 129 AMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGIAVGM 188 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HN+ EV D V +ID+ +I + +++ I+GPDFPTGA+ILG++GIK+ GRG Sbjct: 189 ATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIKDYMEKGRG 248 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 S+ IR + IE+ RE I+V EIPYQVNKA ++ IA+LV++K+I IADLRDESDR Sbjct: 249 SVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDESDRD 308 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+KR A+ V+LNQLY++T +Q F V M+AL +P+ + IL + R+ Sbjct: 309 GIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEILIHHIEHRK 368 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +++RRTK+ L KA R H+L GL IA+ N+D V++II+ S + + AR LM + Sbjct: 369 VIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK------ 422 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + L+++QT AILE+++ +LTGL R +I +E L I++ Sbjct: 423 --------------------LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEK 462 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +L+ ++L IIK E L +K + RRT+I D ED I E++ VT+SH G Sbjct: 463 LRSVLADPKKVLDIIKNEALDIKRKYGDKRRTQIQAAEADFNIEDLIQEEEVAVTMSHAG 522 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR+PL Y+AQ RGG+G + + R+EDFV +LFI S+H+ +LFF++ G +Y +++ + Sbjct: 523 YIKRIPLDTYKAQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEI 582 Query: 607 PIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLS 663 P G+ ++GKA++N+L L QG E+IT +P + + Y++ T++G +++ L Sbjct: 583 PEGARTSKGKAIVNLLQL-QGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKIALD 641 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 FI + G IA+KL+ D + V+ + ++++ TK G +RF S IRV GR G Sbjct: 642 KFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI-GRAGRG 700 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+GI L KGD+VI M + S D ++ +N Sbjct: 701 VKGIELKKGDEVIGMEV------------------------FSPDDVFLSISENGYGKRT 736 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + R Q+ G G + ++S R+G ++ Sbjct: 737 KVGKYRLQK------------RAGHG----VINMQMSERNGN---------------MIG 765 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + ND +++++++ G IR+ VN I + R T+GV + ++V ++ + + E Sbjct: 766 IKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKDENS 825 Query: 904 DEAE 907 +E + Sbjct: 826 EEPQ 829 >gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679] gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679] Length = 823 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K D Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 833 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45] gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45] Length = 919 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/893 (39%), Positives = 537/893 (60%), Gaps = 90/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+G GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I +ADLRDES+R G R Sbjct: 309 VRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ LNKA+DR H+L GL +AV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSAR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FNLSEKQTKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIIS 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 ILS + L +I EL +K++ RRT I + L ++DED I + D+V+T S GYV Sbjct: 523 ILSDKKLLTELIIDELTEIKNKFADDRRTVIDKNLSASIDDEDLITKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D + + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + Q++G + INI L +++GE++ +++ DE S +N Y+ ATK G +++ LS+F Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DNKYLFTATKLGIIKKTSLSEF 699 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IN +GK A L DE++ + +LL + V+F + R + R + GV+ Sbjct: 700 QIININGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHSNEFRALS-RIATGVK 758 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+LA + IS + SS EG Sbjct: 759 GITLADDETCISAS---------------------------------------SSSEG-- 777 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILT+ GFGK T FR+ +R GKG+ + K G LV Sbjct: 778 ------------ELILTIGRNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VN +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ Sbjct: 823 FVNPHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVK 875 >gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 823 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D ++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDALLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] Length = 823 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K D Sbjct: 694 LREEDYVVGAAL----------------------------------MKED---------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 Q +L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 710 ---------QEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] Length = 836 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%) Query: 10 EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+E G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 123 RYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GSI Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EEV Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DD S LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ + R+ II EL+ ++++ RRT + G + ++EDED I ED++VT++H GY Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + +P Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD +I A L D V Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + V Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+DKG +IR V + R+ GV + D V ++ ++ +E+ D Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819 Query: 907 EST 909 E++ Sbjct: 820 EAS 822 >gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni] gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] Length = 866 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/887 (40%), Positives = 535/887 (60%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV +K + K A Sbjct: 15 IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSVDGDP AA RYTE RL Sbjct: 75 RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG GIAVGMATNIPTHNL Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +RDESD+ G R+ I++ Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A++ + E++ RRT++ Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R I E L I++ DIL+ Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDILAKPE 468 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II QELL + ++ RRT + G + +EDED I E+++++++H GY+KR+ S Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGG+G G+ D+DFV L STH ++LFFS G VYK K + +P QA+ Sbjct: 529 EFHTQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L L+ GER+ ++ D ++ + ++ F TK G V+R +S+F I +SG Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKRTAVSEFTNIRQSGLR 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D ++SV + +I++ + G V F S +R GR + GVRG++L D Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + LI GD Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++EKG+GK+T+ ++ I R GKG + +++S N G L + V+ ++ I+ Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +D G +IR ++ I RAT GV + + +V ++ ++ + E Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818 >gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 823 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/889 (39%), Positives = 534/889 (60%), Gaps = 86/889 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V Sbjct: 3 NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+TVD++ NYD + EP VL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM+ I GPDFPTG +++GR G+ +AY +G+G Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R + IE RE+I+V+EIPY VNKA +++KIAEL R+K I I +RDESD+ Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +QS F++NMVA+ P+ TL +L+ ++A +E Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRTK+ L KA RAH+L GL +A+ ++DE+V +IR S + + A+ L+ R Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT+I ++ +EDED I +D+++T+SH Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GYVKR+ + ++ Q RGG+G G+ ++ DF+ L STH + F+++ G VY +K + Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L++GE I T++ P+ ++ Y F TK G V+R K+ +F Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNLPQ---GHDDDYAFFITKLGTVKRTKIREF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA+ L DE+ +V T + +IL+ T G V F +R GR++ GVR Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+L +GD V+ I LK + V Sbjct: 693 GINLREGDYVVGSGI----------------------------------LKPEDEV---- 714 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 LT+SEKG+GKRT++ ++ + R GKGI+ + + N G L V Sbjct: 715 ---------------LTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+ I+L++ G +IR +++ R+T GV + A V S+ Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASM 806 >gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 814 Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/895 (41%), Positives = 536/895 (59%), Gaps = 115/895 (12%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I DEM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +N Y K ARI Sbjct: 9 INIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKSARIV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEV+GKYHPHG++++YDA+ RMAQ++SLR +L++GQGNFGSVDGDPPAA RYTE RL + Sbjct: 69 GEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEARLTRL 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ KDTV+F PN+D S +EP VL +R P +L+NG GIAVGMATNIP HNL E+ Sbjct: 129 AGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHNLTEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 D +IDNP+ L+ LM+ ++GPDFPTG +ILGR GIK+AYATG G +V+R +H+ Sbjct: 189 CDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARAHVAD 248 Query: 259 T--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 +G R QI+++E+PYQVNKA ++++IA L RE++I IA++RDESDRQG RVVIELKR Sbjct: 249 VAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVIELKR 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 ILN LY++T+LQ+ F VNM+AL +P L L +VAFR+E++ RR+K+ Sbjct: 309 DGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRRSKFE 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L AR RAH+L GL IA+ NLD ++ +IR + N +TARRELM R Sbjct: 369 LKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 LS++Q +AIL+L+L RL L R I E + +I D+L++ + Sbjct: 413 ----------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRK 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L ++K +L VK RRT I +G+++ +ED I + MVVT++ G++KRVP V Sbjct: 463 VLSLVKDDLAEVKARYGDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEV 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-AR 614 YR Q R G+G+S + R+ D V + + TH SVL F++ G ++ K +P + A+ Sbjct: 523 YRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAK 582 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G A+IN++ L + ERIT+++ F E+ S ++ AT G +R KLSDF + S Sbjct: 583 GIAIINLVPLAENERITSMIAVSRFDEETS------LIMATSGGECKRTKLSDFAAVRSS 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G +AM L DE++ + +I+L T G+ + FP++ +RV + R S GVRGI+L Sbjct: 637 GLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRV-SQRASGGVRGITLEG 695 Query: 732 GDQVISMAI------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 D+V + + VL ++ ++ QRR SG Sbjct: 696 DDRVAGLDVARPGHFVLVVTTGGYGKLTAVEEYPLQRRAGSG------------------ 737 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LT F++ +++GK VA Sbjct: 738 --------------VLT--------------FKVVDKTGK----------------VAAG 753 Query: 846 PVNDND-QIILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVS 893 V D + Q+++ + +G +IR PV I + R+T+GV++ +++RVV+ Sbjct: 754 KVVDREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIRPDENDRVVN 808 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 84/162 (51%), Gaps = 17/162 (10%) Query: 746 ADYDERICYMKHMSAQRR----LISGDTEEITSLKNDS-----SVEGNISEERCQELKLK 796 AD ++I Y++ + A R L+ D E+ + D+ +G I E R ++L Sbjct: 444 ADILKQISYLEDLLANPRKVLSLVKDDLAEVKARYGDARRTEIQSQGVI-EFREEDLIPH 502 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + ++T++E+GF KR + +R+ +R+G+G + K E ++ + + +D ++L Sbjct: 503 QSMVVTLTERGFIKRVPTEVYRLQHRAGRG---KSIIKTREADSVRFIMVADTHDSVLLF 559 Query: 857 SDKGTLIRVPVNEIRI-ASRATKGVVIFS---TAKDERVVSV 894 +++G + + +EI R KG+ I + A++ER+ S+ Sbjct: 560 TNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSM 601 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 7/109 (6%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854 +E ++ + G KRT DF SG + A D+ K +E IGA++A ++ II Sbjct: 609 EETSLIMATSGGECKRTKLSDFAAVRSSG--LLAMDLPKNDELIGAVIA----GADENII 662 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 L++ G I PV ++R++ RA+ GV + D+RV ++ R V Sbjct: 663 LITHNGRSIHFPVADLRVSQRASGGVRGITLEGDDRVAGLDVARPGHFV 711 >gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 912 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/723 (45%), Positives = 476/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I +D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G LIR V +IR RA GV + + + E +VS+ER+ E E + TE Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904 Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + ++ FS+LG + + W Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632 LP G P RG + + L +I + Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690 ++ F E+ + L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L T Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840 Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ V + + D Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899 Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + + KV ++ R A + +++L++GE + ++ E+E+ Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896 >gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] Length = 885 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/877 (41%), Positives = 536/877 (61%), Gaps = 51/877 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + Sbjct: 5 ESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGSVD DPPAA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124 Query: 133 CRLQ-KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRLQ +L D+ +TVDF N+DGS QEP+VL +R P + +NG GIAVGMATNIP Sbjct: 125 CRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++DG VA+I N +I + L++ I GPDFPTGA ILG++GI++AY GRGSI +R Sbjct: 185 PHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITMR 244 Query: 252 GVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 GV+ IE + D+E I+VTE+PYQ NKAA++EKIAELV +K+I I+D+RDESDR G Sbjct: 245 GVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRNG 304 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIELKR A V+LN LY+ T LQ+ F N++AL +P+ TL L+ F+ FR E Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRVE 364 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 + RRT+Y L KA +R H+L GL IA+ NLDE++++IR + + A++EL++ Sbjct: 365 TITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG----- 419 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSEVQ+ AIL+++L RLT L I+ E L ++I + Sbjct: 420 ---------------------LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADL 458 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R R+L II+ E + +K+ TPRRT + EG LD D D I E ++ ++ Sbjct: 459 QDILAKRERILEIIETEAIEIKERHATPRRTVIELAEGELD--DTDLIANEKAIILLTEQ 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + AQ R +G+SG M+++D V H S+LFFS G VY ++ Sbjct: 517 GYIKRMPVNSFEAQSRATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQ 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +PIGS ARG ++ +L + + E++T+I+ E ++ Y+V TK G +++ LS F Sbjct: 577 IPIGSRVARGVPIVQMLPIPRDEKVTSIVAVSE---FTDDKYLVMLTKGGYIKKTSLSAF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 I +G IA+ L D + V ++ +++ + G + F ++ GRN+ GV Sbjct: 634 ANIRSNGLIAISLGEGDSLRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPLGRNTRGV 693 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + + L KGD++ISM I+ + + I + L E ++ + N Sbjct: 694 KSMKLIKGDELISMDILPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNN 753 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I ++L ++ G+GKR F + NR GKG AT + + VA Sbjct: 754 IG-----------SWVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAA 802 Query: 845 FP-VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 VN+++++++++ KG +IR ++ I I SR+ GV Sbjct: 803 LRVVNESEELMIITAKGIIIRQAIDAISIQSRSATGV 839 >gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064] Length = 807 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/856 (42%), Positives = 524/856 (61%), Gaps = 86/856 (10%) Query: 43 PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102 PD+RDGLKPVHRRIL+ M +G+ +K Y K ARI GEV+GKYHPHG+ A+Y + RMAQ Sbjct: 1 PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60 Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162 D+S R +L++G GNFGSVDGD AA RYTE R+ K + LL D+ KDT+D+ NYDGS + Sbjct: 61 DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120 Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222 EPV+L AR+PN+LVNG GIAVGMATNIPTH+LGEV+DG +A+ +PDI + LME I G Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180 Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282 PDFPT +I+GR+GI+ AY +GRGSI +RG IE+ +E IV+TEIPYQVNKA ++E Sbjct: 181 PDFPTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVE 240 Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342 +IAEL REK+I I L DESDR G R+VIE++R SA VI+N L++ T+LQ+ F +NM+ Sbjct: 241 RIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINML 300 Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402 AL P+ L IL ++ ++ V+ RRT++ L KA RAH+L GL IA+ N+D +++ Sbjct: 301 ALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIK 360 Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462 +IR S + A+ LM + +N LS+ Q +AIL++RL Sbjct: 361 LIRGSKTSDVAKEGLMTQ-FN-------------------------LSDKQAQAILDMRL 394 Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 RLTGL R+ I E +L I + IL+ R+L II++EL +K + RRT I+ Sbjct: 395 QRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILA 454 Query: 523 G-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581 G L+ +EDED I E++ +T++ GY+KR+PLS YR+QRRGG+G G+ ++DFV L Sbjct: 455 GDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLV 514 Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 STH ++LFF++ G VY+ K + +P A+G +IN+L + E++ ++ E Sbjct: 515 ATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSE--- 571 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 ++ Y+ F TKHG V+R LS F +I +SG A++L DE++SV+ ++++ TK Sbjct: 572 FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATK 631 Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 GQ + FP IRV GR + GVRGI L + D+VI M + Sbjct: 632 HGQSIYFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEV--------------------- 669 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 L++D V L V+EKG+GK+T + + + N Sbjct: 670 -------------LEDDEKV-------------------LVVTEKGYGKQTPASQYPLRN 697 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R G G++ +++ N G LVA+ V + ++L++ G LIR ++ + R+ GV Sbjct: 698 RGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVK 755 Query: 882 IFSTAKDERVVSVERI 897 + +DE+V +V ++ Sbjct: 756 LIRLDEDEKVATVAKV 771 >gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 836 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 9 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 69 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +DS Sbjct: 699 EGDFVVG-----------------------------------TSRIDDS----------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901 + +++++D G +IR V I RA +GV + + ++V+ E E Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823 Query: 902 IVDEAESTE 910 + DEA ST+ Sbjct: 824 VTDEALSTD 832 >gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640] gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica] gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06] Length = 912 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIR +H E +G+RE IV+ EIPYQVNKA ++EKI ELVREK + I++ Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++R+I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 R++I +L +I + +DILS R+ II+ EL +K R + I D+ Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSG 853 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 G LIR V +IR RA GV + + + E +VS+ER+ E E + TE Sbjct: 854 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEEETETDMPETE 904 Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 40/240 (16%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D + ++ FS+LG + + W Sbjct: 664 GIVKKVRLSAFKNVR--AQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRFNEYW 721 Query: 605 R----------------------------LPIGS----PQARGKALINILSLNQGERITT 632 LP G P RG + + L +I + Sbjct: 722 EKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGMRGMRLPADGKIVS 781 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC 690 ++ F E+ + L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L T Sbjct: 782 LITFAP-EAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATL 840 Query: 691 TQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ V + + D Sbjct: 841 VGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEEETETD 899 Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 6/105 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 796 VLTATANGYGKRTPIADYSRKNKGGQGNIAINTGERNGDLVAATLVGETD-DLMLITSGG 854 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641 + + KV ++ R A + +++L++GE + ++ E+E+ Sbjct: 855 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEEET 896 >gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467] Length = 833 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/886 (41%), Positives = 543/886 (61%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 + I+++R SA V+LN LY+ T+LQ+ F NM+A+ P+ +L IL+ +V ++EV+ Sbjct: 303 ISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + NKA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL RD I NE L I + D Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK EL V+ + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ S +RAQRRGG+G G+ + D+DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E+I I+ + Y+ F T G V+R ++ F I Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGK--YLFFTTLKGTVKRTAVTAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V T +++ T G V F + +R GR + GVRGI Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ AI+ DE Sbjct: 694 LRENDYVVGAAIL-------DEN------------------------------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 KE ++T E G+GKRT + ++ + R GKGI+ ++++ N G L + VN Sbjct: 710 -------KEVLVIT--ENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I+L+++KG +IR V+ + RAT GV + +VV++ Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTM 804 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 9/102 (8%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR ++ +FR R G+G++ V + + LV+ + +D ++ ++ Sbjct: 507 VITLTNNGYIKRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVS---CSTHDTLLFFTNT 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIF------STAKDERVVSVE 895 G + R EI R KG+ + S K + ++SVE Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVE 605 >gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] Length = 841 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/881 (40%), Positives = 521/881 (59%), Gaps = 91/881 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 + SITD MQ +Y+ Y+++VI+ RA+PD RDG KPV RRIL+ M++ G+ N+ + KCA + Sbjct: 18 ATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAMLREGLLHNRPFDKCAGV 77 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEV+ YHPHG++++YD L R+AQDW +R LI QGNFGS+DGD PAA RYTEC+LQ Sbjct: 78 VGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSIDGDSPAAYRYTECKLQA 137 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L D+ +DTVDF PNY S EP VL A PN+L+NG GIAVGM TNIP HNL E Sbjct: 138 IAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTGIAVGMTTNIPPHNLNE 197 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 ++D A+IDNP I+LD L++ I GPDFP G I G++GI++ TGRG + RGV+ + Sbjct: 198 IIDAACAIIDNPKIELDELIQFIPGPDFPGGGFIHGKSGIESYLKTGRGIVRTRGVAEVV 257 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + G +E+I+++ IPY VN+A+++ +IAEL++EK I I+DLRDES + R+VIELKRG Sbjct: 258 ENKG-KEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLRDESTEE-TRIVIELKRG 315 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A VI+NQLY+ T+L+S F V ++AL+ +P++ + +L ++ R EV+ RRT + L Sbjct: 316 AIPRVIINQLYKSTALESSFGVILLALDNRRPKQMNIKEMLTCYIDHRREVIYRRTAFRL 375 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L G IA+ N+D+ V+IIR S N E A+ LM + Sbjct: 376 RKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMAK----------------- 418 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 L+E+QT AILELRL +LTGL RD I E L I E DIL + SRL Sbjct: 419 ---------YPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRL 469 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 L +IK+EL +K++ PRR++++ D+ ED + E ++TV+H G++KR L YR Sbjct: 470 LEVIKEELGEMKEKYGNPRRSQVIAVDGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +Q+RGGKG G ++DFV LF STH V+ F + G VY EKV+ +P GS A+G+A Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEGSRTAKGRA 589 Query: 618 LINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + N+ L +GE+I ++ + DES+ + +V AT++G ++ KLSDF + G I + Sbjct: 590 MANVFELQEGEKIAAMICVKDFDESAQS---IVLATENGVTKKTKLSDFRNHRKGGIIGI 646 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 +D D ++ + E+DI+L T Q +RFP + +R GRN+ GVRGI L Sbjct: 647 NIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLR-DQGRNTRGVRGIKLKS----- 700 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 +ND V I ++ + Sbjct: 701 ---------------------------------------ENDKVVAIEIVDDEAK----- 716 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L G GKRT ++R +R G GI A K+ GAL V D D+I++ Sbjct: 717 ---LLIAGANGLGKRTEFSEYRQQSRGGSGIIAIKSDKV--AGAL----SVTDADEIMMF 767 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + KG +R P++ +R+ RA GV + + + ++ + ++ Sbjct: 768 TLKGQAVRSPIDTVRVTGRAASGVKLVNLGNKDELIGISKV 808 >gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] Length = 859 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/897 (40%), Positives = 546/897 (60%), Gaps = 86/897 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I + ++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ+WS R L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ ++ NPD LME I GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE +E+I+V E+PY VNKA ++E+IA+L R+KRI I DL DESDR G R Sbjct: 243 VRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+++R SA V+LN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ +E V+ Sbjct: 303 VVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEIVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y KA RAH+L GL IA+ ++DE++RIIR S + A+ L++ Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE Q++AIL++R+ RLTGL RD I E L I + D Sbjct: 413 ----------------TYGLSEKQSQAILDMRMVRLTGLERDKIEAEYTELMALIADMAD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL++ R+ II+ ELL V++ RRT ++ G +L +EDED I ED+V+T++ GY+ Sbjct: 457 ILANPERVHTIIETELLEVQERFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S +++QRRGG+G G+ + D+DF+ L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPSSEFKSQRRGGRGVQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ GE + ++ + + LY+ F T+ G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGVDSGETVQAVINVRGE--AEEGLYLFFTTRLGTVKRTDVKAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE++SV + +I++ T +G V F +R GR + GVRGI Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI + L++ D+E Sbjct: 694 LRENDYVIGVD------------------------LLTEDSE------------------ 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L ++EKG+GKRT + ++ I R GKGI+ +++ N G L + V Sbjct: 712 -----------VLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++ I+L+++ G +IR V+ + RAT GV + A+D +V ++ ++ ++E++ E Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVKVSTMAKV-DAEVIKE 814 >gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] Length = 836 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/903 (40%), Positives = 552/903 (61%), Gaps = 86/903 (9%) Query: 10 EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+E G IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 EQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ K A ++ D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMAT Sbjct: 123 RYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIPTHNLGEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GSI Sbjct: 183 NIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++R IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G Sbjct: 243 IVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EEV Sbjct: 303 RIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM Sbjct: 363 VRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DD S LS+ Q +AIL+LRL RLTGL R+ I +E L I + Sbjct: 413 ------DDYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ + R+ II EL+ ++++ RRT + G + ++EDED I ED++VT++H GY Sbjct: 457 DILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+P+ ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + +P Sbjct: 517 VKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN+L ++ E++T ++ + E + F T+ G V+R +++F Sbjct: 577 EYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTPVTEFKN 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG Sbjct: 636 IRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGA 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L GD +I A L D V Sbjct: 695 RLRDGDYLIGAA----------------------------------PLNEDDQV------ 714 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + V Sbjct: 715 -------------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTV 759 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906 ++ +++V+DKG +IR V + R+ GV + D V ++ ++ +E+ D Sbjct: 760 QGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPT 819 Query: 907 EST 909 E++ Sbjct: 820 EAS 822 >gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] Length = 859 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/887 (40%), Positives = 533/887 (60%), Gaps = 86/887 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K ARI G+ Sbjct: 14 ISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPYKKSARIVGD 73 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ K AH Sbjct: 74 VMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARMSKIAH 133 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++ D+ KDTVDF PNYDG +EP VL AR+PN+LVNG GIAVGM TNIPTHNL EV+ Sbjct: 134 EMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIPTHNLSEVIG 193 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 ++ N D + LME + GPDFPTG +++G++GI+ AY TG+G+I++R IE S Sbjct: 194 AIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTIIVRAKLDIETLS 253 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 +E+I+V EIPY VNKA ++E+IAEL R+KR+ I +RDES R+G RVVIE ++ ASA Sbjct: 254 SGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRVVIECRKDASA 313 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 VI+N LY+YT LQ+ F +NMVA+ P +L IL+ ++ +EEV+ RR+ + NKA Sbjct: 314 SVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVIRRRSIFEKNKA 373 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 RAH+L GL IA+ ++DE+V I+R S + + A+ ++ D K Sbjct: 374 EARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIE------DYK------------ 415 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LS+ Q++AIL++RL RLTGL R+ I E L +I +L S + I Sbjct: 416 --------LSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQVLGSETMRYQI 467 Query: 501 IKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 I EL+ ++ + RRT ++ G + +++DED I +++VT++ GY+KR+ +RAQ Sbjct: 468 IYDELIEIESKFGDDRRTELMVGEIHNIDDEDLIEESNVIVTLTQNGYIKRIDDVEFRAQ 527 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RGG G G+ M D+DFV + STH SVLFF++ G V+ K + +P A+G ++ Sbjct: 528 NRGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPEFGRAAKGIPVV 587 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 N+L+L Q E + ++ E + +++F TK+G V+R SD+ I +G IA+KL Sbjct: 588 NLLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLA 647 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 DE++ V + +++I++ ++ G V F + +R GR + GVRGI L GDQV+ M+ Sbjct: 648 EGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSM-GRTATGVRGIRLNDGDQVVGMS 706 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 + L D +V Sbjct: 707 V----------------------------------LGPDDNV-----------------L 715 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T G S Y + NR GKG++ +V++ N G LV + V+ + I+L++++ Sbjct: 716 VVTEKGYGKQTPASEYGIK--NRGGKGVKTINVTEKN--GILVGLTTVSGEEDIMLMTNQ 771 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 G IR I RAT+GV + A+D V ++ ++ E ++EA Sbjct: 772 GIAIRFHAKNISQTGRATQGVRLIRLAEDSYVSAIAKV---EAIEEA 815 >gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57] Length = 828 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/882 (41%), Positives = 543/882 (61%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + G ++FP+ +R GR + GV G Sbjct: 635 RSYSGIRAIVLDKGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D + Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] Length = 916 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIRG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470] gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470] Length = 826 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/880 (41%), Positives = 543/880 (61%), Gaps = 93/880 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+VR+I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + R T I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y+ KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKKGVVKRTNLSEF-DSN 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ LD DE++S + + +L+ + LG ++F + +R GR + GVRGI Sbjct: 635 YNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREI-GRTTRGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+V+ D++ Sbjct: 694 LNENDFVVG-AVVISDDSNK---------------------------------------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V V+ Sbjct: 713 -----------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVISVD 759 Query: 849 D-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 DENLDLMILTASAKMIRVSIQDIKETIGRNTSGVKLIDTA 799 Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 18/128 (14%) Query: 781 VEGNISEERCQELK------------LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 V+ S +RC E++ E ++++S KG+ KR + NR GKG Sbjct: 477 VKEQFSSQRCTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKL 536 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885 + + + + I F N +D ++ +++KG L R+ V +I ASR G V + S Sbjct: 537 SGNTYEDDFIENF---FVANTHDILLFITNKGQLYRLKVYKIPEASRIAMGKAIVNLISL 593 Query: 886 AKDERVVS 893 A DE++++ Sbjct: 594 APDEKIMA 601 >gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273] gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273] Length = 815 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/879 (41%), Positives = 527/879 (59%), Gaps = 87/879 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ K + K AR+ GEV+GK Sbjct: 1 MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+ A+YD+L R+ QD+SLR LI+GQGNFGS+DGD PAA RYTE R+++ A +L Sbjct: 61 FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 DL K+TVDF N+D S +EP VL + PN+LVNG GIAVGMATNIP NL EVVDG +A Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-R 263 +I NP++++ LM+ + PDFPT +I G G++ AY TGRG +VIR + IE T + R Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGIIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNGR 240 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 E IVVTE+PYQVNK ++EKI ELV +K+I IAD+RDESDR G R+VIELKR A A V+ Sbjct: 241 ESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVV 300 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY++T +Q F V M+AL P L +++ ++ R E+V+RRT++ L A R Sbjct: 301 LNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERR 360 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L GL I + NLDEV+ IR SP+ TA+ LM+R Sbjct: 361 AHILEGLKICLDNLDEVITTIRESPDANTAQDRLMER----------------------- 397 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 LSE+Q +AILE+RL RLTG+ R I E I E IL S R + II+ Sbjct: 398 ---FALSEIQAKAILEMRLQRLTGMERQKIDAEYKETLATIDELRLILQSPERQMEIIRT 454 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 ELL VK+ RRT IV D ED I +ED+V+TV+H G++KR P+S YR Q RGG Sbjct: 455 ELLKVKEVYGDERRTEIVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG +G + +DF+ +F+ STH +LFF++ G Y KV+ +P ARG+AL NI+ Sbjct: 515 KGVTGAQAKHDDFIEHMFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIME 574 Query: 624 LNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L+ E+I + DE Y++ AT G V++ L +F + R+G A+ +D D Sbjct: 575 LHPDEKIKAYINIRNFDEPG----YIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGD 630 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 +L ++ ++L G VRFP +R GR ++GV+GI+L +G++ I+M Sbjct: 631 ALLDARLTDGDHQVILAKSSGLVVRFPEVQVRPM-GRTAMGVKGITLDRGEKCIAM---- 685 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 +T+ + D++ +L Sbjct: 686 -----------------------------VTTKRTDTA-------------------LLA 697 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V++ GFGKR+ D+R++ R +G+ + +IG+LV + VND+D +IL++ G + Sbjct: 698 VTDNGFGKRSRVEDYRLTKRGARGV--ITLKAHEKIGSLVGLLDVNDDDDLILITTHGIV 755 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 R V++IRI R T GV + + + ++ R+ +S+ Sbjct: 756 NRQHVSDIRITGRNTSGVKLIRLMAGDTISALARVPKSD 794 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 G VK+ L + RR G + + + + D + D + V+ S G V + + Sbjct: 603 GIVKKTALEEFSRPRRNGI--AAITIDEGDALLDARLTDGDHQVILAKSSGLVVRFPEVQ 660 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + P R + ++L++GE+ ++ + + ++ T +G +R+++ D+ Sbjct: 661 V---RPMGRTAMGVKGITLDRGEKCIAMV-----TTKRTDTALLAVTDNGFGKRSRVEDY 712 Query: 666 IQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 R + + L + ++I S+ ++D++L T G R +S IR+ GRN+ Sbjct: 713 RLTKRGARGVITLKAHEKIGSLVGLLDVNDDDDLILITTHGIVNRQHVSDIRI-TGRNTS 771 Query: 723 GVRGISLAKGDQVISMAIVLHADADYD 749 GV+ I L GD + ++A V +D + D Sbjct: 772 GVKLIRLMAGDTISALARVPKSDEETD 798 >gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] Length = 866 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV +K + K A Sbjct: 15 IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSVDGDP AA RYTE RL Sbjct: 75 RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG GIAVGMATNIPTHNL Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +RDESD+ G R+ I++ Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A++ + E++ RRT++ Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R I E L I++ DIL+ Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPE 468 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II QELL + ++ RRT + G + +EDED I E+++++++H GY+KR+ S Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGG+G G+ D+DFV L STH ++LFFS G VYK K + +P QA+ Sbjct: 529 EFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L L+ GER+ ++ D ++ + + F TK G V+R +S+F I +SG Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-SLFFTTKLGTVKRTAVSEFTNIRQSGLR 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D ++SV + +I++ + G V F S +R GR + GVRG++L D Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + LI GD Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++EKG+GK+T+ ++ I R GKG + +++S N G L + V+ ++ I+ Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +D G +IR ++ I RAT GV + + +V ++ ++ + E Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818 >gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16] Length = 828 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++V+LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL RD I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + LG ++FP+ +R GR + GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ A+V+ D + Sbjct: 694 IRLNENDFVVG-AVVISDDGNK-------------------------------------- 714 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV++ Sbjct: 715 -------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSIIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] Length = 916 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +VIRG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 829 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 2 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 62 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 411 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 632 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +D+ Sbjct: 692 EGDFVVG-----------------------------------TSRIDDN----------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 706 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901 + +++++D G +IR V I RA +GV + + ++V+ E E Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 816 Query: 902 IVDEAESTE 910 + DEA ST+ Sbjct: 817 VTDEALSTD 825 >gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO] gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162] gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162] Length = 823 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] Length = 836 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/909 (40%), Positives = 549/909 (60%), Gaps = 95/909 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++ +EM+ S+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G +K + Sbjct: 9 QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 68 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD AA RYT Sbjct: 69 KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 128 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF N+DG+ +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 129 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 188 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D +++NP+ + LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R Sbjct: 189 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIE+ +G +E+IVVTE+PY VNKA ++E I L EKRI + +RDES+R+G RVV Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R SA VILN L++ TSLQ+ F NM+A+ P+ +L IL ++ + EVV R Sbjct: 309 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 368 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + +A RAH+L GL IA+ N+D ++ IIR S A++ +M Sbjct: 369 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDE----------- 417 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I E L I + DIL Sbjct: 418 ---------------FLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 462 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ II++EL VK + RRT ++ G +L +EDED I ED+++T+S+ GY+KR Sbjct: 463 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGG+G G+ M D+DFV L STH +LFF++LG VY+ K + +P Sbjct: 523 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++N+L L+ GE+I TI+ D+++ Y+ F T++G V+R S F I Sbjct: 583 RTAKGLPIVNLLKLDDGEKIATIINVDRDQAAK---YLFFTTRNGIVKRTSTSQFSNIRT 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G A+KL DE+++V + E+++++ T LG VRF + +R GR + GV+G++L Sbjct: 640 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V+ TS +D+ Sbjct: 699 EGDFVVG-----------------------------------TSRIDDN----------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q +L +SE G GKRT + ++ R GKG++ +V++ G L + VN + Sbjct: 713 -------QEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTE--RTGKLAGLTAVNGD 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---------ERIRESE 901 + +++++D G +IR V I RA +GV + + ++V+ E E Sbjct: 764 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 823 Query: 902 IVDEAESTE 910 + DEA ST+ Sbjct: 824 VTDEALSTD 832 >gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7c] Length = 832 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/897 (40%), Positives = 536/897 (59%), Gaps = 88/897 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 + E I ++E E GI + ++ M++S+L Y+++VI+ RA+PD+RDGLKPV+RRIL+ M Sbjct: 9 IVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYAM 68 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 + G VK A+I GEVMG YHPHG+++IYDA+ +AQ W +R L+EGQGNFGS+ Sbjct: 69 NKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGSM 128 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD PAA RYTE R+ K LL D+ K+TVDFR N+DG+ +EPVVL + PN+L+NG Sbjct: 129 DGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQM 188 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGEV+D VA IDNP+I LD L+ I+GPDFPTGA + G ++ A Sbjct: 189 GIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGGAPMRQA 248 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRGS+ IR V+ IE+ R I+VTE+PY ++K ++K+ ELV K+I IAD R Sbjct: 249 YETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIADAR 308 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359 DES R RVV+ELK+ A ILNQLY+ T LQ+ F N++AL NG +P+ L IL Sbjct: 309 DESARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEILA 368 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F+ R+ V+ RRT++ L KA++RAH+L GL IA+ ++DEV++ IR S + A + LM+ Sbjct: 369 EFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYD--DADKRLME 426 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LSE+Q AIL ++L RL GL RD I +EL Sbjct: 427 R--------------------------FGLSEIQAAAILAMQLRRLQGLERDKIEDELKQ 460 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDM 538 L IK+ IL+S +L ++K ELL++KD+ RR++I+ L DE+ I E+ Sbjct: 461 LHELIKKLEAILASEQEILNVVKTELLAMKDKYGDERRSKIINHELGKFSDEELIPEEES 520 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V+ ++ Y+KR +S YR Q RGGKG+ G+ ++ED + + STH +LFF+++G + Sbjct: 521 VILLTSENYIKRTLVSDYRRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRI 580 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 ++ K + +P S A+G A +N+L L E+IT I+ ++++ + Y+ AT+ G V+ Sbjct: 581 FRLKAYEVPAASLSAKGVAAVNLLQLQPEEKITAII--KHEKNANDKGYLFMATQKGTVK 638 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + + D+ + +G IA+KLD DE+ ++ + +ND++++T GQ +RF R G Sbjct: 639 KTPVKDYANVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPM-G 697 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R++ GVRG+ L D V+ M IV +GD Sbjct: 698 RSARGVRGVRLRPNDSVVGMDIV------------------------TGD---------- 723 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +Q +L VSEKGFGKRT +F R G GI+A V+ + Sbjct: 724 ------------------DQTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTA--KT 763 Query: 839 GALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G +++V ++ + +LVS G IR+ +++I++ R T+GV I + + V S+ Sbjct: 764 GPIISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSI 820 Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 7/107 (6%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQE-NDILLTTKLG 703 ++ ++ G +R K+S+F R G K A+ I+SV+T E + LL ++ G Sbjct: 727 LLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTAKTGPIISVQTIDPEVTEALLVSQNG 786 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 Q +R +S I++ GR + GV + L+ GD V S+ L AD DE Sbjct: 787 QTIRLSLSDIKLL-GRTTQGVTIMRLSDGDAVSSIG--LMADRPQDE 830 >gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301] gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301] gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] Length = 856 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/897 (41%), Positives = 533/897 (59%), Gaps = 75/897 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 7 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R LI+G GNFGS+D DPPAA RYTE RL Sbjct: 67 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTESRL 126 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 127 KPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIPPHN 186 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E++ G +A+I NP+I LM I GPDFPTG +LG GI++AY TG+GSI +RGV+ Sbjct: 187 PTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMRGVA 246 Query: 255 HIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 I+ R+ I++TE+PYQ NKAA++E+IAE+V EKR+ I+D+RDESDR G R+ Sbjct: 247 TIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDGMRI 306 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN LY+ T LQS FS NM+AL +P TL L+ F+ FR E + Sbjct: 307 VIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIETIE 366 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L GL IA+ NLD ++ +IR S + A++E L Sbjct: 367 RRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQE-------------L 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ID+ LSEVQ+ AIL+++L RLT L + I E L I++ DI Sbjct: 414 IDVYG-------------LSEVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDI 460 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R R+L II+ EL ++ PRRT ++E ++E D I E ++ ++ GY+KR Sbjct: 461 LARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGYIKR 520 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P++ + AQ RG +G++G +D+D V H ++LFFS G VY +R+P S Sbjct: 521 MPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAAS 580 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ARG ++ +L + + ERIT+I+P F +DE Y+V T+ G +++ LS F Sbjct: 581 RNARGVPIVQLLPIPREERITSIVPVSAFSDDE------YLVMLTQGGYIKKTALSAFAN 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVR 725 I +G IA+ L D++ V E+ IL+ ++ G + F S +R GR + GVR Sbjct: 635 IRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPL-GRATRGVR 693 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL GD +ISM ++ +M+ +GD +E D +VE Sbjct: 694 AMSLRSGDTLISMDVL---------PASLTANMTE-----TGDEDEA-----DDAVEVVA 734 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAV 844 S ++L V+ +G GKR + FR+ R+G G+RA SK +E LV++ Sbjct: 735 S---------PGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKFRSKQDE---LVSL 782 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D+++++S + +IR + I SRA GV + D+ + +V + E Sbjct: 783 RIVESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGE 839 >gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636] gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636] Length = 823 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/905 (40%), Positives = 552/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + ++ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTIS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18] gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140] gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1] gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] Length = 916 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] Length = 831 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/896 (40%), Positives = 548/896 (61%), Gaps = 85/896 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K Y K A Sbjct: 5 ITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD AA RYTE ++ Sbjct: 65 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG GIAVGMATNIPTHNL Sbjct: 125 SKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+ +++NPD+ + LM+ + GPDFPTG V++G+ GI+ AY +G+GSI++R Sbjct: 185 GEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSIIVRAKVE 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +++IVV EIPY VNKA ++E+IA L REK I I D+ DE+DR+G R+VI+++ Sbjct: 245 IEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA+VILN LY+ T +Q+ ++ NM+A+ P+ +L IL+ ++ +EEVV RRT++ Sbjct: 305 RDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEVVRRRTEF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH++ GL IA+ ++D ++ IIR S E A++ LM D Sbjct: 365 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM----------------D 408 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 D S LS+ Q +AIL+LRL RLTGL R+ I +E L I + DIL+ + Sbjct: 409 DYS----------LSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQE 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II EL+ ++++ RRT + G + ++EDED I ED++VT++H GYVKR+P+ Sbjct: 459 RINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPVD 518 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + +DF+ L STH +LFF++ G V+ K + +P A+ Sbjct: 519 EFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAAQ 578 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L ++ E++T ++ + E + F T+ G V+R +++F I +G Sbjct: 579 GIPIINLLDVDGKEKVTAVINVAQREDDLQK-DLFFVTRQGTVKRTLVTEFKNIRSNGIK 637 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+++V + +++L T LG F +SA+R GR++ GVRG L GD Sbjct: 638 AINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGARLRDGDY 696 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +I A L D V Sbjct: 697 LIGAA----------------------------------PLNEDDQV------------- 709 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L +SEKG+GK+T + ++ I R G GI+ +V++ N G L + V ++ ++ Sbjct: 710 ------LVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTVQGDEDLM 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909 +V+DKG +IR V + R+ GV + D V ++ ++ +E+ D E++ Sbjct: 762 VVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEAS 817 >gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68] gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68] Length = 823 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] Length = 823 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] Length = 823 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] Length = 866 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM ++GV +K + K A Sbjct: 15 IKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVTPDKPHKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG++AIY++L RMAQ +S R L++G GNFGSVDGDP AA RYTE RL Sbjct: 75 RIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAAAMRYTEARL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K TVDF+P+YDG +EPVVL +R+PN+LVNG GIAVGMATNIPTHNL Sbjct: 135 SKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGMATNIPTHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ ++ NPD + LME + GPDFPTGA+++G++GI+ AY TGRGS+ +R Sbjct: 195 REVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRAYETGRGSVTVRSKVD 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +S E+I V+E+PY VNKA ++E+I ELV EK++ I +RDESD+ G R+ I++ Sbjct: 255 IETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQNGLRIAIDVG 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN LY+ T LQ+ FS NM+A+N KPE +L IL A++ + E++ RRT++ Sbjct: 315 RDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVAYLEHQREIIRRRTEF 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IA+ ++D ++ +IR S E A+ EL+ R Sbjct: 375 DLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQ------------- 421 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q +AIL++RL RLTGL R I E L I++ DIL+ Sbjct: 422 -------------LSDKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDILAKPE 468 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II QELL + ++ RRT + G + +EDED I E+++++++H GY+KR+ S Sbjct: 469 RIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVLISLTHKGYIKRLSTS 528 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGG+G G+ D+DFV L STH ++LFFS G VYK K + +P QA+ Sbjct: 529 EFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAK 588 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN+L L+ GER+ ++ D ++ + ++ F TK G V+R +S+F I + G Sbjct: 589 GIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKRTAVSEFTNIRQLGLR 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D ++SV + +I++ + G V F S +R GR + GVRG++L D Sbjct: 648 AINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GRTASGVRGMNLRDKDY 706 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + LI GD Sbjct: 707 VVGADL-----------------------LIPGDN------------------------- 718 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++EKG+GK+T+ ++ I R GKG + +++S N G L + V+ ++ I+ Sbjct: 719 -----VLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--GPLAGLAVVSGDEDIM 771 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + +D G +IR ++ I RAT GV + + +V ++ ++ + E Sbjct: 772 ITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEKEE 818 >gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii] Length = 824 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/883 (40%), Positives = 529/883 (59%), Gaps = 91/883 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM + + N + K A Sbjct: 12 IKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENNMYANTAHKKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IYDA+ RMAQ +S R L++G GNFGSVDGD AA RYTE RL Sbjct: 72 RIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAAMRYTEARL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+TV+F NYDGS +EP VL +RYPN+LVNG GIAVGMATNIP HNL Sbjct: 132 SKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D A +DNPDI + LM+ ++GPDFPTG ILG TG++ AY TG+G I +R Sbjct: 192 GEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQAYETGKGIIAVRAQHE 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I +T +R ++++TEIPYQVNK ++E+IAE+V+ K I I+DLRDES+R+G R+VIEL+ Sbjct: 252 IVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDESNRKGMRIVIELR 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + V LN LY++T LQ+ F +NM+AL +P +L L ++A + E++ RRT++ Sbjct: 311 KDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTHYIAHQIEIITRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H+L L A+ ++D V++II+ + +PE AR L+ Sbjct: 371 DLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLI----------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T +E+Q R+I ++L RLTGL D I E ++L +I E IL Sbjct: 414 ---------ATYDFTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDED 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + IIK EL +KD+ D PR + + + LD+++ED I ED VVTV++ Y+KR+ L Sbjct: 465 LKIEIIKSELQDIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDTVVTVTNNPYIKRMNLD 524 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G SGV + D+DFV + + STH LFF++LG V+K K + LP GS Q++ Sbjct: 525 EYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSK 584 Query: 615 GKALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G ++N L+ GE++ TTI F ++ Y+ F TK G V+R ++++ I ++ Sbjct: 585 GVPIVNYLNFQPGEKLASFTTIKDFDAEDH-----YLNFVTKRGIVKRTHINNYKNIRQN 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE+L ++ ILL G+ + F + IR GR + GVRG+ + Sbjct: 640 GIIAISLREDDELLLTKSTNGHKHILLGASNGKAIHFLETDIRQI-GRTATGVRGMDIPD 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 ++++ A+V +E +I Sbjct: 699 DEEIVGFAVV-------------------------------------DGIEDDI------ 715 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L ++E +GK TS ++R+ N GKG++ +V+ N G L + V +++ Sbjct: 716 ---------LVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKN--GKLKTLRKVTNDE 764 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 II+VS +G IR+P+++I RAT+GV I + D++V ++ Sbjct: 765 DIIVVSHRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTI 807 >gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] Length = 916 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/723 (45%), Positives = 475/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] Length = 835 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/874 (40%), Positives = 533/874 (60%), Gaps = 84/874 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Y K ARI G+VMGK Sbjct: 5 MRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGDVMGK 64 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIY+++ RMAQD+S R LL++G GNFGSVDGD AA RYTE R+ K A +L Sbjct: 65 YHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIALEMLR 124 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD + +EPVVL +R+PN+LVNG GIAVGM TNIP HNL EV+ G Sbjct: 125 DINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVISGLHL 184 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NPD LME I GPDFPTGA+++G++GI+ AY TG G++ +R IE+ S + Sbjct: 185 LMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAKVDIEEQSNGKS 244 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+V EIPY VNKA ++ +IA+L REK+I I D+ DESDR+G R+ I+++R S V+L Sbjct: 245 RIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSPSVVL 304 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T +QS F+ NM+A+ P+ L IL+ ++ +E+V+ RRT + L KA+ RA Sbjct: 305 NNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKAQARA 364 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++D ++ IIR S + E A+ LM Sbjct: 365 HILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYE---------------------- 402 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS+ Q +AIL++RL RLTGL R+ + E I + DIL+ R+ II QE Sbjct: 403 ----LSDKQAQAILDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSIIYQE 458 Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 LL ++++ RRT ++ G +L +EDED I E++V+ ++H GY+KR+P S ++ QRRGG Sbjct: 459 LLEIQEKFGDDRRTELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGG 518 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ + D+DF+ L STH VLFF+++G VY+ K + +P A+G +IN+L Sbjct: 519 RGVQGMGVHDDDFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLD 578 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L++GE+I T++ + E ++ ++ F T G V+R +++F I ++G A+ L DE Sbjct: 579 LSEGEKIQTVINV-DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLREGDE 637 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +L+V +I++ T G V F +A+R GR + GVRGI L D + + Sbjct: 638 LLNVSITDGNQNIIIGTHGGYAVSFSENAVRQM-GRTASGVRGIRLRDDDYAVGSDV--- 693 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 LK DS+V + Sbjct: 694 -------------------------------LKPDSNV-------------------FVI 703 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SEKG+GK+T + D+ I R GKGI+ +++++ N G+L + V+ + I++++DKG +I Sbjct: 704 SEKGYGKQTPASDYPIKGRGGKGIKTSNITEKN--GSLAGLTIVDGTEDIMVITDKGVMI 761 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 R V + R+T GV + + D +V ++ ++ Sbjct: 762 RFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKV 795 >gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] Length = 823 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 550/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY ++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A] gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A] Length = 854 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/885 (40%), Positives = 549/885 (62%), Gaps = 60/885 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ K + KCA Sbjct: 8 IIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPFRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R L++G GNFGS+D DPPAA RYTECRL Sbjct: 68 RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYTECRL 127 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + LL D+ +TVDF N+DGS +EPVVL +R P +L+NG GIAVGMATNIP HN Sbjct: 128 RNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNIPPHN 187 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I NP+++ L++II GPDFPTG ILGR+GI AY TGRGSI +RGV+ Sbjct: 188 LGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITMRGVA 247 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE + +R+ I++T++PYQ NK+A++E+IA++V +KRI I+D+RDESDR+G R+ Sbjct: 248 QIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDREGMRI 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A + V+LN +Y+ T +Q+ F NM+AL +P+ TL L F++FR E ++ Sbjct: 308 VIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRVETII 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+KY L KA +R H+L GL IA+ +LD ++ IIR + + TA+++L+ + Sbjct: 368 RRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQ---------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+VQ AIL+++L RLT L + I E L I+I DI Sbjct: 418 ----------------FELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 LS + R+ II++EL+ +K+ TPR T I+ ++ D D I E ++ ++ GY+KR Sbjct: 462 LSKKERIEAIIEEELVQIKNIHGTPRCTEIIHDEGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + AQ+R +G++G +++ D V H VL FS G VY +++P S Sbjct: 522 MPVSSFDAQQRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSS 581 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG ++ +LS+++ E+IT+I+ E + ++++V T+ G +++ LS F I Sbjct: 582 RTSRGVPIVQMLSISKSEKITSIISVSEFKE---DIFLVMLTRQGYIKKTALSAFSNIRT 638 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L D++ V +E+ ++L T+LG + F ++ GR + GV+ + L Sbjct: 639 NGLIAISLGEGDQLRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPLGRATRGVKSMRL 698 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 K D++ISM I +SAQ ++ EE S N+ +E E Sbjct: 699 KKKDELISMDI-----------------LSAQ---VTIGVEE--SQDNEEVLEIEPEELT 736 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E L +IL ++ KG+GKR FR+ R+G G+RA + L ++ VN Sbjct: 737 EKETSLGP-WILAITNKGYGKRIPITQFRLQRRAGMGVRAIKFKSGKD--NLTSLRVVNA 793 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D++++VS++G +IR V I + SR+ GV + +D+ + +V Sbjct: 794 EDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAAV 838 >gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] Length = 815 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D E+ Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GKRT + ++ I +R G++ T+V++ N G LV V V Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2] gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2] Length = 835 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/722 (45%), Positives = 478/722 (66%), Gaps = 31/722 (4%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 ++E++ I I EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 2 AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++++Y+A+ RMAQD+S+R +L++G GNFGS+DGD AA Sbjct: 62 DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL K A +L DL K+TVDF PNYDG +EP VL +R+PN+LVNG GIAVGMA Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP HNL EV+DG A+I NP+I L++ ++GPDFPT +++G +GI+ AY TGRG+ Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGT 241 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 + +R + IE+ +G++ +I+V E+PYQVNKA ++EKIAELVREK+I I DLRDESDR G Sbjct: 242 VTMRARATIEE-NGNKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG 300 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIEL+R + V+LN LY+ T +QS F +NM+AL +P+ + +L ++ + E Sbjct: 301 MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE 360 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT+Y L KA RAH+L GL IA+ +LDEV+ +IR S + AR L++R Sbjct: 361 VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIER------- 413 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LS Q +AIL++RL RLTGL RD I E L +I E Sbjct: 414 -------------------FALSYEQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEY 454 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+ +L II EL +K+ RRT I ++ DED I RED++++++H GY Sbjct: 455 KAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEEILDEDLIPREDVIISITHTGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P++ YR+Q+RGGKG G+ ++ DFV LF+ +TH +LFF++ G VY+ K + +P Sbjct: 515 IKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIP 574 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG +IN++ + QGE I ++P ES + Y+ FAT+ G V++ L D++ Sbjct: 575 DLSRTARGTPIINLIQIEQGETINAVIPV---ESFDSESYLFFATRQGIVKKTPLDDYMN 631 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I + G IA+ + DE++ V+ +I++ T G +RF +R GR++ GV+GI Sbjct: 632 IRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSM-GRSATGVKGI 690 Query: 728 SL 729 L Sbjct: 691 QL 692 Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTHTSVLFFSS 594 E+ V+ V+ GY KR P+S YR Q RGGKG + + D++ + L +V ++ ++ Sbjct: 707 ENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTA 766 Query: 595 LGFVYKEKVWRLPIGSPQARGKALIN 620 LG + + + + +G LIN Sbjct: 767 LGTLIRTSMEGISTMGRNTQGVKLIN 792 >gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317] gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317] Length = 823 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 551/905 (60%), Gaps = 88/905 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EVV ++DNPD+ + LME++ GPDFPTG +++G++GI+ AY TG+GSI Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + +E+I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R ASA VILN LY+ TSLQ+ F NM+A+ P+ +L IL+ ++ + EV+ Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ +++R Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q++AIL++RL RLTGL R+ I NE L I++ D Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ IIK EL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + +RAQRRGG+G G+ + ++DFV +L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ E I I+ + + Y+ F T+ G V+R ++ F I Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGH--YLFFTTRQGTVKRTSVTAFANI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V +++I++ T G V F A+R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A+ +K + V Sbjct: 694 LREEDYVVGAAL----------------------------------MKENQEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT ++ + R GKGI+ ++++ N G L + V+ Sbjct: 713 ------------LVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS---VERIRESEIVDE 905 ++ I+L++DKG +IR V+ + R+T GV + D +VV+ VE + V+E Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818 Query: 906 AESTE 910 S E Sbjct: 819 QGSEE 823 >gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4] Length = 844 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/905 (39%), Positives = 533/905 (58%), Gaps = 102/905 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + + M+ SY+ YA++VI RA+PD+RDGLKPV RR+LF M+++ +K + KCA Sbjct: 9 IHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+W+ R L++G GNFGS DGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLL------------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 K + + D+ D VDF PN+D + +EP VL ARYPN+LVNG GIA Sbjct: 129 SKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLVNGTTGIA 188 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIK 238 VGMATNIP HNL E++ +IDN + ++D L+EI++GPDFPTG VILG+ GI+ Sbjct: 189 VGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVILGKAGIE 248 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGR I +R VS IE + +IVVTE+PY VNKA ++E IA+LV++K+I I D Sbjct: 249 EAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDKKIDGITD 308 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDES R+G RV IEL+R + ++ILNQLY++T LQ F V M+AL +P+ L +L Sbjct: 309 LRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQPKILNLKQML 368 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 ++ +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S + +A+ LM Sbjct: 369 VHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVNSAKATLM 428 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 +R LS+ Q +AI+++RL LTGL RD I+ E + Sbjct: 429 ER--------------------------FGLSDAQAQAIVDMRLRALTGLERDKIQKEYD 462 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 L I I + IL LLG+IK E+ + D+ RRT I D+ ED I + Sbjct: 463 DLQILIGKLKAILGDEKILLGVIKTEITEIADKYGDDRRTSIGFDEFDISMEDMIPVTNT 522 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 VVT + LGY+KR+ ++AQ RGGKG G+ D+D+VT++ ++S+H +LFF++ G V Sbjct: 523 VVTFTKLGYIKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRV 582 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + +P S +RG A++NIL L E+IT ++P E + Y+ AT G V+ Sbjct: 583 YRIKAYEIPESSRTSRGIAIVNILQLQPDEKITAMIPI---EDYHEDKYLFMATADGFVK 639 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + K++++ I ++G A+ L D ++ V+ + D+++ TK GQ +RF + +R G Sbjct: 640 KTKITEYDNIRKNGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSETEVRS-TG 698 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R ++GV G++L+ D++I M ++ ++ Sbjct: 699 RATMGVIGMNLSADDEIIGMQLISQGES-------------------------------- 726 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 ++TVSE G GK T +F +R GKG++ +++ + Sbjct: 727 ---------------------LMTVSENGLGKCTLMTEFNTIHRGGKGVKCYKITE--KT 763 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L+ V +D+++L++ GT+IR+ V + SR T GV + ++ +++S+ ++R Sbjct: 764 GNLIGAKAVEKDDEVMLINTAGTIIRIEVAGTTLLSRITSGVKLIDLKENTKLISIAKVR 823 Query: 899 ESEIV 903 +S+ + Sbjct: 824 KSDTI 828 >gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826] gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826] Length = 873 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/910 (41%), Positives = 540/910 (59%), Gaps = 132/910 (14%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SV I D ++NSYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV Y+K A Sbjct: 12 IASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLGVGSRSAYMKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YDAL RMAQ +S+R +++GQGNFGS+DGD AA RYTE R+ Sbjct: 72 RIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDSAAAMRYTEARM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 LL D+ KDTVDF PNYD EP VL +R PN+L+NG GIAVGMATNIP H+L Sbjct: 132 TMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++DG + +++N + L+ +ME I+GPDFPTG +I G+ GI AY TGRG + +R +H Sbjct: 192 DELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKLRAKTH 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK +++ IV+ E+PYQ NKA ++E+IAELV++K+I I+++RDESD+ G RVVIELK Sbjct: 252 IEKKP-NKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDESDKDGIRVVIELK 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +D++LN L++ T+++S F V M+A+N +P+ F LI +LK F+ R+ V++RRT + Sbjct: 311 RDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHRKTVIIRRTIF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR RAH+L GL IA+ N+DEV+ +IR S + AR LM + Sbjct: 371 ELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSK--------------- 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q AIL++RL++LTGL R+ + EL L EI +IL S + Sbjct: 416 -----------FNLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSET 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +IK+ELL +K++ PR T IV+ D++ ED I E+MVVT++H GY+KRVP Sbjct: 465 LLENLIKEELLEIKNKFKVPRVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV+++P GS A+G Sbjct: 525 YEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 584 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 KA++N++ L E+I I+P + DES + F TK+G V+R LS+F I G Sbjct: 585 KAVVNLIQLQPDEKIKAIIPTTDFDESKS----LAFFTKNGIVKRTNLSEFKNIRSVGVR 640 Query: 675 AMKLDSRDEI--------------------LSVE----------------TCTQEND--- 695 A+ LD DE+ LSVE + E D Sbjct: 641 AISLDENDELVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNEIDEDSANAEEDTNS 700 Query: 696 -----ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYD 749 + + TK G C++F IS +R GR + GV GI + GD+V+ A+ Sbjct: 701 GDETMLFVVTKKGMCLKFKISKVRQM-GRTARGVTGIKFKEPGDEVVGAAV--------- 750 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 +E N +Q IL++S+KG G Sbjct: 751 -------------------------------IESN------------DQEILSISQKGIG 767 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT++ ++R++NR GKG+ ++ + G LV V V++ ++ ++ G +IRV + Sbjct: 768 KRTTADEYRLTNRGGKGVICMKLT--SRTGDLVGVVMVDEEQDLMALTSSGKMIRVDMQS 825 Query: 870 IRIASRATKG 879 IR A R T G Sbjct: 826 IRKAGRNTSG 835 Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 505 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESF---FTSNTHDTLMFV 561 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + DE++ ++ Sbjct: 562 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAI 602 >gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] Length = 826 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/890 (40%), Positives = 536/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL +RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ +++ DF+ L STH ++LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ G +++ Sbjct: 691 RGINLRPHDYVVGSGVL-------------------------GSNDQV------------ 713 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L +SEKG+GKRTS+ ++ + R GKGI+ ++++ N G L V Sbjct: 714 ----------------LVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +N + I++++ G +IR ++ R+T GV + +V S+ Sbjct: 756 IVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQVASL 805 >gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463] Length = 827 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVISIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ DAD D+ Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +SE G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 713 ---------------VLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I++++ G +IR ++ R+T GV + + D +V S+ Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 33/284 (11%) Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694 EDE ++ H G ++R + +F NR GK M + D I + + + Sbjct: 498 EDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHD 557 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751 +L T G+ I + GR + G V + L KG++V ++ I + AD D Sbjct: 558 MLLFFTNAGKVYSKKAYEIPEY-GRMAKGLPVVNLLQLEKGEKVQTV-INVPEGAD-DNY 614 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808 + ++ M +R E ++++N + + +E L +Q IL + G+ Sbjct: 615 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 671 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 + D R R+ G+R ++ + + V ++ +DQ++++S+ G R P Sbjct: 672 AVTFNENDVRAMGRTAAGVRGINLRDHDYV---VGSGVLDADDQVLVISENGYGKRTPAA 728 Query: 869 EIRIASRATK---------------GVVIFSTAKDERVVSVERI 897 E + R K GV++ S KD V++ + I Sbjct: 729 EYPVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGI 772 >gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] Length = 916 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/723 (45%), Positives = 474/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] Length = 898 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/899 (40%), Positives = 544/899 (60%), Gaps = 73/899 (8%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++++I DEM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M Q+ + Y K AR Sbjct: 6 STLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKKSAR 65 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 + G+V+GKYHPHG++A+YDAL R+AQD+++R L++GQGNFGS+DGD PAA RYTE R+Q Sbjct: 66 VVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEVRMQ 125 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K A LL DL K TVD+ PNYD EP VL + PN+L+NG GIAVGMATNIP HNL Sbjct: 126 KLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPHNLT 185 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E++D +A+ID+P I + L ++GPDFPTG VILG GI++AY TGRGS+ +R I Sbjct: 186 ELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGTAGIRSAYLTGRGSVKVRARCEI 245 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E+ RE I+VTEIPYQVNK ++E+IA LVR+K++ I+D++D SDR G R+ I++K+ Sbjct: 246 EEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWIQVKK 305 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 +A ++LN+LY+ + LQ+ F VNM+A+ +PE L L+ F+ R VV RR +Y Sbjct: 306 DHAAQIVLNKLYKMSDLQTSFGVNMIAIVNGRPEVLNLEKCLRHFIDHRRTVVTRRCRYE 365 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA R ++ GL +AV ++D V+ +IR S +P+ A+ +LM + ++ + Sbjct: 366 LAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDG--FAKFLERCER 423 Query: 437 SSYTI--GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + I + G L+E Q +AIL++RL RLTGL RD + E L I E IL+ Sbjct: 424 PAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESILTDP 483 Query: 495 SRLLGIIKQELLSVKDELDTP---------------RRTRIVEGLLDMEDEDCIVREDMV 539 +L+ +I++ELL+++ E P RRT ++ L+++ D + E MV Sbjct: 484 DKLMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVADESMV 543 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V ++ YVKR+P YR Q RGG G +SG D+D + +LF S H VL F++ G V Sbjct: 544 VMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFTNTGRV 603 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 ++++V+ P+G+ R KAL+N L L +GE+I ++ + E+E ++ +VV A++ G ++ Sbjct: 604 FRKRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEEVD-DDHFVVLASRQGYIK 662 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R LS+F I SG IA + D ++ + DI++ ++ GQ +RF + +R G Sbjct: 663 RTSLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVRPM-G 721 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ L GD+V+++ ++ D Sbjct: 722 RTARGVRGMGLRDGDEVVNILVL------------------------------------D 745 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 EG + LTV EKG+GKRT + ++R +RSG G++ VS+ N Sbjct: 746 RENEGEVG-------------FLTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERN-- 790 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V + V + DQ+++V+ +G +IR PV I RAT+GV + +E VV + R+ Sbjct: 791 GKVVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVRLIRLNDEEVVVGLARV 849 >gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori 35A] Length = 828 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/882 (41%), Positives = 544/882 (61%), Gaps = 95/882 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E K I V I ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y Sbjct: 8 ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD AA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ KA+ +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG GIAVGMAT+IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H + E++D V V++NP+ LD ++E ++GPDFPTG +I G+ GI AY TGRG + +R Sbjct: 188 PHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVR 247 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+EKT ++E IV+ E+P+Q NKA ++E+I++L REK+I I+++RDESDR+G RVV Sbjct: 248 AKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVV 306 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN LY+ T++++ FS+ ++A+ +P+ FTL+ +L+ F+ R+ +++R Sbjct: 307 IELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIR 366 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KA+ RAH+L G IA+ N+DE+V++I+ S +PE A+ LM+R Sbjct: 367 RTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER----------- 415 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q++AILE+RL RLTGL R+ I+ E +L I + IL Sbjct: 416 ---------------FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGIL 460 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S RL ++K ELL VK++ + RRT I E +++ ED I E MVV++S+ GYVKRV Sbjct: 461 KSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRV 520 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y Q RGGKG+ ++DF+ + F+ +TH +LF ++ G +Y KV+++P S Sbjct: 521 DLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 580 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A GKA++N++SL E+I + + DE S + F TK+G V+R LS+F N Sbjct: 581 IAMGKAIVNLISLAPDEKIMATLSTKDFSDERS-----LAFFTKNGVVKRTNLSEFGS-N 634 Query: 670 R--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R SG A+ LD DE++S + + +L+ + G ++FP+ +R GR + GV G Sbjct: 635 RSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-GRTTRGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D V+ ++ GD +GN Sbjct: 694 IRLNENDFVVGAVVI-------------------------GD-------------DGN-- 713 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +L+VSE G GK+T + +R +R GKGI +++ + G LV+V Sbjct: 714 ------------KLLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTGNLVSVIS 759 Query: 847 VND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTA 886 V+D N +++++ +IRV + +I+ R T GV + TA Sbjct: 760 VDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA 801 Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 ++L E ++++S KG+ KR + NR GKG + + + + I F N Sbjct: 498 IEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENF---FVANT 554 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893 +D ++ +++KG L + V +I ASR G V + S A DE++++ Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPDEKIMA 601 >gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] Length = 804 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/890 (41%), Positives = 537/890 (60%), Gaps = 93/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M+Q G+ N+K+ K A Sbjct: 4 VLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ KYHPHG+ A+YDA+ R+AQDW+LR L++GQGNFGS+DGDP AA RYTE RL Sbjct: 64 GVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL D+ K+TVDF+PN+DG+ EP VL A +PN+LVNG GIAVGMAT++P HNL Sbjct: 124 SQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D VA+ID P+I LD +M + GPDFPTG L + GI+ AYATGRGS+ +R Sbjct: 184 SEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGR-LHKGGIREAYATGRGSLKLRAKVR 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ +G R +VVTEIPYQVNKA ++ +IA LV+ K+I DIA LRDESDRQG R+ IELK Sbjct: 243 QEEKNG-RVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIELK 301 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ DV+LNQL+++T+LQ+ F+VNM+A+ +P L+ +++ ++ R +VV RRT++ Sbjct: 302 RGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGEPRVLPLLELMRHYLEHRRQVVTRRTRF 361 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAHVL GL IA+ NLDEV+ +IR S + A+ L+ R Sbjct: 362 ELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIAR--------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+EVQ +AIL++RL RLTGL R+ I+ E L I IL + Sbjct: 407 -----------FGLTEVQAQAILDMRLQRLTGLEREKIQAEHRELQETIAYLRAILEDEA 455 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL G++K+ELL+VK+ RRT I E ED I E MV+T++ G++KR PL Sbjct: 456 RLWGVVKEELLAVKERHGDTRRTVINEFAGGFNPEDLIEDEPMVITMTAAGFLKRTPLEA 515 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGG G +DED T LF+ + H +LFF++ G VY+EKV+ LP S QARG Sbjct: 516 YRAQGRGGVGVQASRSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQARG 575 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNL----YVVFATKHGNVRRNKLSDFIQINRS 671 + +IL L + E + T++ S L + VFAT+ G +++ + ++ + S Sbjct: 576 VHIRSILPLAEDEEVATLL-------SVRGLTIPGHFVFATRRGLIKKTPIREYQNLTAS 628 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L D ++ V ++ +++L T+ GQ +RF ++ +R GR S GVRG+ L Sbjct: 629 GLIAINLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRA-TGRASQGVRGVRLKD 687 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+V+S+ +V +GD Sbjct: 688 GDEVVSLIVVPKG--------------------WTGD----------------------- 704 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L V +G+GKRT ++ R G G+ ++G L A+ V ++ Sbjct: 705 --------LLAVGTRGYGKRTPVEEYPTQGRGGLGV--LTFRSTPKVGQLAALLAVEGDE 754 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++++S +G IR V+++ SRAT GV I + +++ + + IR + Sbjct: 755 DLLVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804 >gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 853 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/913 (38%), Positives = 538/913 (58%), Gaps = 113/913 (12%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ + V I ++M+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM ++G +K Y Sbjct: 3 EQGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY L R+AQ W++R L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ K+TVDF+PN+D + +EPVVL AR PN+LVNG GIAVGMATN+ Sbjct: 123 EARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D VA I NP I ++ LM I+ PDFPTG +I G G++ A+ TGRG I+IR Sbjct: 183 PHNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIYGYAGVREAFETGRGRIIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE ++ ++IVVTEIPY VN+A +++ IA L EK++ IA++ DESDRQG R+V Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR +A+VILN+LY+Y+ LQS FSVN VAL +P LI ++ FV R EVV R Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKGRPRTLNLIDLISNFVEHRHEVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L+KA +RA +L GL I + NLDE ++IIR S P A+ L+ R Sbjct: 363 RTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIAR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q ++ELRL +LT + +D +R E L I++ DIL Sbjct: 412 ---------------FSLTERQAAYVVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + II+ EL+ + + RRT IV DM ED + M++T+SH GY+KR Sbjct: 457 AKVERRMKIIEDELMELGSKFGDKRRTEIVYATEDMNPEDFYADDQMIITISHQGYIKRT 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ ++AQ RGG G G +DEDF+ ++ + H +LFF+ G Y KV+ +P GS Sbjct: 517 ALAEFKAQNRGGVGSKGGATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSK 576 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L++ ++I + +D + Y+VF T++G +++ L + + Sbjct: 577 TSKGRAVQNMLNIEADDKINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPR 636 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D+++ V ++I++ + G+ +RF S +R GR + GV +++ Sbjct: 637 QNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRFHESKVREM-GRTATGVNAMAI 695 Query: 730 --AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 A GD+V+ M V AD Sbjct: 696 DKANGDEVVGMVAV--AD------------------------------------------ 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD------------------FRISNRSGKGIRA 829 K + +L VSEKG+GKR+ + +R++NR GKG++ Sbjct: 712 --------KTETVLVVSEKGYGKRSQLDELDENGNIKLDENGEPIAIYRVTNRGGKGVKT 763 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++++ + G LV++ V+D++ I++++ G IR+ V++IR+ RAT+GV Sbjct: 764 MNITE--KTGKLVSIKLVDDSNDIMIINKSGMAIRMHVSDIRVMGRATQGV--------- 812 Query: 890 RVVSVERIRESEI 902 R++++ER R EI Sbjct: 813 RLINLER-RNDEI 824 >gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1] gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] Length = 815 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D E+ Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GKRT + ++ I +R G++ T+V++ N G LV V V Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] Length = 851 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/895 (39%), Positives = 536/895 (59%), Gaps = 91/895 (10%) Query: 11 EEEKGI--TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 E+ GI VSI E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI++ ++ +N Sbjct: 3 EQNSGIQQPQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELANSYN 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + K ARI G+V+GKYHPHG++A+YDAL R+AQD+S+R L++GQGNFGS+DGD AA Sbjct: 63 RPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ + A L D+ K+TVDFRPNYD + QEP VL + PN+L+NG GIAVGMAT Sbjct: 123 RYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAVGMAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGE+ D ++D+P + LME+++GPDFPT + G+ +AY TGRG++ Sbjct: 183 NIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGKGLSDAYHTGRGTV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +RG +E+ + IV+ EIP+ +NK++++EKIA LV + +I I+DLRDESDR+G Sbjct: 243 KVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDESDRKGI 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVI+LKRG D+++N LY+YT L++ F +NM+A+ +P L L FV R EV Sbjct: 303 RVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALSCFVDHRREV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RRT+Y L KA RAH+L GL IA+ ++DEVV +IR S +P+ AR LMQR Sbjct: 363 VIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSEVQ RAIL++RL RLTGL R+++ E L +I+ Sbjct: 415 ------------------FELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547 +L + L +K+E+ +++ TPRRT ++ + L ++ ED I E++V+T+S GY Sbjct: 457 SVLENPEVLRSELKREIREIRETFATPRRTEVLTDALGGIDIEDLIPDEEVVITLSRRGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR L Y+ Q+RGGKG + + D+D+V + + H + F++ G +++ KV ++P Sbjct: 517 MKRTSLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664 GS A+G + N+L L +GE +TT++ F ED+ Y +F TK G V+R+ S Sbjct: 577 EGSRTAKGVHINNLLPLEEGEWVTTVLAVREFAEDK------YFLFVTKRGMVKRSSASL 630 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + + +SG +A+ L DE++ V +++ I+L T G +RF +R GR + GV Sbjct: 631 YARCRKSGLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDVRPM-GRVATGV 689 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 +GI+L + D V++ I+ +ND + E Sbjct: 690 KGIALRRQDVVVAGVIL---------------------------------KENDQTTE-- 714 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 I+++S GFGKRT +R+ +R GKGI V+ ++ G +V Sbjct: 715 ---------------IMSISANGFGKRTRVDLYRLQSRGGKGIINFKVT--SKTGPVVGA 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 PV DND +I+++ ++R+ V ++R RAT GV++ + VV +R+ E Sbjct: 758 MPVRDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 812 >gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] Length = 815 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 550/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] Length = 815 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] Length = 815 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92] gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92] Length = 873 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/925 (40%), Positives = 546/925 (59%), Gaps = 135/925 (14%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+I++ +++ I V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENILNLNQD----IKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R ++GQGNFGS+ Sbjct: 57 NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSI 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ A LL D+ KDTVDF PNYD S EP VL +R PN+L+NG Sbjct: 117 DGDSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATN+P H+L E++DG + ++DN + L+ +M+ I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIFGKKGIMEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG + +R +HIEK +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++R Sbjct: 237 YRTGRGRVKVRAKTHIEKKP-NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR+G RVVIELKR A +D++LN L++ T+++S F V M+A++ +P+ FTLI +LK Sbjct: 296 DESDREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKEPKIFTLIELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++R+T + L KAR RAH+L GL IA+ N+DEV+ +IR S + +AR LM++ Sbjct: 356 FLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q+ AIL++RL++LTGL R+ + NEL L Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLDNELKEL 449 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 EI +IL S + L +IK ELL +K + PR T IV+ D++ ED I E+MVV Sbjct: 450 LAEISRLDEILKSETLLENLIKDELLEIKSKFKVPRLTEIVDDYDDIDIEDLIPNENMVV 509 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 KV+++P GS A+GKA++N++ L E+I I+P + N + F TK+G V+R Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTD---FAQNKSLAFFTKNGIVKRT 626 Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---------------------LSVET---------- 689 LS+F I G A+ LD DE+ L VET Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEHGDEGVQPENLIDELGVETEINEIETIES 686 Query: 690 --------------CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQ 734 T E + + TK G C++F + +R GR + GV GI KGD+ Sbjct: 687 EIDEQSDENIDSIDDTDEKMLFIVTKKGMCLKFKLGKVRQM-GRTARGVTGIKFKEKGDE 745 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ A++ E QE Sbjct: 746 VVGAAVI---------------------------------------------ESNAQE-- 758 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL++S+KG GKRT++ ++R++NR GKG+ ++ G L+ V V+D ++ Sbjct: 759 -----ILSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--TRTGELIGVVMVDDEMDLM 811 Query: 855 LVSDKGTLIRVPVNEIRIASRATKG 879 ++ G +IRV + IR A R T G Sbjct: 812 ALTSSGKMIRVDMQSIRKAGRNTSG 836 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 505 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESF---FTSNTHDTLMFV 561 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFS 884 +D+G L + V +I SR KG + + Sbjct: 562 TDRGQLYWLKVYKIPEGSRTAKGKAVVN 589 >gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946] Length = 846 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/885 (42%), Positives = 545/885 (61%), Gaps = 91/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M + + Y K A Sbjct: 11 IKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLAISSRSPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+ ++GQGNFGS+DGD AA RYTE R+ Sbjct: 71 RIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDGDNAAAMRYTEARM 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL DL KDTVDF PNYD S EP VL +R PN+L+NG GIAVGMATNIP H L Sbjct: 131 TPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHCL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++DG + +IDNP+ L+ +ME I+GPDFPT +I G+ GI AY TGRG + IR +H Sbjct: 191 DELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIFGKKGIIEAYRTGRGRVRIRAKTH 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK G+++ IVV E+PYQVNK ++E+I LV+EK I I+++RDESDR G R+VIELK Sbjct: 251 IEK-KGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRDESDRDGIRLVIELK 309 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +D++LN LY+ T+++ F V ++A++ +P+ FTLI +L+ F+ R+ V++RRT + Sbjct: 310 REAMSDIVLNNLYKSTNMEVTFGVILLAIHNKEPKIFTLIELLQLFLRHRKTVIIRRTIF 369 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ +AH+L GL IA+ N+DE++ +I+ S + ++A+ L++R Sbjct: 370 ELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER--------------- 414 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ AIL++RL RLTGL RD I NEL L +EI+ DIL S + Sbjct: 415 -----------FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEA 463 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +IK+ELL +KD+ + R T IV+ D++ ED I E MVVT++H GY+KRVPL Sbjct: 464 LLNNLIKEELLELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHRGYIKRVPLKQ 523 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q+RGGKG+ V D+DF+ F+ TH +++F + G +Y KV+++P GS A+G Sbjct: 524 YEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 583 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 KA++N++ L E+I I+P F E +S + F TK+G ++R LS+F I G Sbjct: 584 KAVVNLIQLQADEKIMAIIPTTDFDETKS------LAFFTKNGVIKRTNLSEFKNIRSVG 637 Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ LD D +++ + TQE ++ + TK G C+RF + R GR + GV GI + Sbjct: 638 VRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREI-GRTARGVTGIRFKE 696 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 + + A V++ D Sbjct: 697 ENDCVVGAAVIYND---------------------------------------------- 710 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 ++ +LTV+EKG GKRT++ ++R+ NR GKG+ A ++ + LV V V+++ Sbjct: 711 -----QEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTP--KTADLVGVVIVDEDK 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ ++ G +IRV + IR A R T GV + S + V S+ R Sbjct: 764 DLMALTSSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLAR 808 >gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7] gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7] Length = 836 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/888 (40%), Positives = 534/888 (60%), Gaps = 97/888 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ Y KCA G V+G+ Sbjct: 15 MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A++YDAL R+AQ +SLR L++G GNFGSVDGDPPAA RYTE ++ K A +L Sbjct: 75 YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMAKMAVNMLT 134 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYD QEP VL +R+PN+L NG GIAVGMATNIP HNL EV++G Sbjct: 135 DIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIPPHNLHEVIEGMKI 194 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 VI NPD LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I +R + IE+ G R Sbjct: 195 VIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLRSKTSIEEIKG-RN 253 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 IVVTEIPY VNKA ++E IA LV++KR+ I DLRDE+ R G R+VIELK+ A+ V+L Sbjct: 254 CIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIVIELKKDANPQVVL 313 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+L+ YT LQ V ++AL P+ TL IL+ ++ F+ V+ RRT++ L KA++R Sbjct: 314 NKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAKERE 373 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ N+DEV+ I++ S + A+++L R Sbjct: 374 HILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFG---------------------- 411 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 L++VQ I ++ L RLTG+ R I +EL + + + DIL++ R+ II +E Sbjct: 412 ----LTDVQADHIAQMTLGRLTGMERQKIIDELAEITATVADLEDILANEQRVFDIIIEE 467 Query: 505 LLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 + +++++ RRT+I V G +D+ ED I E+ VVT +++GY+KR+P+SVY+AQ RG Sbjct: 468 VEAIQEKFGDERRTQIENVSGEVDI--EDLIPVEESVVTYTNVGYIKRMPISVYKAQNRG 525 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG +G+ R++D +T++ + S+H ++LF ++ G YK K + LP GS +RG + N+L Sbjct: 526 GKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSKASRGVNIKNLL 585 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L+ I ++ E ++ Y+V TK G ++R LS + + ++G IA+ LD D Sbjct: 586 ELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNGLIAIGLDEGD 642 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 EI V +N++L+ T G +R + +RV + R + GVR I L +GD V+SMA Sbjct: 643 EIAGVRLTGGQNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLREGDYVVSMA--- 698 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 R+ G T +LT Sbjct: 699 --------------------RIREGAT------------------------------VLT 708 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 VSE G G+R + ++ I +R G G+ ++ N G + + V++ D II++S G + Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGV----LNYKN--GEVCGIKVVDEEDDIIMISSDGIV 762 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR+ +I + R ++GV + A + +VV+ R +E DEAE E Sbjct: 763 IRLRACDISVMGRYSRGVRLMKVAGENKVVTFTR---TEHDDEAEIAE 807 >gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 848 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/891 (40%), Positives = 543/891 (60%), Gaps = 84/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K + K A Sbjct: 9 IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGM TNIPTHNL Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNIPTHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG++ +R Sbjct: 189 AEVISALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVTVRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +EQIVVTE+PY VNKA ++E+I+EL R+K+I I +RDESDR+G R+ I+++ Sbjct: 249 IEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLRISIDVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA VILN LY+ T LQ+ FS NM+A++ P+ +L IL A++A + EV+ RRT + Sbjct: 309 RDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVIRRRTVF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 369 ELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Y LS+ Q +AIL++RL RLTGL RD I E L I + DIL+ Sbjct: 412 -NGYA--------LSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++ + RRT + G +L +EDED I ED++VT+++ GY+KRV Sbjct: 463 RVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATG 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P QA+ Sbjct: 523 EFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L+ E+I T++ E+ +N Y+ F T+ G V+R + +F I +G Sbjct: 583 GIPVVNLLNFEGNEKIQTVINV-RGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLK 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+LSV+ +I++ T G V F + +RV GR++ GVRGI L +GD Sbjct: 642 ALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIRLREGDL 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + L+ D +V Sbjct: 701 VVGSDV----------------------------------LEKDHNV------------- 713 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ + I+ Sbjct: 714 ------LIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVSGQEDIM 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + +G +IR V+ + RAT GV + + +V ++ ++ E++++ Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816 >gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] Length = 815 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] Length = 815 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D E+ Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] Length = 826 Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/902 (40%), Positives = 545/902 (60%), Gaps = 86/902 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRT++ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DILS R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILSKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRAAKGLPVVNLLQLEKGEKVQTVINIPE---GADDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GV Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ I L AD D+ + Sbjct: 691 RGINLREHDYVVGSGI-LGAD---DQVLV------------------------------- 715 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ISE+ G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 716 ISEK------------------GYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +N N+ +++++ G +IR ++++ R+T GV + + D +V S+ + E D Sbjct: 756 TIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQD 815 Query: 905 EA 906 + Sbjct: 816 QT 817 >gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] Length = 815 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] Length = 838 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/895 (40%), Positives = 544/895 (60%), Gaps = 89/895 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V++++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM +MGV +K Y K ARI Sbjct: 15 VNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMGVTPDKPYKKSARIV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD AA RYTE R+ K Sbjct: 75 GDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEARMSKI 134 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +L D+ KDTVDF+ NY +EPV L +R+PNVLVNG GIAVGMATNIP HNLGE Sbjct: 135 AMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAVGMATNIPPHNLGET 194 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D ++ NPD+ ++ LME + GPDFPTG +++G++GI+ AY TG+G I++R IE+ Sbjct: 195 IDALSLLMKNPDVSVNELMEALPGPDFPTGGIVMGKSGIRKAYQTGKGKIIVRSRVEIEQ 254 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + D+E+IVVTEIPY VNKA ++E+IAEL REK+I I + DES R+G R+V+E++R Sbjct: 255 MAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADESGREGMRIVVEVRRDT 314 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 SA+V+LN LY+YT+LQ F NM+A++ P+ +L IL ++ ++ EV+ RRT++ Sbjct: 315 SANVVLNNLYKYTALQVTFGFNMLAIDKGVPKIMSLKEILTKYLEYQIEVIRRRTEFEKR 374 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA DRAH+L GL A+ +DE++ IIR S + E A+ +L++R Sbjct: 375 KAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIER------------------ 416 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 S +Q +AIL++RLARLTGL R+ I E N L I+ +ILSS + ++ Sbjct: 417 --------FEFSPIQAQAILDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIM 468 Query: 499 GIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 II+ EL +K+ RRT + G L +EDED I ED+++ ++ GY+KR+ ++ Sbjct: 469 AIIEDELADIKNRFPGERRTELRVGELTSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQ 528 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGG+G G+ M D D + L STH S+LFF++ G VY+ K + +P A+G Sbjct: 529 VQNRGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIP 588 Query: 618 LINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 ++N+L++ + E + I+ P DE Y+ F TK+G V+R+ +S + I +G IA+ Sbjct: 589 VVNLLNIEKEEYVKEIIVLHPSDEDQ----YLFFVTKNGIVKRSDVSAYANIRNNGLIAL 644 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 + DE+++V + +I++ + G + F + R+ GR + GVRG+ L +GD V+ Sbjct: 645 NMREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIM-GRTATGVRGMKLREGDYVV 703 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 A++ + E N+ Sbjct: 704 GAAVL--------------------------------------NPESNV----------- 714 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 L V+E+G+GK+T + ++ + NR GKGI+ +++S + G L + ++ ++++ Sbjct: 715 ----LVVTERGYGKQTPASEYAVKNRGGKGIKTSNISA--KSGQLAGIVSTEGDEDLMVM 768 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910 +D+G +IR + I + SRAT GV + +V S+ +I + E E TE Sbjct: 769 TDQGVVIRFNIASISVTSRATLGVKMIRLDDGAKVSSITKIMKTGEETQELAETE 823 >gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] Length = 815 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571] gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571] Length = 827 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 Y+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NSYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ DAD D+ Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +SEKG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 713 ---------------VLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I++++ G +IR ++ R+T GV + + D +V S+ Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805 >gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] Length = 869 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/891 (40%), Positives = 528/891 (59%), Gaps = 84/891 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ E I + I EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M +MG +++ Sbjct: 2 EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 K A+ GEV+ KYHPHG++A+Y L R+AQ W+LR L++GQGNFGSVDGD PAA R Sbjct: 62 PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + A +L D+ K+TVDF+ N+D + QEP VL R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 + HNL E +DGCVA ID +++ LM I+ PDFPTG I G G+K A+ TGRG I Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIYGYAGVKEAFETGRGRI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307 V+R + IE S RE I+VTEIPYQVNKA ++ IA+LV E+RI I+++ DES + G Sbjct: 242 VLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+VIE+KR A+A V+LN L++ T LQS F+VN +AL +P L ++ FV R + Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RR+ + L KAR+RAH+L GL IAV N+DEV+ IIR S N + A+ L +R Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRER------- 414 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 LSE+Q RAI+++RL LTGL D +R E + L I+ Sbjct: 415 -------------------FELSELQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYL 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +L+ + L+ ++K ELL VK++ PRRT IV + ED ++M++T+SHLGY Sbjct: 456 EGLLADDNLLMQVVKDELLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR PL +R+Q RGG G G R+EDF+ ++ S H ++L F++ G + V+++P Sbjct: 516 IKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIP 575 Query: 608 IGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 G+ +G+A+ NIL++ +RIT I +D + Y+VFAT G +++ L Sbjct: 576 EGAKSTKGRAIQNILNIEADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEA 635 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 + G A+KL+ D ++SV + +ILL K G+ +RFP S +R GR + GV Sbjct: 636 YSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSM-GRVTTGV 694 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ L +G + + +V D + Sbjct: 695 RGMILDEGGEDAIVGMVALKDPE------------------------------------- 717 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ IL VSE G+GKRT+ +RI+NR GKG++ +++ + G+LV Sbjct: 718 ------------KETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITE--KTGSLVDF 763 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSV 894 V D +++++ G IR+P++ I + RAT+GV + + +++ + + SV Sbjct: 764 RSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASV 814 Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++ I+T+S G+ KRT DFR R G G + S E + ++ + + ++L Sbjct: 504 DEMIITISHLGYIKRTPLRDFRSQARGGVGSKG---STTREEDFIEYIYSASMHATLLLF 560 Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899 + KG +PV +I +++TKG I + D+R+ + RI++ Sbjct: 561 TTKGRCFWLPVYKIPEGAKSTKGRAIQNILNIEADDRITACIRIKK 606 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 52/269 (19%) Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQEN 694 PED + + + ++ + G ++R L DF R G + +R+E I + + + Sbjct: 497 PEDFYADDEM-IITISHLGYIKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHA 555 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 +LL T G+C P+ I G KG + + +L+ +AD C Sbjct: 556 TLLLFTTKGRCFWLPVYKI----------PEGAKSTKGRAIQN---ILNIEADDRITACI 602 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 I L+ D + +++ + +G K+T Sbjct: 603 ----------------RIKKLQKDPEF-------------VASHYLVFATLQGMIKKTPL 633 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 + SN KG+ A K+NE ++V+V N +I+L + G IR P +++R Sbjct: 634 EAY--SNPRSKGVFAI---KLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSMG 688 Query: 875 RATKGV--VIFSTAKDERVVSVERIRESE 901 R T GV +I ++ +V + +++ E Sbjct: 689 RVTTGVRGMILDEGGEDAIVGMVALKDPE 717 >gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] Length = 815 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R + I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE++ ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D+ E Sbjct: 693 KLRANDYVVGSSIV----DDHSE------------------------------------- 711 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 712 ------------VLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107] Length = 916 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/723 (45%), Positives = 474/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 848 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/891 (40%), Positives = 543/891 (60%), Gaps = 84/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K + K A Sbjct: 9 IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGM TNIPTHNL Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNIPTHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG++ +R Sbjct: 189 AEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVTVRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ +EQIVVTE+PY VNKA ++E+I+EL R+K+I I +RDESDR+G R+ I+++ Sbjct: 249 IEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLRISIDVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R ASA VILN LY+ T LQ+ FS NM+A++ P+ +L IL A++A + EV+ RRT + Sbjct: 309 RDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVIRRRTVF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL IA+ ++DE++ IIR S E A+ L+ Sbjct: 369 ELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Y LS+ Q +AIL++RL RLTGL RD I E L I + DIL+ Sbjct: 412 -NGYA--------LSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++ + RRT + G +L +EDED I ED++VT+++ GY+KRV Sbjct: 463 RVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYIKRVATG 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P QA+ Sbjct: 523 EFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G ++N+L+ E+I T++ E+ +N Y+ F T+ G V+R + +F I +G Sbjct: 583 GIPVVNLLNFEGNEKIQTVINV-RGEAGESNDYLFFVTRLGVVKRTAVKEFANIRTNGLK 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE+LSV+ +I++ T G V F + +RV GR++ GVRGI L +GD Sbjct: 642 ALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIRLREGDL 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + L+ D +V Sbjct: 701 VVGSDV----------------------------------LEKDHNV------------- 713 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L ++EKG+GK+T ++ I R GKGI+ ++++ N G L + V+ + I+ Sbjct: 714 ------LIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVSGQEDIM 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 + + +G +IR V+ + RAT GV + + +V ++ ++ E++++ Sbjct: 766 VTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816 >gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] Length = 827 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/890 (40%), Positives = 538/890 (60%), Gaps = 86/890 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 ++VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GV Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ DAD D+ Sbjct: 691 RGINLRDHDYVVGSGVL---DAD-DQ---------------------------------- 712 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +SE G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 713 ---------------VLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ I++++ G +IR ++ R+T GV + + D +V S+ Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASL 805 >gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] Length = 815 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV + Sbjct: 3 NQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ KDT+D++ NYD + EPVVL AR P +LVNG GIAVGM T Sbjct: 123 RYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL E++ G +++NPD+ + LM I GPDFPTG +I+GR+GI AY TG+G+I Sbjct: 183 NIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGNI 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R ++I+ RE+I+++EIPY VNKA +++KIA+L R+K + I ++DESD++G Sbjct: 243 VVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGL 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T LQS F VNMVA+ P L IL+ ++A +E + Sbjct: 303 RITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQENI 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RRTKY L KA RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R Sbjct: 363 ITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L +I + Sbjct: 415 ------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I + ++ ++DED I ++++++T++H GY Sbjct: 457 DILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P ++ Q RGG+G G+ ++++DF+ L V+TH +LFF++ G VY +K + +P Sbjct: 517 IKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G +IN++ L +GE + ++ +++ N Y++F TK+G V+R +S+F Sbjct: 577 EYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFTN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I RSG IA+ L DE+ +V +IL+ T+LG V F + +R GR + GVRGI Sbjct: 634 IRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRGI 692 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D V+ +IV D E+ Sbjct: 693 KLRANDYVVGSSIV-------------------------DDNSEV--------------- 712 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 L +SEKG+GKRT + ++ I +R G++ +V++ N G LV V V Sbjct: 713 -------------LVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTVV 757 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + ++ ++L++D G +IR+ V+ + RAT GV + + +V S+ R++ + Sbjct: 758 DGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSED 811 >gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63] Length = 856 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/729 (43%), Positives = 491/729 (67%), Gaps = 36/729 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q+G++ +K Y KCA Sbjct: 13 IIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLDPSKPYHKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G+V+G YHPHG+A++YDA+ R+AQD+S+R +L++G GNFGSVDGDPPAA RYTE R+ Sbjct: 73 DTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPAAYRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ K+TVDF NYD +EP VL +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 133 SKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGMATEIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D +IDNPD +L +ME + GPDFPTG +I+GR+GI+ AYATGRG I +R + Sbjct: 193 GETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRGKITVRAKTE 252 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + R +I+VTE+PY+VNKA ++E IA+LV++KRI I+++ D SDR+G + I++K Sbjct: 253 IIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRKGMHIEIDIK 312 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS ++LNQL+ YT LQ+ F M+++ +P+ +L +L+ ++ F+ EV+ RRT + Sbjct: 313 RDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQAEVIRRRTDF 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDRAH+L GL IA+ +DEV++IIR S + +A+ LM+R Sbjct: 373 DLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER--------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L +VQ +AI+++RL +LT + + I +E+ +L +I+E L+IL+S Sbjct: 418 -----------FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEP 466 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R L I+K+E++ ++++ PRRT I V G +D+ ED I +E+ V+T++ GYVKR+ Sbjct: 467 RQLEIVKEEIMQIRNKYADPRRTEICAVSGEVDI--EDLIPQEECVLTLTQFGYVKRLSA 524 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+ QRRGG+G SG+ R+ED ++F++++H VLFF+ G VY+ K + +P GS Q+ Sbjct: 525 DTYKIQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQS 584 Query: 614 RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +G + N++ ++ E++T+++ PE DE Y+V T+ G ++R +L+ + + G Sbjct: 585 KGVNIANLIPISPDEKVTSMIRVPEFDEEK----YLVMVTRQGIIKRIELNAYNTSRKGG 640 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA++L+ DE+ V + +++ TK G +RF + IR GR + GV+ ++L +G Sbjct: 641 LIALELNEGDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAM-GRQARGVKAMALKEG 699 Query: 733 DQVISMAIV 741 D V+ M++V Sbjct: 700 DCVVGMSVV 708 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/280 (24%), Positives = 126/280 (45%), Gaps = 59/280 (21%) Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK-------IAMKLDSR-DEILSVETCTQENDILL 698 YV+F T G V R K + + +R K I + D + ++ V +E +++ Sbjct: 559 YVLFFTDKGRVYRLKCYEVPEGSRQSKGVNIANLIPISPDEKVTSMIRVPEFDEEKYLVM 618 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758 T+ G R ++A + G+ + L +GD++ Sbjct: 619 VTRQGIIKRIELNA---YNTSRKGGLIALELNEGDEL----------------------- 652 Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERC--------QELKLKE------------- 797 A R+ G+++ I + K ++ N ++ R + + LKE Sbjct: 653 -AWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEGDCVVGMSVVREG 711 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 +LTVSE G+G+ +S D+R+ +R GKG+ K ++ A+ VN +D II++S Sbjct: 712 GLVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHTEKYGDVAAIKV---VNLDDDIIIIS 768 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++G +IR+ IR+ +R +KGV + D+RVV++ R+ Sbjct: 769 EEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARV 808 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 83/158 (52%), Gaps = 18/158 (11%) Query: 754 YMKHMSAQRRLISGDTEEITSLKND---------SSVEGNISEERCQELKLKEQFILTVS 804 Y++ ++++ R + EEI ++N +V G + ++L +E+ +LT++ Sbjct: 458 YLEILASEPRQLEIVKEEIMQIRNKYADPRRTEICAVSGEVD---IEDLIPQEECVLTLT 514 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 + G+ KR S+ ++I R G+G+ + +I A +F +N +D ++ +DKG + R Sbjct: 515 QFGYVKRLSADTYKIQRRGGRGVSGMS-RREEDIAA--EMFVINSHDYVLFFTDKGRVYR 571 Query: 865 VPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 + E+ SR +KGV I + DE+V S+ R+ E Sbjct: 572 LKCYEVPEGSRQSKGVNIANLIPISPDEKVTSMIRVPE 609 >gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae] Length = 916 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/723 (44%), Positives = 473/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE+IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTM----------YLSEVQTRAILELRLARLTGL 468 R W +S +++++ + +G + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] Length = 916 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/723 (45%), Positives = 473/723 (65%), Gaps = 21/723 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+Y + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + ++ C+ ++D P ++D L++II+ PDFPTGA I G G++ Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240 Query: 241 YATGRGSIVIRGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 + +I +L +I + +DILS R+ II+ EL +K RR+ I D+ Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 DED I + +MVVT++H GY+K P + Y+AQRRGG+G+ +DEDF+ LF+ +TH Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNN 645 ++ F++LG + KV++LP G +RG+ + N++ L +GE+++ I+ FPED+ Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQ----- 655 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 YV FAT G V++ +LS F + G A+ L D ++ +DI+L + LG+ Sbjct: 656 -YVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKA 714 Query: 706 VRF 708 +RF Sbjct: 715 IRF 717 Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 2/102 (1%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT + G+GKRT D+ N+ G+G A + + N G LVA V + D ++L++ Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERN--GDLVAATLVGETDDLMLITSG 855 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G LIR V +IR RA GV + + + E +VS+ER+ E E Sbjct: 856 GVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAEDE 897 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 44/232 (18%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-EKVW 604 G VK+V LS ++ R +G + +++ D++ ++ FS+LG + + W Sbjct: 664 GMVKKVQLSAFKNVR--AQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNEYW 721 Query: 605 R------------------------------LPIGS----PQARGKALINILSLNQGERI 630 LP G P RG + + L +I Sbjct: 722 EKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADGKI 781 Query: 631 TTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 +++ F PE E S L V+ AT +G +R ++D+ + N+ G+ IA+ R+ L Sbjct: 782 VSLITFAPETEES--GLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839 Query: 688 ETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 T E +D++L T G +R + IR GR + GV+ I+L +G+ ++S+ Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSL 890 Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 V+T + GY KR P++ Y + +GG+G + R+ D V + T ++ +S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETD-DLMLITSGG 856 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + + KV ++ R A + +++L++GE + ++ EDES + V+ Sbjct: 857 VLIRTKVEQI---RETGRAAAGVKLINLDEGETLVSLERVAEDESELSGASVI 906 >gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP] gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis] Length = 887 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/902 (39%), Positives = 539/902 (59%), Gaps = 87/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE G+ V+++ EMQNS+L YA++VI+ RAIPD RDGLKPVHRRIL+GM +G+ + Sbjct: 58 EEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSS 117 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG+A++Y+A+ RMAQ++S+R L++G GNFGS+DGDP AA R Sbjct: 118 AFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMR 177 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K + +L+ + K+TV+F PNYD S EP VL +R+PN+LV GG GIAVGMAT Sbjct: 178 YTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATT 237 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 I HNL E + +A NP I L LME I+GPDFPTG +ILG GI +A+ TG+GSI Sbjct: 238 IAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTKGIIDAFETGKGSIS 297 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR + IE S + +I+V+EIPY V K ++EKIA LV+EK I I+DLRDE++R+G R Sbjct: 298 IRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIR 357 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ +V+LN+L++ T+LQ F+VNMVAL +P+ +L L+ ++ ++E+V Sbjct: 358 IVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGEPKLLSLKDALRVYLDHQKEIV 417 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RR K+ L K+ R H+L GL IAV+N+DEV+RIIR S A+ +L Q+ Sbjct: 418 IRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQK--------- 468 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+QT+AI+E+RL RLTGL + + E+ L I I + Sbjct: 469 -----------------FSLSEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKE 511 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S +L+ +I +EL +K++ R T+I + ++ DED I ++ + S GYV Sbjct: 512 ILNSEQKLIDLIVEELEEIKEKYGDKRLTQIDSYAIANISDEDLIPERNIAIIQSVKGYV 571 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ LS Y+ Q RGG G S ++D + + +THT +L F+S VY+ + ++P Sbjct: 572 KRINLSEYKVQNRGGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPE 631 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S Q++G IN++ + + E + +I+P ++ + ++V T++G +++ K+ F +I Sbjct: 632 SSKQSKGIPFINLIQIEKDEEVVSILP---AQNYDDGKFLVTLTQNGLIKKTKIEHFQRI 688 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GKIAM + D+++ + +I++ + G+ VRF +S +R GR S GVR I Sbjct: 689 NTNGKIAMVILENDKLVRAMILNNDEEIIVGSSEGKIVRFDLSEVR-DTGRKSAGVRAIK 747 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 LA + IS++ +S EG Sbjct: 748 LAPKHKAISLS---------------------------------------ASSEG----- 763 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++ ++ GFGK+T D+R + R+ KG+ K+++ G LV V Sbjct: 764 ---------KYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITI---KVDKAGKLVHSGFVE 811 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ II+++ KG IR + ++ SR+TKGV I KDE++ S+ I ++I +E Sbjct: 812 GSEDIIILNSKGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVNKIDEEISK 871 Query: 909 TE 910 T+ Sbjct: 872 TQ 873 >gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] Length = 850 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/884 (40%), Positives = 534/884 (60%), Gaps = 86/884 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EM+ SY+ Y+++VI+ RA+PD+RDG KPV RRIL+ MM +G +K Y+K A Sbjct: 7 IIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAYMKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R GEV+GKYHPHG+++IY AL RMAQDW+LR L++GQGNFGS+DGD PAA RYTE R+ Sbjct: 67 RTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYTESRM 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ DL K+TVD + N+D +EP VL R PN LVNG GIAVGMATN+PTHNL Sbjct: 127 SLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVPTHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGCVA IDNP+ID++ LME I+ PDFPTGA I+G G+++AY TG G I++R + Sbjct: 187 SEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIMGLQGVRSAYETGHGRIILRAKTE 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + IVV EIPY VNKA +++ IA LV EKRI I+D+ DESDR+G R+VIE+K Sbjct: 247 IE-NGPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIVIEVK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+V+LN+L++ T+LQS F+VN V L +P+ +L ++ FV R EVV+RRTKY Sbjct: 306 RDANANVLLNKLFKMTALQSSFAVNCVGLVHGRPKVLSLKDCIRTFVDHRHEVVIRRTKY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH+L GL IA N+DEVVR+IR S P A L +R Sbjct: 366 DLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKR--------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L ++Q +AI+++RLA+LT + +D + E L +I IL+ Sbjct: 411 -----------FELDDIQAKAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 ++K EL VK++ RRT I + ED +++++T+SHLGY+KR PL+ Sbjct: 460 LCRQVMKDELNEVKEKYGDVRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAE 519 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGG G G RD DF+ ++ + H ++LFF++ G Y KV+ LP G+ A+G Sbjct: 520 FRAQGRGGVGSRGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKG 579 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +A+ N+L++ + + + + ++ +N + YVVF T G +++ L ++ + +G Sbjct: 580 RAIQNMLNIEADDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPRTNGV 639 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732 A+ + D ++SV ++++++ + G+ +RF A+R GR S GVRGI L + Sbjct: 640 KAITIREEDRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTM-GRVSTGVRGIRLDEDG 698 Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 DQ + M + ND Sbjct: 699 EDQAVGMVCI-----------------------------------NDP------------ 711 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +++ I+ VS++GFGKR++ D+R +NR GKG++ ++ ++ G + A+ V D++ Sbjct: 712 ----EKETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLT--DKTGKVAAIKSVTDDN 765 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSV 894 +++++ G +R+ V ++R+ RAT+GV + + T +++ + SV Sbjct: 766 DLMIINRSGITLRLKVADVRVMGRATQGVKLINLTKRNDSISSV 809 >gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1] gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1] Length = 826 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/902 (40%), Positives = 544/902 (60%), Gaps = 86/902 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM++I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRT++ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ T++ PE+ ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEN---ADDNYLFFITKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T + +IL+ T LG V F + +R GR + GV Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L + D V+ VL AD D+ + Sbjct: 691 RGINLRENDYVVGSG-VLGAD---DQVLV------------------------------- 715 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ISE KG+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 716 ISE------------------KGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +N N+ +++++ G +IR + ++ R+T GV + +V S+ + E D Sbjct: 756 TIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTEEEQD 815 Query: 905 EA 906 + Sbjct: 816 QT 817 >gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1] gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1] Length = 625 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/633 (51%), Positives = 433/633 (68%), Gaps = 32/633 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y K A Sbjct: 8 VLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++++YDA+ RMAQD+S R LI+G GNFGSVDGD AA RYTE R+ Sbjct: 68 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ KDTVDF PNYD S +EP VL A+ PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +IDNP++ + LM I+GPDFPTG +ILGR GIK AY TGRG I +R + Sbjct: 188 GEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLILGRDGIKQAYTTGRGVIKMRAQAR 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +EK S + +IVVTEIPYQVNKA ++E IA LVR+K I I DLRDESDR G RVVIEL+ Sbjct: 248 VEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIELR 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +ADVILNQLY++T LQ F V M+AL +P L +L ++ +++V++RRTK+ Sbjct: 308 RDVNADVILNQLYKHTQLQETFGVIMLALVDGRPRILNLRDMLHYYLEHQKDVIIRRTKF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR RAH+L GL IA+ +LDEV+ IR S PE AR L+ + Sbjct: 368 ELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAK--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD-ILSSR 494 LSE Q +AIL++RL RLTGL R+ I E + +E E L+ +L+ Sbjct: 413 -----------FALSEKQAQAILDMRLQRLTGLEREKIEEEYKDV-LETIEWLEAVLADE 460 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +++GIIK ELL VK RRT I + +E ED I ED+V+T++H GYVKR+P+ Sbjct: 461 RKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVD 520 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR+QRRGG+G +G+ ++EDFV LF+ +TH ++LFF++ G VY+ K + LP A+ Sbjct: 521 TYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAK 580 Query: 615 GKALINILSLNQGERITTIMPF----PEDESSW 643 G A+IN+L + + E+IT ++P P D SSW Sbjct: 581 GSAIINLLPMEKDEKITAVIPIKDSAPTDISSW 613 Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + ++S+ ++L E ++T++ +G+ KR +R R G+G+ + + + Sbjct: 486 ITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGTKEEDFVEH 545 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERI 897 L F + I+ ++KG + R+ E+ A R KG I KDE++ +V I Sbjct: 546 L---FVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKITAVIPI 602 Query: 898 RESEIVD 904 ++S D Sbjct: 603 KDSAPTD 609 >gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] Length = 812 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/891 (39%), Positives = 537/891 (60%), Gaps = 90/891 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I S + +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ +K + Sbjct: 4 QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+Y++ RMAQD+S R LL++G GNFGSVDGD AA RYT Sbjct: 64 RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG GIAVGMATNIP Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +HNLGEVVDG A+IDNP+I +D LM ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ S + +IVVTEIPYQVNKA ++E IAEL ++K I I LRDESDR G R+V Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN L+++T L+ F M++L P +L ++ ++ +EEV+ R Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S A+ LM + Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+ AIL++RL RLTGL R+ I ++ + I D+L Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S R++++ ++K EL+ +K++ RRT+ + + D + E M +TV+ Y+KR+ Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R QR+GG+G SG+ M+D+D+V + STH +LFF+ G VY + V P+ S Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577 Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ALIN + +L + ER+T ++ D S+ Y++ T++G V++ + ++ IN+ Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINK 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA++L+ D ++ V + D++L T+ G +RF I+ + A GR + GV GI L Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRAVGRVAAGVHGIKL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + GD+V+ I DE+ + Sbjct: 696 STGDEVVGAVIA-------DEKDIF----------------------------------- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 T+S G KR + + R+GKG+R + + E+ ALVA +D Sbjct: 714 ------------TISADGNAKRNKESAYHVQGRNGKGVR--NFKRGFEVVALVA---ADD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE 899 ND+++ VS+ G I+ ++I ++A +GV++ + +R+ S++ + E Sbjct: 757 NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASIDVVPE 807 Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 15/118 (12%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ + KR S D RI + G+G+ K+ + + + + +++++ Sbjct: 502 EPMTITVTKHNYIKRMESSDIRIQRKGGRGVSGM---KMKDDDYVWKIMNTSTHNRLLFF 558 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIF----STAKDERVVSVERIRESEIVDEAESTE 910 +D+G + V E ++SR +G + + KDERV +E++D STE Sbjct: 559 TDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKDERV--------TEMLDPDMSTE 608 >gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] Length = 816 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/888 (40%), Positives = 528/888 (59%), Gaps = 86/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ K Y K A Sbjct: 10 VLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPYKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGD PAA RYTE R+ Sbjct: 70 RIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYTEVRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ KDTVDF PNYD S +EP VL ++ P +L+NG GIAVGMATNIP HNL Sbjct: 130 AKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+G V +IDNPD+++ LM I+GPDFPTGA ILG+ GI +AY TGRG + IR + Sbjct: 190 CEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVKIRAKAE 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 I + + IV+TEIPYQVNKA +++ IA L ++ I I + D S + G ++V+EL Sbjct: 250 IVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMKIVVEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K A DV+LN+LY++T+LQS F + M+AL +P L +L+ ++ +++V+ RRT+ Sbjct: 310 KSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQKDVITRRTR 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ N+D V+ IR S E AR LM+ Sbjct: 370 YELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALME--------------- 414 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q +AIL++RL RLTGL R I E L I +L+ Sbjct: 415 -----------NFKLSQRQAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLESVLADE 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +++ IIK++L +K RRT I +M+ ED I ED+VVT+SH GY+KR L Sbjct: 464 HKVMNIIKEDLQEMKKRFGDERRTEISIDSSEMDIEDLIAEEDIVVTISHQGYIKRQTLD 523 Query: 555 VYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +R+Q+RGG G++G + +D LF+ +TH ++LFF++ G VY++K + +P S A Sbjct: 524 NFRSQKRGGVGKTGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIPEASRTA 583 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G A+IN+L+L GE+IT ++P E Y+ AT G V++ L D + ++G Sbjct: 584 KGTAIINLLALMPGEKITAVIPVKEFREEQ---YMFMATNKGTVKKINLKDLESVRKNGM 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ LD ++++ VE ++I+L T+ G +RF +R GR + GV+GISL GD Sbjct: 641 IAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTM-GRTAHGVKGISLNYGD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V++M V D++ Sbjct: 700 EVVAMDSVSDEDSE---------------------------------------------- 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +LT +E G GKRT ++R R GKGI +++ + G ++ + +N + +I Sbjct: 714 ------VLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITE--KTGLVIGMKVINPDQEI 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++++ G +IR V++I R T+GV + + D++VVS+ I E Sbjct: 766 MMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEE 813 >gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] Length = 823 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/887 (41%), Positives = 529/887 (59%), Gaps = 91/887 (10%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +ITDEM+++YL YA++VI+ RA+PD RDGLKPV RIL+GM MG+ N+ + KCARI G Sbjct: 10 NITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVG 69 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 E++GK HPHG++A+YDAL R+AQ W++R L+EGQGNFGS+DGDPPAA RYTE RL A Sbjct: 70 EILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARLTPIA 129 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 130 EEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLNEVC 189 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 D +IDNPD ++ L I+ GPDFPT +ILG GI NAY+TGRG I IR +HIE+ Sbjct: 190 DAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAHIEEA 249 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + IVVTE+PYQVNKA + E+IAEL R+++I I D+RDESDR G R+VI LK+ A Sbjct: 250 ARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDAQ 309 Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +LN LY++T +Q+ F VNM+AL G +P TL +L+ ++ R EV+ RRT++ L Sbjct: 310 PKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRTEFDL 369 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +KAR RAH+L GL IA+ NLD V+ IR S + + AR LM Sbjct: 370 DKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMN------------------ 411 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE Q AILE++L RL L R I E + I E DIL++ ++ Sbjct: 412 --------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIQLIGELEDILANPRKI 463 Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +IKQ+L +K + PRRTRI+ + ++ DED I +++T++ GYVKR +Y Sbjct: 464 LHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGG+G G +R++D V + ST +LFF+ G VY+ K LP S A+G Sbjct: 524 RTQRRGGRGIRGATIREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRTAKGL 583 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 L+N+++L GE++T+++ P+ E + Y++ AT G ++R + ++ Q+ +G IA+ Sbjct: 584 PLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIKEYSQVRSNGLIAI 640 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ DE+ V D+LLTT GQ +RF +R GR + GV GI+LA+GD+V+ Sbjct: 641 GLEDGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEGDRVV 699 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM +L + Sbjct: 700 SM-----------------------------------------------------DLARE 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L V+ G+GKRT+ ++ + R+ G+ + +E+ A+ V V+++ + + Sbjct: 707 NAALLVVTANGYGKRTALEEYPVKGRATGGVITIRLRPGDEV-AVAHV--VHEHSLLTFI 763 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS--VERIRESE 901 ++ G ++R + I + R T+GV I + A ++RV + VE ESE Sbjct: 764 TESGMVMRTEADGISMFGRNTQGVTIVNLAPNDRVAALCVEEPDESE 810 >gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64] gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64] Length = 926 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/896 (41%), Positives = 547/896 (61%), Gaps = 94/896 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V + EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ + ++ K Sbjct: 80 GIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHRKS 139 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R L++G GNFGS+DGD AA RYTE R Sbjct: 140 ARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTEAR 199 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L+ + KDTVDF NYD S +EP VL +R+PN+LV+GG GIAVGMAT+IP HN Sbjct: 200 MSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHN 259 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE +D +A+ +NP+ID+ LME + GPDFPTGA+ILG GIK+AY TG+GSI IR ++ Sbjct: 260 LGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIPIRSIA 319 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ S + +I+VTEIPY+V K A++EKIAELV++K+I IADLRDES R+G R+VI++ Sbjct: 320 KIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIVIDV 379 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ + V+LN+LYR T+LQ ++VN VAL +P+ L L+ ++ +EEVV RR K Sbjct: 380 KKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVVTRRLK 439 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA+DR H+L GL IAV N+DEV+ II+ S A+ L +R +N Sbjct: 440 FDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR-FN----------- 487 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E QT+AI+++RL RLTGL +++ E+ L EI+ IL++ Sbjct: 488 --------------LTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANH 533 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S L+ +I +EL +K++ + RRT+I ++G + DED I + D+V+T S G+VKR+ Sbjct: 534 SELIKLIVKELTEIKEKYNDKRRTQINYEIQGTIT--DEDLIPQRDIVITTSAKGFVKRM 591 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ QRRGG G + D+D + + +THT +L FS+ VY+ + +P S Sbjct: 592 DLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSR 651 Query: 612 QARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 Q++G A INI L + +GERI +++P ++ + Y+ ATK+G +++ +L+++ +I Sbjct: 652 QSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEYERI 708 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ T E+ ILL + V+F R + R + GV+GI+ Sbjct: 709 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 767 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L V S + +S EG Sbjct: 768 LDSHQTVSSTS---------------------------------------TSQEG----- 783 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ILT+ +KGFGK T FR+ R GKG++ + SK+ G +V VN Sbjct: 784 ---------ELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN-SKL--AGDIVFARFVN 831 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 D++++++ G IR +++I RA KGV I + K E + +VE I+ E D Sbjct: 832 PQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKTD 887 >gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] Length = 824 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/871 (41%), Positives = 531/871 (60%), Gaps = 85/871 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + K ARI G+VMGK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ K A +L Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG + + +E Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+VI+++R SA VIL Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV RRT++ NKA RA Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 361 HILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMER------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS+ Q +AIL++RL RLTGL RD I NE L I + DIL++ R+L II+ E Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTE 454 Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 L + RRT ++ G +L +EDED I E++V+T+++ GY+KRV S +RAQRRGG Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ + DEDFV L STH ++LFF++ G VYK K + +P A+G +IN+L Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 ++ ERI I+ Y+ F T+ G V+R ++ F I +G IA+ L DE Sbjct: 575 IDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V E+ +++ T G V F + +R GR + GVRGI L GD V+ A+ Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAV--- 688 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I+ D+E +L + Sbjct: 689 ---------------------ITEDSE-----------------------------VLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E G+GKRT ++ I R GKGI+ +++ N G L + V+ + I++++DKG LI Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 R V + RAT GV + + +VV++ Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTM 787 Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600 + LG VKR ++ + R G + +R+ D + ++ V+ + G+ +K Sbjct: 601 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 E + R R A + + L G+ + ED V+ T++G +R Sbjct: 659 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 707 Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 K S++ R GK A + + T + E DI++ T G +RF ++ + Sbjct: 708 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITDKGVLIRFNVATVSQ-T 766 Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741 GR ++GVR + + +V++MA V Sbjct: 767 GRATLGVRLMKMENNAKVVTMATV 790 >gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101] Length = 846 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/889 (41%), Positives = 537/889 (60%), Gaps = 73/889 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143 YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RLQ LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 +D+ +TVDF N+DGS QEP V+ +R P +L+NG GIAVGMATNIP HNL E++DG + Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259 A+I+NP+++ LM +I GPDFPTG ILGR+GI+ Y TGRGS+ +RGV+ IE K Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DR+ +++TE+PYQ NKAA++E+IAELV +K++ IAD+RDESDR G R+VIEL+R A Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + RRT+YLL K Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +R H+L+GL IA+ NLD ++ +IR + + TAR +L+++ Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQ------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSE+Q AIL+++L RLT L D IR E L +I + DIL+ + R+L Sbjct: 402 -------FGLSEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVLA 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I +EL ++ D+PRRT I++ +ED D I E VV ++ GY+KR+P+S + A Sbjct: 455 LITEELGVLRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RG +G++G + E+ V + H S+L FS G VY +R+P S A+G ++ Sbjct: 515 SRGTRGKAGTRSQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 +L + + E+IT+++ E + +V T G ++R +LS F I +G IA+ L+ Sbjct: 575 QLLPIPREEQITSLLAVSE---FAEDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLE 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVIS 737 D + V + +L+ ++ G + F +S +R GR + GVR ++L GDQ++S Sbjct: 632 EGDALTWVRLAQPGDSLLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ AD E S+ DTEE+ EG Sbjct: 691 MDVLPVELADRVE--------SSSAAADEEDTEEV------PPSEG-------------- 722 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++L S G GKR FR+ R+G G+R + ++ LV + + ++++LVS Sbjct: 723 PWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKFRRDGDV--LVGLKVLGAGEELLLVS 780 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +KG ++R+ + + SRA GV + +R+ S +R+ E +V A Sbjct: 781 EKGVIVRMQADAVPQQSRAATGVRL------QRLDSGDRLSEVVLVPPA 823 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + S LG KRVP+ +R Q+R G G R RD D + L ++ +L S G Sbjct: 726 LVASASGLG--KRVPVDQFRLQKRAGMGLRCMKFRRDGDVLVGLKVLGAGEELLLVSEKG 783 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFP 637 + + + +P Q+R + + L+ G+R++ ++ P P Sbjct: 784 VIVRMQADAVP---QQSRAATGVRLQRLDSGDRLSEVVLVPPAP 824 >gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] Length = 875 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/887 (40%), Positives = 520/887 (58%), Gaps = 88/887 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V ++ EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M G ++ Y KCA Sbjct: 37 IEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRSYNKCA 96 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VM YHPHG++AIYDA+ R++Q WS+R LI+GQGNFGS D PAA RYTECR+ Sbjct: 97 RVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAAPRYTECRM 156 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 Q A L+ D+ +DTVDF PNYDG +P VL AR+PN+LVNG GIAVGMAT IP HNL Sbjct: 157 QPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMATQIPPHNL 216 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +GC ++DNP+ + L+++I+GPDFPTGA+I+GR+GI++AY TGRGSI +R Sbjct: 217 REVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIMGRSGIEDAYRTGRGSITMR 276 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R +VVTE+PYQVN A+ KIAELV+ ++ IADLRDE S R G R+ Sbjct: 277 AVVEVEEIQG-RTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDETSGRTGQRL 335 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P + ++ +V + EV+V Sbjct: 336 VIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPINAFVRHWVDHQVEVIV 395 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A ++ H+L GL A+ LDEV+ +IR SP E AR LM DL Sbjct: 396 RRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLM----------DL 445 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ RAIL+++L RL L R I +E + L I++ DI Sbjct: 446 LD----------------IDEVQARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDI 489 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +R II +EL ++ ++ RRT IV ++ ED I E++VVT++ GY KR Sbjct: 490 LATPARQRTIISEELAAIVEQYGDERRTEIVPSDAEVNMEDLIPDENVVVTITRGGYAKR 549 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + YR+QRRGGKG G +R +D V F TH +LFF+ G VY+ + W LP GS Sbjct: 550 IRVDAYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRARAWELPEGS 609 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + NI++ E+I ++ + +++ Y+V ATK+G V++ +L+++ Sbjct: 610 RDSKGQHVANIMAFGPDEKIAQVLTIKDYQAA---PYLVLATKNGLVKKTRLTEYDSPRS 666 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G IA+ L DE++ E + +DIL+ ++ GQ +RF S ++ GR + GV G+ Sbjct: 667 GGLIAVNLREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPMGRATSGVTGMRF 726 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D++++M R++ D E+ Sbjct: 727 RGDDELLAM------------------------RVVPSDAEDAE---------------- 746 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + V + G KRT+ +R+ R G G++ S ++ G LV V Sbjct: 747 ----------VFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKAS--DKGGDLVGALVVGQ 794 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 D++++V G ++R V+E+R+ R T GV K E +V+V R Sbjct: 795 QDEVMVVMSSGKVVRSRVDEVRMTGRDTSGVRFADPGKKEHIVAVAR 841 >gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] Length = 863 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 880 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/872 (40%), Positives = 523/872 (59%), Gaps = 84/872 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 EE K I+ EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RY Sbjct: 63 YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A ++ D+ K+TVDF PNYDG +EP VL +R+PN+LVNG GIAVGM TNI Sbjct: 123 TEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+ ++ NP LME + GPDFPT +++G+ GIK AY TG+G I++ Sbjct: 183 PPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I+ + +E+I+V+EIPY VNKA ++E+IA+L R+KRI I +RDE+ RQG R+ Sbjct: 243 RARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE ++ ASA VILN L++ T +Q+ F+ NMVA++ P+ +L IL+ ++ +EE++ Sbjct: 303 VIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIR 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+ + KA RAH+L GL IA+ ++DE+V I+R S + A+ M + Sbjct: 363 RRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYG-------- 414 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q +AIL++RL RLTGL R+ I NE L EI ++ Sbjct: 415 ------------------LSDKQAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEV 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549 L+S + II QELL ++ RRT I G + ++EDED I ++++T+S GY+K Sbjct: 457 LASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKGYIK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 RV S YR Q RGG+G G+ ++D D + + STH +L F+ G V++ K + +P Sbjct: 517 RVEDSEYRTQNRGGRGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEY 576 Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G ++N+L+L + E++ ++ P D+ + + Y F TK G V+R + ++ I Sbjct: 577 GRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNI 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++V + E++I+L + G V F +R GR + GVRGI Sbjct: 637 RNNGLIAINLRDDDELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSM-GRTATGVRGIR 695 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D V+ A +L D D Sbjct: 696 LDQDDYVVG-ASILGPDQD----------------------------------------- 713 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V+EKG+GKRT + ++ I +R GKG++ ++++ N G LV + V+ Sbjct: 714 -----------VLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKN--GPLVGLATVD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 ++ I+L++D+G +IR +I RAT+GV Sbjct: 761 LDEDIMLMTDEGVVIRFHSVDISQTGRATQGV 792 >gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] Length = 812 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/895 (40%), Positives = 523/895 (58%), Gaps = 91/895 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S SI DEM SY+ Y+++VI+GRAIPD+RDGLKPV R+ILFGM+++G+ N+ Y K A Sbjct: 5 IISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGK+HPHG+ AIYDAL RMAQ +S+R LI+GQGNFGS+D DPPAA RYTE R+ Sbjct: 65 RIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEARM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 Q+ A LL D+ K+TV PN+DGS EP VL A+ PN+L+NG GIAVGM TNIP HNL Sbjct: 125 QRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V+ A+IDNPD ++ LME ++GPDFPTG +I+GR GIK Y TGRG +V+RGV+ Sbjct: 185 SELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGVAE 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G +IV++EIPY V+KA ++++IA + + R + + ++RDESD++G RVVIELK Sbjct: 245 IEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374 RGA +V+LN LY++T LQ+ F +M+ ++ K P+ L I +AF+ R EVV RRT+ Sbjct: 304 RGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRRTE 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A +AH+L GL A +D VV IIR S N + A L + Sbjct: 364 YELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQE--------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 T+ ++ Q++AILE+RL +LT L D + E L +IKE +ILS Sbjct: 409 -----------TLEITPEQSQAILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILSDD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + IIK+EL ++ + RRT+I ++G D ED I +++VVTV+ GY+K PL Sbjct: 458 KNIYQIIKKELQELEAQYGDARRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKATPL 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q RGGKG GV D DFVT++ + + + +S G Y + L S + Sbjct: 518 EDYRKQGRGGKGIRGVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSRSS 577 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK L N + + E + ++ +E + N +++ T+ G ++R FI SG Sbjct: 578 RGKLLANYVKIEPDETVQAVLSVKREEVA--NKHLIITTRKGKIKRTPFEAFINSRTSGI 635 Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L+ D ++ T E + I+++T+ G +RFPIS IR GR + GV+ ++L Sbjct: 636 KAITLNEGDSVVDAGISTSEEETIIISTRKGMVIRFPISQIRPM-GRTAAGVKAMALRGD 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+S IVL D Y Sbjct: 695 DEVVSATIVLPVDERY-------------------------------------------- 710 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + T +E+G GKRT ++R +R+G G++ ++ + G +V V + D+ Sbjct: 711 -------LFTATERGVGKRTPLSEYRPQHRAGMGVK--NIYGLERTGYVVGSLVVTNEDE 761 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 II+++ G IR+P +IR R TKGV + D+ V S+ + +VD+AE Sbjct: 762 IIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASL-----AVVVDQAE 811 >gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + + +E+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 779 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/849 (41%), Positives = 517/849 (60%), Gaps = 85/849 (10%) Query: 54 RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113 RRIL+GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G Sbjct: 1 RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60 Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 GNFGS+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN Sbjct: 61 HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120 Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233 +LVNG GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPDFPTGA+++G Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMG 180 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 ++GI AY TG+GSIV+R + IE T RE+IVVTE PY VNK + E I LV+EKRI Sbjct: 181 KSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRI 240 Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 I +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ + Sbjct: 241 EGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILS 300 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L IL A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RIIR S A Sbjct: 301 LRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEA 360 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 + ELM + LSE Q++AIL++RL RLTGL RD I Sbjct: 361 QAELMSK--------------------------FKLSERQSQAILDMRLRRLTGLERDKI 394 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDC 532 ++E + L I + DIL+ R+ IIK EL VK + RRT ++ G +L +EDED Sbjct: 395 QSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDL 454 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I D+++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L STH +LFF Sbjct: 455 IEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFF 514 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + +P A+G ++N+L L++ E I T++ D S ++ Y+ F T Sbjct: 515 TNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTT 572 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +HG V+R + +F I ++G A+ L DE+++V + DI++ TK G VRF SA Sbjct: 573 RHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 632 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R + R + GV+G++L +GD V+ +++ D DE Sbjct: 633 VRGMS-RIATGVKGVNLREGDTVVGASLI----TDQDE---------------------- 665 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 +L ++EKG+GKRT + ++ R GKG++ + Sbjct: 666 ---------------------------VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKI 698 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 ++ N G L + V ++ +++++D G +IR + I RAT GV + +D ++V Sbjct: 699 TEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 756 Query: 893 SVERIRESE 901 + + +E Sbjct: 757 TFTTVAVAE 765 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 461 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 517 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 518 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 566 >gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] Length = 835 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/891 (38%), Positives = 540/891 (60%), Gaps = 85/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+ M ++GV + Y K A Sbjct: 22 IQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKAA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+++IY+A+ RMAQD+S R L++G GNFGS+DGD AA RYTE ++ Sbjct: 82 RVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVKM 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A L+ ++ KDT+DF NYDG+ +EP+VL PN+L+NG GIAVGMAT IPTHNL Sbjct: 142 AKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG + I+N DI +D LM+ I+GPDFPTG +LG +K+AY TG+G+++++ SH Sbjct: 202 GEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQSLKSAYHTGQGAVILKAKSH 261 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 + K G + I+VTEIPYQV K ++EKIA LV+ K + +I DLRDES R+G ++VIELK Sbjct: 262 VSKERG-KTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDLRDESSRKGMKIVIELK 320 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A++ +ILN+LY+++ L+ F +NMVAL G P+ +L IL+AF FR EV+ R+ + Sbjct: 321 RDANSKIILNKLYKHSQLRISFGINMVALVGKTPQLVSLKQILEAFFNFRIEVINRQKSF 380 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H++ L + +++ +++I+ S + + A+ +LMQR +N Sbjct: 381 ELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLMQR-YN------------ 427 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 E+Q++AILE+ L RL + E +L EI EC I+ S+ Sbjct: 428 -------------FDEIQSKAILEMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQK 474 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + I+++ELL +K + R+T + + L+ EDED I + +++T+++ GY+K + + Sbjct: 475 KKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLIEEKPIIITITNKGYIKSMDID 534 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q+RGG+G SG+ + +EDF+ L I STH LFF++ G VY+ K + +P+G Q++ Sbjct: 535 TYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSK 594 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G L+N L + E +T+ + S + Y+ FATK G V++ L ++ I++ G I Sbjct: 595 GSHLVNFLPFEKDEFLTSFTSVKNFDQSQD--YLFFATKKGIVKKTPLKEYSHISKRGLI 652 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A++L DE+L+V T +I+L + G + F + I+ + RNS+GV G+ L + Sbjct: 653 AIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKIKSIS-RNSMGVIGMRLGSDEF 711 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ A+ DT+ Sbjct: 712 LVGAALF--------------------------DTDS----------------------- 722 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 KEQ IL ++E GFGK T+ +RI RSGKG + V+ ++ G L+ + V D +I Sbjct: 723 -KEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVN--DQKGRLITLQVVLPTDDLI 779 Query: 855 LVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + SDKG ++RV +++I + ++AT+G I + VSV +++ E++D Sbjct: 780 VSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAVSVAVVKK-EVLD 829 >gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] Length = 812 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/884 (40%), Positives = 526/884 (59%), Gaps = 91/884 (10%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V+I EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF ++ +N+ KCARI Sbjct: 4 NVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCARI 63 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++A+Y+AL R+AQD+S+R L +GQGNFGS+DGD AA RYTE R+ + Sbjct: 64 VGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMSR 123 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A L+D+ K+TVDFRPNYD + EPVVL + PN+L+NG GIAVGMATNIP HNL E Sbjct: 124 LASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLSE 183 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 + D + +ID P+ ++ LM++++GPDFPTG + G+ +AY TGRG++ +RG IE Sbjct: 184 LSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAGQGLYDAYTTGRGTVKVRGKVEIE 243 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + +++ EIP+ +NK++++EKIA L+ +++I ++DLRDESDR+G RVVIELKRG Sbjct: 244 DRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKRG 303 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 ++++N LY+YT L++ F +NM+A+ +P L L F+ R EVVVRRTK+ L Sbjct: 304 TMPEIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALAYFLDHRREVVVRRTKFEL 363 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA RAH+L GL A+ ++DEVV +IR S P A+ LMQR Sbjct: 364 RKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQR----------------- 406 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSEVQ +AIL++RL RLTGL R I EL L +I IL S L Sbjct: 407 ---------FELSEVQAQAILDMRLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVL 457 Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 G+I+ E+ +K TPRRT ++ E L +++ ED + +D+V+T+S GY+KR L +Y Sbjct: 458 WGVIRDEVEYIKQTYSTPRRTEVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIY 517 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + QRRGGKG +GV ++DFV + + H +L F++ G +++ KV ++P GS A+G Sbjct: 518 QQQRRGGKGVAGVHTGEDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGV 577 Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + N++ + + E + TI+ F ED+S +FAT+ G V+R+ + + + + G Sbjct: 578 HIANLVPMEKDEWVNTILTVREFAEDKS------FLFATRRGMVKRSSAALYARSRKGGL 631 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE++ V T ++ ++L T G +RF +R GR + GV+GI+L GD Sbjct: 632 IAVGLREDDELIMVREITDDDFVVLATADGIAIRFSCRDVRNM-GRGATGVKGIALRHGD 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V++ C L Sbjct: 691 TVVA----------------------------------------------------CLVL 698 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 K I+T+S GFGKRT+ +R+ +R GKGI V+ + G ++ V D++ + Sbjct: 699 KEDSPAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTP--KTGPVIGAKSVLDDEAL 756 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L++ +IR+ V+EIR RAT GV + RVV + + Sbjct: 757 VLLTSTNKIIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTV 800 Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 8/113 (7%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L + ++T+S +G+ KRTS ++ R GKG+ + + V F N Sbjct: 491 EDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTGEDD----FVQEFITTTN 546 Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 Q +L+ ++KG + ++ V+++ SR KGV I KDE V ++ +RE Sbjct: 547 HQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNTILTVRE 599 >gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221] gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221] gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3] Length = 862 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] Length = 823 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/886 (41%), Positives = 539/886 (60%), Gaps = 85/886 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I SV++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEAKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ ++DNPD+ LME++ GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSII 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG I++ S +E+I++TE+PY VNKA ++E+I+EL R+KRI I LRDES R+G R Sbjct: 243 VRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VILN +Y+ T+LQS F NM+A+ P+ +L IL+ ++ ++EV+ Sbjct: 303 IVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQKEVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + KA RAH+L GL IA+ ++DE++ IIR S + + A+ L++R Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIER--------- 413 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S+ Q +AIL++RL RLTGL R+ I NE L I + D Sbjct: 414 -----------------FDFSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R++ IIK+ELL + RRT ++ G +L +EDED I E++V+T+++ GY+ Sbjct: 457 ILARPERVVQIIKEELLDLGKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV + +RAQRRGG+G G+ + DEDFV L STH ++LFF++ G VYK K + +P Sbjct: 517 KRVANTEFRAQRRGGRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ ERI I+ E++ Y+ F TK G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGIDSSERIQAIIAVKNHEAAEQ--YLFFTTKLGVVKRTDVQAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L +DE+++V + I++ T G V F S +R GR + GVRGI Sbjct: 635 RSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDM-GRAAAGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ AI+ T E Sbjct: 694 LREGDYVVGTAIL---------------------------TPE----------------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E ++T + G +S Y + R GKGI+ +++ N G L + V+ Sbjct: 710 -------SEVLVITENGYGKRTASSEYP--VKGRGGKGIKTANITPKN--GPLAGLTTVS 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + I++++DKG +IR V + RAT GV + + +VV++ Sbjct: 759 GEEDILVITDKGVIIRFNVATVSQTGRATLGVRLMKMENEAKVVTM 804 Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 21/212 (9%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E + + LG VKR + + R G + ++++D + ++ +++ + Sbjct: 611 EQYLFFTTKLGVVKRTDVQAFSNIR--SNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHG 668 Query: 596 GF--VYKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFAT 652 G+ + E V R R A + + L +G+ + T + PE E V+ T Sbjct: 669 GYSVTFAESVVR-----DMGRAAAGVRGIRLREGDYVVGTAILTPESE-------VLVIT 716 Query: 653 KHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 ++G +R S++ R GK A + + T + E DIL+ T G +RF Sbjct: 717 ENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAGLTTVSGEEDILVITDKGVIIRFN 776 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 ++ + GR ++GVR + + +V++MA V Sbjct: 777 VATVSQ-TGRATLGVRLMKMENEAKVVTMATV 807 >gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni] gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902] gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 863 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 863 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1] gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327] Length = 863 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + + +E+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] Length = 846 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/882 (41%), Positives = 527/882 (59%), Gaps = 91/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + Y K A Sbjct: 8 LIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAYRKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G V+G+YHPHG+A++YDAL RMAQ +SLR L++G GNFGS+DGD PAA RYTE R+ Sbjct: 68 TTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYTEARM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + +L D+ K+TVDF+PN+D +EP+V+ +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG +IDNPD L+ L I+GPDFPTG +I+GR GI+ AY GR I +R + Sbjct: 188 GEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIMGRAGIREAYVKGRSRITLRAKAT 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R +I+VTEIPY V+KA ++E IAEL +EKRI I+DLRDESDR+G R+V+ELK Sbjct: 248 IEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIVVELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LN+LY Y+ LQ V M+AL P L IL ++ F+E+VV RRT+Y Sbjct: 308 RDANPQVVLNRLYTYSQLQETVPVIMLALVNGHPRVLPLRDILTEYIHFQEQVVTRRTQY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ +DEV+RI+R S + + LM+R Sbjct: 368 DLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMER--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L ++Q +AI+++RL +LT L R+ I EL +L +I IL+ Sbjct: 413 -----------FELDDIQAQAIVQMRLGQLTNLEREKIEEELAALETKIANFKAILADEQ 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R+L I+K+E L VK + RRTRI V G +D+ED I ED+V+T+++ GY+KR+P Sbjct: 462 RILQIVKEEALEVKAKFGDERRTRIENVSGEVDVED--LIPVEDVVLTLTNFGYIKRLPA 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Y +QRRGG+G +G+ R+ED +LF+ STH VLFF+S G Y+ K + +P GS + Sbjct: 520 AAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTS 579 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G + NIL + Q E IT ++ P+ E + Y+V TK G V+R L ++ ++G Sbjct: 580 KGMNVANILPVAQDENITAMIKVPKFEE---DCYLVMVTKKGIVKRTSLKEYDTARKAGV 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 I + L+ DE++ +LLT SA + RN V +R Sbjct: 637 IGILLEEDDELVG---------VLLTDG---------SAHILVGTRNGVAIR-------- 670 Query: 734 QVISMAIVLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 + DA R + +K +S L GD ++ N + Sbjct: 671 -------FVETDARPMGRAAHGVKAIS----LEGGDYVVGVTVPNGAGS----------- 708 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +L ++E G+GKR DFR+ NR GKG+ + ++++ + G + + V ++D Sbjct: 709 -------LLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINE--KTGPVAGLRVVEESDD 759 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + +S G +IRVPV EI + SR +GV + ++ +VV+V Sbjct: 760 ALFISSDGVVIRVPVAEIPVYSRYAQGVRVMRVGEETKVVTV 801 Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 113/269 (42%), Gaps = 23/269 (8%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQC 705 V+ T G ++R + + R G+ L R+E ++ E C+ + +L T G+C Sbjct: 505 VLTLTNFGYIKRLPAAAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRC 564 Query: 706 VRFPISAI----RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 R + R G N + + +A+ + + +M V + D CY+ M + Sbjct: 565 YRLKGYEVPEGSRTSKGMNVANI--LPVAQDENITAMIKVPKFEED-----CYLV-MVTK 616 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTVSEKGFGKRTSSYDF 817 + ++ + + + V G + EE + + + IL + G R D Sbjct: 617 KGIVKRTSLKEYDTARKAGVIGILLEEDDELVGVLLTDGSAHILVGTRNGVAIRFVETDA 676 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R R+ G++A + + + V V N ++L+++ G RVP + R+ +R Sbjct: 677 RPMGRAAHGVKAISLEGGDYV---VGVTVPNGAGSLLLITENGYGKRVPFEDFRVQNRGG 733 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEA 906 KG+ ++ +E+ V +R E D+A Sbjct: 734 KGLTSYNI--NEKTGPVAGLRVVEESDDA 760 >gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 862 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ I++ E+PYQ NKA ++E+IAELV+E++I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum] gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG'] Length = 816 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/878 (41%), Positives = 522/878 (59%), Gaps = 86/878 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV Y K AR Sbjct: 8 TVVPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG+ A+YD R+ Q ++LR LI+GQGNFGSVDGD PAA RYTE RL+ Sbjct: 68 IVGDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLE 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + ++ +L ++TV+F PNYD S QEP VL AR P +L+NG GIAVGMATNIP HN+ Sbjct: 128 ALSEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNIT 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E++DG +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A TGRGSIV+RGV+ I Sbjct: 188 EIIDGLLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVAEI 247 Query: 257 EK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ T DR I++ EIPYQVNKA ++E+IAELVRE + IAD+RDESDR G RVVI+LK Sbjct: 248 EESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LN+LY T LQ+ F N VAL +P +L L F++FR++VV RRT + Sbjct: 308 RDANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALVHFLSFRQDVVTRRTLF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+R H+L GL A+ +D+++ +IR S +P+ AR L+++ Sbjct: 368 RLRKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE+Q RAIL++RL RLT L RD I E + + I+ DIL SRS Sbjct: 413 -----------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRLLIRGLEDILGSRS 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL+ +I++E ++++ RRTRIV ++ E I + +T+++ GY+KRV Sbjct: 462 RLMAVIREEFTALRENYGDARRTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDA 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y QRRGGKGRSGV ++++D V + H ++LFF+ +G VY+ K +P ARG Sbjct: 522 YPTQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K + L L E++T ++ E + +VF T +G ++R LS + I +SG IA Sbjct: 582 KPVRGFLPLAPEEKVTRMLNVASFEGDRS---LVFVTVNGIIKRTALSAYSSIRQSGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L D + V ++ +L+ T+ G + FPI + GR + GVR I L + D+V Sbjct: 639 LTLREGDRLAQVLVADADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREDDRV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 IV D Sbjct: 698 ADAEIVTETDP------------------------------------------------- 708 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + V+EKG+GKR FR +R G G++ + ++ +IGA+V++ D D + + Sbjct: 709 ----VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGDTDDLTI 762 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ KG RV NE+R R+ +GV++ A D+ +VS Sbjct: 763 ITSKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVS 800 >gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] Length = 812 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/887 (39%), Positives = 535/887 (60%), Gaps = 90/887 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I S + +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ +K + Sbjct: 4 QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K AR+ G+V+GKYHPHG+ A+Y++ RMAQD+S R LL++G GNFGSVDGD AA RYT Sbjct: 64 RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K + +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG GIAVGMATNIP Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +HNLGEVVDG A+IDNP+I +D LM ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+ S + +IVVTEIPYQVNKA ++E IAEL ++K I I LRDESDR G R+V Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN L+++T L+ F M++L P +L ++ ++ +EEV+ R Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S A+ LM + Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+ AIL++RL RLTGL R+ I ++ + I D+L Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S R++++ ++K EL+ +K++ RRT+ + + D + E M +TV+ Y+KR+ Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R QR+GG+G SG+ M+D+D+V + STH +LFF+ G VY + V P+ S Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577 Query: 612 QARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG ALIN + +L + ER+T ++ D S+ Y++ T++G V++ + ++ IN+ Sbjct: 578 TARGSALINFIPTLEKDERVTEML--DPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINK 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA++L+ D ++ V + D++L T+ G +RF I+ + + GR + GV GI L Sbjct: 636 NGIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSVGRVAAGVHGIKL 695 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + GD+V+ I DE+ + Sbjct: 696 SAGDEVVGAVIA-------DEKDIF----------------------------------- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 T+S G KR + + R+GKG+R + + E+ ALVA +D Sbjct: 714 ------------TISADGNAKRNKESAYHVQGRNGKGVR--NFKRGFEVVALVA---ADD 756 Query: 850 NDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVE 895 ND+++ VS+ G I+ ++I ++A +GV++ + +R+ S++ Sbjct: 757 NDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASID 803 >gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] Length = 1003 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/894 (40%), Positives = 525/894 (58%), Gaps = 49/894 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + K VKCA Sbjct: 106 MVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCA 165 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +ISG+ G YHPHG + IY L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R+ Sbjct: 166 KISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARM 225 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +LDDL DTVD+ P YD + EP VL +++PN+L+NG GGIAVGMAT+IP HN Sbjct: 226 GAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNP 285 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D + +I+ PD +D L EII GPDFPTG +I GR G++ Y TGR ++V+R Sbjct: 286 TEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARCQ 345 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G+R +IVVTEIPYQ + ++EKIA LV RI I+ +RDESD ++ R+V+EL Sbjct: 346 IEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVEL 405 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG DVILNQLY+++ LQ FS+ +AL KP TL +L F+ R V+ RRT+ Sbjct: 406 KRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRTQ 465 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-PNPETARR--------ELMQRSWNAS 425 +LL +AR R H + GL +A+AN+DE+++ IR S PE R +MQR+ Sbjct: 466 FLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDE 525 Query: 426 DIKDL-IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 K ++ + SYT L+ VQT IL +RL +L L ++ + E L EI Sbjct: 526 GFKQFQLERGEADSYT--------LTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEI 577 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVS 543 + +DIL S SR+ GIIK++L +K RRT I E L +++ ED I E MVV++S Sbjct: 578 IDYIDILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSIS 637 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KR P SVY QRRGGKG G +ED + LF+ STH +LFF++ G V +KV Sbjct: 638 HRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKV 697 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P + A+G+A++N+L + +GE+I + + + +V TK G V++ L Sbjct: 698 YDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHT--IVMTTKSGLVKKTPLE 755 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + R G IA+KL DE++ ++I++ T G +RF S R GRN+ G Sbjct: 756 QYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSG 814 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+GISL D V+ M +V +A + K+ +R + +++ D S EG Sbjct: 815 VKGISLVGDDAVVGM-VVTDPEATL---LTVCKNGYGKRTPFGPNLADVSETDADESSEG 870 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E + S +R R GKG+R SK N G ++ Sbjct: 871 GDDEAATA--------------------SGSARYRTQKRGGKGLRDIKTSKRN--GKVIG 908 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + VND+D++ L++ KG L R+ +I + R T+GV I + + + +++V R+ Sbjct: 909 IARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRV 962 >gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] Length = 824 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/871 (41%), Positives = 531/871 (60%), Gaps = 85/871 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + K ARI G+VMGK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA RYTE R+ K A +L Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +++NP++ LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG + + +E Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+VTE+PY VNKA ++E+I+EL R+KRI I DLRDES R+G R+VI+++R SA VIL Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T+LQS F NM+A+ P+ +L IL+ ++ ++EVV RRT++ NKA RA Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ ++DE++ +IR S + + A+ +M+R Sbjct: 361 HILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER------------------------ 396 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS+ Q +AIL++RL RLTGL RD I +E L I + DIL++ R+L II+ E Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTE 454 Query: 505 LLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 L + RRT ++ G +L +EDED I E++V+T+++ GY+KRV S +RAQRRGG Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 +G G+ + DEDFV L STH ++LFF++ G VYK K + +P A+G +IN+L Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 ++ ERI I+ Y+ F T+ G V+R ++ F I +G IA+ L DE Sbjct: 575 IDSSERIEAII--SASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +++V E+ +++ T G V F + +R GR + GVRGI L GD V+ A+ Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAV--- 688 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 I+ D+E +L + Sbjct: 689 ---------------------ITEDSE-----------------------------VLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 +E G+GKRT ++ I R GKGI+ +++ N G L + V+ + I++++DKG LI Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 R V + RAT GV + + +VV++ Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTM 787 Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 19/204 (9%) Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF--VYK 600 + LG VKR ++ + R G + +R+ D + ++ V+ + G+ +K Sbjct: 601 TRLGVVKRTSVTAFSNIR--ANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFK 658 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 E + R R A + + L G+ + ED V+ T++G +R Sbjct: 659 EALVR-----DMGRTAAGVRGIRLRDGDYVVGAAVITEDSE------VLVITENGYGKRT 707 Query: 661 KLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 K S++ R GK A + + T + E DI++ T G +RF ++ + Sbjct: 708 KGSEYPIKGRGGKGIKTANITAKNGPLAGLTTVSGEEDIMVITDKGVLIRFNVATVSQ-T 766 Query: 718 GRNSVGVRGISLAKGDQVISMAIV 741 GR ++GVR + + +V++MA V Sbjct: 767 GRATLGVRLMKMENNAKVVTMATV 790 >gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5] Length = 851 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/894 (37%), Positives = 541/894 (60%), Gaps = 87/894 (9%) Query: 8 SDEEEEKG----ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQ 62 ++EE+ G I ++I ++M+++Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + Sbjct: 3 TEEEKNAGLVGRIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAE 62 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + +K K ARI G+V+GK+HPHG+ ++YDA+ R+AQDWS+R L++GQGNFGS+DG Sbjct: 63 LNLYSDKPTRKSARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDG 122 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE R++K ++ D+ K+TVD+ N+D + EP VL + P ++VNG GI Sbjct: 123 DSPAAMRYTEARMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGI 182 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HNL EVVD C A IDNP+I + +++ I+GPDFPTG +I G G++ A Sbjct: 183 AVGMATNMAPHNLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIYGYEGVREAML 242 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG +++R + IE T RE IV+TEIPY +NKA M++KIA+++ EK+I I+ + DE Sbjct: 243 TGRGRVMMRAKTDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDE 302 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R++I LK A A V+LN L++ T LQ+ F+VN +AL +P+ + ++K FV Sbjct: 303 SDRNGLRIIIILKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNGRPQMLPMRDLVKHFV 362 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R +VVVRR ++ L KA +R H++ GL IA N+DE+V IIR S P+ A++ +++R Sbjct: 363 DHRHDVVVRRARFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIER-- 420 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LS++Q AI+E+RL LTGL + E + L Sbjct: 421 ------------------------FNLSDIQASAIIEMRLRALTGLEYGKLIAERDELTK 456 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I ++L + + IIK ELL +K++ RR+ IV + ED +DMV+T+ Sbjct: 457 QIAYLKEVLENVGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADDDMVITI 516 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH+GY+KR PL+ YR Q RGG G G RDEDF+ +++ S H ++LFF+ G + K Sbjct: 517 SHMGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLK 576 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRN 660 V+ +P G+ ++G+A+ N++ + +++ + DE NN +++ TK G +++ Sbjct: 577 VYEIPEGARSSKGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKT 636 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 KL + + ++G A+ + D+++ + + + ++++ + G+ +RF S +R GR Sbjct: 637 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVRPI-GRV 695 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 GVRGIS+ + D+V+ M IC ++ DS Sbjct: 696 GAGVRGISIEESDEVVGM-------------IC---------------------VEPDS- 720 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +Q +L +SE G+GKRT ++RI+NR GKG++ +V++ + G Sbjct: 721 ----------------KQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTE--KTGK 762 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L+++ V D++ +++++ G IR V++IR+A RAT+GV I + + + + SV Sbjct: 763 LISIQAVTDDNDLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREGDAIASV 816 >gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47] Length = 979 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/894 (40%), Positives = 525/894 (58%), Gaps = 49/894 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + K VKCA Sbjct: 82 MVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKCA 141 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +ISG+ G YHPHG + IY L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R+ Sbjct: 142 KISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEARM 201 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +LDDL DTVD+ P YD + EP VL +++PN+L+NG GGIAVGMAT+IP HN Sbjct: 202 GAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHNP 261 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV D + +I+ PD +D L EII GPDFPTG +I GR G++ Y TGR ++V+R Sbjct: 262 TEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARCQ 321 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G+R +IVVTEIPYQ + ++EKIA LV RI I+ +RDESD ++ R+V+EL Sbjct: 322 IEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVEL 381 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG DVILNQLY+++ LQ FS+ +AL KP TL +L F+ R V+ RRT+ Sbjct: 382 KRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRTQ 441 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-PNPETARR--------ELMQRSWNAS 425 +LL +AR R H + GL +A+AN+DE+++ IR S PE R +MQR+ Sbjct: 442 FLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGDE 501 Query: 426 DIKDL-IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 K ++ + SYT L+ VQT IL +RL +L L ++ + E L EI Sbjct: 502 GFKQFQLERGEADSYT--------LTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEI 553 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVS 543 + +DIL S SR+ GIIK++L +K RRT I E L +++ ED I E MVV++S Sbjct: 554 IDYIDILGSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSIS 613 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 H GY+KR P SVY QRRGGKG G +ED + LF+ STH +LFF++ G V +KV Sbjct: 614 HRGYIKRTPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKV 673 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P + A+G+A++N+L + +GE+I + + + +V TK G V++ L Sbjct: 674 YDIPQLARDAKGRAIVNLLQMEEGEQIAECLAVRDFNQPGHT--IVMTTKSGLVKKTPLE 731 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + + R G IA+KL DE++ ++I++ T G +RF S R GRN+ G Sbjct: 732 QYSRPKRGGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSG 790 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+GISL D V+ M +V +A + K+ +R + +++ D S EG Sbjct: 791 VKGISLVGDDAVVGM-VVTDPEATL---LTVCKNGYGKRTPFGPNLADVSETDADESSEG 846 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 E + S +R R GKG+R SK N G ++ Sbjct: 847 GDDEAATA--------------------SGSARYRTQKRGGKGLRDIKTSKRN--GKVIG 884 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + VND+D++ L++ KG L R+ +I + R T+GV I + + + +++V R+ Sbjct: 885 IARVNDDDELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRV 938 >gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 863 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+E++I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus H10] Length = 809 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/871 (40%), Positives = 527/871 (60%), Gaps = 86/871 (9%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K+Y K ARI GEVMGK Sbjct: 2 MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PAA RYTE R+ K A +L Sbjct: 62 FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+T+D++ NYD + EPVVL AR PN+L+NG GIAVGM TNIP HNL EV+ G Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 ++ NPD LM++I GPDFPTG +I+GR GI AY +G+G+IV+R ++IE RE Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGRE 241 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 +I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ G R+ I+++R ASA V+L Sbjct: 242 RIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVVL 301 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N L++ T +Q+ F +NMVA+ P TL +L+ ++ +++VV RRTK+ L KA RA Sbjct: 302 NNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEARA 361 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 362 HILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR------------------------ 397 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 L + Q++AIL++RL RLTGL RD + E L +I + DIL+ R+ II E Sbjct: 398 --FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDE 455 Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563 LL ++ RRT I ++ +EDED I ++++++TV+H GY+KR+P+ ++ Q RGG Sbjct: 456 LLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGG 515 Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 KG G+ ++D DF+ L STH +LFF++ G VY K + +P A+G ++N+L Sbjct: 516 KGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQ 575 Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683 L +GE++ T++ PE ++ Y+ F TK G V+R +S+F I SG IA+ L DE Sbjct: 576 LEKGEKVQTVINVPE---GADDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 632 Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + +V T + +IL+ T LG V F + +R GR + GVRGI+L D V+ ++ Sbjct: 633 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGVRGINLRDHDYVVGSGVL-- 689 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803 DAD D+ +L + Sbjct: 690 -DAD-DQ-------------------------------------------------VLVI 698 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 SEKG+GK T + ++ + R GKGI+ ++++ N G L V ++ I++++ G +I Sbjct: 699 SEKGYGKHTPAAEYSVKGRGGKGIKTANITEKN--GPLAGVIVISKGKDIMVITTDGIMI 756 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 R ++ R+T GV + D +V S+ Sbjct: 757 RFKTKDVSQTGRSTMGVRLIKVNDDSQVASL 787 Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust. Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 33/284 (11%) Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694 EDE ++ H G ++R + +F NR GK M + D I + + + Sbjct: 480 EDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHD 539 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751 +L T G+ I + GR + G V + L KG++V ++ I + AD D Sbjct: 540 MLLFFTNAGKVYSRKAYEIPEY-GRMAKGLPVVNLLQLEKGEKVQTV-INVPEGAD-DNY 596 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808 + ++ M +R E ++++N + + +E L +Q IL + G+ Sbjct: 597 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 653 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 + D R R+ G+R ++ + + V ++ +DQ++++S+KG P Sbjct: 654 AVTFNENDVRAMGRTAAGVRGINLRDHDYV---VGSGVLDADDQVLVISEKGYGKHTPAA 710 Query: 869 EIRIASRATK---------------GVVIFSTAKDERVVSVERI 897 E + R K GV++ S KD V++ + I Sbjct: 711 EYSVKGRGGKGIKTANITEKNGPLAGVIVISKGKDIMVITTDGI 754 >gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97] gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 862 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D+ L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ L+ DE+++ Sbjct: 627 LSEYQNIRSIGVRAINLNENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP+ +R GR S GV I + + + A+V+ D Sbjct: 687 EESASTQGKMLFAVTKKGMCIKFPLVKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL+VS Sbjct: 746 ---------------------------------------------------EQEILSVSA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + + +E+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|315452542|ref|YP_004072812.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179] gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179] Length = 806 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/884 (40%), Positives = 539/884 (60%), Gaps = 97/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 5 IEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPYKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 65 RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEARM 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + LL DL KDT+DF NYD + +EP +L +R PN+L+NG GIAVGMAT+IP H Sbjct: 125 AAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIPPHRP 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D + V++NP +L L+EI++GPDFPTG V+ G+ GI AY TGRG I +R S Sbjct: 185 DEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGVVYGKAGILEAYTTGRGRIKVRAKSR 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +EK + +RE I++ EIPYQVNKA ++E+I+ L ++K + IA++RDESDR+G RVVIELK Sbjct: 245 VEKHN-NRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRVVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ++++LN LY+ ++++ FS+ ++A+ +P F L+ +LK F+ R+ VV+RRT + Sbjct: 304 KDAYSEIVLNHLYKSSNMEITFSIILLAIYNKEPRVFNLLELLKLFLVHRKSVVIRRTIH 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL +A+ + + V+ +I+ S + + A+ LMQ Sbjct: 364 ELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQ---------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T +LSE Q++AIL++RL RLTGL ++ I+ E L +I +IL + Sbjct: 408 ----------THHLSEEQSKAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNAD 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +IK+ELL VK++ TPR+T+I E + ED I EDMVVT+SH GYVKRVPL V Sbjct: 458 KLNALIKEELLEVKEKFSTPRKTQIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLKV 517 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y QRRGGKG++ ++DF+ FI +TH ++LF ++ G ++ KV+++P A G Sbjct: 518 YEQQRRGGKGKNSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAIG 577 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +AL+N++ L GE I +P F D+S +VF TK+G V+R +LS F +I R G Sbjct: 578 RALVNLIDLQPGESIKATIPTKDFDADKS------LVFFTKNGIVKRTELSAFGRI-RGG 630 Query: 673 KIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 A+ L+ D +++ +++ QE + + + G C+RF + ++R GR + GVRG+ L Sbjct: 631 VRAIVLEEDDALVTAKIIDSSVQE--LFMASSKGMCIRFSVESVREM-GRVARGVRGMRL 687 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD VI G +S + Sbjct: 688 REGDFVIGA--------------------------------------------GGVSSD- 702 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EQ +L+VS KG GK+T + +R R G G+ ++ + G LV + V++ Sbjct: 703 -------EQKLLSVSSKGIGKQTLAGAYRAQGRGGLGVIGVKITP--KTGHLVGIVSVDE 753 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++L++ G +IR+P+ IR R GV + DE V + Sbjct: 754 GQDLMLLTKSGKMIRMPMETIRETGRNASGVKLVQMESDEVVYA 797 >gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] Length = 854 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/890 (40%), Positives = 533/890 (59%), Gaps = 91/890 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + + Y K A G Sbjct: 20 VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + A Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG GIAVGMATNIP HNL EV+D Sbjct: 140 EMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 GCVA I++PDIDL LME I+GPDFPT +I+GR+GI+ AYATGRG I +RG + IE+ Sbjct: 200 GCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEEKK 259 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R QI+VTEIPY VNKA ++E IA+LV+EKRI I+DL DE++R+G R+VI++++ A+ Sbjct: 260 NGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDANP 319 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 V+LNQLY+YT LQ V M+A++ P+ TL +++ +V F++EVV RRT+Y L KA Sbjct: 320 QVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKA 379 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 R+RAH+L GL A +DE++ IR + + + + D Sbjct: 380 RERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDD-------------- 425 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 Q AI++L+L RL GL I EL SL +I++ +IL+ +R+L I Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEI 474 Query: 501 IKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +K ELL +K RRT I V G +D+ ED I E V T++ GY+KR + Y+A Sbjct: 475 VKSELLEMKRRFGDDRRTEIETVTGEVDI--EDLIAEEQCVYTLTEAGYIKRQLKATYQA 532 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGG+G SG+ ++ED V ++F+ STH VLF + G +++ K + + GS ++G + Sbjct: 533 QKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNI 592 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +N+L L +GE++T ++ +D ++ +V TK G ++R L + I +SG I + L Sbjct: 593 VNLLQLAEGEKVTNMLCQSKDTANEGG-FVTMVTKQGLIKRTPLEQYANIRKSGLIGIAL 651 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 + D + + + +++ T+ GQ +RF R GR+ GVR I LA+GD+V+ + Sbjct: 652 NEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRSGHGVRAIKLAEGDEVVGV 710 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I C+E Sbjct: 711 CI-------------------------------------------------CRE----NA 717 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 ILTV+E G G+R+ +RI+ R GKGIR D SK + AV V+D D ++L S Sbjct: 718 TILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----DKVAAVKIVDDVDDVLLSSQ 773 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +G +IR+ NEI + SR GV + ++++V+ + R DEA++ Sbjct: 774 EGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQT 820 >gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 862 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 542/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++D+ D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] Length = 885 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/896 (39%), Positives = 534/896 (59%), Gaps = 56/896 (6%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 V+I D M +YL Y+++V +GRAIPD+RDGLKPV+RRIL+ M Q+G+ + VKCAR+ Sbjct: 10 QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 GEVMGKYHPHG+AAIYDAL R+AQD+S+R LIEGQGNFG++DGDP AA RYTECR+++ Sbjct: 70 VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL D+ KDTV+ PN+D S EP VL ARYP +LVNG GI VGMAT+IP HNLGE Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D + ++DNP +D LME + GPDFPTGA+I GR ++ Y TG GSI IR + I Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSIKIRAKADII 249 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316 + G REQI+V+EIPY + K +++KIAELV +KRI I+ LRDES R G R+VIE+KR Sbjct: 250 EKDG-REQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIKR 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 GA V+LNQL+ +T L++ M+ ++ +P L+ +L+A++ R EV+VRRT + Sbjct: 309 GAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRLEVIVRRTLFE 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA+ RAH+L GL A+AN+++VV+IIR S + + A L+ R Sbjct: 369 LKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR---------------- 412 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 +++Q AIL++RL +LTGL + + E L I+ + +SR Sbjct: 413 ----------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREM 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 LG+IK EL ++++ PRRT I D+ D I R V+TVS+ GY+KRVP Y Sbjct: 463 QLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTY 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R Q RGGKG G+ ++ED V LF +H + FF+ GF+Y V+ +P GS +G+ Sbjct: 523 RTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGR 582 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 A+ N++ + GE+I ++ ++E N Y+V A++ G +++++L+ F + R G A+ Sbjct: 583 AITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRAL 642 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLA-KGDQ 734 ++ D+++ N+ILL+TK G F ++ GR + GV G+ +GD Sbjct: 643 VIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDS 702 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S+ I+ E + + + + + + V G+ E Sbjct: 703 VVSLEII-------REHLYEEPAEDEEGEEVEVEVDVDEEM----PVVGSGPE------- 744 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L V++ G GKR+ +R + R KG+ K+ E +++V + + D+I+ Sbjct: 745 -----VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNI---KLREGETVLSVVQITEEDEIL 796 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 L +++G L+R+P +EIR RA+ GV I + +R+ V ++ E ++ + E Sbjct: 797 LTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEE 852 >gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] Length = 814 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/864 (40%), Positives = 517/864 (59%), Gaps = 83/864 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++ +N+ Y K AR+ Sbjct: 5 INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YDAL RMAQ++S+R +++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TV FRPNYD S EP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG + +DNP D++ L+ +++GPDFPTGA I G G+ AY TGRGSI IRG + IE+ Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGKGLIEAYTTGRGSIKIRGKAEIEE 244 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 D + +V+ EIPY +NK++++EKIA L+ E RI ++DLRDESDR+G R+V++LK+G Sbjct: 245 RKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKGV 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L++ F +NM+ + +P + +L+ F++ R EVV+RRT + L Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFDLR 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMER------------------ 406 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLT L R + +E N L I+ IL + L Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLR 458 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G+I+ E+ +KD+ TPR+T I+E L + D I ED+V+T+S GY+KR + Y+ Sbjct: 459 GVIRDEITEIKDKYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQ 518 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G + Sbjct: 519 QKRGGKGVAGVSTSGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L +++ E + T + E S+ Y +F T+ G V+R+ + +G IA+ L Sbjct: 579 ANLLPMDKEEFVATALAI--REFSFER-YFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTL 635 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+L+V+ ++LL T G RF IS IR GR + GV+GI+L D+V + Sbjct: 636 KEGDELLTVKEIDDNAEVLLATNQGLSNRFHISGIRP-TGRAAAGVKGIALKGQDRVAAG 694 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I + GN E Sbjct: 695 VI----------------------------------------MTGNGRNE---------- 704 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +LT+S G+GKRTS + + NR G G+ V+ + G ++ VN +D+++L++ Sbjct: 705 -VLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVNADDELLLLTS 761 Query: 859 KGTLIRVPVNEIRIASRATKGVVI 882 +IR+ V++I RAT+GV++ Sbjct: 762 ANKIIRLSVSDISAVGRATQGVML 785 Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T+S +G+ KRT ++ R GKG+ S + + + A ++ Q++L Sbjct: 496 EDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGDDFVQSFCA---TTNHQQLLLF 552 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 ++ G + +PV++I R KG I K+E V + IRE Sbjct: 553 TNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIRE 598 >gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] Length = 803 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/872 (40%), Positives = 527/872 (60%), Gaps = 92/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I DE+ +SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G+ N K ARI GE Sbjct: 10 IEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL + A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMAT+IP HNL E VD Sbjct: 130 EMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 V +ID+P+ ++ LM+ I+GPDFPTG +++ + +KN Y GRG IV+RG H+E+ Sbjct: 190 ALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSELKNVYEEGRGRIVVRGKVHVEE-- 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R ++IV+TEIPY V+KA ++E+IA+LV++ + + ++RDESD++G RVVIE+ + + Sbjct: 248 GKRLKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIPKDTN 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+I+N LY+ T+LQ F+V M+ ++ K P L G+L+AF+ R EV+ RR +Y Sbjct: 308 EDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAEYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K RAHV+ GL A + VV I+R S + E+AR LM+ Sbjct: 368 KFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ +SE Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEISEEQAKAILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKDEKVR 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K+ PRRT I + L + E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKKEFLYLKERYGDPRRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 QRRGGKG + + ++D V + + +S LF ++ G Y K +++ RGK + Sbjct: 522 QRRGGKGITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L ERI ++P + +V TK G ++R L +F + G A++ Sbjct: 582 SAFLNLEDTERIVALVPL-----NGKGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIR 636 Query: 678 LDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S T E + L + TKLG +RFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM +V S EG Sbjct: 696 SMDVV-------------------------------------PSEEGE------------ 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ILTV+EKGFGKRT +R+ R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 707 ---ILTVTEKGFGKRTPVQLYRVQKRGGTGLR--NISDVNKTGHVVAVRYVKGDEEIVVV 761 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR+PV+EI + R TKGV + D Sbjct: 762 TRNGMMIRMPVSEIGVIGRVTKGVKLIELGDD 793 >gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] Length = 860 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/893 (40%), Positives = 533/893 (59%), Gaps = 89/893 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + + Y K A G Sbjct: 20 VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + A Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG GIAVGMATNIP HNL EV+D Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 GC+A ID+PDIDL LME I+GPDFPT +I+GR+GI+ AYATGRG I +RG + IE+T Sbjct: 200 GCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R QI++TEIPY VNKA ++E +A+LV+EKRI I L DE++R+G R+V+++++ A+A Sbjct: 260 NGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 319 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 VILNQLY+YT LQ V M+A++ P+ TL +L+ +V F++EVV RRT+Y L KA Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 379 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++RAH+L GL A +DE++ IR + + + D Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 Q AI++L+L RL GL I EL SL +I++ IL+ +R+L I Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAI 474 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K ELL +K RRT I +++ ED I E V T++ GY+KR + Y+AQR Sbjct: 475 VKDELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 534 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G SG+ ++ED V ++F+ STH VLF + G +++ K + + GS ++G ++N Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVN 594 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE++T ++ +D + + YV TK G ++R L + I +SG I + L+ Sbjct: 595 LLQLAEGEKVTNMICQSKD-AEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 653 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D + + + +++ T+ GQ +RF R GRN GVR I LA+GD+V+ + I Sbjct: 654 GDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRNGHGVRAIRLAEGDEVVGVCI 712 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 C+E + Sbjct: 713 -------------------------------------------------CRE----GGTV 719 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G G+R+ +RI+ R GKGIR DVS+ + AV V+D D ++L S +G Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDVSR----DKVAAVKIVDDVDDVLLSSQEG 775 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAES 908 +IR+ NEI + SR GV + ++++V+ + R ++E +D +E+ Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEKIDASEA 828 >gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7a] Length = 745 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/710 (45%), Positives = 476/710 (67%), Gaps = 32/710 (4%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ + K ARI Sbjct: 42 NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+V+GKYHPHG++++Y A+ RMAQD+++R LI+G GNFGS+DGD AA RYTE R+ K Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 LL D+GKDT+D+R N+D S EPVVL A+ PN+L+NG GIAVGMATNIP HNLGE Sbjct: 162 ITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVDG VA+IDNP+I +D L+ I+GPDFPTG +I G+ GI +AY TGRG + + G IE Sbjct: 222 VVDGIVALIDNPEISIDELIGYIKGPDFPTGGIINGKQGIYDAYKTGRGKLRVAGRVEIE 281 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + R+ IVVTE+PYQVNK+ ++EKIA+LV++K++ I+DLRDE+DR G R+VIELK+G Sbjct: 282 TSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRDETDRDGIRIVIELKKG 341 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +++ILN LY++T LQ+ F V M+AL P L +L+ ++ R EV+ RRT++ L Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFEL 401 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KAR+RAH+L G IA+ N++EV+RIIR S + AR EL+ + Sbjct: 402 KKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELIDK----------------- 444 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 SE+Q +AIL++RL RLTGL RD I E N L I++ + ILS S++ Sbjct: 445 ---------FEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKI 495 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 GIIK+E L +K++ RRT I ++ ED I E++VVT++ GYVKRV + YR Sbjct: 496 YGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +Q+RGG G + ++D V D++I ++L F++ G V+ KV+ +P QARGK Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + NI++L+ E+++TI+ E E + N + F T++G V++++L+ F I ++GK A++ Sbjct: 616 IGNIINLDNDEKVSTIIKVREFEKNRN---LFFVTRNGVVKKSELTLFSNIMKAGKRAIR 672 Query: 678 LDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 L+ DE++ + + + E++I T+ G ++F +R G ++VGVR Sbjct: 673 LNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSM-GTSAVGVR 721 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 12/141 (8%) Query: 770 EEITSLKND------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 EE LK D + + +E ++L E+ ++T++EKG+ KR + +R R Sbjct: 501 EEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKRG 560 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV-- 881 G G+ AT+ E + ++ D +++ + KG + + V EI + +G + Sbjct: 561 GIGVNATNTV---EDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKLIG 617 Query: 882 -IFSTAKDERVVSVERIRESE 901 I + DE+V ++ ++RE E Sbjct: 618 NIINLDNDEKVSTIIKVREFE 638 >gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205] Length = 843 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/889 (41%), Positives = 535/889 (60%), Gaps = 73/889 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCAR+ GEV+GK Sbjct: 1 MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLL 143 YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL+ LL Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 +D+ +TVDF N+DGS QEP V+ AR P +L+NG GIAVGMATNIP HNL E++DG + Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259 A+I NP++ L + GPDFPTG ILGR GI+ Y TGRGS+ +RGV+ IE K Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 DR+ +++TE+PYQ NKAA++E+IAELV +K++ IAD+RDESDR G R+VIEL+R A Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + RRT+YLL K Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A +R H+L+GL IA+ NLD ++ +IR + + +AR EL+++ Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQ------------------- 401 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSEVQ AIL+++L RLT L D IR E L +I + DIL+ + R+ G Sbjct: 402 -------FGLSEVQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVYG 454 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +I EL ++ D+PRRT I++ +ED D I E VV ++ GY+KR+P+S + A Sbjct: 455 LITDELGVIRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RG +G++G + E+ V + H S+L FS G VY +R+P+ S A+G ++ Sbjct: 515 SRGTRGKAGTKTQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIV 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 +L + + E+IT+++ E + +V T G V+R +LS F I +G IA+ L+ Sbjct: 575 QLLPIPREEQITSLLAVSE---FTEDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLE 631 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVIS 737 D + V + +L+ ++ G + F +S +R GR + GVR ++L GDQ++S Sbjct: 632 EGDALTWVRLAQPGDSVLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 M ++ AD R+ S + DTEE+ + EG Sbjct: 691 MDVLPVELAD---RVEGSSAASDE-----DDTEEV------APSEG-------------- 722 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 ++L S G GKR FRI R+G G+RA + ++ LV + + ++++LVS Sbjct: 723 PWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKFRRDGDV--LVGLRVLGAGEELLLVS 780 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++G ++R+ + + SRA GV K +R+ S +R+ E +V A Sbjct: 781 ERGVIVRMQADAVPQQSRAATGV------KLQRLDSGDRLSEVVLVPPA 823 >gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] Length = 816 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/878 (40%), Positives = 517/878 (58%), Gaps = 85/878 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++ +N+ Y K AR+ Sbjct: 9 INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSARVV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YDAL RMAQ++S+R +++GQGNFGS+DGD AA RYTE R+ + Sbjct: 69 GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TV FRPNYD S QEP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 129 AGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG + +DNP D+ ++ +I GPDFPTGA I G G+ +AY TGRGSI IRG +E+ Sbjct: 189 CDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGRGLYDAYTTGRGSIKIRGRVEVEE 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 D + +V+ EIPY +NK++++EKIA L+ + RI ++DLRDESDR+G R+V++LK+G Sbjct: 249 RKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLKKGV 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 AD+I N LY+YT L++ F +NM+ + +P + +L+ F+A R EV++RRT Y L Sbjct: 309 IADIITNALYKYTPLETSFGINMMVVADNRPATLNIQQMLEHFLAHRREVILRRTAYDLR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 369 KSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMER------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLT L R + +E N L I+ IL++ L Sbjct: 411 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEVLR 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G+I+ E+ ++D TPR+T ++E L + D I ED+V+T+S GY+KR + Y+ Sbjct: 463 GVIRDEIKEIQDRYATPRKTEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 522 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G + Sbjct: 523 QKRGGKGVAGVSTSADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 582 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L +++ E + T + E S Y +F TK G V+R+ + +G IA+ L Sbjct: 583 ANLLPMDKEEFVATALAIREFSSER---YFLFVTKRGMVKRSCTELYKNCRSTGIIAVSL 639 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+L+V+ ++LL T+ G RF IS IR GR + GV+GI+L D+V + Sbjct: 640 KEGDELLTVKEIDDNAEVLLATQQGLSNRFHISGIRP-TGRGAAGVKGIALKGADRVAAG 698 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 I + GN E Sbjct: 699 VI----------------------------------------MTGNGRNE---------- 708 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPVNDNDQIILVS 857 +LTVS G+GKRTS + + NR G G+ V+ K ++ V V P D ++L++ Sbjct: 709 -VLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTPKTGQVIGAVMVLP---EDDLLLLT 764 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +IR+ V+ I RAT+GV++ D+ V + Sbjct: 765 SANKIIRLSVSGISSVGRATQGVMLVRMENDDTVTGFD 802 Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T+S +G+ KRT +++ R GKG+ S + + + A ++ Q++L Sbjct: 500 EDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQSFCA---TTNHQQLLLF 556 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 ++ G + +PV++I R KG I K+E V + IRE Sbjct: 557 TNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIRE 602 >gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] Length = 862 Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 541/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++D+ D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8] gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8] Length = 838 Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust. Identities = 361/888 (40%), Positives = 531/888 (59%), Gaps = 97/888 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ Y KCA G V+G+ Sbjct: 15 MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+A++YDAL R+AQ +SLR L++G GNFGSVDGDPPAA RYTE R+ K + +L Sbjct: 75 YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEARMAKMSLNMLT 134 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF+PNYD QEPVVL +R+PN+L NG GIAVGMATNIP HNL EV++G Sbjct: 135 DIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIPPHNLHEVIEGMKI 194 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 V+ NPD LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I++R + IE+ G R Sbjct: 195 VMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILRSKTSIEEIKG-RN 253 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 I+VTEIPY VNKA ++E IA LV++KRI I DLRDE+ R G R+VIELK+ A+A V+L Sbjct: 254 CIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIVIELKKDANAQVVL 313 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N+L+ T LQ V ++AL P+ TL IL+ ++ F+ +V+ RRT++ L KA++R Sbjct: 314 NKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRRRTEFDLKKAKERE 373 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL IA+ N+DEV+ I++ S N ++ LM R Sbjct: 374 HILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFG---------------------- 411 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 LS++Q I ++ L RLTG+ R I +EL + ++ + DIL++ R+L II +E Sbjct: 412 ----LSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEE 467 Query: 505 LLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 + +++++ RRT+I V G +D+ED I E+ VVT +++GY+KR+P+SVY+AQ RG Sbjct: 468 VEAIQEKYGDERRTQIENVSGEVDIED--LIPVEESVVTYTNVGYIKRMPISVYKAQNRG 525 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG +G+ R++D VT++ + S+H ++LF ++ G YK K + LP GS +RG + N+L Sbjct: 526 GKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLL 585 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L+ I ++ E ++ Y+V TK G ++R LS + + + G IA+ LD D Sbjct: 586 ELSDDNLIAAMIKV---EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKRGLIAIGLDDGD 642 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 EI V N++L+ T G +R + +RV + R + GVR I L +GD Sbjct: 643 EIAGVRLTEGNNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKL-RGDD-------- 692 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 Y+ M+ R S +LT Sbjct: 693 -----------YVVSMARIREGAS---------------------------------VLT 708 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 VSE G G+R + + +R G G+ ++ N G + + V+++D II++S G + Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGV----LNYKN--GDVCGIKVVDEDDDIIMISSDGIV 762 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 IR+ +I + R ++GV + D +VV+ R +E D AE E Sbjct: 763 IRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTR---TEHDDNAEIAE 807 >gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3] gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3] Length = 834 Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust. Identities = 365/895 (40%), Positives = 519/895 (57%), Gaps = 89/895 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 13 IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+ AIYD L R+AQ WSLR L++G GNFGS DPPAA RYTE R+ Sbjct: 73 RVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL Sbjct: 133 APLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +D+PD L+AL+ +I+GPDFPT +I+GR GI+ AY TGRGSI +R Sbjct: 193 REVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIVGRNGIEEAYRTGRGSIRMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R Q+VVTE+PYQVN + EKIAELVR+ R+ IAD+RDE S R G R+ Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDETSARIGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR A A V+LN LY++T LQ F VNM+A+ P L +++ +V + +V+V Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMVRYYVEHQIDVIV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMER---------- 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AIL+++L RL L R I +E L +I + I Sbjct: 422 ----------------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S +R II +EL V ++ RRTR+V DM ED I +ED+VVTV+ GY KR Sbjct: 466 LASPTRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQEDVVVTVTRGGYAKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+QRRGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + Sbjct: 526 TKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + NIL+ Q ERI ++ + E++ Y+V ATK G ++ L DF Sbjct: 586 RSAKGQHVANILAFGQDERIAEVIAVKDYEAAP---YLVLATKRGLCKKTALHDFDSNRA 642 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G +A+ L DE+++ +D+LL ++ Q +RF ++ GR + GV G+ Sbjct: 643 GGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+++SM +V + G T + Sbjct: 703 DAEDELLSMDVV-----------------------VPGTTAD------------------ 721 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + G+ KRT ++ + R GKG+ + ++ G LV V+ Sbjct: 722 ----------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVDP 769 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +DQ+ ++ G ++R ++R A R T GV + +VV V R ++E D Sbjct: 770 DDQLYAIASNGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVGVARNADAEDTD 824 >gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] Length = 856 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 349/891 (39%), Positives = 529/891 (59%), Gaps = 90/891 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + N K+ KCA Sbjct: 9 IVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +ISG+ G YHPHG IY L RMAQ W +R L++GQGNFGSVDGDPPAA RYTE RL Sbjct: 69 KISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA L+DDL KDTV+ PNYD + +EP V +++PN+L NG GIAVGMATNIP HNL Sbjct: 129 TTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ + +++NP +D +M+++ GPDFPTG +I G GIK A+ TGRG +++RGV Sbjct: 189 NELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYRGIKEAFHTGRGKLILRGVIR 248 Query: 256 IEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E+ + DR ++ + EIPY VNK+ ++E IAEL+ K I I+DLRDESD+ G R+VIE Sbjct: 249 VEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMRIVIE 308 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG +VI+NQLY+++ LQ F NM+AL+ P + ++ ++ R +VV RRT Sbjct: 309 LKRGEVPEVIINQLYKFSDLQITFGCNMLALDKGLPRTMNVKQLISVWIEHRIDVVRRRT 368 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ LNKA RAH+L G A+ +LDEVVR+IR S N + AR EL+++ Sbjct: 369 RFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQ------------- 415 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +E Q AIL+LRL +LTGL RD I +E L +I +L+S Sbjct: 416 -------------FEFTERQANAILDLRLYQLTGLERDKINDEYQELLKKIDYLRAVLAS 462 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + + II++ELL ++ + R+T+I+ ++ ED I E +++T+S Y+KR+P+ Sbjct: 463 EAMVKEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIKRMPV 522 Query: 554 SVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + +R QRRGG+G +G+ + R+ED + L++ +TH +L F++LG Y KVW++P + Sbjct: 523 NTFREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRK 582 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++GK LIN+L + E+I TI E ++ ATK V+++ L++F R Sbjct: 583 SKGKPLINLLEDIRPEEKIATIQRVSSFEEE---ACILMATKRAVVKKSLLNEFSNPRRK 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-A 730 G A+ +D DE+++ E ++L T G VRF S +R GR + GV+G +L Sbjct: 640 GIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPM-GRTARGVKGATLRG 698 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D ++ +V +GD Sbjct: 699 ENDYIVGCEVV------------------------NGD---------------------- 712 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + IL V E GFGKR+ DFR +NR G G+R+ S+ N G ++ V D Sbjct: 713 -------ESILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERN--GKVIGALCVTDE 763 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D ++++S G +R+ +N++R+ R T+GV + + +++ +V++++++ SE Sbjct: 764 DGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSE 814 >gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] Length = 862 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 366/916 (39%), Positives = 545/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D +L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKIHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + AR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S L +I+ EL ++++ D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSEILLENLIRDELKEIRNKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ + D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLT--------------------- 699 LS++ I G A+ LD DE+++ + E++ILL+ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEILLSGSEENLENQEIKNLDDENLEN 686 Query: 700 --------------TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TK G C++FP++ +R GR S GV I + + + AIV+ D Sbjct: 687 EESASIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAIVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL+VS Sbjct: 746 ---------------------------------------------------EQEILSVSA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] Length = 835 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 347/912 (38%), Positives = 552/912 (60%), Gaps = 91/912 (9%) Query: 1 MTEHIISSDE------EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 M++H ++E + I V++++EM+ S+L+YA++VI+ RA+PD++DGLKPV R Sbjct: 1 MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 RIL+ M ++GV + Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R L++G Sbjct: 61 RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFGS+DGD AA RYTE ++ K A L+ ++ K+T+DF NYDG+ +EP+VL PN+ Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234 L+NG GIAVGMAT IPTHNLGEV+DG + I+N DI +D LM+ I+GPDFPTG +LG Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 +K+AY TG+G+++++ SH+ + G + I+VTEIPYQV K ++EKIA LV+ K + Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVLEERG-KTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299 Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354 I DLRDES R+G ++VIELKR A+A +ILN+LY+++ L+ F +NMVAL G P+ +L Sbjct: 300 GITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359 Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414 IL+AF FR EV+ R+ + L KA R H++ L + +++ +++I+ S + + A+ Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQ 419 Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474 R+LMQ+ +N E+Q++AILE+ L RL+ + Sbjct: 420 RKLMQK-YN-------------------------FDEIQSKAILEMSLQRLSNQETQKLI 453 Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCI 533 E +L EI EC I+ S+ + I+++ELL +K + R+T + + L+ EDED I Sbjct: 454 TEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ++ +++T+++ GY+K + + Y+ Q+RGG+G SG+ + +EDF+ L I STH LFF+ Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + +P+G Q++G L+N L + E +T+ + S + Y+ FATK Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQD--YLFFATK 631 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L ++ I++ G IA++L DE+L+V+ T +I+L + G + F + I Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKI 691 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + + RNS+GV G+ L D+ + A + D+ Sbjct: 692 KSIS-RNSMGVIGMRLG-SDEFLVGAALFDVDS--------------------------- 722 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 KEQ IL ++E GFGK T+ +RI RSGKG + V+ Sbjct: 723 ----------------------KEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVN 760 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892 ++ G L+ + V +D +I+ SDKG ++RV +++I + ++AT+G I + V Sbjct: 761 --DQKGRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818 Query: 893 SVERIRESEIVD 904 SV +++ E++D Sbjct: 819 SVAVVKK-EVLD 829 >gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] Length = 808 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 356/888 (40%), Positives = 521/888 (58%), Gaps = 92/888 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I V + EM++SYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+ N+ Y Sbjct: 3 EKNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R LI+G GNFGS+DGD PAA RYT Sbjct: 63 RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A L+ D+ KD VDF PNYD S +EPVVL + P +L+NG GIAVGMATNIP Sbjct: 123 EVRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +I+ P+ +++ L+ I+GPDFPTG I+G GI+ +Y TG+G +++R Sbjct: 183 PHNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+T + I++ EIPY VNK+ +L +IAELV+E++I I DLRDESDR G RVV Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ +++NQLY++T LQ+ F V M+A+ +P+ F L +L F+ R+ VV R Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KAR RAH+L GL IA+ +LDEV+ IIR S N E AR +LM + Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+++Q +AIL++RL +LT L ++ + E+N + I + IL Sbjct: 412 ---------------FKLTQIQAQAILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +I +EL +K + R+T I E D+ ED + VV ++ Y+KR Sbjct: 457 KDEKELWRVISEELKEIKRKYADERKTLIEEEEKSDITIEDILPDNPEVVCITQDSYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS Y+ QRRGGKG + + ++D +T + ST +++ FS+ G VY K + L S Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETS 576 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 Q++G + L+++ E+IT I+ FP+ NLY F T G V++ + +F Sbjct: 577 RQSKGVPIKEYLNIDNDEKITEIISVNEFPK------NLYFFFVTSKGIVKKTSIEEFEN 630 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + +SG A+KL D +++V + ++I++ TK G +RF +R GR + GV GI Sbjct: 631 VRKSGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREM-GRIAQGVIGI 689 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K D VI G I + Sbjct: 690 KLRKDDSVIG---------------------------------------------GVIFK 704 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E Q I+ V+ G GKR + +F + R G G+RA ++ + G LV V V Sbjct: 705 ESKQ--------IVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITP--KTGDLVGVKNV 754 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 ++ND+I++ + +G +IR+PVN I I SR ++GV + +D+ VVS++ Sbjct: 755 SENDEILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSID 802 Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 K + V+ KG K+TS +F N GI A K+ E LV VF + ND+I++ Sbjct: 607 KNLYFFFVTSKGIVKKTSIEEF--ENVRKSGIYAI---KLGEEDYLVNVFLTSGNDEIMI 661 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + KG IR ++R R +GV+ KD+ V+ +ES+ Sbjct: 662 FTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDDSVIGGVIFKESK 707 >gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] Length = 861 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 370/902 (41%), Positives = 550/902 (60%), Gaps = 85/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE ++ I +V ++ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K Sbjct: 3 EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQDWS R L++G GNFGSVDGD AA R Sbjct: 63 AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L D+ KDT+D+ NYDGS +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+ +++NPD LME I GPDFPTG +++G++GI+ AY TG+GSI+ Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE +E+I+V E+PY VNKA ++E+IA+L R+KRI I DL DESDR G R Sbjct: 243 VRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI+++R SA V+LN LY+ TS+Q+ F NM+A+ P+ +L IL+ ++ +E V+ Sbjct: 303 IVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT Y KA RAH+L GL IA+ +++E++RIIR S + A+ L++ Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIE---------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE Q +AIL++R+ RLTGL RD I +E L I++ D Sbjct: 413 ----------------TYGLSEKQAQAILDMRMVRLTGLERDKIESEYTELIALIEDMAD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ II+ ELL V+++ RRT ++ G +L +EDED I ED+V+T++ GY+ Sbjct: 457 ILAKPERIHKIIETELLEVQEKFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P S +++QRRGG+G G+ + D+DF+ L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPSSEFKSQRRGGRGIQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G +IN+L ++ GE + ++ + + + LY+ F T+ G V+R + F I Sbjct: 577 YGRTAKGIPVINLLGIDSGETVQAVINVRGE--AEDGLYLFFTTRLGTVKRTDVKAFSNI 634 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE++SV + +I++ T +G V F +R GR + GVRGI Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + D VI + + LK DS V Sbjct: 694 LRENDYVIGVDL----------------------------------LKEDSEV------- 712 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L ++EKG+GKRT + ++ I R GKGI+ +++ N G L + V Sbjct: 713 ------------LIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I+L+++ G +IR V+ + RAT GV + A++ +V ++ ++ I DE + Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDE 818 Query: 909 TE 910 TE Sbjct: 819 TE 820 >gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1] gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1] Length = 811 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 363/895 (40%), Positives = 523/895 (58%), Gaps = 87/895 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E +G+ ++I +EM++ Y+ YA++VI+GRAIPD RDGLKPVHRR L+ M +MG +K Y Sbjct: 4 EGEGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+VMGKYHPHG++AIYD L +MAQ +S R +L++GQGNFGS+DGD AA RYT Sbjct: 64 KKSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K + LL D+ K TVDF PN+D S QEP VL AR PN+LVNG GIAVGMATN+P Sbjct: 124 EARLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV + VID+ + LM+++ GPDFPTG +++G GI++AY TGRG V+R Sbjct: 184 PHNLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCVVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 GV+ IE+ G QI++TEIP+QVNKA ++E IA LVR+KRI I D+RDESDR G R+V Sbjct: 244 GVAEIEE-EGRTPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELKRGA+ VILN LY++T+L+S F + +A+ +P L I+ F+ R +VV R Sbjct: 303 VELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVVRR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L K +R H+L GL +A+ N+D V+ IR S + A++ L+ + Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAK----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L EVQ AIL+++L RL L I +E +++ EI+ IL Sbjct: 412 ---------------FALDEVQADAILKMQLRRLAALEHQKILDERDAIAAEIERLSAIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S + +L IK+EL+ + RRTRI + + ED I + ++V+++ YVKR+ Sbjct: 457 ASEASILAEIKKELVDIGARFGDERRTRIAQAAEAFDREDLIEDKPVLVSLTSSNYVKRI 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L YR QRRGG G G+ +D D V +F+ + H ++L F+ G +Y K++ LP G Sbjct: 517 DLDTYRNQRRGGHGVIGMATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQR 576 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +GKAL+N+L+L+ ER+TT++P E ++ FAT++G V + L +F + ++ Sbjct: 577 TGKGKALVNLLNLDGEERVTTVIPVREYRPDH---HLFFATRNGTVAKMALDEFSRPRQT 633 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ L D ++ V+ +++LTTK GQ +RF A+R RN++GVRGI L Sbjct: 634 GINAINLRDGDALVDVKATDGNQELILTTKFGQSLRFHEEAVRPVH-RNAMGVRGIKLRH 692 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD + ++AIV E Sbjct: 693 GDALQAIAIV----------------------------------------------EDDH 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L + EQ G+GKRT ++R R G+R V G +V V+D+D Sbjct: 707 LLTITEQ--------GYGKRTEFDEYRGHGRGTLGVRNIVVDA--RAGNVVGSMAVSDDD 756 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +II++S G +IR V+EI I R T+GV + +RV+ + E +EA Sbjct: 757 EIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEPEEEA 811 >gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293] gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293] Length = 818 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 366/889 (41%), Positives = 524/889 (58%), Gaps = 87/889 (9%) Query: 11 EEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE KG + +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ ++ Sbjct: 2 EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KC RI G+V+GKYHPHG+ +IYDAL R+AQD+S+R ++ QGNFGSVDGDPPAA R Sbjct: 62 AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ + A +L D+ K+TVD+ PNYD S QEP+VL +P +L NG GIAVGMATN Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV VA I++ +I +D LM+ I+GPDFPTG +I GR GIK A+ TG+G I Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKIT 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE T +++I+VTEIPY VNKA ++ KIA+LV+EKRI I+DLRDESDR G R Sbjct: 242 VRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRG V+LNQL+ +T+LQ F+V +AL P++ L ++ FV R EVV Sbjct: 302 IVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L KA +RAH+L GL IA+ N+DEVV+II+ S + AR LM+R Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q++AIL++RL +LT L I EL + I D Sbjct: 413 -----------------FKLSERQSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKD 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +LSS ++LG+++ E + + R+T IV + + ++ ED I +EDMVV VS+ G++ Sbjct: 456 LLSSEQKILGVVRDETEEIAQKYGDDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP+S YR Q RGGKG S + +EDF+ LFI STH +LF ++ G Y KV +P Sbjct: 516 KRVPVSSYRNQGRGGKGSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPE 575 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 GS +RG + +L ++ E ITTI+ E Y+ AT G V++ K SDF Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFSEEH---YLFMATARGIVKKVKTSDFRNA 632 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA+KLD+ D +++ +++I++ ++ G +RF +R GR S GV GI Sbjct: 633 RTRGIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQVRAM-GRASRGVTGIR 691 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D+ +A +L + D E++ Sbjct: 692 LQSDDE---LAGILRVE----------------------DNEKM---------------- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 L +SE G GKR F + R +G A S+ + G +V V V Sbjct: 711 ------------LLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERS--GEIVGVLSVL 756 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + D ++ ++ +G I++ V+++ + + +GV I + + VV V R+ Sbjct: 757 EEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARV 805 >gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec] gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec] Length = 837 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 367/888 (41%), Positives = 515/888 (57%), Gaps = 91/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 13 IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYD L R+AQ WSLR L++G GNFGS DPPAA RYTE R+ Sbjct: 73 RVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL Sbjct: 133 APLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +D+P+ L+AL+ II+GPDFPT +I+GR GI++AY TGRGSI +R Sbjct: 193 VEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIVGRNGIEDAYRTGRGSIRMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R Q+VVTE+PYQVN + EKIAELVR+ ++ I+D+RDE S R G R+ Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR A A V+LN LY++T LQ F VNM+A+ P L ++ +V + +V+V Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMISYYVEHQVDVIV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + E AR +LM R Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMAR---------- 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AIL+++L RL L R I +E L +I E I Sbjct: 422 ----------------FSLSEIQATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R II QEL V ++ RRTR+V DM ED I RED+VVTV+ GY KR Sbjct: 466 LASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + Sbjct: 526 TKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + NIL+ +Q ERI +M + +++ Y+V ATK G ++ L+DF Sbjct: 586 RSAKGQHVANILAFSQDERIAEVMAIQDYQAAP---YLVLATKRGLCKKTALTDFDSNRA 642 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G +A+ L DE++S +D+LL ++ Q +RF ++ GR + GV G+ Sbjct: 643 GGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702 Query: 730 AKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D+++SM +V + AD Sbjct: 703 DEADELLSMDVVVPESPAD----------------------------------------- 721 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L + G+ KRT ++ I R GKG+ + ++ G LV V Sbjct: 722 -----------LLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKI--VSTRGGLVGALVVE 768 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 NDQ+ ++ G ++R ++R A R T GV + +VV V R Sbjct: 769 PNDQLYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVAR 816 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 55/236 (23%), Positives = 111/236 (47%), Gaps = 23/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + LD DE++++ + ++ GQ + RF +S I+ A + + +R ++ + + Sbjct: 393 IALDHLDEVIALIRNAESAEV----ARGQLMARFSLSEIQATAILD-MQLRRLAFLERQR 447 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEE 788 +I A L A D E I + QR +I + E+ D EG++S Sbjct: 448 IIDEAAELRAKIDELEAI--LASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMS-- 503 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++TV+ G+ KRT + +R R GKG++ + + E + F Sbjct: 504 -VEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQG---AALREDDIVEHFFVTT 559 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 + ++ ++KG + R +E+ +R+ KG I + ++DER+ V I++ + Sbjct: 560 THHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYQ 615 >gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3] Length = 860 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 358/893 (40%), Positives = 533/893 (59%), Gaps = 89/893 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + + Y K A G Sbjct: 20 VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + A Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 139 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG GIAVGMATNIP HNL EV+D Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 199 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 GC+A ID+P+IDL LME I+GPDFPT +I+GR+GI+ AYATGRG I +RG + IE+T Sbjct: 200 GCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 259 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R QI++TEIPY VNKA ++E +A+LV+EKRI I L DE++R+G R+V+++++ A+A Sbjct: 260 NGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 319 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 VILNQLY+YT LQ V M+A++ P+ TL +L+ +V F++EVV RRT+Y L KA Sbjct: 320 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 379 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++RAH+L GL A +DE++ IR + + + D Sbjct: 380 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 425 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 Q AI++L+L RL GL I EL SL +I++ IL+ +R+L I Sbjct: 426 -----------PQADAIVKLQLGRLAGLEILKIEEELASLHAKIEDWEAILADDARVLAI 474 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K ELL +K RRT I +++ ED I E V T++ GY+KR + Y+AQR Sbjct: 475 VKDELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 534 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G SG+ ++ED V ++F+ STH VLF + G +++ K + + GS ++G ++N Sbjct: 535 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVN 594 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE++T ++ +D + + YV TK G ++R L + I +SG I + L+ Sbjct: 595 LLQLAEGEKVTNMICQSKD-AEQSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 653 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D + + + +++ T+ GQ +RF R GRN GVR I LA+GD+V+ + I Sbjct: 654 GDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GRNGHGVRAIRLAEGDEVVGVCI 712 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 C+E + Sbjct: 713 -------------------------------------------------CRE----GGTV 719 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G G+R+ +RI+ R GKGIR DVS+ + AV V+D D ++L S +G Sbjct: 720 LTVTENGKGRRSDIDTYRITARGGKGIRNYDVSR----DKVAAVKIVDDVDDVLLSSQEG 775 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAES 908 +IR+ NEI + SR GV + ++++V+ + R ++E +D +E+ Sbjct: 776 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEKIDASEA 828 >gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] Length = 824 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 363/905 (40%), Positives = 539/905 (59%), Gaps = 90/905 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + ++ ++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 1 MDENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P Sbjct: 61 TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVG Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 M TNIP HNL EV+ G ++ NPD LM+ I GPDFPTG +I+GR GI AY +G+ Sbjct: 181 MTTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYRAYESGK 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+IV+R ++IE RE+I+V+EIP+ VNKA +++KIA+L REK I I +RDESD+ Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ + Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E+VV RRTK+ L KA RAH+L GL IA+ N+DE+V IIR S + + A+ L+ R Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L + Q++AIL++RL RLTGL RD + E L +I Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIA 454 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++TV+H Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVVSIEDEDLIEKQNILLTVTH 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KR+P+ ++ Q RGGKG G+ ++D DF+ L STH +LFF++ G VY +K + Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P A+G ++N+L L +GE++ ++ PE ++ Y+ F TK G V+R +S+ Sbjct: 575 EIPEYGRMAKGLPIVNLLQLEKGEKVQAVVNIPE---GADDNYLFFVTKMGTVKRTHVSE 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG IA+ L DE+ +V T +IL+ T LG V F S +R GR + GV Sbjct: 632 FANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRAM-GRTAAGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI+L D V+ ++ D Sbjct: 691 RGINLRPEDYVVGSGVLGAND--------------------------------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 Q L + E+ G+GKRT + ++ + R GKGI+ ++++ N G L V Sbjct: 712 ------QVLVISEK--------GYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RES 900 ++ ++ I++++ G +IR ++ SR+T GV + D RV S+ + + Sbjct: 756 IVLDSDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTIVPTEAEQD 815 Query: 901 EIVDE 905 EI DE Sbjct: 816 EIGDE 820 >gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40] gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus] gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40] Length = 862 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 380/937 (40%), Positives = 558/937 (59%), Gaps = 128/937 (13%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M E+I SS+++ I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 1 MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 +GV Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+ ++GQGNFGSV Sbjct: 57 NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE R+ A LL DL KDTVDF PNYD S EP VL AR PN+L+NG Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M I+GPDFPTG +I G+ GI A Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 Y TGRG I +R +HIEK +++ IVV E+PYQVNKA + IA+LV+EK I I+++R Sbjct: 237 YKTGRGRIKLRAKTHIEKKP-NKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DESDR G R+VIELKR A ++++LN L++ T ++ F V M+A+N +P+ F+L+ +LK Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F+ R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S + +AR LM + Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK 415 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LSE+Q+ AIL++RL++LTGL R+ + EL + Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI 449 Query: 481 GIEIKECLD-ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 +E+ E LD IL S + + II+ ELL +K + PR T IV+ D++ ED I E+MV Sbjct: 450 -LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMV 508 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT++H GY+KRVP Y Q+RGGKG+ V D+DF+ F +H +++F + G +Y Sbjct: 509 VTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLY 568 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVR 658 KV+++P GS A+GKA++N++SL E+I I+P + DES + F TK+G V+ Sbjct: 569 WLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKS----LAFFTKNGIVK 624 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------------------------ETCTQEN 694 R LS+F I G A+ LD DE+++V +T +++N Sbjct: 625 RTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDN 684 Query: 695 D---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHA 744 + TK G C++F ++ +R GR S GV I + D+V+ ++ Sbjct: 685 SENSLESGKMLFAVTKKGMCIKFALNKVRQI-GRVSRGVTAIRFKENLDEVVGAVVI--- 740 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 +NDS Q IL+VS Sbjct: 741 -------------------------------ENDS------------------QEILSVS 751 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 +KG GKRT++ ++R+ +R GKG+ ++ + LV V V++ ++ ++ G +IR Sbjct: 752 QKGIGKRTTADEYRLQSRGGKGVICMKLTP--KTKDLVGVVMVDEEMDLMALTSSGKMIR 809 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + IR A R T GV++ + DE VVS+ R + E Sbjct: 810 VDMQSIRKAGRNTSGVIVVNVDGDE-VVSIARCPKEE 845 >gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301] gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9301] Length = 865 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 352/877 (40%), Positives = 535/877 (61%), Gaps = 66/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Sbjct: 14 EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G ++I+NP I+ L EII+GPDFPTG ILGR GI+ + TGRGSI Sbjct: 194 IPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGRGSIT 253 Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK++ I+D+RDESDR Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + +AR +L + Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQ------N 427 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 D K LS +Q AIL+++L RLT L D I+ E N L +I Sbjct: 428 DHK--------------------LSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKIN 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL+S+ R+ II +EL + + +PR+T I++ ++D D I E VV ++ Sbjct: 468 LYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANERSVVLLTEA 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + + RG +G++G +++D V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G + +L + + E+IT+I+ +S ++ Y++ TK G ++R LS F Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSIVAV---DSFVDDSYLLMLTKAGFIKRTALSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + + +L+ +K G + F I+ +R GR + G Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDINELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ ++L +GD ++SM ++ AD +I Y K E++ D +VE Sbjct: 704 VKSMNLREGDNLVSMDVLTSNLADQLAKIEYPK-------------EDL-----DDNVEE 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N S+ ++L S G GKR FR+ R+G G+RA + LV+ Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRI--KYDQLVS 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + + ++++LV++KG ++R ++I SRA GV Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGV 831 >gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] Length = 829 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 370/893 (41%), Positives = 541/893 (60%), Gaps = 96/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + K+ K A Sbjct: 10 IQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAKFKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD AA RYTE R+ Sbjct: 70 RIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G A++ NPDI L LME I+ PDFPTG +I G+ GI +AY TGRG I +R +H Sbjct: 190 REILTGLKALLANPDISLVELMEFIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVRAKTH 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ S +E IV+ E+PYQVNKA ++E IA LV++K I ++++RDESDR G RVVIELK Sbjct: 250 IEQKS-KKEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMRVVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A ++++LN L++ TS+Q+ F + M+++ +P F +I ILK F+ R+ +++RRT + Sbjct: 309 RDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGIITILKHFINHRKTIIIRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL A++ +++V+R+IR S N E A+ L+ ++ SDI Sbjct: 369 DLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVS-EFDFSDI-------- 419 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 Q +I+ +RL RLTGL + I NEL L I+ IL S Sbjct: 420 -----------------QAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEE 462 Query: 496 RLLGIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L II +E V D + RRT I + D++ ED I E MVVT++H GY+KRVPL+ Sbjct: 463 VLHSIIAEEFDEVLDTYGSNERRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLT 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +Y Q+RGGKG++ V ++DF+ F +TH ++LF + G ++ KV+++P GS A+ Sbjct: 523 LYEKQKRGGKGKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIAK 582 Query: 615 GKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 GKA++N+L+L ERI +I+P F ED+ +VF T+ G V+R LS+F I + Sbjct: 583 GKAVVNLLNLMADERIRSIIPTTDFSEDKG------LVFFTQKGVVKRTNLSEFSNIRSN 636 Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+ LD D +++ + Q + + TKL QC++F I R GR++ GVRGI Sbjct: 637 GVRAIVLDEDDALITAKIADQSIKYLFIMTKLAQCIKFDIEKTRE-QGRSTRGVRGIKF- 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 KH D ++ NI Sbjct: 695 -------------------------KH------------------PEDEVIDANI----- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849 + EQ IL V+EKG GKRT + ++R++NR G G+ A ++ ++ G +V V++ Sbjct: 707 --IANDEQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMT--SKTGKYVVGCLMVDE 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + ++ ++ G +IRV + I +SR T GV I K + V +V R + I Sbjct: 763 SMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDDVANVSRCPKQPI 812 >gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 852 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 359/885 (40%), Positives = 536/885 (60%), Gaps = 84/885 (9%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 +VS+ DEM+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + K ARI Sbjct: 14 TVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDKPHKKSARI 73 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD AA RYTE R+ K Sbjct: 74 VGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEARMSK 133 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 + +L D+ KDT+DF+ NY +EPVVL AR+PN+LVNG GIAVGMATNIP HNLGE Sbjct: 134 ISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATNIPPHNLGE 193 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D ++ NPD+ +D LME++ GPDFPTGA+++G++GI+ AY TGRG I++R IE Sbjct: 194 VIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVMGKSGIRRAYQTGRGKILVRSKVDIE 253 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + + DRE+IVVTEIPY VNKA ++++IA+L R+KRI I DES R+G R+VIE++R Sbjct: 254 QLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMRIVIEVRRD 313 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 SA V+LN LY+YT +Q F NM+A++ P+ L IL ++ + EV+ RRT+Y Sbjct: 314 TSASVVLNNLYKYTPMQVSFGFNMLAIDKGVPKILNLKEILSKYLDHQVEVIRRRTEYDK 373 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA +RAH+L GL IA+ ++DE++ IIR S + + A++ELM R Sbjct: 374 RKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYE--------------- 418 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LS+VQ +AIL++RL RLTGL RD I E L I+ +IL S+ R+ Sbjct: 419 -----------LSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERI 467 Query: 498 LGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 II+ EL ++ RRT + G + D+EDE I ED+++ +++ GY+KR+ + Sbjct: 468 FQIIEDELNEIRTRFGDARRTELHIGEITDIEDESLIEEEDVLIALTNKGYIKRMTQDEF 527 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 Q RGG+G G+ + D D + L STH ++LFF++ G VY+++ + +P A+G Sbjct: 528 SVQNRGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGL 587 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 +IN++ +++GE + ++ D+ + + Y+ F TK G V+R S++ I +G IA+ Sbjct: 588 PIINLIKIDKGEEVKAMISI-SDQDTDHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIAL 646 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L D +++V I++ T G + F S +R GR + GVRG+ L D V+ Sbjct: 647 NLKEDDSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAM-GRTATGVRGVRLRDDDYVV 705 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 I+ VEG+ Sbjct: 706 GADIM---------------------------------------VEGS------------ 714 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L +++KG+GKRT + I NR G G++ +++S+ + G L + V ++ I+++ Sbjct: 715 --DVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNISE--KSGKLAGLLVVEGHEDILVM 770 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++G IR+ V I +SRAT GV + ++ V S+ I ESE Sbjct: 771 TNQGVAIRMKVEGISQSSRATLGVRMIRLDQEAVVSSITTILESE 815 >gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] Length = 894 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 354/892 (39%), Positives = 541/892 (60%), Gaps = 92/892 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 G++ + + EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+ + ++ K Sbjct: 70 GLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRKS 129 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R L++G GNFGS+DGD AA RYTE R Sbjct: 130 ARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEAR 189 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +LD + KDTV+F NYD S EPVVL +R+PN+LV+G GIAVGMAT IP HN Sbjct: 190 MSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPHN 249 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E ++ +A NP+I LME I+GPDFPTGA ILG GI +AY TG+G I +R + Sbjct: 250 LTETINATIAFARNPEITTKELMEHIKGPDFPTGATILGVKGIYDAYETGKGKIPLRSQA 309 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ + + +I++TEIPY V K ++EKI EL ++K + I +LRDES+R+G R+VI++ Sbjct: 310 KIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVIDV 369 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G +A ++LN+LY+ + LQ+ + N+VAL +P+ L IL ++ + EVV RR K Sbjct: 370 KKGYNAHILLNKLYQKSYLQTNVNANLVALVHGEPKLLNLKQILSIYLDHQIEVVTRRLK 429 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA+D+ H+L GL IAV+N+DEVV+II+ S N A+ L +R +N Sbjct: 430 FDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKR-FN----------- 477 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ QT+AIL++ L RLTGL + + E++ L EI IL SR Sbjct: 478 --------------LSDRQTKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKGILESR 523 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L+ +I EL ++D RRT+I E + + DED I ++V+T S GYVKR+ L Sbjct: 524 EALINLIIDELSEIRDRFGDERRTQIDEFTVSSISDEDLIPVNNIVITTSVKGYVKRMKL 583 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y Q RGG G S + D+D ++ + +THT ++ F++LG VY+ + ++P GS Q+ Sbjct: 584 EDYNMQNRGGIGVSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQS 643 Query: 614 RGKALINIL-SLN--QGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669 +G INI+ SLN +GE++ +++ E +N + ++V T+ G +++ LS++ I Sbjct: 644 KGTPFINIIPSLNEKEGEKVVSLLSVDE----YNDDHFLVTITEKGVIKKTALSEYESIR 699 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +GK A +L D +++ T EN+IL+ + V+F +R + RNS GVRGI L Sbjct: 700 SNGKNAFRLKEDDHLVNAFIVTDENEILIASNGKNVVKFSSLDLRPLS-RNSQGVRGIRL 758 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + +VI+ A +D D Sbjct: 759 DENKKVIA------ASSDLD---------------------------------------- 772 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +FIL++ KGFGK T S +FR+ R GKG+ A + K G L+ VN Sbjct: 773 -------GEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAINADK---AGDLIFAKFVNK 822 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ND+ ++++ GT IR+ ++++ + SRATKGV I + +++ +++VE ++ E Sbjct: 823 NDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEE 874 >gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 357/890 (40%), Positives = 528/890 (59%), Gaps = 87/890 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + + Y K A G Sbjct: 24 VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGA 83 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ + A Sbjct: 84 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAV 143 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+D+ PN+D + +EP VL R+PN+LVNG GIAVGMATNIP HNL EV+D Sbjct: 144 EMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVID 203 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 GC+A ID+PDIDL LME I+GPDFPT +I+GR+GI+ AYATGRG I +RG + IE+T Sbjct: 204 GCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIMGRSGIRAAYATGRGKITLRGRATIEETK 263 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 R QI++TEIPY VNKA ++E +A+LV+EKRI I L DE++R+G R+V+++++ A+A Sbjct: 264 NGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANA 323 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 VILNQLY+YT LQ V M+A++ P+ TL +L+ +V F++EVV RRT+Y L KA Sbjct: 324 QVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKA 383 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++RAH+L GL A +DE++ IR + + + D Sbjct: 384 KERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDD-------------- 429 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 Q AI++L+L RL GL I EL SL +I+ IL+ +R+L I Sbjct: 430 -----------PQADAIVKLQLGRLAGLEILKIEEELASLQAKIENWEAILADDARVLAI 478 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 +K+ELL +K RRT I +++ ED I E V T++ GY+KR + Y+AQR Sbjct: 479 VKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQR 538 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG+G SG+ ++ED V ++F+ STH VLF + G +++ K + + GS ++G ++N Sbjct: 539 RGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVN 598 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L L +GE++T M E+ +V TK G ++R L + I +SG I + L+ Sbjct: 599 LLQLAEGEKVTN-MICQSKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE 657 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 D + + + +++ T+ GQ +RF + R GR+ GVR I LA+GD+V+ + I Sbjct: 658 GDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPM-GRSGHGVRAIRLAEGDEVVGVCI 716 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 C+E + Sbjct: 717 -------------------------------------------------CRE----GGTV 723 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTV+E G G+R+ +RI+ R GKGIR D +K + AV V+D D ++L S +G Sbjct: 724 LTVTENGKGRRSDIDTYRITARGGKGIRNYDAAK----DKVAAVKIVDDVDDVLLSSQEG 779 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +IR+ NEI + SR GV + ++++V+ + R DEA++ + Sbjct: 780 IIIRLHANEIPLQSRYGSGVRVMRLGENDKVMVLARTDHD---DEAQTEQ 826 Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust. Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 13/216 (6%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 V V+ G +KR PL Y R+ G G+ + + D + + S H ++ + G Sbjct: 624 FVTMVTKQGLIKRTPLEQYANIRK--SGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQ 681 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 + + P R + + L +G+ + + E + V+ T++G Sbjct: 682 AIR---FNEADARPMGRSGHGVRAIRLAEGDEVVGVCICREGGT------VLTVTENGKG 732 Query: 658 RRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 RR+ + + R GK D+ +D++ +V+ +D+LL+++ G +R + I Sbjct: 733 RRSDIDTYRITARGGKGIRNYDAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEI-PL 791 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 R GVR + L + D+V+ +A H D E+I Sbjct: 792 QSRYGSGVRVMRLGENDKVMVLARTDHDDEAQTEQI 827 >gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307] gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307] Length = 859 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 371/902 (41%), Positives = 536/902 (59%), Gaps = 75/902 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Y KCA Sbjct: 14 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPYRKCA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R LI+G GNFGSVD DPPAA RYTE RL Sbjct: 74 RVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYTESRL 133 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 134 QSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNIPPHN 193 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+I +P I+ LM II GPDFPTG ILGR GI+ Y GRGSI +RGV+ Sbjct: 194 LGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRETYTGGRGSITMRGVA 253 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE K DR+ +++TE+PYQ NKA+++E+IAELV +K++ IAD+RDESDR G R+ Sbjct: 254 AIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDGMRI 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL+R A V+LN LY+ T LQ+ FS +AL +P L +L+ F+ FR E + Sbjct: 314 VIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLKRMLEVFLDFRIETIE 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKYLL KA +R H+L GL +A+ +LD ++++IR + + TAR+ Sbjct: 374 RRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQ--------------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++D LSE+Q AIL+++L RLT L D IR E L +I + DI Sbjct: 419 -GLVNDHG----------LSEIQADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+L II++EL +K+ +TPRRT I++ +ED D I E VV ++ GY+KR Sbjct: 468 LQRRERVLSIIEEELRQLKERHNTPRRTEILDLEGGLEDIDLIANERSVVLLTENGYLKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + + RG +G++G + E+ V + H S+L FS G VY +R+PI S Sbjct: 528 MPVSEFESTSRGTRGKAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIAS 587 Query: 611 PQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A+G ++ +L + + E+IT+++ F ED + +V T G ++R LS F Sbjct: 588 RAAKGTPVVQLLPIPREEQITSLLAVSAFEED------VQLVMLTTGGFIKRTPLSAFSN 641 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725 I +G IA+ L+ D + V + +L+ + G + F I+ +R GR + GVR Sbjct: 642 IRANGLIAINLEDADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDLRPL-GRTARGVR 700 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 ++L GD ++SM ++ A+ +RI S G++EE S Sbjct: 701 AMALRDGDSLVSMDVL---PAELADRIAAAGEAS------DGESEEAASSDG-------- 743 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++L + G GKR FR+ R+G G+R + + ALV + Sbjct: 744 ------------PWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKFRRDGD--ALVGLC 789 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVD 904 + ++++LVS++G ++R+ + I SRA GV + K +R+ V + E+E D Sbjct: 790 VMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAEVVLVPPEAETDD 849 Query: 905 EA 906 E+ Sbjct: 850 ES 851 >gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917] gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917] Length = 891 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 361/892 (40%), Positives = 537/892 (60%), Gaps = 66/892 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+ + LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G +A+I+NP++D +ALM II GPDFPTG ILGR+GI+ Y TGRGS+ Sbjct: 194 IPPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253 Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ I+D+RDESDR Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L +R Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LSEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL R R+ G+I++EL ++D RRT I++ ++D D I E VV ++ Sbjct: 468 DYKDILGRRERVFGLIQEELTQLRDRYPIERRTEILDLAGGLDDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +GR+G + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVSEFEATSRGTRGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSD 664 +P S A+G ++ +L + + E IT+++ S++N + ++ T+ G ++R +LS Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREELITSLLAV----SAFNDDTDLLMLTQGGYIKRTRLSA 643 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722 F I +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + Sbjct: 644 FSNIRSNGLIAIGLEDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPL-GRTAR 702 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR ++L +GD ++SM ++ AD R+ G E + ++ E Sbjct: 703 GVRSMNLREGDALVSMDVLPVELAD---RVAQSSD--------DGGEAEADAEDGPTASE 751 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G ++L S G GKR FR+ R+G G+RA +++ LV Sbjct: 752 G--------------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDV--LV 795 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + + ++++LVS+KG ++R + I SRA GV + K +R+ V Sbjct: 796 GLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEV 847 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDL 580 E D ED V+ S G KRVP++ +R Q+R G G + R D D + L Sbjct: 738 EAEADAEDGPTASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRTDSDVLVGL 797 Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---PFP 637 ++ VL S G + + +P Q+R + + L++G+R++ ++ P P Sbjct: 798 RVLGAGEEVLLVSEKGVIVRTSADAIP---QQSRAATGVRLQRLDKGDRLSEVVLVPPAP 854 Query: 638 EDE 640 E++ Sbjct: 855 EED 857 >gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011] gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9] Length = 920 Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 526/904 (58%), Gaps = 97/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + DEM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 50 VQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 109 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR+ Sbjct: 110 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 169 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 170 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNM 229 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+P+ LDAL+E I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 230 REVADGVHWALDHPEASREELLDALIERIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 289 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 290 AVVNTEEIKG-RMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSGRTGQRL 348 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + +V+ Sbjct: 349 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDVIA 408 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ +DEV+ +IR S E AR LM DL Sbjct: 409 RRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLM----------DL 458 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + D VQ AIL ++L RL L R I +E + L I + DI Sbjct: 459 LGVDD----------------VQADAILAMQLRRLAALERQKILDEHDELMRRIADYADI 502 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 503 LAKPERQRKIVGDELDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFIKR 562 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +RD+D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 563 TKADEYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGS 622 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P+ E + Y+V AT+ G V++ +LS++ + Sbjct: 623 RDSKGQHVANLLQFTPDESIQTVLSIPDYEVA---DYLVLATRSGKVKKTRLSEYDSPRQ 679 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C +DI+L +KLG ++F ++ GR + G Sbjct: 680 GGLIAVRLMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPMGRQTAG 739 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ GD++++M + I G+T Sbjct: 740 VQGMKFRAGDELLAMDV------------------------IWGET-------------- 761 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++ +L V+ +GF KRT+ ++R+ R+G G++A ++ +E G LV Sbjct: 762 -------------DKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLT--DERGTLVG 806 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V++ DQI+ + G +IR V+E+++ R T+GV + + ++S+ R E+E Sbjct: 807 AVVVSEEDQIMAIMKSGKVIRSNVSEVKLTGRTTQGVTLAKPDAGDEIISIARNAETE-- 864 Query: 904 DEAE 907 DEA+ Sbjct: 865 DEAD 868 >gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f] gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f] Length = 816 Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust. Identities = 362/878 (41%), Positives = 513/878 (58%), Gaps = 89/878 (10%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 MQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+R+ G+VMG Sbjct: 1 MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++AIYD L R+AQ WSLR L++G GNFGS DPPAA RYTE R+ A +L Sbjct: 61 YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ ++TVDF PNYDG EP+VL +R+PN+LVNG GGIAVGMATNIP HNL EV G Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180 Query: 205 VIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +D+PD L+AL+ I++GPDFPT +I+GR GI++AY TGRGSI +R V ++E+ Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIVGRNGIEDAYRTGRGSIRMRAVVNVEENK 240 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319 G R Q+VVTE+PYQVN + EKIAELVR+ +I I+D+RDE S R G R+VI+LKR A Sbjct: 241 G-RTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDAV 299 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 A V+LN LY++T LQ F VNM+A+ P L I+ +V + EV+VRRT+Y L K Sbjct: 300 AKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQIISYYVEHQIEVIVRRTRYQLRK 359 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 AR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R Sbjct: 360 ARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMER------------------- 400 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 LSE+Q AIL+++L RL L R I +E L ++ E IL+S +R Sbjct: 401 -------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVSELEAILASPARQRE 453 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 II QEL V ++ RRTR+V DM ED I RED+VVTV+ GY KR +YR+Q Sbjct: 454 IIGQELAEVVEKYGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQ 513 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 +RGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + A+G+ + Sbjct: 514 KRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 573 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 NIL+ +Q ERI +M + E++ Y+V ATK G ++ L+DF G +A+ L Sbjct: 574 NILAFSQDERIAEVMAIQDYEAAP---YLVLATKRGLCKKTALTDFDSNRAGGLVAINLR 630 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISM 738 DE++S +D+LL ++ Q +RF ++ GR + GV G+ D+++SM Sbjct: 631 DDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDDSDELLSM 690 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +V+ D++ + Sbjct: 691 DVVV----------------------------------PDTTAD---------------- 700 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L + G+ KRT ++ + R GKG+ + ++ G LV V +DQ+ ++ Sbjct: 701 -LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVAPDDQLYAITS 757 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G ++R ++R A R T GV + +VV V R Sbjct: 758 NGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVAR 795 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/236 (23%), Positives = 111/236 (47%), Gaps = 23/236 (9%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + LD DE++++ + D+ GQ + RF +S I+ A + + +R ++ + + Sbjct: 372 IALDHLDEVIALIRNAESADV----ARGQLMERFSLSEIQATAILD-MQLRRLAALERQR 426 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEE 788 +I A L A E I + + QR +I + E+ D EG++S Sbjct: 427 IIDEAAELRAKVSELEAI--LASPARQREIIGQELAEVVEKYGDERRTRLVPFEGDMS-- 482 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L +E ++TV+ G+ KRT + +R R GKG++ + + E + F Sbjct: 483 -VEDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQG---AALREDDIVEHFFVTT 538 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 + ++ ++KG + R +E+ +R+ KG I + ++DER+ V I++ E Sbjct: 539 THHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDYE 594 >gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] Length = 838 Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust. Identities = 344/850 (40%), Positives = 525/850 (61%), Gaps = 44/850 (5%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 + I+ + + G+ + + EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Sbjct: 4 KEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYD 63 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G+ NK + K AR G+V+GKYHPHG++A+YDA+ R+AQD+++R+ L++G GNFGS+DG Sbjct: 64 SGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGSIDG 123 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE RL K A LL DLGK+TVD+ PNYD S QEP VL AR+PN+LVNG GI Sbjct: 124 DSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGSNGI 183 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP HNLGE +D ++DNPD+ + LME++ GPDFPTG VI GR GI +AY Sbjct: 184 AVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIISAYE 243 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGS+ I+ I++ + I++TEIPYQVN++ +++KI ELVR+K++ +I+++ D Sbjct: 244 TGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNVHDG 303 Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 +DR ++IELK+ A V+LN+L+++T LQ + V M+AL P +L IL + Sbjct: 304 ADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREILHYY 363 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + +E+V+ RRT++ L KA RAH++ GL IA+ ++DEV+ IIR S + A +L +R Sbjct: 364 ILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLSER- 422 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 LSE Q AIL+++L RLTGL R+ ++ EL L Sbjct: 423 -------------------------FGLSEAQCTAILQMQLRRLTGLEREKLQEELAELK 457 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I IL+ + +IK+EL +K +TPRRTRI D++ ED I E+MVVT Sbjct: 458 EKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEMVVT 517 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +++ GY+KR+P++ YR Q+RGGKG GV +++ DFV LFI STH +LFFSS G VY++ Sbjct: 518 MTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRK 577 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 KV+ +P ARG A++N+L L++GE I + FPEDE +++F TK G V+ Sbjct: 578 KVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKEFPEDE------FLMFGTKEGMVK 631 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +S + + + G IA+ L DE+++V+ + + + G+ + + S +R G Sbjct: 632 KTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAM-G 690 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLISGDTEEITSLK 776 R+++GVRG+++ G V+ + I + ER Y K + + + Sbjct: 691 RDTMGVRGMTVPDGVHVLGLEIASPGKEIFVITER-GYGKRTPVEEYPLHHRGGQGVFTI 749 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 ++ +G ++ ++ E ++ +SE+G RTS D R+ +G++ +V + Sbjct: 750 TMTAKKGQLA---AMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKD 806 Query: 837 EIGALVAVFP 846 + A VA+ P Sbjct: 807 RVSA-VAIAP 815 >gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG'] Length = 816 Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust. Identities = 361/878 (41%), Positives = 521/878 (59%), Gaps = 86/878 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV Y K AR Sbjct: 8 TVVPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSAR 67 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG+ A+YD R+ Q ++LR LI+GQGNFGSVDGD PAA RYTE RL+ Sbjct: 68 IVGDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLE 127 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + ++ +L ++TV+F PNYD S QEP VL AR P +L+NG GIAVGMATNIP HN+ Sbjct: 128 ALSEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNIT 187 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 E++D +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A TGRGSIV+RGV+ I Sbjct: 188 EIIDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVADI 247 Query: 257 EK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ T DR I++ EIPYQVNKA ++E+IAELVRE + IAD+RDESDR G RVVI+LK Sbjct: 248 EESTRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+ V+LN+LY T LQ+ F N VAL +P +L L F++FR++VV RRT + Sbjct: 308 RDANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALAHFLSFRQDVVTRRTLF 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KARDR H+L GL A+ +D+++ +IR S +P+ AR L+++ Sbjct: 368 RLRKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE+Q RAIL++RL RLT L RD I E + + I +IL SRS Sbjct: 413 -----------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRVLILGLEEILGSRS 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 RL+ +I++E +++++ R+TRIV ++ E I + +T+++ GY+KRV Sbjct: 462 RLMAVIREEFMALRENYGDARKTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDA 521 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y QRRGGKGRSGV ++++D V + H ++LFF+ +G VY+ K +P ARG Sbjct: 522 YPTQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARG 581 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K + L L E++T ++ E + +VF T +G ++R LS + I +SG IA Sbjct: 582 KPIRGFLPLAPEEKVTRMLNVASFEGERS---LVFVTVNGIIKRTALSAYSSIRQSGIIA 638 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L D + V ++ +L+ T+ G + FPI + GR + GVR I L + D+V Sbjct: 639 LTLREGDRLAQVLVAEADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREEDRV 697 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 IV D Sbjct: 698 ADAEIVTETDP------------------------------------------------- 708 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 + V+EKG+GKR FR +R G G++ + ++ +IGA+V++ + D + + Sbjct: 709 ----VAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAE--KIGAVVSLVKAGNTDDLTI 762 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 ++ KG RV NE+R R+ +GV++ A D+ +VS Sbjct: 763 ITSKGVTNRVQANELRTMGRSAQGVIVMRLADDDTIVS 800 >gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] Length = 882 Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust. Identities = 349/901 (38%), Positives = 531/901 (58%), Gaps = 93/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + M+ SY+ YA++VI RA+PD+RDGLKPV RR+L+ M+++ +K + KCA Sbjct: 18 IQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNTPDKPHRKCA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ WS+R +L++G GNFGS+DGD AA RYTE RL Sbjct: 78 RIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSIDGDGAAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + ++ D+ KDTVDF PN+D + +EPVVL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 138 SKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTTGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ CV +IDN D+ ++ I++GPDFPTG +ILGR GI+ AY TGRG I + Sbjct: 198 REVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIILGRAGIEEAYRTGRGKIKV 257 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + +I+V+EIPY VNKA M+EKIA++V++KR+ I LRDE+ R+G RV Sbjct: 258 RAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDGITALRDETSREGMRV 317 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIEL++ + +V+LN+LY+ T LQ + V M+AL G +P +L +L ++ +E+VV Sbjct: 318 VIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALVGNQPRIMSLKEVLDHYILHQEDVVT 377 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ LNKA++R H+L GL A+ N+DEV++IIR S + A+ +LM Sbjct: 378 RRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKEQLM------------ 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G LSE Q +AI+++RL LTGL R+ + E L +I I Sbjct: 426 --------------GRFALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGI 471 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ +LL ++K+E+ + D+ RRT+I D+ ED I ++T + GY+KR Sbjct: 472 LADHKKLLTVVKEEMQEIADKYGDDRRTQIGFDDDDISAEDLIPVTHPIITFTKFGYIKR 531 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +RAQ RGGKG G+ +D++ +L +H + FF++ G VY+ K + +P S Sbjct: 532 MSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNKGRVYRLKAYEIPEAS 591 Query: 611 PQARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARG A++N+L L E IT+++P EDE Y+ AT+ G V++ +L ++ I Sbjct: 592 RTARGTAIVNLLQLMPDETITSMIPVVPGEDEDK----YLFMATQRGIVKKTRLREYENI 647 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +SG A+ L D ++ V+ ++++L T+ GQCVRF S +R GR+++GV GI+ Sbjct: 648 RKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVR-GTGRSTMGVIGIN 706 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D VI+M + ++ Sbjct: 707 LSDQDCVIAMQLASQGES------------------------------------------ 724 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ VS++G GK T + +F +R GKG++ +++ + G LV V V+ Sbjct: 725 -----------LVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE--KTGDLVGVKSVD 771 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++Q++L++ GT+IR+ + + + R T GV + D+ V S+ ++ ++ E E Sbjct: 772 KDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASISVVQREDLPLEDED 831 Query: 909 T 909 T Sbjct: 832 T 832 >gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX] gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX] Length = 848 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 362/900 (40%), Positives = 519/900 (57%), Gaps = 90/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M G ++ Y KCA Sbjct: 18 IEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLYAMYDSGYRPDRGYFKCA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIY+ L R+AQ W++R+ L++G GNFGS DP AA RYTEC+L Sbjct: 78 RVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFGSPGNDPAAAMRYTECKL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ K+TVDFRPNYDG QEPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 138 APLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +D+PD LDAL+E I+GPDFPT I+GR GI+ Y TGRGSI +R Sbjct: 198 REVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIVGRRGIEETYRTGRGSITMR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V IE+ R+ +VVTE+PYQVN + KIAELV+E +I IAD++DES R G R+ Sbjct: 258 AVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKISGIADVKDESSGRTGQRL 317 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P L +++ +VA + EV+V Sbjct: 318 VIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQMIRHWVAHQIEVIV 377 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +RAH+L L A+ +DEV+ +IR S + + A+ LM+ Sbjct: 378 RRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDAKNGLME----------- 426 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + +VQ RAIL+++L +L L R + +E + L +I + +I Sbjct: 427 ---------------LLAIDDVQARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEI 471 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S R II+ EL + ++ RRT IV DM ED I ED+VVT++ GY KR Sbjct: 472 LESPERQRRIIRDELAEIVEKYGDDRRTEIVPYEGDMRMEDFIAEEDIVVTITRGGYAKR 531 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 L YRAQ+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP + Sbjct: 532 TRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPELA 591 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG + N++ E I ++ + +++ Y+V AT+ G V++ KL++F Sbjct: 592 RDSRGHHVANLVPFLPDEEIAQVLALRDYDAA---PYLVLATRSGLVKKTKLAEFDSARS 648 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 SG IA+ L DE+++ +D+LL + Q +RFP S ++R GR + GV G+ Sbjct: 649 SGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDDSLRPM-GRATSGVIGMR 707 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 A+GD ++SM ++ + D Sbjct: 708 FAEGDYLLSMDVIREGEGATD--------------------------------------- 728 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L +E G+ KRT + + + R GKG+ + + G LV V+ Sbjct: 729 -----------VLVATEGGYAKRTPADQYPVQKRGGKGVLTARI--VESRGKLVGALMVD 775 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+I+ ++ G +IR EI+ + RAT GV + +K VV++ R E + D+AE+ Sbjct: 776 PEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKGNHVVAIARNTEG-MGDDAEN 834 >gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum] Length = 854 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 373/869 (42%), Positives = 514/869 (59%), Gaps = 86/869 (9%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 T+VSI +E++ +YL Y+++VI+GRA+PD RDGLKPV RR+LF M +MGV Y K AR Sbjct: 13 TTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSAR 72 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG+ A+YD R+ Q ++LR LI+GQGNFGSVDGD PAA RYTE RL Sbjct: 73 IVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLT 132 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 + A ++ +L ++TVD+ PNYD S +EP VL A P +L+NG GIAVGMATNIP HN+ Sbjct: 133 RLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNIT 192 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EV++ + ++DNP+ LM + GPDFPTG VILGR+GI++AY TGRGSIV+RGV + Sbjct: 193 EVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYRTGRGSIVMRGVVEV 252 Query: 257 E-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E T DR+ +V+ EIPY VNKA ++EKIAELVREK+I IAD+RDESDR G R+V+ELK Sbjct: 253 EDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVVELK 312 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +I+NQL+ T LQS F N V++ +PE +L L+ F+ FR++VV RRT + Sbjct: 313 REAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVFLGFRKDVVTRRTLF 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KAR+R H+L GL A+ +DE++ +IR S +PE AR L+ Sbjct: 373 RLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVS---------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE+Q +AIL+LRL RLTGL R+ I E + I IL+SR Sbjct: 417 ----------TFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASRE 466 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LL +I+QE + + RRT IV ++ E I E +VT+S+ GY+KR+P +V Sbjct: 467 ALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAV 526 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 QRRGGKGR GV ++++D + H ++LFF+ LG VY+ K + LP ARG Sbjct: 527 LPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARG 586 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K L+++LSL+ ER+ I+P E +NL ++F T G ++ +LS++ I + G IA Sbjct: 587 KHLLSLLSLSPDERVAAILPVRSFEG--DNL-LLFGTVKGYFKKTRLSEYANIRQGGLIA 643 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 L+ D + V + +L+ T+ G +RF IR GR + GVR I L+ D V Sbjct: 644 TVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRP-TGRATRGVRAIRLSPDDSV 702 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S V +D Sbjct: 703 VSFEEVSDSD-------------------------------------------------- 712 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +L +EKGFGKR + FR+ R GKG+R V+ E GA+VA+ V + D I + Sbjct: 713 ---LLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTP--ETGAVVAILKVTERDDIDV 767 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFS 884 V+D G +IR+P EIR R KGV + S Sbjct: 768 VTDTGRVIRIPSEEIRKVGRGAKGVKLVS 796 Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 7/108 (6%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 + +L + KG+ K+T ++ +N G+ AT + + + + ++ + P D+ +LV Sbjct: 613 DNLLLFGTVKGYFKKTRLSEY--ANIRQGGLIATVLEEGDRLARVLVLHP----DRRLLV 666 Query: 857 SDKGTL-IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + +G + IR + IR RAT+GV + D+ VVS E + +S+++ Sbjct: 667 ATRGGMSIRFEADNIRPTGRATRGVRAIRLSPDDSVVSFEEVSDSDLL 714 >gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] Length = 813 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 348/892 (39%), Positives = 526/892 (58%), Gaps = 83/892 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M + +N+ Y K AR+ Sbjct: 5 IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG+ ++YDAL RMAQD+S+R +++GQGNFGS+DGD AA RYTE R+ + Sbjct: 65 GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L D+ K+TVDFRPNYD S +EP VL + PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 DG + ++D P + ++ +++GPDFPTGA I G G+ AY TGRG+I IRG + +E+ Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGKGLTEAYTTGRGTIKIRGRAEVEE 244 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 D +V+ EIPY +NK++++EKIA L+ + RI ++DLRDESDR+G R+V++LK+G Sbjct: 245 RKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKGV 304 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L++ F +NM+ + +P + +L+ F+ R +V++RRT++ L Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFDLR 364 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 K+ +RAH+L GL IA+ N+DEVV IIR S N AR LM+R Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMER------------------ 406 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q +AIL++RL RLT L R + +E N L I+ IL + L Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLR 458 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 G+I+ E+ ++D TPR+T I+E L + D I ED+V+T+S GY+KR + Y+ Sbjct: 459 GVIRDEIKEIQDRYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 518 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG +GV +DFV + H +L F++LG ++ V ++P G A+G + Sbjct: 519 QKRGGKGIAGVATAGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L +++ E + T + E Y +F T+ G V+R + +G IA+ L Sbjct: 579 ANLLPMDKEEFVATALSIREFSEER---YFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGL 635 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 DE+L+V+ E ++LL T+ G RF IS +R GR + GV+GI+L KG+ ++ Sbjct: 636 KENDELLTVKEIDDETEVLLATQQGLSNRFHISGVRP-TGRGAAGVKGIAL-KGNDRVAA 693 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +V ITS+ Sbjct: 694 GVV------------------------------ITSVSRSE------------------- 704 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +LTVS G+GKRTS + I NR G G+ V+ + G ++ V D+D+++L++ Sbjct: 705 -VLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTP--KTGQVIGAVMVGDDDELLLLTS 761 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 +IR+ V+ I RAT+GV++ +++ V+ + + S++ A S E Sbjct: 762 ANKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLDRCAPSGE 813 >gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 731 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 321/734 (43%), Positives = 473/734 (64%), Gaps = 32/734 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ I ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G +K Y Sbjct: 3 EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K ++DDL K+TVDF PN+D + EP V+ R PN+LVNG GIAVGMATN+P Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+D C A IDN +I ++ LM ++ PDFPTG I G +G++ Y TGRG +V+R Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T ++IVVTEIPY VNKA +++ IA+LV +KRI I++ DESDR G R+V Sbjct: 243 AKAEIE-TGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 I++KR A+A V+LN+LY+ T+LQ+ F VN VAL +P+ L ++K FV R EVV+R Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L KA++RAH+L GL IA N+DEV+RIIR + P A L++R Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E+Q+RAI+E+RL +LTGL +D + E + +I IL Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + ++K ELL VK + RR+ IV + ED + M++T+SH+GY+KR Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ +RAQ RGG G G RD DFV ++ + H +++FF+ G Y KV+ +P G+ Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N+L+++ + +T + +D N+ YV+F TK G +++ L + + Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 ++G A+ + D ++ V N+I++ + G+ +RF +A+RV GR + GVRGI+L Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694 Query: 730 AKG--DQVISMAIV 741 D+VI M + Sbjct: 695 DNDGQDEVIGMICI 708 Score = 44.7 bits (104), Expect = 0.074, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 18/170 (10%) Query: 742 LHADADYDE---RICYMKHMSAQ----RRLISGDTEEITSLKND---SSVEGNISEERCQ 791 LHA+ Y+E +I Y++ + A R+++ + E+ + D S + + E + Sbjct: 437 LHAE--YEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPE 494 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + +Q I+T+S G+ KRT +FR NR G G + T+ + + ++P ++ Sbjct: 495 DFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVGSKGTETRDADFVE---HIYPATMHN 551 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIR 898 ++ + KG + V EI ++ +KG I + D+ V + R++ Sbjct: 552 TMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYLRVK 601 >gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] Length = 985 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 363/918 (39%), Positives = 536/918 (58%), Gaps = 80/918 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K A Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR L++GQGNFGSVDGD AA RYTE R+ Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K H +L DL KDTVD+ NYDGS + P V+ R PN+L+NG GIAVGMATN+ HN+ Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNM 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ C+A DN +I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG H Sbjct: 186 TEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYH 245 Query: 256 IEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ R IV TEIPYQVNKA ++E+IAELV+EK++ I++LRDESD+ G R+ I+L Sbjct: 246 FEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +A+V++N L+ T L++ FS+NMV L+ +P+ L I+ AF+ R+EVV RRT Sbjct: 306 KRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTM 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KAR+R H+L GL +A+AN+D+++ I+ S NP AR L+ W A + +++ Sbjct: 366 YELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLERA 425 Query: 435 ------------DDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 +D S G D +Y LS Q AILELRL RLTGL +D + E + + Sbjct: 426 GSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSEIL 485 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+ + L+ +IK+EL+ V + RRT IVE +D ED I E +V+T Sbjct: 486 GQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVVLT 545 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 VS GY K PLS Y AQRRGG+G+S M+++DF+ L + S H +VL F+++G VY+ Sbjct: 546 VSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVYRL 605 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP-------FPEDESSWNNLYVVFATKH 654 +V+ +P S +RG+ +IN+L L+ E IT I+P F E +++ N K Sbjct: 606 RVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTNTVK- 664 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ-CVRFPISAI 713 ++ N + +AM D+ DE LS E L T+L Q CV ++ + Sbjct: 665 --LQDNPVISVHLPELETALAMLDDNADE-LSAE---------LRTQLKQLCVELAVTDL 712 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 D I + A++ +M S + + + E+ + Sbjct: 713 -------------------DDEIIIEFAQQAESVRKNYYVFMATASGTVKRV--ELEQFS 751 Query: 774 SLKNDSSVEGNISEERCQ---ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +++++ ++EE + EQ I+ S +G R + D R RS KG+R Sbjct: 752 NVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGM 811 Query: 831 DVS---------------------KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 V+ N + +V++ V + +++ S G R PV++ Sbjct: 812 RVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDD 871 Query: 870 IRIASRATKGVVIFSTAK 887 R KGV+ T++ Sbjct: 872 FPTKKRGGKGVIAIKTSE 889 Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 113/255 (44%), Gaps = 32/255 (12%) Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699 ES N YV AT G V+R +L F + +G A++L+ D ++ V E I+L Sbjct: 725 ESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLF 784 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759 + G+ +RF + +R GR++ GVRG+ +A Q A+ D S Sbjct: 785 SNEGKAIRFAETDVRAM-GRSAKGVRGMRVALAAQ---------AEDTEDTDTDSEDEDS 834 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 + ++S I SL V E C S G+GKRT DF Sbjct: 835 SDSNVVS----RIVSL----VVVPETGEVLC------------ASANGYGKRTPVDDFPT 874 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R GKG+ A S+ N G LV +++ +++L+SD GTL+R E+ R +G Sbjct: 875 KKRGGKGVIAIKTSERN--GELVGAVAIDETKELMLISDGGTLVRTRAAEVAQTGRNAQG 932 Query: 880 VVIFSTAKDERVVSV 894 V + + E +V V Sbjct: 933 VRLIRLGEGETLVGV 947 >gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1] gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1] Length = 826 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 351/888 (39%), Positives = 536/888 (60%), Gaps = 87/888 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 24 VKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKSA 83 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD AA RYTE R+ Sbjct: 84 RIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEARM 143 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + LL D+ KDTVDF NYD + +EP VL +R PN+L+NG GIAVGMAT+IP H L Sbjct: 144 ATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHRL 203 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++ + V++NP L +++++ GPDFPTG +I G+ GI AY++GRG I +R + Sbjct: 204 DEIIEALIFVLENPQASLSDILDLVPGPDFPTGGIIHGKQGILEAYSSGRGRIRVRAKTR 263 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ G RE I++ E+PYQ NKA ++E+I+EL R+K + I+++RDESDR+G RVVI+LK Sbjct: 264 LERIEG-RESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDLK 322 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A ++LNQLY+ + ++S FS+ ++A++ +P F L+ +LK F+ R+ +V+RRT Y Sbjct: 323 REANAQIVLNQLYKSSGMESTFSIILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRRTIY 382 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H+L GL +A+ N + V+ +I+ S + +A+ L+Q Sbjct: 383 ELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQ---------------- 426 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS+ Q++AILE+RL RLTGL ++ I E L I+E IL Sbjct: 427 ----------AHQLSQEQSKAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHAD 476 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +IK+ELL +K++ T R+T+I E + DED I REDMVVT+SH GY KR+PL + Sbjct: 477 KLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLKI 536 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q+RGGKG+ ++DF+ F +TH +LF + G +Y KV+++P A G Sbjct: 537 YEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIG 596 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KAL+N++ + GE+I I+ P+ + ++VF TK G ++R +LS F ++ R G + Sbjct: 597 KALVNLIDIEPGEKICAILSTPDFSP---DKFLVFFTKKGMIKRTQLSAFGRV-RIGVRS 652 Query: 676 MKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 ++L D +++ + EN ++ + T G C+RF S +R GR ++GV G+ L +GD Sbjct: 653 IELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVRDM-GRTAMGVIGMRLKEGDF 711 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 VI +I L S Q +L Sbjct: 712 VIGASIAL----------------SDQHKL------------------------------ 725 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 LT+S KG GK+T +R+ NR G G+ ++ + G LVA+ V++ ++ Sbjct: 726 ------LTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTP--KTGNLVAIVHVDEGQDLM 777 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 L++ G +IR+P+ IR R GV + S D V + +E+E+ Sbjct: 778 LLTKNGKMIRMPMESIRETGRHASGVKLVSVEGDGVVYANTCPKENEV 825 >gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 870 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 361/884 (40%), Positives = 513/884 (58%), Gaps = 90/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M G ++ Y KCA Sbjct: 27 IEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAMYDGGYRPDRGYFKCA 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYD L R+AQ WS+R+ L++ GNFGS DP AA RYTEC+L Sbjct: 87 RVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSAGNDPAAAMRYTECKL 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ KDTVDFRPNYDG EPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 147 APLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +DNP+ LDAL+ ++GPDFPT +I+G+ GI+ AY TGRGSI +R Sbjct: 207 REVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKRGIEEAYRTGRGSITMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R+ +VVTE+PYQVN + KIA+LV++ +I IAD+RDES R G R+ Sbjct: 267 AVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITGIADVRDESSGRTGQRL 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P L +++ +V + EV+V Sbjct: 327 VIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQMIRHWVKHQVEVIV 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +RAH+L L A+ +DEV+ +IR S + + AR LM DL Sbjct: 387 RRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQARTGLM----------DL 436 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ IDD +Q RAIL+++L +L L R+ + E + L +I + DI Sbjct: 437 LE-IDD---------------IQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S +R II++EL + ++ RRT I+ DM ED I ED+VVT+S GY KR Sbjct: 481 LESDTRQRSIIREELGEIVEKYGDERRTHIIPFEGDMRMEDFIAEEDVVVTISRGGYAKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQ+RGGKG G ++ +D V F+ +TH +L F++ G VY+ K + LP + Sbjct: 541 TRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEAA 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE I IM + E++ Y+V AT+ G V++++L DF Sbjct: 601 RDARGQHVANLLPFQPGEEIAQIMALRDYEAA---PYLVLATREGLVKKSRLEDFDSARA 657 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++ ++D+LL + Q +RFP S ++R GR + GV G+ Sbjct: 658 AGIIAINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRPM-GRATSGVIGMR 716 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D ++SM ++ D D Sbjct: 717 FLEDDYLLSMDVIRPGDGSTD--------------------------------------- 737 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L +E G+ KRT S + + NR GKG+ V + G LV ++ Sbjct: 738 -----------VLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKV--VEARGKLVGALMID 784 Query: 849 DN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 D++ ++ G +IR +E++ + R T GV + + AK ++ Sbjct: 785 PEVDEVFAITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828 Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust. Identities = 54/231 (23%), Positives = 104/231 (45%), Gaps = 28/231 (12%) Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 + +E E D+++T ++ G R I R R GVRG L + D V + Sbjct: 517 MRMEDFIAEEDVVVTISRGGYAKRTRIDNYRA-QKRGGKGVRGAQLKQDDIVQHFFVT-- 573 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE--GNI-----SEERCQELKLK 796 ++ +C+ + Q R+ E+ D+ + N+ EE Q + L+ Sbjct: 574 --TTHNWILCF----TNQGRVYRTKAYELPEAARDARGQHVANLLPFQPGEEIAQIMALR 627 Query: 797 E----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +++ + +G K++ DF + GI A ++ + +E+ A VFP +D Sbjct: 628 DYEAAPYLVLATREGLVKKSRLEDF--DSARAAGIIAINLREGDELIAARLVFP---DDD 682 Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++L+S IR P ++ +R RAT GV+ +D+ ++S++ IR + Sbjct: 683 LLLISSDAQAIRFPASDESLRPMGRATSGVIGMRFLEDDYLLSMDVIRPGD 733 >gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 711 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 337/702 (48%), Positives = 481/702 (68%), Gaps = 7/702 (0%) Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265 ++NP++ D L+E++ GPDFPTG ILGR+GI++A+ATGRGSIV++G +HIE DR+ Sbjct: 6 VNNPEVTFDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQA 65 Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325 IV+ EIPYQVNK ++EKI ELV+EKRI I ++RDESD+ G RVVI+LKR A A ILN Sbjct: 66 IVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEASFILN 125 Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385 Q+ T L+S FSVN + LN +P +L I+ AFV FR+EV++RRT++ L K R++AH Sbjct: 126 QILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRRTEFRLRKTREKAH 185 Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD-IKDLIDLIDDSSYTIGSD 444 + +GL IAV ++DEV++IIR + +P A REL+ + W S+ I +I+LI DS+ + D Sbjct: 186 IYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFL-KD 244 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 G L+E+Q +AIL+++L RLTGL +D + EL+S+ IKE + L S +L+ IK Sbjct: 245 GVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNN 304 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 L K+ PR+T I E D+E ED I +EDMV+TV+ GY+KRV LS YR QRRGGK Sbjct: 305 LQETKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGK 364 Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624 G+ G +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+ P ARG+AL+NI L Sbjct: 365 GKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPL 424 Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 + GE IT IMP P + N +VFAT +GN+RRN L+DF I +GKIA+KLD D++ Sbjct: 425 SDGETITNIMPLPSENDENQN--IVFATAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKL 482 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +SV+ C + + +LL+T LG+ +RF +S +R F RNS GVRGI L K D VISM I+ Sbjct: 483 VSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKNDSVISMTILNGI 542 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + + Y+K + +RL + I S + + I E +L + E+FILT++ Sbjct: 543 GVATETKELYLK-VPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 601 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864 E GFGKRTS+Y++R++NR G GI T++ + G +VA FPV D I+L++DKG LIR Sbjct: 602 ENGFGKRTSAYEYRVTNRGGVGI--TNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIR 659 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 + VNEIRIA R+T+GV +F T E+VVSV +I + + +++ Sbjct: 660 ISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 701 >gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 904 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 360/909 (39%), Positives = 522/909 (57%), Gaps = 97/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KCA Sbjct: 40 IQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCA 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM DL Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM----------DL 448 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E N L I + DI Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F + ++ GR + G Sbjct: 670 GGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ +GD++++M +V D+D D Sbjct: 730 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--E 901 V ++DQI+ + G +IR V+E++ R T+GV K++ ++S+ R E E Sbjct: 797 AVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKDDE 856 Query: 902 IVDEAESTE 910 + ES E Sbjct: 857 SAESGESVE 865 >gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] Length = 825 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 329/734 (44%), Positives = 486/734 (66%), Gaps = 31/734 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV + Sbjct: 3 NQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ K+T+D++ NYD + EP+VL AR P++LVNG GIAVGM T Sbjct: 123 RYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+ G ++ NPD LM++I GPDFPTG VI+GR+GI +AY +G+G++ Sbjct: 183 NIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGNV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R ++IE+ RE+I+VTEIP+ VNKA +++KIAEL R+K I I +RDESDR G Sbjct: 243 VVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E+V Sbjct: 303 RITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQEDV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTK+ L+KA RAH+L GL IA+ ++DE+V IIR S + + A+ L+ R Sbjct: 363 VRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 415 ------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H GY Sbjct: 457 DILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S +R Q RGG+G G+ ++D+DF+ L STH +LFF++ G VY +K + +P Sbjct: 517 IKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L L++GE+I ++ PE N + F TK G V+R + +F Sbjct: 577 EYSRIAKGLPIINLLQLDKGEKIQAMINVPEGHEEGN---LFFITKMGVVKRTSVEEFSN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I SG IA+ L DE+ +V T + +I++ T LG F S +RV GR++ GVRGI Sbjct: 634 IRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVM-GRSAAGVRGI 692 Query: 728 SLAKGDQVISMAIV 741 +L + D VI ++ Sbjct: 693 NLRENDYVIGSEVL 706 >gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941] gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941] Length = 823 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 360/878 (41%), Positives = 521/878 (59%), Gaps = 89/878 (10%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +IT+EM+++YL YA++VI+ RA+PD RDGLKPV RIL+GM MG+ N+ + KCARI G Sbjct: 10 NITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVG 69 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 E++GK HPHG++A+YDAL R+AQ W++R L+EGQGNFGSVDGDPPAA RYTE RL A Sbjct: 70 EILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARLTPIA 129 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG GIAVGMATNIP HNL EV Sbjct: 130 EEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLSEVC 189 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 D +IDNPD ++ L++I+ GPDFPT +ILG GI NAY+TGRG I+IR +HIE+ Sbjct: 190 DAITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAHIEEA 249 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + IVVTE+PYQVNKA + E+IAEL R+++I I D+RDESDR G R+VI LK+ A Sbjct: 250 ARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDAQ 309 Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 +LN LY++T +Q+ F VNM+AL G +P TL +L+ ++ R EV+ RRT++ L Sbjct: 310 PKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRTEFDL 369 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 +KAR RAH+L GL IA+ +LD V+ IR S + + AR LM Sbjct: 370 DKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLMN------------------ 411 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 LSE Q AILE++L RL L R I E + I E DIL++ ++ Sbjct: 412 --------GFALSEAQANAILEMQLGRLAALERQRIEEEYREVIRLIGELEDILANPRKI 463 Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +IKQ+L +K + RRTRI+ E ++ D+D I +++T++ GYVKR VY Sbjct: 464 LHLIKQDLADLKAKYGDARRTRIIPEANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R QRRGG+G G R++D V + +T +LFF+ G VY+ K LP S A+G Sbjct: 524 RTQRRGGRGIRGATTREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRTAKGL 583 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 L+N+++L GE++T+++ P+ E + Y++ AT G ++R + ++ Q+ +G IA+ Sbjct: 584 PLVNLIALEPGEQVTSVLAVPDFEKAE---YLIMATVRGKIKRTSIREYSQVRSNGLIAI 640 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ DE+ V D+LLTT GQ +RF +R GR + GV GI+LA+GD+V+ Sbjct: 641 GLEEGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEGDRVV 699 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 SM +L + Sbjct: 700 SM-----------------------------------------------------DLAQE 706 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 +L V+ G+GKRT ++ + R+ G+ + +E+ V +N + ++ Sbjct: 707 NAALLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPGDEVA---VAHVVRENSLLTII 763 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ G ++R + I + R T+GV I + ++RV ++ Sbjct: 764 TESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAAL 801 >gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001] gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001] Length = 883 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 361/910 (39%), Positives = 547/910 (60%), Gaps = 57/910 (6%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 +D + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 5 TDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTS 64 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+++RL L++G GNFGSVDGDPPAA Sbjct: 65 DRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSVDGDPPAA 124 Query: 128 ERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTE RLQ LL+D+ +TVDF N+DGS QEP V+ AR P +L+NG GIAVGM Sbjct: 125 MRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGSTGIAVGM 184 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL E++DG +A+I +PD++ LM II GPDFPTG ILGR GI+ Y TGRG Sbjct: 185 ATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRETYTTGRG 244 Query: 247 SIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 S+ +RGV+ +E K DR+ I++TE+P+Q NKA+++E+IAELV +K++ I+D+RDE Sbjct: 245 SVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDGISDIRDE 304 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIEL+R A V+LN L++ T LQ+ FS M+AL +P TL +L+ F+ Sbjct: 305 SDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLRKMLEVFL 364 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FR E + RRT++LL KA +R H+L+GL IA+ +LD ++ +IR + + +AR EL+ + Sbjct: 365 EFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARSELVAQ-- 422 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+E+Q AIL+++L RLT L D IR E L Sbjct: 423 ------------------------FGLTEIQADAILQMQLRRLTALEADKIRLEHEDLLA 458 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +I + DIL+ R R+ GII EL ++++ +PRRT I++ +ED D I E VV + Sbjct: 459 KITDYKDILARRERVFGIITDELGAIRNRYLSPRRTEILDLEGGLEDIDLIANERSVVLL 518 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G VY Sbjct: 519 TETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDRGVVYAVP 578 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 +R+PI S A+G ++ +L + + E+IT+++ + +V T G ++R +L Sbjct: 579 AYRVPICSRAAKGTPIVQLLPIPREEQITSLLAV---SAFSEEAMLVMLTSGGYIKRTRL 635 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720 S F I +G IA+ L+ D++ V + +L+ + G + F ++ +R GR Sbjct: 636 SAFSNIRSNGLIAISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEELRPL-GRT 694 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GVR ++L GDQ++SM ++ A+ +R+ + L + EE+ + Sbjct: 695 ARGVRAMNLRAGDQLVSMDVL---SAELADRVASSSDSAG---LEESEPEELVA------ 742 Query: 781 VEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 E +E+ + E ++L S G GKR FR+ R+G G+RA + + Sbjct: 743 -----DEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRRDGD-- 795 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LV + + ++++LVS++G ++R + I SRA GV + +R+V V + Sbjct: 796 TLVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVEVVLVPP 855 Query: 900 SEIVDEAEST 909 + DE ++ Sbjct: 856 AASEDELDAA 865 >gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] Length = 825 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 327/734 (44%), Positives = 486/734 (66%), Gaps = 31/734 (4%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV + Sbjct: 3 NQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPD 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA Sbjct: 63 KPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K A +L D+ K+T+D++ NYD + EP+VL AR P++LVNG GIAVGM T Sbjct: 123 RYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+ G ++ NPD LM++I GPDFPTG VI+GR+GI +AY +G+G++ Sbjct: 183 NIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGNV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R ++IE+ RE+I+VTEIP+ VNKA +++KIAEL R+K I I +RDESDR G Sbjct: 243 VVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGM 302 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +L+ ++ +E+V Sbjct: 303 RITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQEDV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRTK+ L+KA RAH+L GL IA+ ++DE+V IIR S + + A+ L+ R Sbjct: 363 VRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISR-------- 414 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L + Q +AIL++RL RLTGL RD + E L ++I + Sbjct: 415 ------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADYK 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGY 547 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H GY Sbjct: 457 DILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNGY 516 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+P+S +R Q RGG+G G+ ++D+DF+ L STH +LFF++ G VY +K + +P Sbjct: 517 IKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIP 576 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S A+G +IN+L L++GE+I ++ PE N + F TK G V+R + +F Sbjct: 577 EYSRTAKGLPIINLLQLDKGEKIQAMINVPEGHEDGN---LFFITKMGVVKRTSVEEFSN 633 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I SG IA+ L DE+ +V T + +I++ T +G F S +RV GR++ GVRGI Sbjct: 634 IRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHMGYAASFKESDVRVM-GRSAAGVRGI 692 Query: 728 SLAKGDQVISMAIV 741 +L + D V+ ++ Sbjct: 693 NLRENDYVVGSEVL 706 >gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K] gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K] Length = 920 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 349/901 (38%), Positives = 536/901 (59%), Gaps = 87/901 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EEE + ++++ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +N Sbjct: 70 EEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNA 129 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +Y K AR+ G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGS+DGD AA R Sbjct: 130 QYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMR 189 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +++ L KDTVDF PNYDGS +EP VL +R PN+L++G GIAVGMAT Sbjct: 190 YTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATT 249 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D VA+ N +I ++ LM+ I+GPDFPTGA ILG +GI AY TGRG+IV Sbjct: 250 IPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGTSGIITAYETGRGAIV 309 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R SHIE + +I++TEIPY+V K A++EKIA L +EKRI I+++RDE+ R+G R Sbjct: 310 LRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIR 369 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI+LK+ +VILN++ + T+LQ ++ NM+AL +P+ L L ++ + +VV Sbjct: 370 VVIDLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGEPKLLNLKQALDVYLKHQIDVV 429 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L +A+DRAH+L GL IAV+N+DEV+R+IR S N A+ +LM Sbjct: 430 TRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLM----------- 478 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSE+Q +AI+++RL RLT L + ++ELN+L EI + Sbjct: 479 ---------------ASFKLSEIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYEN 523 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL+S +L+ +I EL +K RRT I ++DED I +++ +T+S GYV Sbjct: 524 ILNSHEKLIDLIVSELEEIKARFGDERRTIINTSDYGIIKDEDLIPNKNIAITLSKNGYV 583 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR PL+ +R+Q+RGG G +D V + THT +L F+S VYK + ++P Sbjct: 584 KRTPLTDFRSQKRGGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPE 643 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN +++++ E++ +++ E + Y++ TK+G ++ + + +I Sbjct: 644 LSRQAKGVPFINFINIDKKEKVVSLLSV---EEYFEGTYLLTITKNGIAKKTSIEAYKRI 700 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +GK A+ L DE+ V T E+ +++ G+ V F IR GR + GV + Sbjct: 701 QSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPM-GRTASGVIAMK 759 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L K ++V+ + S EG Sbjct: 760 LDKKERVVGVG---------------------------------------KSSEG----- 775 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++L++ +KGFGK+T +R+S+R+ KG+ + +V K G L V V Sbjct: 776 ---------KYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVKK---AGKLNYVGIVK 823 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++ I ++++G IR +N++ SR TKGV + + + + S+ I +I +E E Sbjct: 824 GYEEAIFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEK 883 Query: 909 T 909 + Sbjct: 884 S 884 >gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a] gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a] Length = 834 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 363/892 (40%), Positives = 519/892 (58%), Gaps = 89/892 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 13 IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYD L R+AQ WSLR L++G GNFGS DPPAA RYTE R+ Sbjct: 73 RVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF PNYDG QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL Sbjct: 133 AALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +D+ + L+AL+ II+GPDFPT +I+GR+GI++AY TGRGSI +R Sbjct: 193 REVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIVGRSGIEDAYRTGRGSIRMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R Q+VVTE+PYQVN + EKIAELVR+ ++ I+D+RDE S R G R+ Sbjct: 253 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR A A V+LN LY++T LQ F VNM+A+ P L +++ +V + +V+V Sbjct: 312 VIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQMIRYYVEHQVDVIV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R Sbjct: 372 RRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMER---------- 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AIL+++L RL L R I +E L I E I Sbjct: 422 ----------------FTLSEIQATAILDMQLRRLAALERQRIIDEAAELRARISELEAI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R II +EL V ++ RRTR+V DM ED I +ED+VVTV+ GY KR Sbjct: 466 LASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQEDVVVTVTRGGYAKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+QRRGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + Sbjct: 526 TKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQA 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + NIL+ +Q ERI ++ + E + Y+V ATK G ++ LSDF Sbjct: 586 RSAKGQHVANILAFSQDERIAEVIALKDYEVAP---YLVLATKRGLCKKTALSDFDSNRA 642 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G +A+ L DE+++ +D+LL ++ Q +RF ++ GR + GV G+ Sbjct: 643 GGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRF 702 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+++SM +V + G T + Sbjct: 703 DAEDELLSMDVV-----------------------VPGTTAD------------------ 721 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + G+ KRT ++ + R GKG+ + ++ G LV V+ Sbjct: 722 ----------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVDP 769 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +DQ+ ++ G ++R ++R A R T GV + +VV V R ++E Sbjct: 770 DDQLYAIASNGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVGVARNADAE 821 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 57/241 (23%), Positives = 114/241 (47%), Gaps = 31/241 (12%) Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + LD DE++S+ + D GQ + RF +S I+ A + + +R ++ + + Sbjct: 393 IALDHLDEVISLIRNAESAD----AARGQLMERFTLSEIQATAILD-MQLRRLAALERQR 447 Query: 735 VISMAIVLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGN 784 +I A L A RI ++ + A QR++I + E+ D EG+ Sbjct: 448 IIDEAAELRA------RISELEAILASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGD 501 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +S ++L +E ++TV+ G+ KRT + +R R GKG++ + + E + Sbjct: 502 MS---IEDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQG---AALREDDIVEHF 555 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 F + ++ ++KG + R +E+ +R+ KG I + ++DER+ V +++ E Sbjct: 556 FVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVIALKDYE 615 Query: 902 I 902 + Sbjct: 616 V 616 >gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] Length = 804 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 350/872 (40%), Positives = 525/872 (60%), Gaps = 91/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K ARI GE Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL K A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL E VD Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H+E Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ + S Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR +Y Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG + + ++D V + + S LF ++LG Y K ++L RG+ + Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L E+I + D N+L +V TK G ++R L +F + G A+K Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636 Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S E + L+ TK+G VRFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S+ ++ D Sbjct: 696 SVDVIPPGD--------------------------------------------------- 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILTV+EKGFGKRT +RI R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR PV+EI + R TKGV + D Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 >gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] Length = 845 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 337/900 (37%), Positives = 540/900 (60%), Gaps = 79/900 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K ++S+SI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++N Y K Sbjct: 6 KEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 ARI G+V+GKYHPHG+ ++YDA+ R+AQ +S+R LI+GQGNFGS+DGD AA RYTE Sbjct: 66 SARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYTEI 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A +L+DL K+TVDF PNYDG+ + P V+ + PN+L+NG GIAVGM TNIP H Sbjct: 126 RMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252 N+ EV+D C+A I++ DI + L++ IRGPDFPT A+I + I +AY TG+G+I +R Sbjct: 186 NIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQVRA 245 Query: 253 VSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 ++ IE +R I++ EIPYQ+NK ++EKI ELV+E++I I ++RDESD+ G RVV Sbjct: 246 LTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR + A+ +LN LY T LQ+ ++NM+AL KP L I+ +F+ +R+E+V++ Sbjct: 306 IELKRESEANFVLNSLYALTRLQTSININMIALLKGKPTLLNLKKIISSFIDYRKEIVIK 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + LN+A+ R L + I++ N+D ++ +I+ + P+ AR L W + LI Sbjct: 366 RTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEE--TLI 423 Query: 432 DLIDDSSYTIGSD--------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 +L D Y+ D +E Q + IL+L+L +LT L ++ + E Sbjct: 424 EL--DRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEY 481 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 SL EI + IL + +RL+ IIK EL+ +K++ RRT+I+E ED I ++ Sbjct: 482 ISLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKK 541 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 ++V +S+ GY+K +S Y Q+RGGKG+S ++++DFV + + TH ++L S+ G Sbjct: 542 VIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGR 601 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 ++ KV++LP S + GK ++N LSL GE+IT+I + Y++ AT G + Sbjct: 602 IFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFKKGN---YILIATLMGLI 658 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ + + +SG I + L+ RDE++++++ + ++I+L T + +RF +++R+ Sbjct: 659 KKISMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVRL-T 717 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR S+GV G+ + K ++++SM I++ D D Sbjct: 718 GRKSMGVMGVKIQKDEKLVSM-IIVEKDKD------------------------------ 746 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 ILT++E G+G RT ++ +R +G+ + N Sbjct: 747 ----------------------ILTITENGYGNRTKESEYLKKSRFIRGVSVIKNDERN- 783 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G +V V DQ+++ ++ G LIR+ V +I + R TKG+++ D+ V + R+ Sbjct: 784 -GKIVGAIQVERKDQVVIFTNYGILIRILVKDISVFKRNTKGIILIRKINDQVVSGIYRV 842 >gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 774 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 346/844 (40%), Positives = 512/844 (60%), Gaps = 85/844 (10%) Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 GM ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFG Sbjct: 1 GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGD AA+RYTE R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG Sbjct: 61 SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIH 180 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TG+GSIV+R + IE T RE+IVVTE PY VNK + E I LV+EKRI I Sbjct: 181 KAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITA 240 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL Sbjct: 241 VRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQIL 300 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 A++ ++EVVVRRT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM Sbjct: 301 DAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM 360 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + LSE QT+AIL++RL RLTGL RD I++E + Sbjct: 361 SK--------------------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYD 394 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537 L I + DIL+ R+ IIK EL VK + RRT ++ G +L +EDED I D Sbjct: 395 DLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESD 454 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +++T+S+ GY+KR+ + AQ+RGG+G G ++D+DFV +L STH +LFF++ G Sbjct: 455 VLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGR 514 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K + +P A+G ++N+L L++ E I T++ D S ++ Y+ F T+HG V Sbjct: 515 VYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIV 572 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 +R + +F I ++G A+ L DE+++V + DI++ TK G VRF SA+R + Sbjct: 573 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 632 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 R + GV+G++L +GD V+ +++ D DE Sbjct: 633 -RIATGVKGVNLREGDTVVGASLI----TDQDE--------------------------- 660 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 +L ++EKG+GKRT + ++ R GKG++ +++ N Sbjct: 661 ----------------------VLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN- 697 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G L + V ++ +++++D G +IR + I RAT GV + +D ++V+ + Sbjct: 698 -GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTV 756 Query: 898 RESE 901 +E Sbjct: 757 AVAE 760 Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 456 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 512 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 513 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 561 >gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4] gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4] Length = 875 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 361/892 (40%), Positives = 516/892 (57%), Gaps = 92/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M G ++ Y Sbjct: 8 EHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSGFRPDRGY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC+R+ G+VMG YHPHG++AIYDAL R+AQ WSLR LI+GQGNFGS DP AA RYT Sbjct: 68 NKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A +L D+ +DTVDFR NYDG QEP VL +R+PN+LVNGG GIAVGMATNIP Sbjct: 128 ESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIP 187 Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV +G V ++NP+ L AL+ I+GPDFPT A+ILG +GI++AY TGRGS Sbjct: 188 PHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSGIEDAYRTGRGS 247 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306 I +R V +E+ + R +VV+E+PYQVN ++E IA LVR+ +I IAD+ DES+ R Sbjct: 248 IRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADIADESNSRS 307 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI +KR A A V+LN L+++T LQ F VNM+AL P L I++ +V + Sbjct: 308 GMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDDVPRTLRLDQIIRHYVKHQV 367 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+VRRT++ L KA +RAH+L GL A+ LDEV+ +IR SP+ + AR LM Sbjct: 368 DVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGLMS------- 420 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + + E+Q AIL+++L RL L R I + L + +EI + Sbjct: 421 -------------------LLEIDEIQATAILDMQLRRLAALERQRIIDTLAEIELEIAD 461 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL R II+ EL+ + D+ RRT+I+ D+ ED I +ED+VVT++ G Sbjct: 462 LKDILEKPERQRSIIRDELMEIVDKYGDDRRTQIIPFDGDVSVEDLIAQEDVVVTITRTG 521 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + L Sbjct: 522 YAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDL 581 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ + N+L+ E+I ++ P E + Y+V ATK G V++ KL+DF Sbjct: 582 PEANRNARGQHVANLLAFQPDEQIAQVIEIPNYEVAP---YLVLATKRGLVKKTKLTDFD 638 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 G IA+ L DE++ E+D+LL + GQ +RF + A+R GR + GV Sbjct: 639 SNRAGGLIAINLREGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEALRPM-GRPTSGV 697 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+ GD+++ I+ +K D Sbjct: 698 LGMRFNDGDELLG----------------------------------ISVVKPD------ 717 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +F+L ++ + KRT D+ + R GKG+ + ++ G LV Sbjct: 718 -------------KFLLVATDGAYAKRTPIEDYPVQGRGGKGVLT--IQHDSKRGRLVGA 762 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V+++D++ ++ G +IR P ++R A R TKGV + + +++V R Sbjct: 763 LIVDEDDELFAITSSGGVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLAVAR 814 Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 15/151 (9%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR +I + EI D +G++S ++L +E ++T++ G+ KRT + Sbjct: 472 QRSIIRDELMEIVDKYGDDRRTQIIPFDGDVS---VEDLIAQEDVVVTITRTGYAKRTKT 528 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + + F + +D I+ ++KG + R ++ A+ Sbjct: 529 DLYRSQKRGGKGVQGATLKQDDIVQHF---FVCSTHDWILFFTNKGRVYRAKAYDLPEAN 585 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902 R +G + + DE++ V I E+ Sbjct: 586 RNARGQHVANLLAFQPDEQIAQVIEIPNYEV 616 >gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] Length = 804 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 350/872 (40%), Positives = 525/872 (60%), Gaps = 91/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K ARI GE Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL K A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL E VD Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H+E Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ + S Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR +Y Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG + + ++D V + + S LF ++LG Y K ++L RG+ + Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L E+I + D N+L +V TK G ++R L +F + G A+K Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636 Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S E + L+ TK+G VRFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S+ ++ D Sbjct: 696 SVDVIPPGD--------------------------------------------------- 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILTV+EKGFGKRT +RI R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR PV+EI + R TKGV + D Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 >gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] Length = 889 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 356/893 (39%), Positives = 520/893 (58%), Gaps = 95/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM++SYL+YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KCA Sbjct: 40 IQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYSKCA 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +D+P+ LD L+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ +DEV+ +IR S + ETAR LM DL Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM----------DL 448 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E N L +I + DI Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRTRI+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFGPDEAIQTVLSIPNYEVAK---YLVLATRSGKVKKTALAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F ++ GR + G Sbjct: 670 GGLIAVRLMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ +GD++++M +V D+D D Sbjct: 730 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 755 ----------------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V ++DQ++ + G +IR V E++ R T+GV + K++ ++S+ R Sbjct: 797 AVIVEEDDQVMAIMKSGKVIRSNVAEVKRTGRNTQGVTLAKPDKNDEIISIAR 849 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802 ADY++ + + QR+++ + +EI + D + + E ++L +E ++T Sbjct: 487 ADYNDILAKPER---QRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVT 543 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V+ GF KRT + ++R +R GKGI+ +K+ E + F + ++ ++ ++KG + Sbjct: 544 VTHSGFIKRTKADEYRAQHRGGKGIKG---AKLREDDVVDHFFLTSTHNWLLFFTNKGRV 600 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 R+ E+ SR +KG + DE + +V I E+ Sbjct: 601 YRLKAYELPEGSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEVA 644 >gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311] gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311] Length = 892 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 368/906 (40%), Positives = 533/906 (58%), Gaps = 67/906 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL +R P +L+NG GIAVGMATN Sbjct: 134 TESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++ G +A+I NP+I LM +I GPDFPTG ILGR+GI+ Y TGRGS+ Sbjct: 194 IPPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253 Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +V+T +PYQ NKAAM+E+IAE+V +K++ I+D+RDESDR Sbjct: 254 MRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G RVV+EL+R A V+LN LY+ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 314 DGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILLTLRKMLEVFLEFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR +L +R Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQERHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS VQ AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL R R+ GII+ EL ++D PRRT I++ +ED D I E VV ++ Sbjct: 468 DYKDILGRRERVFGIIEDELGQLRDRHAVPRRTEILDLAGGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYAVPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S A+G ++ +L + + E IT+++ E + L + T G ++R +LS F Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLAVSEFNDDTDLLML---TTGGYIKRTRLSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 I +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + G Sbjct: 645 SNIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDNELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VR ++L +GD ++SM ++ AD I+ +E +D +G Sbjct: 704 VRSMNLREGDSLVSMDVLPAELADQ----------------IAASVDE-----DDEGSDG 742 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + + ++L S G GKR FR+ R+G G+RA + LV Sbjct: 743 G------ESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVG 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEI 902 + + ++++LVS+KG ++R + I SRA GV + K +R+ V + E+E Sbjct: 795 LRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAET 854 Query: 903 VDEAES 908 D+ ES Sbjct: 855 DDDTES 860 >gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] Length = 894 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 357/906 (39%), Positives = 520/906 (57%), Gaps = 95/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KCA Sbjct: 40 IQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCA 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ +DEV+ +IR S + E AR LM DL Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLM----------DL 448 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E N L I + DI Sbjct: 449 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVA---KYLVLATRSGKVKKTALAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F + ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ +GD+++ M +V D+D D Sbjct: 730 VQGMKFREGDELLDMDVVW-GDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V ++DQI+ + G +IR V+E++ R T+GV K++ ++S+ R E + Sbjct: 797 AVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEKDDD 856 Query: 904 DEAEST 909 + AE+ Sbjct: 857 ESAENA 862 >gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 867 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 367/879 (41%), Positives = 530/879 (60%), Gaps = 94/879 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EM+ S++ YA++VI RA+PD+RDGLKPVHRRILF M G +K Y KCA Sbjct: 26 IVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRKCA 85 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 G V+G +HPHG+AA+YD++ R+AQD+S+R +++G GNFGS DGDPPAA RYTE RL Sbjct: 86 TTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEARL 145 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+TVDF+PN+D EP+VL +R+PN+LVNG GIAVGMAT+IP HNL Sbjct: 146 TKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPHNL 205 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE +D V I+NPD DL+ +MEI+ GPDFPTG ILG +GI+ Y TG+G I +R + Sbjct: 206 GETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTILGLSGIRETYRTGKGRITVRSAAS 265 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314 IE +R +IVV ++PY VNKA ++EK+A+LV+EKRI I+ +RDESDR + R+VIEL Sbjct: 266 IEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVIEL 325 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKAFVAFREEVV 369 KR A+ V+LN+LY+ T LQ F+ NM+AL Y+P+ TL+ L ++A ++ VV Sbjct: 326 KRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQKSVV 385 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RRTK+ L+KA R H++ GL A+ N+DEV+RIIR S N ETA++ L +R Sbjct: 386 LRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCER--------- 436 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 S Q + I+++RL RLT L R+ ++ EL+ L ++I+ Sbjct: 437 -----------------FDFSIRQAQHIVDMRLGRLTALERERLQKELDELIVKIEYFNR 479 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 I++ S L +I EL +K RRT I LD EDE+ + E++V+T++H GYV Sbjct: 480 IINESSLLNQVICDELTDLKTRYANKRRTVIEPYSLDEFEDEELVKEEEVVITLTHFGYV 539 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR P+ Y+ Q RGG+G SG+ R++DFV L STH +LFF++ G V++ K +++P Sbjct: 540 KRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPE 599 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQ 667 QA+G+A++N+L L +GE++ T++ E +N Y++ AT G +++ L ++ Sbjct: 600 AGRQAKGQAIVNLLQLVEGEKVRTVITVHE----FNREDYLLMATARGMIKKTSLYEYAN 655 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I ++G IA+ L DE++ V+ +++L T G +RF + IR GRN+ GV GI Sbjct: 656 IQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIR-NTGRNTFGVSGI 714 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L D+VI MA V DE Sbjct: 715 KLRHSDKVIGMAAV-------DE------------------------------------- 730 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 E+ +L +S+ G+GKR+ ++RI NR GKG+ + G L + + Sbjct: 731 ---------ERHLLVISKNGYGKRSEFNEYRIQNRGGKGL--ITYKPTEQTGDLAGIASI 779 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 ND D II+++D G +IRV EI I SR TKGV + TA Sbjct: 780 NDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLMRTA 818 >gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] Length = 876 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 357/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL++ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 223 CEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM +L Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E L I+I + DI Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+KR Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L GE I ++ P + + Y+V AT+ G V++ L ++ + Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C E+DI+L +KLG ++F ++ GR + Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ +GD+++ M +V Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + E ++L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E++ Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858 >gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B] gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B] Length = 770 Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust. Identities = 356/848 (41%), Positives = 527/848 (62%), Gaps = 86/848 (10%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M ++GV +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS Sbjct: 1 MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 +DGD AA+RYTE R+ K A +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG Sbjct: 61 MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE +D V+DNPD+ LME+I GPDFPTGA+++GR+GI Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHR 180 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TG+GSIV+R + IE TS +E+IVVTE PY VNK + E I L +EKRI I + Sbjct: 181 AYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAV 240 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDES R+G R VIE++R ASA+VILN L++ TSLQ+ FS NM+A+ P+ +L I+ Sbjct: 241 RDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIID 300 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 ++ ++EV+VRRT++ KA RAH+L GL +A+ +LDEV+ IIR S A+ ELM Sbjct: 301 NYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMS 360 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LSE Q++AIL++RL RLTGL RD I++E N Sbjct: 361 R--------------------------FELSERQSQAILDMRLRRLTGLERDKIQSEYND 394 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDM 538 L I + DIL+ R++ IIK+E+ VK + RRT ++ G +L +EDED I ED+ Sbjct: 395 LLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDV 454 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 ++T+S+ GY+KR+ +RAQ+RGG+G G + ++DFV +L STH +VLFF++LG V Sbjct: 455 LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 514 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + +P A+G ++N+L L++GE I TI+ +++ + N Y F T+ G V+ Sbjct: 515 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVA--NKYFFFTTQQGIVK 572 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R +S+F I ++G A+ L DE+++V + D+++ T+ G VRF ++A+R G Sbjct: 573 RTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-G 631 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG++L +GD+V+ + R+++G Sbjct: 632 RTATGVRGVNLREGDKVVGAS-----------------------RIVNG----------- 657 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 Q +L ++EKG+GKRT + ++ R GKGI+ +++ N Sbjct: 658 -------------------QEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKN-- 696 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 G L + +N N+ I++++D G +IR V I R+T GV + ++ ++V+V + Sbjct: 697 GPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRLDQEAKIVTVALV- 755 Query: 899 ESEIVDEA 906 E EI D++ Sbjct: 756 EQEIEDKS 763 >gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni] Length = 844 Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/916 (39%), Positives = 541/916 (59%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS E VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R +HIEK + +++ IV+ E+PYQ NKA ++E+IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKTHIEKKT-NKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RR + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E I I+P + DES + F TK+G V+R Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFDESKS----LCFFTKNGIVKRTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD D +++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDGLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLEN 686 Query: 688 -ETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 E+ + + +L TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKVLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 >gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] Length = 876 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 357/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL++ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM +L Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E L I+I + DI Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+KR Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L GE I ++ P + + Y+V AT+ G V++ L ++ + Sbjct: 616 RDSKGQHVANLLQFAPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C E+DI+L +KLG ++F ++ GR + Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ +GD+++ M +V Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + E ++L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E++ Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858 >gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] Length = 876 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 356/899 (39%), Positives = 520/899 (57%), Gaps = 96/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL++ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVID 401 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ +DEVV +IR S + ETAR LM +L Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------NL 451 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E L I+I + DI Sbjct: 452 LD----------------VDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDI 495 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRT+I+ +M ED I E++VVTV+ GY+KR Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGS 615 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L GE I ++ P + + Y+V AT+ G V++ L ++ + Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C E+DI+L +KLG ++F ++ GR + Sbjct: 673 GGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ +GD+++ M +V Sbjct: 733 GVQGMRFREGDELLDMDVV----------------------------------------- 751 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + E ++L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 752 ---AAETSKDL-------LVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + DQ++ + G +IR +NE++ R T+GV + K + ++S+ R E++ Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKGDEIISIARNEETD 858 >gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] Length = 871 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/907 (39%), Positives = 525/907 (57%), Gaps = 98/907 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 23 IEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDRAYSKCS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+ AIYD L R+ QDW+LR L GQGNFGS DP AA RYTE R+ Sbjct: 83 RVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGSPGNDPAAAPRYTETRM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A ++ D+ K+TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 AQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NPD + L E I+GPDFPTGA ILGR+GI +AY TGRGSI +R Sbjct: 203 REVAEGVAWYLANPDASREELREALIARIKGPDFPTGATILGRSGIDDAYRTGRGSITMR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + KIA+L +E RI IAD+RDE S R G R+ Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLALKIADLTKEGRIQGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ FS NM+AL P ++ + +V + +V+ Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSIDAFIHHWVNHQLDVIS 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT +LL +A D+ H+L G A+ NLDEV+ +IR SP E AR L++ Sbjct: 382 RRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVEEARGGLIE----------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + ++Q AIL L+L RL L R I +E + L +I + DI Sbjct: 431 ---------------LLGIDDIQATAILNLQLRRLAALERQKIIDEHDDLERQILDYRDI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + D RR+ I+ ++ ED I ED+VVT++ GYVKR Sbjct: 476 LASPQRQRDIVGSELSEIVDRYGDERRSTILPYGGEVSMEDLIAEEDVVVTITRGGYVKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G +R++D V F+ +TH +LFF++LG VY+ K + LP GS Sbjct: 536 TRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGS 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +++G+ + N+L+ GE I ++ E ++ Y+V AT+ G V++ +LS++ Sbjct: 596 RESKGQHVANLLAFQPGESIAQVLALRNYE---DHEYLVLATRSGLVKKTRLSEYDTNRS 652 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723 +G IA+KL S DE++ +ND++L ++LGQ +RF +++R GR + G Sbjct: 653 AGLIAIKLREYDDGSVDELVKAMPVNADNDLILISRLGQSIRFTADDASLRPM-GRGTSG 711 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ A GD+++S A V+ DAD Sbjct: 712 VIGMKFADGDELLS-ADVVKDDAD------------------------------------ 734 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V++ GF KRT+ ++R+ R G+G++ + + + G LV Sbjct: 735 ----------------LFVVTDGGFAKRTAISEYRVQGRGGQGVKVAKL--VEDRGHLVG 776 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 +D+++++ +KG ++R V E+ R T+GV K +R+++V R E + Sbjct: 777 ALITEQDDEVLVIMEKGKIVRSAVAEVNRTGRNTQGVTFAKPDKKDRIIAVARNVERSLN 836 Query: 904 DEAESTE 910 DE ++ E Sbjct: 837 DEDDTAE 843 >gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon] Length = 843 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 348/905 (38%), Positives = 546/905 (60%), Gaps = 98/905 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VS+ DEM +SY+ YA++VI+GRA+PD RDGLKPVHRRIL+GM ++GV N+ + K A Sbjct: 14 VIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ A+YD + RMAQD+S R L++GQGNFGSVDGD AA RYTE RL Sbjct: 74 RIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYTEARL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL KDTV++ PN+D S +EP +L A+ PN+L+NG GIAVGMATN+P HNL Sbjct: 134 SKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG + VI+ P++ ++ LM+II+ PDFPTG +I+G GIK AY TGRGSI IR + Sbjct: 194 TEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRAYETGRGSIRIRAKAE 253 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G +E+IV+ EIPYQVNK+ ++E+IAE ++ ++ I+ LRDESDR+G R+VIELK Sbjct: 254 IE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVIELK 312 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 GA++ +ILN+LY++T L++ F V +AL +P TL +++ ++ R+EV +RR +Y Sbjct: 313 AGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIECYIKHRKEVTIRRLQY 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A R H+L GL IA++N+DEV+R+I+ + + +TA+ L+ R Sbjct: 373 ELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR--------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q + IL++RL+RL+ L RD I E L +I ++L S + Sbjct: 418 -----------FELSEEQAKEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEA 466 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+ ++K++L+ KD+ RRT I E ++ + + D + +++++ ++ YVKR+P + Sbjct: 467 RIYELLKEDLIEQKDKYGDARRTNI-EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADI 525 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 ++ Q RGGKG + + +++D + + ST ++FF+ G Y+ K + +P S ++G Sbjct: 526 FKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKG 585 Query: 616 KALINI----LSLNQGERITTIMPFPED-----ESSWNNLYVVFATKHGNVRRNKLSDFI 666 K L+NI +S + E+ T + PE+ E++ Y+VFATK G V+R+ L+ Sbjct: 586 KPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLK 645 Query: 667 QINRSGKIAMKLDSRDEILSV----------ETCTQENDILLTTKLGQCVRFPISAIRVF 716 I +G +A++ D + V + +N I+L++K G+ + F +R Sbjct: 646 AIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREM 705 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 GR + GVRG+ L K D++ S+ Sbjct: 706 -GRYAAGVRGMRLEKDDEIASV-------------------------------------- 726 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +++ +S+E+ + +T++EKG+GKRT +R ++R GKG+ + + N Sbjct: 727 --EALDVGVSKEKSR--------AVTITEKGYGKRTKLDAYRETHRGGKGVISIKTGERN 776 Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +V + V + D++++ + G + ++ V I + R T+GV I + K ERVV+V+ Sbjct: 777 --GKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVRIMNVKKGERVVAVDI 834 Query: 897 IRESE 901 + +E Sbjct: 835 LSATE 839 >gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c] gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c] Length = 830 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 365/889 (41%), Positives = 517/889 (58%), Gaps = 93/889 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 12 IEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG YHPHG+ +IYD + R+AQ WSLR L++G GNFGS DPPAA RYTE R+ Sbjct: 72 RIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ DTVDF PNYDG QEP+VL +R+PN+LVNG GGIAVGMATNIP HNL Sbjct: 132 AALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NPD L+AL+ II+GPDFPT +I+GR GI++AY TGRGSI +R Sbjct: 192 REVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIVGRQGIEDAYRTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R Q+VVTE+PYQVN + EKIAELVR+ RI I+D+RDE S R G R+ Sbjct: 252 AVVNVEENKG-RTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDVRDETSARIGQRL 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI+LKR A A V+LN LY++T LQ F NM+A+ P L +++ +V + +V+V Sbjct: 311 VIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDGVPRTLRLDQMIRYYVEHQVDVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA++R HVL GL IA+ +LD+V+ +IR + + + AR +LM R Sbjct: 371 RRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQLMTR---------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 Y+ LSE+Q AIL+++L RL L R I +E L ++ E I Sbjct: 421 --------YS--------LSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R II +EL V D+ RRTRIV +M ED I +ED+VVTV+ GY KR Sbjct: 465 LASPQRQREIIGEELKEVVDKFGDERRTRIVPFEGEMSIEDLIAQEDVVVTVTRGGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K LP + Sbjct: 525 TKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQA 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + NIL+ Q ERI +M + ++ Y+V ATK G +++ L+DF Sbjct: 585 RSAKGQHVANILAFGQDERIAEVMAIRDYAAAP---YLVLATKRGLCKKSALTDFDSNRA 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G +A+ L DE++ ++D+LL ++ Q +RF ++ GR + GV G+ Sbjct: 642 GGLVAINLREDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+++S+ ++ K DS+ Sbjct: 702 DADDELLSIEVI----------------------------------KPDSTAS------- 720 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGALVAVFPV 847 +L + GF KRT ++ + R GKG+ + S+ N +GALV V Sbjct: 721 ----------LLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIVPSRGNLVGALV----V 766 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +DQ+ ++ G ++R ++R A R T GV + +VV V R Sbjct: 767 EPDDQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVGVAR 815 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 15/148 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR +I + +E+ D EG +S ++L +E ++TV+ G+ KRT + Sbjct: 471 QREIIGEELKEVVDKFGDERRTRIVPFEGEMS---IEDLIAQEDVVVTVTRGGYAKRTKT 527 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + E + F + ++ ++KG + R +E+ + Sbjct: 528 DLYRSQKRGGKGVQG---AALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQA 584 Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899 R+ KG I + +DER+ V IR+ Sbjct: 585 RSAKGQHVANILAFGQDERIAEVMAIRD 612 >gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] Length = 917 Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust. Identities = 366/904 (40%), Positives = 521/904 (57%), Gaps = 97/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 42 IQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 102 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 161 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 162 APLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 221 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL+ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 222 REVADGVHWALDHPDATREELLEALIARIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 281 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 282 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSGRTGQRL 340 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +VA + +VV Sbjct: 341 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVAHQIDVVA 400 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ +DEVV +IR S + ETAR LM DL Sbjct: 401 RRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLM----------DL 450 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL ++L RL L R I +E N L I + DI Sbjct: 451 LD----------------VDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDI 494 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + RRTRI+ +M ED I E++VVTV+H G++KR Sbjct: 495 LAKPERQRQIVGDELDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFIKR 554 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF+ G VY+ K + LP GS Sbjct: 555 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGS 614 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V ATK G V++ +LS++ + Sbjct: 615 RDSKGQHVANLLQFAPDEHIQTVLSIPNYEVAE---YLVLATKSGKVKKTRLSEYDSPRQ 671 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L + DE++ C +DI+L ++ G ++F ++ GR + G Sbjct: 672 GGLIAVRLMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAG 731 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ +GD ++SM +V G T+ Sbjct: 732 VQGMKFREGDSLLSMDVVW------------------------GQTD------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 K+ F++T +GF KRT+ ++R+ R+G G++A + + G LV Sbjct: 755 ------------KDLFVVT--NEGFAKRTAISEYRLQGRNGYGVKALQL--VEGRGELVG 798 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++DQ++ + G +IR VNE+ R T+GV + K + ++S+ R E+E Sbjct: 799 ALVVDESDQVLAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKGDEIISIARNAETE-- 856 Query: 904 DEAE 907 DE E Sbjct: 857 DELE 860 >gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 865 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 351/900 (39%), Positives = 532/900 (59%), Gaps = 88/900 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 5 ENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKH 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+ISG+ G YHPHG IY L RMAQ W +R L++GQGNFGSVDGD PAA RYT Sbjct: 65 RKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A+ L++DL K+TV+ PNYD + +EP V A++PN+L NG GIAVGMATNIP Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E++ + V+ NP + +D +M ++ PDFPTG +I G GIK A+ TGRG +++R Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLR 244 Query: 252 GVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 V +E+ + D+++++V EIPY VNK+ ++E+IA+L+ K I IADLRDESD+ G R Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++IELKRG +VILNQL++Y+ LQ F NM+AL+ P+ + ++ A+V R EVV Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVV 364 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ LNKA RAH+L G A+ ++DEVVR+IR S N E AR EL+QR Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR--------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E Q A+L+L+L +LTGL + I E L +I Sbjct: 416 -----------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRA 458 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 +L+S + + II++ELL ++ + R+T+I+ ++ ED I E +++T+S Y+K Sbjct: 459 VLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIK 518 Query: 550 RVPLSVYRAQRRGGKGRSGV-VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ +R QRRGG+G +G+ + R+ED + L++ STH +L F++LG Y KVW++P Sbjct: 519 RMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPE 578 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +++GK LIN+L + E+I T++ E Y++ ATK G V++ +LS+F Sbjct: 579 TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQ---AYILMATKKGIVKKTELSEFSH 635 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 R G A+ + DE+++ + I+L T G VRF +R GR + GV+G+ Sbjct: 636 PRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPM-GRTARGVKGV 694 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D DY + G Sbjct: 695 TLKD-------------DTDY----------------VVG-------------------- 705 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 C+ + E IL V E GFGKR++ DFR +NR G G+R+ S+ N G +V V Sbjct: 706 --CEAVNGTET-ILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERN--GNVVGALCV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D D ++++S +G +R+ + ++R+ R T+GV + + + + +V+++++ S+ VD A+ Sbjct: 761 TDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNAK 820 >gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 817 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 340/892 (38%), Positives = 525/892 (58%), Gaps = 84/892 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM++SY+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM Q+G+ N Y Sbjct: 3 EGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y+ + RMAQ W+LR LI+GQGNFGS+D DPPAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D S +EP VL R PN+L+NG GIAVGMATNIP Sbjct: 123 EVRMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E + A I+N I ++ +ME I+ PDFPTG +I G G+K A+ TGRG IV+R Sbjct: 183 PHNLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIYGYEGVKKAFYTGRGRIVLR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+E+ G R+ I+V EIPYQVNKA M+ + EL+RE ++ I +RDESDR G R+V Sbjct: 243 AKVHLEEIQG-RQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LK+ + ++LN L++YTSLQ+ F+VN +AL KP + + +++ FV R++V++R Sbjct: 302 YLLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQLNIKDLIQHFVDHRQDVIIR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L K +DR H L G + +LD+++ +I+ S + A L++ Sbjct: 362 RTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIK------------ 409 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+R+IL++RL LT L I+ E L +I ++L Sbjct: 410 --------------MFKLSENQSRSILDMRLQNLTSLELKKIKKEYEELVKKIAYLKNVL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S + IIK+ELL ++D+ RRT+I ++ ED I E +V+T+SH GY+KR Sbjct: 456 IQHSIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 LS Y+ Q RGG G G R+ DF L I + H +LFF+ G + +V+ +P GS Sbjct: 516 SLSEYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+A+ N++ L +++ + + ++ N YV+ T+ G +++ L ++ + Sbjct: 576 ISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRPR 635 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 + G A+ + D +L + + + K G+ +RF +R GRNS GVRGI+L Sbjct: 636 KDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRA-TGRNSSGVRGINL 694 Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + D VI M IC VEG Sbjct: 695 SISEDTVIGM-------------IC---------------------------VEGQ---- 710 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++ ++L VSEKGFGKRT+ D+RI+NR GKGI+ ++++ + G+L+++ V Sbjct: 711 -------EKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQ--KTGSLISIKHVT 761 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 + D ++++ G +IR+ V++IR+ R T+GV + + + + + VE++ ++ Sbjct: 762 NQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVSQT 813 >gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8] gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II subunit A gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8] Length = 804 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 345/872 (39%), Positives = 526/872 (60%), Gaps = 91/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K ARI GE Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL + A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL E VD Sbjct: 130 EMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H+E Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ + A+ Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDAN 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR +Y Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + RAHV+ GL A + VV I+R S + E+AR+ LM+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K + PRRT + + ++ +E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG + + ++D V + + +S LF ++LG Y K ++L RG+ + Sbjct: 522 QKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L E+I + + +V ATK G ++R L +F + G A+K Sbjct: 582 TAFLNLEDTEKIVALASL-----NGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIK 636 Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S E + L+ TK+G +RFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S+ ++ + Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILTV+EKGFGKRT +RI R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR PV+EI + R TKGV + D Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 >gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102] gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102] Length = 875 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 366/886 (41%), Positives = 531/886 (59%), Gaps = 70/886 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 QALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+++G +A+I+NPD+ L+ +I GPDFPTG ILGR GI+ Y GRGSI +RGV+ Sbjct: 199 LNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREGIRETYLGGRGSITMRGVA 258 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE DR+ +++TE+PYQ NKA ++E+IAELV +K++ I+D+RDESDR G R+ Sbjct: 259 AIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN L++ T+LQS FS M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ GII+ EL + D TPRRT I++ +ED D I E VV V+ GY+KR Sbjct: 473 LGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGGGLEDIDLIANERSVVLVTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E IT+++P E +++ ++ T+ G ++R +LS F I Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLIPVSEFN---DDMDLLMLTRGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ + G + F +S +R GR + GVR ++ Sbjct: 650 NGLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSDEELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++SM ++ AD RI SA+ D EE + SS +G Sbjct: 709 LREGDGLVSMDVLPVELAD---RIA----QSAE------DDEE----DDASSGDG----- 746 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L S G GKR FR+ R+G G+RA ++ ALV + + Sbjct: 747 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDD--ALVGLRVLG 795 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++LVS+KG ++R + I SRA GV + K +R+ V Sbjct: 796 AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEV 841 Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 519 RIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDF 576 RI + D E++D + V+ S G KRVP++ +R Q+R G G + R +D Sbjct: 728 RIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDA 787 Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636 + L ++ VL S G + + +P Q+R + + L++G+R++ ++ Sbjct: 788 LVGLRVLGAGEEVLLVSEKGVIVRTSADAIP---QQSRAATGVRLQRLDKGDRLSEVVLV 844 Query: 637 P 637 P Sbjct: 845 P 845 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ V+E G+ KR +F ++R +G +A S+ E A+ ND+D Sbjct: 513 DLIANERSVVLVTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 ++L SD+G +P + SR KG V + ++E + S+ + E Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLIPVSE 620 >gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni] Length = 844 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/916 (39%), Positives = 538/916 (58%), Gaps = 126/916 (13%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E+I S D + I V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 2 ENIFSKDSD----IELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQN 57 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DG Sbjct: 58 DEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDG 117 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA RYTE ++ K +H LL D+ KDTVDF PNYDGS E VL +R PN+L+NG GI Sbjct: 118 DSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGI 177 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATNIP H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY Sbjct: 178 AVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYR 237 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG + +R HIEK + +++ IV+ E+PYQ NKA ++ +IAELV+EK+I I+++RDE Sbjct: 238 TGRGRVKVRAKPHIEKKT-NKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDE 296 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S+++G RVVIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ Sbjct: 297 SNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFL 356 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 357 THRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-- 414 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 LSE+Q AIL+++L RLTGL R+ I NEL L Sbjct: 415 ------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMK 450 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI +IL S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT+ Sbjct: 451 EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTI 510 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 +H GY+KRVP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y K Sbjct: 511 THRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLK 570 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 V+++P GS A+GKA++N+++L E+I I+P + DES + F TK+G V+ Sbjct: 571 VYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKCTN 626 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSV---------------------------------- 687 LS++ I G A+ LD DE+++ Sbjct: 627 LSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLEN 686 Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 TQ + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND 745 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 EQ IL++S Sbjct: 746 ---------------------------------------------------EQEILSISA 754 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT++ ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV Sbjct: 755 KGIGKRTNAGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRV 812 Query: 866 PVNEIRIASRATKGVV 881 + IR A R T GV+ Sbjct: 813 DMQSIRKAGRNTSGVI 828 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ V Sbjct: 504 ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF---FTANTHDTLMFV 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + + +E+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601 >gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703] gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium adolescentis ATCC 15703] Length = 886 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 357/901 (39%), Positives = 521/901 (57%), Gaps = 96/901 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KCAR+ GE Sbjct: 27 LQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCARVVGE 86 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTECR+ A Sbjct: 87 VMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRMAPLAM 146 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ EV + Sbjct: 147 EMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAE 206 Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 G +D+PD LD L+ II+GPDFPTGA ILG GI+ AY TGRG I +R V + Sbjct: 207 GVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNT 266 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELK 315 E+ G R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+V+ LK Sbjct: 267 EEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLK 325 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ RRT Y Sbjct: 326 RDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIARRTAY 385 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A +R H+L G A+ +DEV+ +IR S + ETAR LM DL+D Sbjct: 386 LKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM-------------DLLD 432 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + EVQ AIL ++L RL L R I +E N L +I + DIL+ Sbjct: 433 -------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPE 479 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 480 RQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADE 539 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS ++G Sbjct: 540 YRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKG 599 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + N+L E I T++ P + + Y+V AT+ G V++ L+++ + G IA Sbjct: 600 QHVANLLQFGPDETIQTVLSIPNYDVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIA 656 Query: 676 MKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 ++L ++ DE++ C ++DI+L +K G ++F + ++ GR + GV+G+ Sbjct: 657 VRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMK 716 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD++++M +V D+D D Sbjct: 717 FRDGDELLAMDVV-QGDSDRD--------------------------------------- 736 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV V Sbjct: 737 -----------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVGAVIVE 783 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++DQI+ + G +IR V E++ R T+GV + K++ ++S+ R E++ D+AE Sbjct: 784 ESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD-EDDAEQ 842 Query: 909 T 909 Sbjct: 843 A 843 >gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1] gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1] Length = 804 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 347/872 (39%), Positives = 525/872 (60%), Gaps = 91/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K ARI GE Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMAQ +++R LIEGQGNFGS+D DPPAA RYTE RL K A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +EP VL ++ PN+++NG GIAVGMATNIP HNL E VD Sbjct: 130 EMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H+E Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R +++V+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ + S Sbjct: 248 GKRVKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR +Y Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + RAHV+ GL A + VV I+R S + E+A++ LM+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K + PRRT I + + +E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG + + ++D V + + S LF ++LG Y K ++L RG+ + Sbjct: 522 QKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L E+I + D N+L +V TK G ++R L +F + G A+K Sbjct: 582 TAFLNLEDTEKIVALASLNGD---GNDLVIV--TKSGKIKRTALKEFENATSNRGVRAIK 636 Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S E + L+ TK+G +RFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S+ ++ + Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILTV+EKGFGKRT +RI R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR PV+EI + R TKGV + D Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++ V++ G KRT+ +F + S +G+RA + +EI V+ VN + ++V+ K Sbjct: 606 LVIVTKSGKIKRTALKEFENAT-SNRGVRAIKIEPGDEI---VSARVVNSEKETLIVATK 661 Query: 860 -GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G IR PV+++R R GV + VVSV+ I E Sbjct: 662 MGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPGE 704 >gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1] Length = 837 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 355/899 (39%), Positives = 545/899 (60%), Gaps = 92/899 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ + K ARI Sbjct: 7 ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 66 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDA+ RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 67 GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 126 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A + D+ K+TVDFRPNYD + EPVVL R PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 127 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 186 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + + ++D+ +D LM+ ++GPDFPTG + G+ +AY TGRG++ +RG IE+ Sbjct: 187 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIEE 246 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + IV+ EIPY +NK++++EKIA LV E+RI +ADLRDESDR+G RVVI+LKRG Sbjct: 247 RKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRGT 306 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L+S + +NM+A+ +P+ L L F+ R E+++RRT+Y L Sbjct: 307 IPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDLR 366 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LMQR Sbjct: 367 KAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------------ 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q++AIL++RL RLT L + + +E L +I+ IL + L Sbjct: 409 --------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLR 460 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++++E ++D T RRT ++ + L + ED I +D+V+T+S GY+KR L Y+ Sbjct: 461 QVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQ 520 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKG +G+ D+DFV + + H +L F++ G +++ KV ++ GS A+G Sbjct: 521 QQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVH 580 Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 + N+L L + E +TT++ F ED + +F TK G V+R+ S + + + G I Sbjct: 581 IANLLPLEKDEWVTTVLSVREFAEDR------FFLFVTKRGMVKRSSASLYARARKGGLI 634 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V ++ ++LTT G +RF +R GR++ GV+G++L+ D+ Sbjct: 635 AVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDR 693 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++ A+ + GD D+S E Sbjct: 694 VVACAV------------------------LPGD---------DTSTE------------ 708 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 I+++S G+GKRT +R+ +R GKG++ V+ + G ++ PV D++ ++ Sbjct: 709 -----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALV 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910 L++ +IR+ V+E+R RAT GV++ + VV +R+ E E+V+E A+S+E Sbjct: 762 LLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 820 >gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] Length = 904 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 357/901 (39%), Positives = 521/901 (57%), Gaps = 96/901 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KCAR+ GE Sbjct: 45 LQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSKCARVVGE 104 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG++AIYD L RMAQ WS+R L++GQGNFGS DP AA RYTECR+ A Sbjct: 105 VMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTECRMAPLAM 164 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ EV + Sbjct: 165 EMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAE 224 Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 G +D+PD LD L+ II+GPDFPTGA ILG GI+ AY TGRG I +R V + Sbjct: 225 GVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNT 284 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELK 315 E+ G R +V+TE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+V+ LK Sbjct: 285 EEIKG-RMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRLVLVLK 343 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ RRT Y Sbjct: 344 RDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIARRTAY 403 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A +R H+L G A+ +DEV+ +IR S + ETAR LM DL+D Sbjct: 404 LKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM-------------DLLD 450 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + EVQ AIL ++L RL L R I +E N L +I + DIL+ Sbjct: 451 -------------VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPE 497 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 498 RQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKRTKADE 557 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS ++G Sbjct: 558 YRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKG 617 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + N+L E I T++ P + + Y+V AT+ G V++ L+++ + G IA Sbjct: 618 QHVANLLQFGPDETIQTVLSIPNYDVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIA 674 Query: 676 MKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 ++L ++ DE++ C ++DI+L +K G ++F + ++ GR + GV+G+ Sbjct: 675 VRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMK 734 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD++++M +V D+D D Sbjct: 735 FRDGDELLAMDVV-QGDSDRD--------------------------------------- 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV V Sbjct: 755 -----------LLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEGR--GSLVGAVIVE 801 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++DQI+ + G +IR V E++ R T+GV + K++ ++S+ R E++ D+AE Sbjct: 802 ESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEETD-EDDAEQ 860 Query: 909 T 909 Sbjct: 861 A 861 >gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] Length = 854 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 366/903 (40%), Positives = 529/903 (58%), Gaps = 96/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 13 IEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRSFNKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG++AIYDAL R+ QDW++R L GQGNFGS D AA RYTE ++ Sbjct: 73 RVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ K TVDF+ NYDG QEPV+L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 133 APLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NP L+AL++ I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 193 REVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQILGHKGIEDAYRTGRGSITMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ +R +VVTE+PYQ N + KIAELV++ +I IADLRDE S R G R+ Sbjct: 253 AVVNVEEIQ-NRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIADLRDETSGRTGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++TSLQ FS NM+A+ P +L ++ +VA + EV+V Sbjct: 312 VVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDGVPRTLSLDAFIRHWVAHQMEVIV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++LLN+A RAH+L GL A+ LDEV+ +IR SP + AR L Sbjct: 372 RRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEAR-------------GGL 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+ + ++Q AIL+++L RL L R I++E L +EI E I Sbjct: 419 IDLLG-------------IDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+S R I+ +EL + ++ RRT+I+ G DM ED I E+MVVT++ GYVK Sbjct: 466 LASEDRQRTIVSEELAEIVNKFGDERRTQIMLGYDGDMSMEDLIPEEEMVVTITRGGYVK 525 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + L Sbjct: 526 RTRSDNYRSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEA 585 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ E+I ++ + + S Y+V ATK+G V++ +L D+ Sbjct: 586 GRDAKGQHVANLLAFQPDEKIAQVLDLKDYQQS---PYLVLATKNGLVKKTRLEDYDTNR 642 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D+LL ++ GQ +RF + A+R GR + GV G+ Sbjct: 643 SAGVIAINLRDEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEALRPM-GRATSGVTGM 701 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D++++ +V TE+ Sbjct: 702 KFRQDDELLAANVV---------------------------TED---------------- 718 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 ++ V+E G+ KRT+ ++R R G GI+ + + + G LV V Sbjct: 719 ----------SYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKL--VEDRGDLVGALIV 766 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 D+D++++V + G ++R V E+ R T GV+ K++R++ V R RE + E+E Sbjct: 767 QDDDEVLVVMEGGKVVRSNVAEVPAKGRDTMGVIFAKPDKNDRIIEVARNRERGL--ESE 824 Query: 908 STE 910 TE Sbjct: 825 ETE 827 >gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss] gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14] gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg] Length = 833 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 348/891 (39%), Positives = 527/891 (59%), Gaps = 89/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG A IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL ++ FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ NP ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++VI+N+LY++T +Q F NM+AL+ P ++ ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRMDVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q+ AILELRL +LTGL D ++ E N L +I + Sbjct: 413 ---------------LFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRT I D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDIIADESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F+++G Y KVW+LP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y++ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLLLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +SL + + V+ D Sbjct: 694 VSLKNEEDFVVSCQVVTDD----------------------------------------- 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 -----------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRN--GDVLGAIS 759 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 760 VTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601] gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. AS9601] Length = 865 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 345/877 (39%), Positives = 533/877 (60%), Gaps = 66/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Sbjct: 14 EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G ++I NP ++ L EII+GPDFPTG ILGR GIK + TGRGSI Sbjct: 194 IPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRDGIKETFKTGRGSIT 253 Query: 250 IRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE+ + +++ +++TE+P+Q NKAA++E+IA+LV EK++ I+D+RDESDR Sbjct: 254 MRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + +AR L Sbjct: 374 VETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVSARENLQ------- 426 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS Q AIL+++L RLT L D I+ E + L +I Sbjct: 427 -------------------ADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKIN 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL+S+ R+ II +EL + + +PR+T I++ ++D D I + VV ++ Sbjct: 468 LYKQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + + RG +G++G +++D V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G + +L + + E+IT+++ +S N+ Y++ TK G ++R LS F Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLMLTKAGFIKRTSLSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + + +L+ ++ G + F I+ +R GR + G Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ ++L KGD ++SM ++ +D +++ +E+IT ++D ++E Sbjct: 704 VKSMNLRKGDNLVSMDVLT---SDLVDQLAK--------------SEDITK-ESDENLEV 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N SE ++L S G GKR FR+ R+G G+RA +++ LV Sbjct: 746 NSSE---------GPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIKDDV--LVC 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + + ++++ V++KG ++R ++I SRA GV Sbjct: 795 LKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGV 831 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 70/277 (25%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQENDILLTTK 701 N+ VV T+ G ++R +++F +R GK K DE+ +C + +LL + Sbjct: 517 NDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSD 576 Query: 702 LGQCVRFPISAIRV-FAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKH 757 G V + + A RV + R + G + L + +++ S+ V D D CY+ Sbjct: 577 RG--VSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFDND-----CYL-- 627 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 L +++ GF KRTS F Sbjct: 628 -------------------------------------------LMLTKAGFIKRTSLSAF 644 Query: 818 RISNRSGKGIRATDVSKIN-EIG-ALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIA 873 IR+ + IN E G AL V + D +++ S G I R+ +NE+R Sbjct: 645 -------SKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPL 697 Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R +GV + K + +VS++ + S++VD+ +E Sbjct: 698 GRTARGVKSMNLRKGDNLVSMD-VLTSDLVDQLAKSE 733 >gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068] gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068] Length = 938 Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust. Identities = 372/905 (41%), Positives = 548/905 (60%), Gaps = 32/905 (3%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + VKCA+ISG+ Sbjct: 30 IEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISGD 89 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 G YHPHG + IY L RMAQ+W++R +LI+ QGNFGS+ G PPAA RYTE RL A Sbjct: 90 TSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPPAAMRYTEARLSPVAS 149 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+DL DTVDF P YD QEP VL R+PN+LVNG GIAVGMAT+IP HNLGEV + Sbjct: 150 MMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVCE 209 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 V VID+P++ L L EII+GPDFPTG I GR GI+ Y GR +IV+R + IE+ Sbjct: 210 ALVKVIDDPEVTLGELCEIIKGPDFPTGGTICGRAGIRRGYRDGRSTIVLRAKTRIEEHK 269 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGAS 319 DR +I++TEIPYQ + ++EKIAELV E+RI I+ + D SD ++ +VI++KR A Sbjct: 270 KDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKRDAD 329 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LNQLY+++ LQ S+ ++AL KP +L +L+ F+ R V+ RRT++LL+K Sbjct: 330 PYVVLNQLYQFSPLQDSISIILLALVDGKPRELSLKELLEEFLRHRVTVIRRRTQFLLSK 389 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 AR R H + GL +A+AN+DE++RIIR S A+ LM A+ ++ + + + Sbjct: 390 ARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQ---RALGEEGF 446 Query: 440 TI-----GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + G+ T L+ VQ+ AIL + L +L L ++ + E L EI E L IL+ Sbjct: 447 AMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRILADE 506 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + + +IK+EL+++ + RRT I E + D+ ED I E MVV++SH GY+KR P Sbjct: 507 NIIRAMIKEELIAIAAKYGDERRTEISGEEIGDVNLEDLITEETMVVSISHRGYIKRTPA 566 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YRAQRRGGKG G DED + LF+ STH +LFF++LG VY +KV+ LP S ++ Sbjct: 567 STYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPELSRES 626 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+A++N+L+L++GE+I + + + + +++ AT+ G V+++ L D+ + + G Sbjct: 627 RGRAIVNLLNLSEGEKIAECIAIRDFDQQGH--FLMMATRKGLVKKSPLEDYSRPKKGGI 684 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+KL DE++ V ++++L+T G +RF S R GRN+ GV+GISLA GD Sbjct: 685 IAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIRFSESDARPM-GRNTSGVKGISLASGD 743 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT---SLKNDSSVEGNI----- 785 ++ M + AD D + + +R G E+ +DS G+I Sbjct: 744 SLVGMVV-----ADPDATLLTVCENGYGKRTNFGPNAEVVGPPPADDDSIDTGSIDTSSA 798 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E ++G + +S +R R GKG+R D+ G ++AV Sbjct: 799 EAETVVAEPPAPAEEAAAEDEGDEEGSSGSRYRTQRRGGKGLR--DIKTTTRNGTVIAVA 856 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V+D +++++++ +G L R+ EI+ R T+GV I S D+++V+V R+ DE Sbjct: 857 RVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSLDDDDKLVAVVRVPR----DE 912 Query: 906 AESTE 910 AE T+ Sbjct: 913 AEVTD 917 >gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] Length = 836 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRTRI D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] Length = 836 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRTRI D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERKAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX] gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276] gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s] gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX] gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768] gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222] gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301] gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC] gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC] Length = 836 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 351/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRTRI D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1] gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1] Length = 839 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 350/903 (38%), Positives = 529/903 (58%), Gaps = 99/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I +EM++SY+ YA++VI+GRAIPD+RDGLKPVHRR LF M +MG +K Y K A Sbjct: 15 VNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+A+IYD + +MAQ +S R++L++GQGNFGSVDGD PAA RYTE RL Sbjct: 75 RVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 ++ A LL DL K+TV+F PN+D S QEP VL A+ PN+L+NG GIAVG+AT +P HNL Sbjct: 135 KREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV D +++PD + LM+I+ GPDFPTG +I+G GI+NAY +G+G + +RGV+ Sbjct: 195 GEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAYLSGQGKLTVRGVAE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I++ SG R QI++TEIPYQVNKA ++E IAELV+EKRI I+DLRDESD+ G R+VI+L+ Sbjct: 255 IDE-SGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDLR 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A +ILN LY++T+L+S F + A+ +P+ LI +++ FV R V+ RR+++ Sbjct: 314 KDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQFVRHRITVITRRSEF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 KA +R H+L GL A+ N+D V+ IR + + A+ L+ + Sbjct: 374 DKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAK--------------- 418 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E Q AIL+++L RL L + + +E L EI++ +++LSS Sbjct: 419 -----------FSLDEAQAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSED 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + I +EL ++++ RRT+I L ++ ED I + ++V ++H YVK + + Sbjct: 468 NIRAEISRELQELREKYADKRRTQITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDA 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG+G G+ ++D D+V +F+ +TH +L F+S G Y +V+ +P GS Q++G Sbjct: 528 YRVQGRGGRGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKG 587 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L ER+T ++P E S + + +F T+ G + + +F + +G A Sbjct: 588 KAIVNLLDLRSEERVTAVIPVQEFSS---DRFFLFLTERGMIIKIPQDEFSRPRSTGVNA 644 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L D ++ V +I++TTK GQ +RF I RN++GV G+ + D V Sbjct: 645 ISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHEEQI-PLRHRNALGVIGMRMKDDDIV 703 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 SM ++ KH+ Sbjct: 704 TSMTVIEEG-----------KHL------------------------------------- 715 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 LT++ G+GKRT+ ++R R G+R K+ +V F ++IIL Sbjct: 716 -----LTITSSGYGKRTNFDEYRGHGRGTMGVRNI---KLKRNDGIVTAFSAGPEEEIIL 767 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV------------ERIRESEIV 903 +S +G +IR V +I I R+T+GV I A +RVV V + I ++EI+ Sbjct: 768 MSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDISDDIPQAEII 827 Query: 904 DEA 906 DE Sbjct: 828 DEG 830 >gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough] gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4] gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4] Length = 856 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 355/899 (39%), Positives = 545/899 (60%), Gaps = 92/899 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F ++G +N+ + K ARI Sbjct: 26 ISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSARIV 85 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+GKYHPHG++A+YDA+ RMAQ++S+R L++GQGNFGS+DGD AA RYTE R+ + Sbjct: 86 GDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMSRL 145 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A + D+ K+TVDFRPNYD + EPVVL R PN+L+NG GIAVGMATNIP HNLGE+ Sbjct: 146 AGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLGEL 205 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 + + ++D+ +D LM+ ++GPDFPTG + G+ +AY TGRG++ +RG IE+ Sbjct: 206 CNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEIEE 265 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 + IV+ EIPY +NK++++EKIA LV E+RI +ADLRDESDR+G RVVI+LKRG Sbjct: 266 RKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKRGT 325 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 D+++N LY+YT L+S + +NM+A+ +P+ L L F+ R E+++RRT+Y L Sbjct: 326 IPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYDLR 385 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA RAH+L GL IA+ N+DEVV +IR S P+ A+ LMQR Sbjct: 386 KAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR------------------ 427 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 LSE Q++AIL++RL RLT L + + +E L +I+ IL + L Sbjct: 428 --------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLR 479 Query: 499 GIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 ++++E ++D T RRT ++ + L + ED I +D+V+T+S GY+KR L Y+ Sbjct: 480 QVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQ 539 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 QRRGGKG +G+ D+DFV + + H +L F++ G +++ KV ++ GS A+G Sbjct: 540 QQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVH 599 Query: 618 LINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 + N+L L + E +TT++ F ED + +F TK G V+R+ S + + + G I Sbjct: 600 IANLLPLEKDEWVTTVLSVREFAEDR------FFLFVTKRGMVKRSSASLYARARKGGLI 653 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V ++ ++LTT G +RF +R GR++ GV+G++L+ D+ Sbjct: 654 AVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDR 712 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V++ A+ + GD D+S E Sbjct: 713 VVACAV------------------------LPGD---------DTSTE------------ 727 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 I+++S G+GKRT +R+ +R GKG++ V+ + G ++ PV D++ ++ Sbjct: 728 -----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALV 780 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE---AESTE 910 L++ +IR+ V+E+R RAT GV++ + VV +R+ E E+V+E A+S+E Sbjct: 781 LLTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSE 839 >gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] Length = 919 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 355/893 (39%), Positives = 540/893 (60%), Gaps = 90/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+ GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I IADLRDES+R G R Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ LNKA+DR H+L GL IAV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITN 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++R L+ +I EL +K++ RRT I + + + DED I + D+V+T S GYV Sbjct: 523 ILANRDLLIELIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D ++ + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + Q++G + INI L +++GE++ +++ DE S ++ Y+ ATK G +++ LS+F Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DDKYLFTATKLGIIKKTSLSEF 699 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IN +GK A L DE++ + ILL + V+F + R + R + GV+ Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+LA+ + IS + SS EG Sbjct: 759 GITLAEDETCISAS---------------------------------------SSSEG-- 777 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILT+ + GFGK T FR+ +R GKG+ + K G LV Sbjct: 778 ------------ELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VN +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVK 875 >gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70] gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s] gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923] gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2] gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150] gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023] Length = 836 Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust. Identities = 350/892 (39%), Positives = 528/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL ++A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRTRI D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae] gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae] Length = 919 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 356/893 (39%), Positives = 540/893 (60%), Gaps = 90/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ GI + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 69 EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R LI+G GNFGS+DGD AA R Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +L+ + KDTVDF NYD + +EP VL +R+PN+LV+GG GIAVGMAT+ Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A+ NP+I + +ME + GPDFPTGA+I+G GIK AY TG+GSI Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++ IE + +I+V+EIPY++ K ++EKIA+L+++K I IADLRDES+R G R Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 ++I++K+G ++ILN+LYR T LQS ++VN VAL +P+ + L+ ++ +E VV Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ LNKA DR H+L GL IAV N+DEV++II+ S + A+ L R Sbjct: 429 TRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSAR--------- 479 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE QT+AI+++RL RLTGL D + E+ +L EI+ + Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITN 522 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548 IL++R L+ +I EL +K++ RRT I + + + DED I + D+V+T S GYV Sbjct: 523 ILANRDLLIDLIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L Y+ QRRGG G + + ++D ++ + +THT +L F++ G VY+ + +P Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642 Query: 609 GSPQARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + Q++G + INI L +++GE++ +++ DE S ++ Y+ ATK G +++ LS+F Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAV--DEYS-DDKYLFTATKLGIIKKTSLSEF 699 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 IN +GK A L DE++ + ILL + V+F + R + R + GV+ Sbjct: 700 QIININGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVK 758 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI+LA+ + IS + SS EG Sbjct: 759 GITLAEDETCISAS---------------------------------------SSSEG-- 777 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 + ILT+ + GFGK T FR+ +R GKG+ + K G LV Sbjct: 778 ------------ELILTIGKNGFGKITHHSLFRLVHRGGKGVIGINSDK---AGNLVFAR 822 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VN +D+I++++ G IR+P+ +I RATKGV + + K E++ +VE ++ Sbjct: 823 FVNPHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVK 875 >gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145] gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145] Length = 899 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 358/923 (38%), Positives = 550/923 (59%), Gaps = 101/923 (10%) Query: 3 EHIISSDEEEEK-----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51 E + D+EE K G++ V + +EM+NS+L YA++VI+ RA+PD RDGLKP Sbjct: 47 EEVAPQDKEEYKVQSQLILESFEGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKP 106 Query: 52 VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111 VHRRIL+ M+++G+ ++ ++ K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R L+ Sbjct: 107 VHRRILYDMLELGITYSSQHRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLV 166 Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171 +G GNFGS+DGD AA RYTE R+ K A +LD + KDTVDF NYD S EPVVL +R+ Sbjct: 167 DGHGNFGSIDGDSAAAMRYTEARMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRF 226 Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231 PN+LV+G GIAVGMAT IP HNL E ++ +A N +I + LM I+GPDFPTGA I Sbjct: 227 PNLLVSGATGIAVGMATEIPPHNLSETINATIAFARNNEITTEELMIHIKGPDFPTGATI 286 Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291 LG GI + Y TG+G I +R + IE+ + + +I+VTEIPY V K ++EKI EL ++K Sbjct: 287 LGVKGILDMYETGKGKIPVRSKTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDK 346 Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + I +LRDES+R+G R+VI++K+G + V+LN+L++ + LQ+ + N+VAL +P+ Sbjct: 347 VVEGIGELRDESNREGIRIVIDVKKGFNPHVLLNKLFQKSYLQTNVNANLVALVNGEPKL 406 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 L IL ++ + EVV RR K+ L KA D+ H+L GL IAV N+DEVV+II+ S N Sbjct: 407 LNLKQILNIYLNHQIEVVTRRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDA 466 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 A+ L R +N L+E QT+AIL++ L RLTGL + Sbjct: 467 IAQERLGTR-FN-------------------------LTEKQTKAILDMSLRRLTGLNIE 500 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDE 530 + E++ L EI IL SR +L+ +I EL +K++ RRT I E + + DE Sbjct: 501 KMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGDKRRTEIDESAISSISDE 560 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 D I +V+T S GYVKR+ L Y Q RGG G + + +D ++ + +THT ++ Sbjct: 561 DLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNTMKTYADDDISTILQTTTHTDLM 620 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLN--QGERITTIMPFPEDESSWNNLY 647 F++LG VY+ + ++P GS Q++G INI+ SLN +GE++ +++ E+ + Y Sbjct: 621 LFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEKEGEKVVSLLAV---ETYSDEQY 677 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 +V T++G +++ ++S + I +GK A KL D +++ N+IL+ + V+ Sbjct: 678 LVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAFIVEDGNEILIASNGKNVVK 737 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767 F + +R GR+S GVRGI+LA+G +V++ A +D D G Sbjct: 738 FSSNDLRPL-GRSSFGVRGITLAEGKKVLT------ASSDKD-----------------G 773 Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827 D FIL++ KGFGK T S +FR+ R GKG+ Sbjct: 774 D------------------------------FILSIGTKGFGKLTPSEEFRLIKRGGKGV 803 Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 A + K G L+ V ND+ ++++ GT IR+ +++I + SRATKGV I + Sbjct: 804 TAINADK---AGDLIFAKFVKPNDEALIITAAGTTIRILISQISVTSRATKGVKIINLRD 860 Query: 888 DERVVSVERIRESEIVDEAESTE 910 ++ +++VE ++ + +++A + E Sbjct: 861 NDEIIAVEIVKNEQELEKALTQE 883 >gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219] gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219] Length = 828 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 347/875 (39%), Positives = 528/875 (60%), Gaps = 87/875 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++ E++ +L Y+++VI+ RA+PD+RDGLKPV RRILF M +M +K Y KCA Sbjct: 19 ITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNGPDKPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+W++R L++G GNFGS+DGD AA RYTE R+ Sbjct: 79 RIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L DL KDTVD NYDG +EP+VL AR+PN+LVNG GIAVGMATN+ HNL Sbjct: 139 SKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGMATNVAPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +D +A ++NP+I + LM+ ++GPDFPTG ILGR+GI+ A+ TGRGSIV+R +H Sbjct: 199 KETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYILGRSGIRKAFETGRGSIVMRAKTH 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 E+ + + +IVV EIPY VNKA+++E+I L REK I I DLRDES+ +G RVV+EL+ Sbjct: 259 FEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNMKGIRVVVELR 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+V+LNQLYR T+LQS F VN V L P + +LK ++ F+ EV+ RRT + Sbjct: 319 KDVQAEVVLNQLYRMTALQSNFGVNNVVLFDGAPRLAGMKELLKGYIDFQLEVIRRRTAF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DRAH+L GL IAV LDEV+ IR S + + A LM + Sbjct: 379 ELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNK--------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q +AIL+++ RLTGL RD I NE L ++I + DIL+ + Sbjct: 424 -----------FPLDEIQAKAILDMQFRRLTGLERDKIENEYQDLLLKIADYEDILAHKE 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R++ I+K EL +K + +PRR+ I++ +MEDED I ED++VT+S GYVKR+ + Sbjct: 473 RVIDIVKNELTEIKAKYGSPRRSEIIDADAEMEDEDLIPVEDIMVTLSTNGYVKRLTTNT 532 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y Q RGGKG G+ + +D + + +STH +L F++ G V++ + + +P S ++G Sbjct: 533 YSVQNRGGKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFRLRGFNIPNFSRTSKG 592 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 +IN++++++ E++ ++P +++ L+ F TK G V+R +S+F I ++GK A Sbjct: 593 IPIINLVNMDKDEKVKAMVPVKKNDEQTKFLF--FVTKKGIVKRTAISEFENIMKNGKKA 650 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D++ V+ + ++L+ G+ VR +R GR++ GV+G + G V Sbjct: 651 ILLNEDDQLAFVKPTDGQAEVLIAGANGKAVRILEDKVRP-QGRSAHGVKGFN-TDGSSV 708 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + +A L E L + Sbjct: 709 VGVATTL---------------------------------------------EGFNVLTV 723 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQII 854 E+ I VS S FR++NR KG++A +KINE G L+++ V+D+ ++ Sbjct: 724 TEKGIGKVS--------SIASFRLTNRGSKGVKA---AKINEKTGDLISMKAVSDDQDVM 772 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++++ G +IR+ +++I +SR++ GV + +D+ Sbjct: 773 IMTEGGIVIRISLDQIAESSRSSMGVHLIRVDQDK 807 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 64/108 (59%), Gaps = 6/108 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T+S G+ KR ++ + + NR GKGI+ D++K + I +V ++ +D ++L Sbjct: 513 EDIMVTLSTNGYVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIE---SVINMSTHDFLLLF 569 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTA---KDERVVSVERIRESE 901 ++KG + R+ I SR +KG+ I + KDE+V ++ +++++ Sbjct: 570 TNKGRVFRLRGFNIPNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKND 617 >gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107] gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107] Length = 876 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 360/902 (39%), Positives = 534/902 (59%), Gaps = 63/902 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q LL+D+ +TVD+ N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 QALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG +A+I+NP+I LM +I GPDFPTG ILGRTGI+ Y +GRGS+ +RGV+ Sbjct: 199 LNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTGIRETYLSGRGSVTMRGVA 258 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E DR+ +++T +PYQ NKAA++E+IAE+V +K++ I+D+RDESDR G R+ Sbjct: 259 EVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR +L R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+LGII++EL +++ PRRT I++ +ED D I E VV ++ GY+KR Sbjct: 473 LGRRERVLGIIQEELGQLRERHSVPRRTEILDLAGGLEDIDLIANERSVVLLTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E IT+++ E + L + T+ G ++R +LS F I Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ +K G + F ++ +R GR + GVR ++ Sbjct: 650 NGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLADGELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L KGD ++SM ++ AD ++A + + + + EG Sbjct: 709 LRKGDSLVSMDVLPAELAD---------QIAASADDVGDGDDAGDVAETAVAAEG----- 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L S G GKR FR+ R+G G+RA + LV + + Sbjct: 755 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLRVLG 803 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907 ++++LVS+KG ++R + I SRA GV + K +R+ V + E+E D+ E Sbjct: 804 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLADVVLVPPEAETDDDNE 863 Query: 908 ST 909 ++ Sbjct: 864 AS 865 >gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] Length = 809 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 371/893 (41%), Positives = 532/893 (59%), Gaps = 94/893 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+Q G+ N+K+ K Sbjct: 3 GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+A+IYDA+ R+ Q W++R L++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L DL K+TV +PNYD + EP VL + PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID PDI LD +M + GPDFPTG I R GI+ AYATG + +RG + Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI-SRQGIREAYATGHAGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 I++ +G R QIV+TEIPYQVNK +++ I+ + + +I DI+ LRDESDR + R+V+E Sbjct: 242 RIDEKNG-RAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 LKRGA ++LNQLY+YT LQS F+V N+ +NG +P LI ++AF+ R +VV RR Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIVNG-EPRVLPLIDTMRAFLDHRRDVVTRR 359 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA +RAH+L GL A+ ++DEV+ IR S AR LMQR Sbjct: 360 TQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQR------------ 407 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 L+E+Q +AIL++RL RL GL R+ + E + L I IL Sbjct: 408 --------------FTLTEIQAQAILDMRLQRLVGLEREKLVAEYDELQKVIARLRSILG 453 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L IK+E+ ++D RR+ I + D+ ED I EDMV+T++ GY+KR Sbjct: 454 DERLLWREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTK 513 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP Sbjct: 514 LDAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRD 573 Query: 613 ARGKALINIL-SLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G + N++ +L + E I +++ F E S VFATK G V++ ++++ I Sbjct: 574 AKGTHIRNLIPALREDENIASVLSVKGFNEPGS------FVFATKRGMVKKTLITEYGNI 627 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA+ L DE++ V+ +D++L TK GQ +RF + +R GR + GV GI Sbjct: 628 TSAGLIAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRFAATEVR-DTGRATQGVIGIR 686 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD+V+SMA+V S E Sbjct: 687 LREGDEVVSMALV-------------------------------------------PSGE 703 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 EL L +SE G GKRT D+ R G G+ DV+ ++ G LVA+ V Sbjct: 704 ESSEL-------LAISECGLGKRTPVSDYPSKGRGGLGVITLDVT--DKTGKLVALTHVA 754 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 N++++++++KGT+IR V E+R+ R +GV + + + +RV+S IR + Sbjct: 755 GNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINLGEKDRVISAFPIRRED 807 >gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551] gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551] Length = 861 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 369/903 (40%), Positives = 530/903 (58%), Gaps = 87/903 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV + K + Sbjct: 19 VQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKSS 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIYDALARMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 79 SIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL+D+ KDTVDF+ NYD QEPVVL + +PN+LVNG GIAVGM+TNIP HNL Sbjct: 139 APIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D +I+NPD ++ LME ++GPDFPTGA I+G+ + AY TGRG I +R Sbjct: 199 GEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIVGKNAVHKAYKTGRGRIRVRAEFE 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +++ D + IV+TE+PYQ NKA ++E+IA+ V + +I I DLRDESDR G RVV+ELK Sbjct: 259 VDE---DGDNIVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ DV+ NQL + L+S F V +AL +P TL LK ++ R EVV RR++Y Sbjct: 316 RGANPDVVKNQLLEH-HLESTFGVINLALVDGQPRVLTLKETLKEYLDHRREVVRRRSEY 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G A+ N+D+VV IR S + + A+ L Sbjct: 375 ELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALR----------------- 417 Query: 436 DSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T+ DG T SE Q I+ ++L LT + +I++E + I +IL Sbjct: 418 -GEMTVEVDGEPLPTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEIL 476 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ L +IK EL ++KDE D RRT +E + ED I ED+VV V+ Y+KR+ Sbjct: 477 NNPDELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEEDVVVVVTEDDYIKRM 536 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL +RAQ RGGKG G +++ D V+ +F+ STH +L+F++ G VYK K +++P S Sbjct: 537 PLDTFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSR 596 Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARGK+ +N+L L+ GE IT ++ EDE+ + Y+ AT++G V+R + F I Sbjct: 597 TARGKSAVNLLELDDGEEITAVVNTADIEDET---DKYLTMATQNGYVKRTSVEKFQNIL 653 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA KLD DE+ VE +D++L ++ G +RF S +R GR++ GVRG+ L Sbjct: 654 TTGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAM-GRSARGVRGMKL 712 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+++ +A V D D Sbjct: 713 EGDDELVGVAAV---DED------------------------------------------ 727 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + ++LTV++ G+GKR+ +R +R+GKG+ D+ + G + A+ V Sbjct: 728 ------RHNWVLTVTQNGYGKRSDIERYRRQSRNGKGL--IDIKTNDRNGPVCAMETVGY 779 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE--RIRESEIVDEAE 907 D + ++S+ G ++R PV +I R T GV + + + V SV+ + E+ +EA Sbjct: 780 GDHLFVMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEAS 839 Query: 908 STE 910 E Sbjct: 840 DEE 842 >gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] Length = 865 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 347/877 (39%), Positives = 534/877 (60%), Gaps = 66/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Sbjct: 14 EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G ++I NP I+ L EII+GPDFPTG ILGR GI+ + TG+GSI Sbjct: 194 IPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRDGIRETFKTGKGSIT 253 Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE K++G +++ +++TE+P+Q NKAA++E+IA+LV EK++ I+D+RDESDR Sbjct: 254 MRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTTLSLRKMLDVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + +AR +L Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH---- 429 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS +Q+ AIL+++L RLT L D I+ E N L +I Sbjct: 430 ----------------------KLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKIN 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL+S+ R+ II +EL + + +PR+T I++ ++D D I + VV ++ Sbjct: 468 FYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + + RG +G++G +++D V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G + +L + + E+IT+++ +S ++ Y++ TK G ++R LS F Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLMLTKAGFIKRTALSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + + +L+ +K G + F I+ +R GR + G Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ ++L +GD ++SM ++ ++ Q I TE++ D +VE Sbjct: 704 VKSMNLREGDNLVSMDVL-------------TSNLVDQLAKIEDLTEDL-----DDNVEE 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N S+ ++L S G GKR FR+ R+G G+RA ++ LV Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD--QLVC 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + + ++++LV++KG ++R ++I SRA GV Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGV 831 >gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus DSM 14838] gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus DSM 14838] Length = 816 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 333/862 (38%), Positives = 517/862 (59%), Gaps = 86/862 (9%) Query: 49 LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108 ++P ILFGMM +G +K Y K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R Sbjct: 1 MEPKGFEILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRY 60 Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 ++++GQGN+GSVDGD AA RYTECRL+K ++ DL K+TVD + N+D S QEP V+ Sbjct: 61 MVVDGQGNYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMP 120 Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228 R PN+LVNG GIAVGMATN+PTHNL EV+D C+A I+N DI+++ LM ++ PDFPTG Sbjct: 121 TRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTG 180 Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288 I G +G++ AY TGRG +++R + IE TS ++IV+TEIPY VNKA +++ IA+L Sbjct: 181 GYIYGMSGVREAYLTGRGRVIMRARAEIE-TSSTHDKIVITEIPYGVNKAELIKNIADLA 239 Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348 +K+I I++ DESDR+G R+VI++KR A+A V+LN+LY+ T LQ+ FSVN VAL + Sbjct: 240 NDKKIEGISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGR 299 Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408 P L ++K FV R EVV+RRT+Y L KA++RAH+L GL IA N+DEV+RIIR + Sbjct: 300 PRLLNLKDMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAK 359 Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468 P A L++R L+E+Q+RAI+E+RL +LTGL Sbjct: 360 TPNDAIVGLIER--------------------------FQLTEIQSRAIVEMRLRQLTGL 393 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 +D + E + I +ILS+ +I EL+ VK + RR+ IV + Sbjct: 394 MQDQLHAEYEEVMKMIAYYEEILSNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFN 453 Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 ED ++M++T+SH+GY+KR PLS +RAQ RGG G G RD DF+ ++ + H + Sbjct: 454 PEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNT 513 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNL 646 ++FF+ G Y KV+ +P G+ ++G+A+ N+L+++ + + + D N+ Sbjct: 514 MMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSH 573 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 YV+F TK+G +++ L + + ++G A+ + D ++ V +N+I++ + G+ + Sbjct: 574 YVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAI 633 Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRL 764 RF SA+RV GR + GVRG++L + D+V+ M + +A Sbjct: 634 RFHESAVRVM-GRTATGVRGMTLDEDGQDEVVGMICIKDPEA------------------ 674 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 + I+ VSE+G+GKR+ D+R +NR G Sbjct: 675 ---------------------------------ETIMVVSEQGYGKRSDIEDYRKTNRGG 701 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KG++ +++ ++ G LV + V D++ +++++ G IR+ V ++RI RAT+GV + + Sbjct: 702 KGVKTMNIT--DKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLIN 759 Query: 885 TAK-DERVVSVERIRESEIVDE 905 K ++ + SV ++ + DE Sbjct: 760 LEKRNDEIGSVCKVTSESMEDE 781 >gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074] Length = 836 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 350/892 (39%), Positives = 526/892 (58%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+I EL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQ 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRTRI D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] Length = 824 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 347/879 (39%), Positives = 516/879 (58%), Gaps = 82/879 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +V + +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV + K + Sbjct: 16 VKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVTSGSGHRKSS 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+ MG YHPHG++ IYDAL RMAQD+S+R L++GQGNFGSVDGDP AA RYTE R+ Sbjct: 76 NIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTV F+ NYD EP VL + +PN+LVNG GIAVGM+TN+P HNL Sbjct: 136 APIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGMSTNVPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + +ID PD + LME ++GPDFPT A I+GR +K AY TGRG + +R H Sbjct: 196 GEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQAYQTGRGRVRMRAEYH 255 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E ++G R+ IV+TE+PYQ NK+ ++E+IA+ VR+ ++ I DLRDESDR G R+VI+LK Sbjct: 256 VE-SNGRRDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDRNGVRIVIDLK 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+ DV+ N+L + L+ FSV +AL +P+ TL +L +V+ R+EVV RR+++ Sbjct: 315 QKANTDVVENRLLE-SHLEKTFSVINLALVDGEPKVLTLKELLAEYVSHRKEVVRRRSEH 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G A+ N DEVV +I+ + + + A +E ++ +++ Sbjct: 374 DLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAA-KETLKSAFD------------ 420 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S+ Q I+ ++L LT + DI +E + I+ +IL S Sbjct: 421 -------------FSQDQADHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQ 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LL +IK EL +K + RRT +E + DED I ED VV +S Y+KRVP Sbjct: 468 ELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVVVLSEGDYIKRVPAET 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + AQ RGGKG G ++D D V+ +F STH +L F+ G VY+ KV+++P S ARG Sbjct: 528 FDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARG 587 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + +NIL L+ GE I+ ++ + + ++ Y+ AT++G V+R + +F I +G IA Sbjct: 588 TSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRTSVGEFGNILSTGIIA 647 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L+ D + VE +D++L ++ G +RF +R GRN+ GVRG+ L D++ Sbjct: 648 IDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAM-GRNARGVRGMDLDAADRI 706 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +A V D Sbjct: 707 AGVAAVESED-------------------------------------------------- 716 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++ +LTV+E G+GKRT ++R +R+GKG+ D+ + G +V+V V D+D +++ Sbjct: 717 -DRSLLTVTEFGYGKRTRVGEYRSQSRNGKGL--VDIKTGDRNGDVVSVDAVGDDDSLVV 773 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +S G +I++PV+EI R TKGV I + + V V Sbjct: 774 MSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGV 812 >gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] Length = 823 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 374/909 (41%), Positives = 527/909 (57%), Gaps = 97/909 (10%) Query: 6 ISSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 +SSD E G+T+ V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ Sbjct: 1 MSSDVPEGPGVTADAARVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M +MGV + K + + GEVMG YHPHG++AIYD L RMAQD+S+R L++GQGNFG Sbjct: 61 AMHEMGVSSGSSHRKSSSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFG 120 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGDP AA RYTE R+ A LL D+ KDTVDF+ NYD +EP VL + +PN+LVNG Sbjct: 121 SMDGDPAAAMRYTEARMAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNG 180 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGM+TNIP HNLGEV+D + +IDNPD ++ LME ++GPDFPTGA I+G+ I Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIVGKNAIH 240 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AYATGRG + +R E+T R +IV+TEIP+Q NKA M+E+IA+ V E I ++D Sbjct: 241 AAYATGRGRLTVRAEYEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESDR G RVVIE KRGA+ DV+ NQL + L+S F V +AL +P TL L Sbjct: 301 LRDESDRDGVRVVIECKRGANVDVVENQLLDH-HLESTFGVINLALVDGEPRVLTLKETL 359 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + +VA R+EVV RR+++ L +A DRAH+L G A+ N+D VV +IR S + + A+ L Sbjct: 360 EEYVAHRKEVVRRRSEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALE 419 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + T S Q + I+ ++L LT + ++ +E Sbjct: 420 E--------------------------TFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYE 453 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + EI+ IL+ S LL +IK EL +VKDE D RRT IVE + ED I E+ Sbjct: 454 EVEAEIERLETILNDESELLDVIKDELRAVKDEYDDDRRTSIVEDDGTVTREDLIPEEEC 513 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V V+ Y+KR+P + AQ RGGKG G ++ D V+ +F +TH +L F++ G V Sbjct: 514 LVVVTEDDYIKRMPADRFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQV 573 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHG 655 Y+ + + +P S ARGK+ +N+++ + GE IT ++ F +DE + AT+ G Sbjct: 574 YRLRTYEIPEMSRTARGKSAVNLINFDDGEEITAVVSMDEFDDDEC------ITMATRQG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V+R S+F I +G IA KL+ DE++ E+D+++ T+ G +RF + R Sbjct: 628 YVKRTCCSEFENILSTGIIAAKLEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQ 687 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GVRGI L GD V + A ++DER Sbjct: 688 M-GRTARGVRGIDLRDGDNVAGVV----ATDEHDERA----------------------- 719 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +LTV+E+G+GKRT ++R +R GKG+ D+ Sbjct: 720 ------------------------LLTVTERGYGKRTPLSEYRTQSRYGKGL--IDIKTG 753 Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + G + AV V ++D +I++S G ++R PV ++ R T GV I A D+ V SV+ Sbjct: 754 DRNGGVTAVNAVAEDDHVIVMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVD 813 Query: 896 RIRESEIVD 904 I + I D Sbjct: 814 VIPGTAIED 822 >gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 839 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 362/914 (39%), Positives = 524/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G + +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++ KL+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D Y+ ++ R Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 EG ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814 Query: 893 SVERIRESEIVDEA 906 ++ R E E DEA Sbjct: 815 AIARNAE-EAADEA 827 >gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1] gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 836 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 349/892 (39%), Positives = 527/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQDW++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FLL+DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ N ++ ++E++ GPDFPTG +I G GI++ Y TGRG + +R Sbjct: 184 PHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ S RE I++TE+PY VNK+ ++E+IAEL+ EK + I+D+RDESD+ G RV Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A++ R +V+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ +DEVV+ IR S N E A+++L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SE Q AILELRL +LTGL D ++ E + L +I + Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II++EL + TPRRT+I D+ D ED I E +++T+S YVK Sbjct: 458 LAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIEDIISDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG+G +G M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E Y+ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGE---YLFLATKKGVVKKVSLDAFGS 634 Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S +V TE+ Sbjct: 694 VSLKNEQDFVVSCQVV---------------------------TED-------------- 712 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q +L V + GFGKR+ DFR +NR G+R+ +++ N G ++ Sbjct: 713 ------------QSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D I+L+S +G IR+ + ++R+ RAT+GV + + + + +V++E++ Sbjct: 759 SVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810 >gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215] gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9215] Length = 865 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 344/877 (39%), Positives = 531/877 (60%), Gaps = 66/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Sbjct: 14 EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G ++I NP I+ L EII+GPDFPTG ILGR GI+ + TG+GSI Sbjct: 194 IPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREGIRETFKTGKGSIT 253 Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE+ +++ +++TE+P+Q NKAA++E+IA+LV EK++ I+D+RDESDR Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR + V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR Sbjct: 314 DGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRKMLDVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + +AR +L Sbjct: 374 VETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEH---- 429 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS +Q+ AIL+++L RLT L D I+ E N L +I Sbjct: 430 ----------------------KLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKIN 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 IL+S+ R+ II +EL + + +PR+T I++ ++D D I + VV ++ Sbjct: 468 LYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + + RG +G++G +++D V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G + +L + + E+IT+++ +S ++ Y++ TK G ++R LS F Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFVDDRYLLMLTKAGFIKRTALSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + + +L+ +K G + F I+ +R GR + G Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDINELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ ++L +GD ++SM ++ ++ Q I TE++ D +VE Sbjct: 704 VKSMNLREGDNLVSMDVL-------------TSNLVDQLAKIEDLTEDL-----DDNVEE 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N S+ ++L S G GKR FR+ R+G G+RA ++ LV Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD--QLVC 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + + ++++LV++KG ++R ++I SRA GV Sbjct: 795 LKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGV 831 >gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] Length = 837 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 359/884 (40%), Positives = 522/884 (59%), Gaps = 92/884 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ S++ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M ++G+ + Y K A + G+ Sbjct: 15 IDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKKSATVVGD 74 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++++YDAL RM Q +SLR L++GQGNFGS+DGD AA RYTE RL + A Sbjct: 75 VLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEARLTRMAV 134 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ K+TVDF PN+D +EP VL A +PN+LVNG GIAVGMATNIP HNL EV+ Sbjct: 135 EMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPHNLREVIS 194 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI-EKT 259 +A+IDNP++D AL ++++GPDFPTG I GR GI + TGRG I++R + I EK Sbjct: 195 AVIALIDNPELDGPALRKLVKGPDFPTGGYIYGRAGIADYQDTGRGRIIMRARAVIEEKE 254 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 S + QIVVTE+PYQVNKA ++ IAELVR++++ I+ LRDESD+ G RVVIELKR A Sbjct: 255 SSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVVIELKRDAI 314 Query: 320 ADVILNQLYRYTSLQSLFSVNMVAL------NGYKPERFTLIGILKAFVAFREEVVVRRT 373 V+LNQLY++T++QS F V M+AL P+ TL L+ ++A R EV+VRRT Sbjct: 315 PRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHRHEVIVRRT 374 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L+KA +R H+L GL IAV N+DEV+ +IR + + TA +L R Sbjct: 375 QFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSR------------- 421 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE Q AIL +RLA+LTGL RD + EL + I E IL S Sbjct: 422 -------------FGLSERQAEAILNMRLAKLTGLERDKLEEELVEVRAFILEMRGILES 468 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R R + I+K EL+ V + RRT IV + ED I E+MVVT++H GY+KR PL Sbjct: 469 RDRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEEEMVVTITHGGYIKRTPL 528 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S+Y Q RGG+G++ +++ DF+ ++ STHT +L F+ G + KV LP Sbjct: 529 SLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNT 588 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK ++N++++ RI I+ E + +++F T++G V++ LS + +G Sbjct: 589 RGKPIVNLINVTPDTRIRAIVVTKEFSDTE---FLLFCTRNGTVKKTALSQYSNPRANGI 645 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+K++ DE++ V+ + ND++L T+ G VRF S +R GR++ GV+GI L D Sbjct: 646 KAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVREM-GRDTTGVKGIELRPSD 704 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 Q++ M ++ E T L G SE Sbjct: 705 QLVGMVVI---------------------------KREATLLVVTERGLGKCSE------ 731 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 VSE KR GKGI +++ + G ++A+ V D++ Sbjct: 732 ---------VSEYRVQKR-----------GGKGI--LTLNRTVKTGDVIALMEVVPEDEL 769 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +L++ +G IR V+EIR+ RA +GV + + + V +V R+ Sbjct: 770 MLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVSAVARV 813 Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 17/164 (10%) Query: 749 DERICYMKHMSAQRRLISGDTE--EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 D R+ +K Q GD EI S + + S+E I+EE + ++T++ Sbjct: 470 DRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEE---------EMVVTITHG 520 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+ KRT + NR G+G R + + E + + + + +++ +D G + Sbjct: 521 GYIKRTP---LSLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLK 577 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 V+E+ A R T+G I + V RIR + E TE Sbjct: 578 VHELPQAGRNTRGKPIVNLIN---VTPDTRIRAIVVTKEFSDTE 618 >gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 903 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 137/911 (15%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV NK VK ARI G+ Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+ A+YD LARMAQD+SLR L+ GQGNFGS+DGD PAA RYTE ++ Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 134 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+DL K+TVD PNYD S +EP+VL + PN++VNG GIAVGMATN+ HNL EV Sbjct: 135 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 194 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 A+ +NPD+ + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R + IE + Sbjct: 195 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 254 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + +I+VTEIPY VNKA + +KIA+LVR+KRI I D+RDES R R+VIEL+R A Sbjct: 255 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAVG 313 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +V+LN L++YT LQ+ FS+ +AL P+ TL +L+ ++ R +V+ R T++ L KA Sbjct: 314 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 373 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 R H++ GL IA N+DEVV+IIR S E A++ L R Sbjct: 374 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 413 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L E+Q++AI+++RLA+L GL + + E N L + + DIL R R + I Sbjct: 414 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 467 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 + Q+L +V D+ RRT I E + D +DED I E+ V+T+S GY++R+P+ ++AQ Sbjct: 468 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 527 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG G ++DED V +F STH+ +L F++ G VY KV+RLP G+ +G+ ++N Sbjct: 528 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 587 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 ++L +GE++ I+P +VFATK G + + L+ F + ++G A+ LD Sbjct: 588 FVALTEGEKVQAIVPV---RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 644 Query: 681 RDEILSV----------ETCTQEND----------------------------------- 695 DE++ V E +D Sbjct: 645 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 704 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 +++ TK GQ V FPIS R GR + GV+GI+L A+ D Sbjct: 705 PIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITL----------------AEGD 747 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E I + + + ILT++EKG+G Sbjct: 748 EVISLLWLKAGNK-------------------------------------ILTITEKGYG 770 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KR+ +R++ R KG+R +V+ ++IGA V V V D+ +I+ S G +IR+ + Sbjct: 771 KRSEPGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAAD 828 Query: 870 IRIASRATKGV 880 IR+ R +GV Sbjct: 829 IRLTGRNAQGV 839 >gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155] gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155] Length = 859 Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust. Identities = 346/899 (38%), Positives = 526/899 (58%), Gaps = 90/899 (10%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 +S ++++ +T I + ++YL Y+++V +GRAIPD+RDGLKP RR+LF M ++ + Sbjct: 1 MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y+KCAR+ G+V+GKYHPHG+ ++YD + RMAQD+S+R +LI+GQGNFGS+DGD Sbjct: 61 RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSA 120 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTECR+++ A LL DL K+TVD +P +DGS EP VL ARYPN+LVNG GI VG Sbjct: 121 AAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVG 180 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MAT+IP HNLGEV++ VA++D P I ++ +M+ + GPDFPT + +G GI+ Y TGR Sbjct: 181 MATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGR 240 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304 G + +RG + I + +G REQIV+TEIPY VNK M++KIAELV K I I+ L DE S Sbjct: 241 GGVHLRGRAEIIEKNG-REQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSS 299 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G RVV+ +K A A V++NQLY++T L + ++ +P+ L +L+A++ Sbjct: 300 RVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDH 359 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EV+ RR K+ L KA RAH+L GL AV ++DEV++IIR S N E A +L +R Sbjct: 360 RLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER---- 415 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS Q +AIL++RL++LTGL D++ E L I Sbjct: 416 ----------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRI 453 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 ++L++R L ++K+EL+ V+D+ RRT + G D+ ED I R +T+S+ Sbjct: 454 AHYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISN 513 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GY+KRVP +YR Q RGGKG G+ +D+DFV L TH ++FF++ G ++ KV+ Sbjct: 514 EGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVY 573 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P + ++GKA++N+L +GE + ++ D+ + +++ +T++G V++ L+ Sbjct: 574 DIPEATRVSKGKAMVNLLEFEKGEYVRAMISV--DKVDDEDRFIMMSTRNGVVKKTALAA 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F + + A+ LD D+++ + I+L+T+ G F S R GR + G Sbjct: 632 FKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRT-QGRVTRGC 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L++ DQV++M+IV ++E+I Sbjct: 691 RGIRLSESDQVVAMSIV-------------------------EESEDI------------ 713 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 L V+ KG GKR+ D+R++ R KG+R K+ E +V V Sbjct: 714 ----------------LVVTAKGMGKRSCVDDYRLTKRGAKGVRNI---KLKEGDYVVEV 754 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI--FSTAKDERVVSVERIRESE 901 + D D+II+ + +G ++R+ IR RA++GV I F A D ++S R+ E E Sbjct: 755 MMIEDTDEIIMTTMEGLMVRISAEPIRSLGRASQGVTIMKFKKASD-LIISASRVVEVE 812 >gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8] Length = 804 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 343/872 (39%), Positives = 524/872 (60%), Gaps = 91/872 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + DE+ SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N K ARI GE Sbjct: 10 VEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+A +YDAL RMA +++R LIEGQGNFGS+D DPPAA RYTE RL + A Sbjct: 70 VMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TV+ N+DG+ +E VL ++ PN+++NG GIAVGMATNIP HNL E VD Sbjct: 130 EMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVD 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + +ID+P+ ++ LM+ I+GPDFPTGAV++ + +K Y GRG I++RG H+E Sbjct: 190 ALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVHVE--D 247 Query: 261 GDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 G R ++IV+TEIPY V+KA ++E+IA++ ++ + I ++RDESD++G R+VIE+ + A+ Sbjct: 248 GKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDAN 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +VI+N LY+ T+LQ F+V M+ ++ +K P L G+++AF+ R EV+ RR +Y Sbjct: 308 EEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 + RAHV+ GL A + VV I+R S + E+AR+ LM+ Sbjct: 368 QYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ ++E Q +AIL++RL+RLT L ++++NE + L +I E +IL ++ Sbjct: 409 -------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVK 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+K+E L +K + PRRT + + ++ +E+ IV ED+V+T+SH GY+K PL+ YR+ Sbjct: 462 EIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRS 521 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q+RGGKG + + ++D V + + +S LF ++LG Y K ++L RG+ + Sbjct: 522 QKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHI 581 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-GKIAMK 677 L+L E+I + + +V ATK G ++R L +F + G A+K Sbjct: 582 TAFLNLEDTEKIVALASL-----NGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIK 636 Query: 678 LDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 ++ DEI+S E + L+ TK+G +RFP+S +R GRN+ GV+ I L GD+V+ Sbjct: 637 IEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVV 695 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 S+ ++ + Sbjct: 696 SVDVIPPGE--------------------------------------------------- 704 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ILTV+EKGFGKRT +RI R G G+R ++S +N+ G +VAV V +++I++V Sbjct: 705 EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLR--NISDVNKTGYVVAVRYVRGDEEIVVV 762 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 + G +IR PV+EI + R TKGV + D Sbjct: 763 TRNGMMIRFPVSEIGVIGRVTKGVKLIELGDD 794 >gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] Length = 820 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 351/891 (39%), Positives = 520/891 (58%), Gaps = 87/891 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I ++ DEM++SYL Y+++VI+ RA+PD RDGLKP RRIL+ M + + K+ Sbjct: 5 ENELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKH 64 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+ISG+ G +HPHG IY L RMAQ W +R L++GQGNFGSVDGDPPAA RYT Sbjct: 65 RKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYT 124 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A+ L+DDL K+TVD PNYD + EP V A++PN+L NG GIAVGMATNIP Sbjct: 125 EARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E+++ V+DNP+ + +M+++ PDFPTG +I G G+K AY TGRG I++R Sbjct: 185 PHNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYRGVKEAYHTGRGKIILR 244 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 GV +IE+ DRE +V+ +IPY VNK+ ++E+IAEL K + I+DLRDESD+ G R+V Sbjct: 245 GVVNIEEKK-DREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKRG DVI+NQLY++T LQ F NM+AL+ P + ++ ++V R EVV R Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDKGLPRTMNIKQLIGSWVDHRIEVVRR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA R H+L G A+ NLDEVV+IIR S + E A+ L++ Sbjct: 364 RTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEH----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S Q A+L+LRL +LTGL RD I++E + L +I+ +L Sbjct: 413 ---------------FEFSIKQANAVLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 +S + IIK+EL ++ + + R T+IVE DM+ ED I E ++T+S Y+KR+ Sbjct: 458 ASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRM 517 Query: 552 PLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 P+ +R QRRGG G G ++ED + L++ +TH +L F++LG Y KVW++P GS Sbjct: 518 PVDTFREQRRGGTGVVGFNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGS 577 Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +++GK L+N+LS + E I T++ E + YV+ AT++G V++ + F Sbjct: 578 RRSKGKPLVNLLSDIRSEESIATVLQTSNFEG---DRYVLMATRNGIVKKTPIDAFSNPR 634 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 R+G A+ + DE+ E ++L T G VRF +R GR + GV+G+SL Sbjct: 635 RNGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSM-GRMARGVKGVSL 693 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 GD + + + V GN Sbjct: 694 ------------------------------------KGDNDRVVGCE---VVSGN----- 709 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + +L V E GFGKR++ DFR +NR G G+R+ S+ N G +V + D Sbjct: 710 --------ETVLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERN--GKVVGAVCITD 759 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +D ++++S G +R+ + ++R+ R T+GV + + +D+ +V+++++ + Sbjct: 760 DDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKVESA 810 >gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803] gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803] Length = 878 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 360/888 (40%), Positives = 530/888 (59%), Gaps = 72/888 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 15 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 75 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 134 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL+D+ +TVD+ N+DGS QEP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 135 KALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++ G +A+I+NP++ LM +I GPDFPTG ILGRTGIK Y +GRGS+ +RGV+ Sbjct: 195 LGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGVA 254 Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE DR+ +++T +PYQ NKAAM+E+IAE+V +K++ I+D+RDESDR G R+ Sbjct: 255 AIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRI 314 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN LY+ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 315 VVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETIE 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L +R Sbjct: 375 RRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERHG-------- 426 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+VQ AIL+++L RLT L D IR E L ++I + DI Sbjct: 427 ------------------LSDVQADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKDI 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ GII+ EL ++D PRRT I++ ++D D I E VV ++ GY+KR Sbjct: 469 LGRRERVFGIIQDELGQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLKR 528 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P S Sbjct: 529 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCS 588 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E IT+++ E + L + T+ G ++R +LS F I Sbjct: 589 RTAKGTPVVQLLPIPREEMITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 645 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + GVR ++ Sbjct: 646 NGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSMN 704 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE--GNIS 786 L GD ++SM ++ AD R+ S ++DS + G++S Sbjct: 705 LRDGDALVSMDVLPVELAD---RVA-------------------QSSEDDSGEDETGDVS 742 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 + ++L S G GKR FR+ R+G G+RA E ALV + Sbjct: 743 D---------GPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TEADALVGLRV 791 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++++LVS+KG ++R + I SRA GV + K +R+ V Sbjct: 792 LGAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEV 839 Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596 +V + S LG KRVP++ +R Q+R G G + R E D + L ++ VL S G Sbjct: 748 LVASASGLG--KRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVLGAGEEVLLVSEKG 805 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 + + +P Q+R + + L++G+R++ ++ P Sbjct: 806 VIVRTSADSIP---QQSRAATGVRLQRLDKGDRLSEVVLVP 843 Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ ++E G+ KR +F ++R +G +A S+ E A+ ND+D Sbjct: 509 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFIGCNDHD 565 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 ++L SD+G +P + SR KG V + ++E + S+ + E Sbjct: 566 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLLAVSE 616 >gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58] gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58] Length = 829 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 354/892 (39%), Positives = 527/892 (59%), Gaps = 93/892 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKHR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCA+I G+ G YHPHG + IY L RMAQ W++R L++GQGNFGS+DGDP AA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL +A FL++DL KDTVD NYD + EP V A++PN+L NG GIAVGMATNIP Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE+++ + ++ NP ++ +ME++ GPDFPTG +I G GI + Y TGRG I +R Sbjct: 185 HNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIICGHEGICSTYHTGRGKIKVRA 244 Query: 253 VSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 H+E+ T RE IV+TEIPY VNK+ ++E+IA+LV +K + I+D+RDESD++G RVV Sbjct: 245 RLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRVV 304 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +ELK+G S++V++N+LY++T +Q+ F NM+AL+ P + ++ A++ R EV+ R Sbjct: 305 LELKKGESSEVMINRLYKFTDVQTTFGANMLALDKNLPRTMNIHRMISAWIRHRAEVLRR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ LNKA RAH+L G A++ LD VV+ I+ S + E A++++++ Sbjct: 365 RTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIE------------ 412 Query: 432 DLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +Y ++ Q AILELRL +LTGL + R E + L +I + Sbjct: 413 ---------------LYGFTDAQAVAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL + TPR+T I D+ D ED I E +++T+S YVK Sbjct: 458 LADEELVKDIIRTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R QRRGG G SG M+ DF+ ++ ST +L F++ G Y KVWRLP Sbjct: 518 RMPIKVFREQRRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +++GK+LIN L + GE++ I+ +S N ++ ATK G V++ L F Sbjct: 578 GERRSKGKSLINFLEGIRPGEQVAAILNV---KSFENADFLFLATKQGVVKKVPLDAFSN 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ E+D ++L TKLG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPM-GRAARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D V+S Sbjct: 694 VSLKNQEDCVVS------------------------------------------------ 705 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 CQ + Q +L V E GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 706 ----CQ-IVTDNQSVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERN--GDVLGAV 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 PV DND I+L+S +G IR+ + ++RI R+T+GV + + +V++ER+ Sbjct: 759 PVADNDSILLMSGQGQAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAMERL 810 >gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46] gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46] Length = 867 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 360/901 (39%), Positives = 520/901 (57%), Gaps = 97/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 21 VRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRRILYAMFDNGYRPERGYVKSA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG YHPHG++AIYD + RMAQ WS+R L++GQGNFGS D PAA RYTE RL Sbjct: 81 KPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARL 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF+PNYDG EPV+L +R P +L+NG GGIAVGMATNIP HNL Sbjct: 141 TPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV D +DNPD D LDA+ME I+GPDFPT A I+G GIK AY TGRGSI +R Sbjct: 201 REVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQIVGDKGIKEAYTTGRGSIRMR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN M+ IA+ V++ R+ IA + DESD + G R+ Sbjct: 261 GVTSIEQ-EGTRQSIVITELPYQVNPDRMIANIADQVKDGRLQGIASIDDESDLKWGMRI 319 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V++LKR A V+LN LY+++ LQ+ F NM+A+ P + ++ +VA + EV+V Sbjct: 320 VVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDGVPRTLRIDQMVTLYVAHQIEVIV 379 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++ RAH+L GL A+ LDEV+ +IR S +TAR LM Sbjct: 380 RRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATVDTARTGLM------------ 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AIL ++L RL L R I +EL + +EI + DI Sbjct: 428 --------------GLLDIDEIQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDI 473 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R I+K+EL V ++ RRT+IV D+ +ED I RE++VVT++ GY KR Sbjct: 474 LANPDRQRAIVKEELGEVVEKYGDDRRTQIVAAEGDVTEEDLIARENVVVTITSTGYAKR 533 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 534 TKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWILFFTNKGRVYRLKAYELPEAT 593 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ +S ++ Y+V AT G V++++L D+ Sbjct: 594 RAARGQHVANLLEFQPEERIAEVLQI---QSYQDSPYLVLATSEGKVKKSRLEDYESARS 650 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L D ++ C+ ++D+LL ++ GQ +RF S A+R GR + GV+G+ Sbjct: 651 AGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTASDDALRPM-GRATAGVQGMR 709 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D+++SM +V EE +L Sbjct: 710 FKGDDKLLSMVVV----------------------------EEEHNL------------- 728 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + T G + S Y + NR G G+ + G L+ V+ Sbjct: 729 ----------LVATTGGFGKKTKLSEYTPQ--NRGGMGVLTLKYDP--KRGPLMGALVVD 774 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++D+I V+ G +IR VNEIR SRATKGV + + A +++++R + DE E Sbjct: 775 NDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADGVELLAIDR----NVEDEGEE 830 Query: 909 T 909 T Sbjct: 831 T 831 >gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] Length = 879 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 358/906 (39%), Positives = 524/906 (57%), Gaps = 98/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 43 VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL++ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + EV+ Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVID 401 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ +DEVV +IR S + +TAR LM +L Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------NL 451 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D VQ AIL ++L RL L R I +E L +I++ DI Sbjct: 452 LDVDD----------------VQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDI 495 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRTRI+ +M ED I E++VVTV+ GY+KR Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 556 TKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGS 615 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L GE I ++ P + + Y+V AT+ G V++ L ++ + Sbjct: 616 RDSKGQHVANLLQFTPGETIQAVLSIPNYDVAK---YLVLATRSGKVKKTALQEYDSPRQ 672 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C E+DI+L +KLG ++F ++ GR + Sbjct: 673 GGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPMGRQTA 732 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ + D+++ M +V SVE Sbjct: 733 GVQGMRFREDDELLDMDVV--------------------------------------SVE 754 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + + +L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 755 TS-------------KDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEGR--GSLV 799 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V + DQ++ + G +IR VNE++ R T+GV + K + ++S+ R E + Sbjct: 800 GALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEERD- 858 Query: 903 VDEAES 908 DE+++ Sbjct: 859 -DESDN 863 >gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 899 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 354/911 (38%), Positives = 518/911 (56%), Gaps = 137/911 (15%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV NK VK ARI G+ Sbjct: 11 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+ A+YD LARMAQD+SLR L+ GQGNFGS+DGD PAA RYTE ++ Sbjct: 71 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+DL K+TVD PNYD S +EP+VL + PN++VNG GIAVGMATN+ HNL EV Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 A+ +NPD+ + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R + IE + Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 250 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + +I+VTEIPY VNKA + +KIA+LVR+KRI I D+RDES R R+VIEL+R A Sbjct: 251 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD-IRIVIELRRDAVG 309 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +V+LN L++YT LQ+ FS+ +AL P+ TL +L+ ++ R +V+ R T++ L KA Sbjct: 310 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 369 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 R H++ GL IA N+DEVV+IIR S E A++ L R Sbjct: 370 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 409 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 L E+Q++AI+++RLA+L GL + + E N L + + DIL R R + I Sbjct: 410 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 463 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 + Q+L +V D+ RRT I E + D +DED I E+ V+T+S GY++R+P+ ++AQ Sbjct: 464 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 523 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGGKG G ++DED V +F STH+ +L F++ G VY KV+RLP G+ +G+ ++N Sbjct: 524 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 583 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 ++L +GE++ I+P +VFATK G + + L+ F + ++G A+ LD Sbjct: 584 FVALTEGEKVQAIVPV---RKFGGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 640 Query: 681 RDEILSV----------ETCTQEND----------------------------------- 695 DE++ V E +D Sbjct: 641 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 700 Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 +++ TK GQ V FPIS R GR + GV+GI+L A+ D Sbjct: 701 PIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITL----------------AEGD 743 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 E I + + + ILT++EKG+G Sbjct: 744 EVISLLWLKAGNK-------------------------------------ILTITEKGYG 766 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KR+ +R++ R KG+R +V+ ++IGA V V V D+ +I+ S G +IR+ + Sbjct: 767 KRSEPGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAAD 824 Query: 870 IRIASRATKGV 880 IR+ R +GV Sbjct: 825 IRLTGRNAQGV 835 >gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805] gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805] Length = 876 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 364/905 (40%), Positives = 532/905 (58%), Gaps = 71/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL+D+ +TVD+ N+DGS QEP VL +R P +L+NG GIAVGMATNIP HN Sbjct: 139 KALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++ G +A+I+NP++ LM +I GPDFPTG ILGRTGIK Y +GRGS+ +RGV+ Sbjct: 199 LGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGVA 258 Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE DR+ +++T +PYQ NKAAM+E+IAE+V +K++ I+D+RDESDR G R+ Sbjct: 259 AIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN LY+ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR +L +R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSEVQ AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSEVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ GII+ EL ++D PRRT I++ ++D D I E VV ++ GY+KR Sbjct: 473 LGRRERVFGIIQDELAQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E IT+++ E + L + T+ G ++R +LS F I Sbjct: 593 RTAKGTPVVQLLPIPREEMITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ ++ G + F +S +R GR + GVR ++ Sbjct: 650 NGLIAIGLEEGDALTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++SM ++ AD R+ ++ + ++ +G Sbjct: 709 LRDGDALVSMDVLPVELAD---------------RVAQSGDDDSDDDEAGAASDG----- 748 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L S G GKR FR+ R+G G+RA + ALV + + Sbjct: 749 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADALVGLRVLG 797 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVERIRESEIVDE 905 ++++LVS+KG ++R + I SRA GV + K +R VV V ES+ E Sbjct: 798 AGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAESDDATE 857 Query: 906 AESTE 910 E E Sbjct: 858 GEGEE 862 >gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] - Ureaplasma urealyticum gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 840 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 352/891 (39%), Positives = 514/891 (57%), Gaps = 87/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y K A Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ A+Y + RMAQD+S+R LL++G GNFGS+DGD AA RYTE RL Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP HNL Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV A N ++ + +ME ++GPDFPTGA I G +GI + TGRGS+ IR Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIRSKYE 264 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R IVVTEIPY VNKA ++EKI ELV K+I I+DLRDES R G R+VIE+K Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LN+L++ T LQ+ FSVN +AL P + ++K + + E++VRRT + Sbjct: 325 RDVIPEVLLNKLFKTTPLQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEILVRRTNF 384 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++R H++ GL IAV N+DEV++II+ S + + A + L+QR Sbjct: 385 DLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQR--------------- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+QT+AILE+RL LTGL D ++ E L + IK+ D+L++ + Sbjct: 430 -----------FDLTELQTKAILEMRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYN 478 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II + L + ++ RRT I+ G+ ++DED I ED+VVT+S GY KR+P+ Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Q++ Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN L + + E I TI+P +++ + F T G ++R LSDF I +GKI Sbjct: 599 GIPAINFLPIEKSESILTILPI----DNYDQGSLFFTTSKGIIKRANLSDFESIRANGKI 654 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++ SV +++ + G +RF + R GR + GV+GI+L + Sbjct: 655 AITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLENDEY 713 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + H + Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++L V KG GK T D+R++ R KG+ V+ ++ G LV++ VN ++ + Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DKTGNLVSIKVVNREEEAL 778 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 +++ G +IR+ + +I + R T GV + S E V S+ ++ EI DE Sbjct: 779 IITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEINDE 829 >gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] Length = 839 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 353/911 (38%), Positives = 535/911 (58%), Gaps = 98/911 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP+VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G G+K A+ TGRG ++IR Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ G ++ IVVTE+PYQV+ + +L+K ++LV+E R+ I D+RDES R R+V Sbjct: 243 AKAEFQEIKG-KDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FSVN +AL +P+ L ++ FV R +VV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G +A D + + IIRF P+ + Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPK----------------E 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DLI D L++VQ AIL L L R+ + + E EI++ Sbjct: 406 DLIAEFD-------------LTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + +DE +N Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRA-VGRNSQGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L DTE ND V G I+ Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIG 839 E +E+ +L VSE G+GKR+ D +RI+NR GKG++ +++ + G Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KTG 759 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA+ V + + +++++ G IR+ ++ +RI RAT+GV + + + + +V ++ + Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMK 819 Query: 900 SEIVDEAESTE 910 D+ ESTE Sbjct: 820 E---DDDESTE 827 >gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] Length = 827 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 373/901 (41%), Positives = 542/901 (60%), Gaps = 103/901 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++I + +Q+SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + K+ K A Sbjct: 10 IQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSHGAKFKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+G+YHPHG+ A+YDAL RMAQ +S+R+ L++GQGNFGSVDGD AA RYTE R+ Sbjct: 70 RIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAAMRYTEARM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL DL K+TV+ NYDG+ +EP V+ R PN+L+NG GIAVGMATNIP HN Sbjct: 130 TKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPPHNP 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G A++ NP+I+L LME I+ PDFPTG I G+ GI +AYATGRG I +R +H Sbjct: 190 QEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIFGKKGIMDAYATGRGRIKVRAKTH 249 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK G+++ I++ E+PYQVNKA ++E IA LV++K I ++++RDESDR+G RVVIELK Sbjct: 250 IEK-KGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDREGIRVVIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A ++++LN L++ TS+Q F + M+++ +P F +I ILK F+ R+ +++RRT + Sbjct: 309 KDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQEPRIFGIIDILKHFINHRKTIIIRRTIF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ RAH+L GL A+ +DE++R+I+ S N E AR L+ Sbjct: 369 DLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSE--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S +Q ++I+++RL RLTGL R+ I NEL L I IL S Sbjct: 414 -----------FDFSVIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEE 462 Query: 496 RLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 L GII QE DEL T RRT + + D++ ED I E MVVT++H GY+KRV Sbjct: 463 VLHGIIDQEF----DELLTIYTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRV 518 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 PL+ Y Q+RGGKG+ V ++DF+ F +TH ++LF + G ++ KV+++P GS Sbjct: 519 PLAQYEKQKRGGKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSR 578 Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+GKA++N+L+L E+I +I P F E++S +VF TK G V+R LS+F I Sbjct: 579 TAKGKAVVNLLNLVADEQIQSINPTTDFSEEKS------LVFFTKKGVVKRTNLSEFSNI 632 Query: 669 NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +G A+ LD D I++ + + + + TK+ QC++F + R GRN+ GVRGI Sbjct: 633 RSNGVKAILLDDDDSIITAKIADKSIKYLFIMTKMSQCIKFDMEKTR-DQGRNTRGVRGI 691 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 HA+ D V+ NI Sbjct: 692 KFK------------HAE--------------------------------DEVVDANI-- 705 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFP 846 + EQ IL VSEKG GKRT + ++R++NR G G+ A ++ + G +V Sbjct: 706 -----IANDEQEILVVSEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYVVGCLM 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V++ ++ ++ G +IRV + I +SR T GV I K + V SV R + I D+ Sbjct: 759 VDEEMDMMALTKAGKMIRVDMQTISKSSRNTSGVYI---VKGDDVASVSRCPKQPIEDDE 815 Query: 907 E 907 E Sbjct: 816 E 816 >gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 836 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 353/892 (39%), Positives = 512/892 (57%), Gaps = 92/892 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 12 IEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCS 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IY + R+AQ W+LR LI+GQGNFGS D PAA RYTEC+L Sbjct: 72 RVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDMPAAMRYTECKL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF+PNYDG QEP+VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 132 APIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NP+ L+AL+ ++GPDFPTGA+I+GR GI +AY TGRGSI +R Sbjct: 192 REVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIVGRRGIDDAYRTGRGSITMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 + +E+ + R+ +VVTE+PYQVN + IAE V+E RI IAD+RDE S R G R+ Sbjct: 252 AIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADVRDESSSRVGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P L ++ +VA + EVVV Sbjct: 312 VIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDGVPRTLRLDQFVRHYVAHQIEVVV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +RAH+L L A+ +DEV+ +IR SP+ A+ LM Sbjct: 372 RRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGGLM------------ 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q +AIL+++L +L L R I +E ++L I + I Sbjct: 420 --------------ALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + R+T I+ DM ED + EDMVVT++ GY KR Sbjct: 466 LASPERQRTIVFDELSEIVSKYGDERKTEIIAYEGDMSIEDLLAEEDMVVTITRGGYAKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YRAQ+RGGKG G +R +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 526 TNTDLYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSG 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ L N+L++ E + ++ + E + Y+V AT+ G V++ +LS++ Sbjct: 586 RDARGQHLANLLAMQPDEVVMEVLDLRDYEVAP---YLVLATRSGLVKKTRLSEYDSPRS 642 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE+++ ++E+D+LL ++ Q +RF S A+R GR + GV G+ Sbjct: 643 GGLIAINLREDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEALRPM-GRATSGVIGMR 701 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD++++M R+ GD Sbjct: 702 FLGGDELLAM-----------------------NRIGDGDD------------------- 719 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L +E G+ KRT + + + R GKG+ + ++ G LV V Sbjct: 720 -----------VLIATEGGYAKRTPADQYPVQGRGGKGVLTAKI--VSARGKLVGAAMVR 766 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D++ ++ G +IR EI+ + R T GV + + A+ + VV++ R E+ Sbjct: 767 PEDEVFAITSAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVALARNAEA 818 >gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109] gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109] Length = 874 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 363/901 (40%), Positives = 532/901 (59%), Gaps = 73/901 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQ++S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 RALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG A+I NP+I L+++I GPDFPTG ILGR GI+ Y GRGS+ +RGV+ Sbjct: 199 LNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGVA 258 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +IE DR+ +++TE+PYQ NKAA++E+IAELV +K++ I+D+RDESDR G R+ Sbjct: 259 NIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ GII+ EL +++ T RRT I++ + D D I E VV ++ GY+KR Sbjct: 473 LGRRERVFGIIQSELGQLQERYPTRRRTEILDLGGGLSDIDLIANERSVVLLTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + ED V + H +++ FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E ITT++P E ++ +V T+ G ++R +LS F I Sbjct: 593 RAAKGTPVVQLLPIPREEAITTLIPVSE---FSDDTDLVMLTRGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ +K G + F +S +R GR + GVR ++ Sbjct: 650 NGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L GD ++SM ++ AD ++A S + EE D++ EG Sbjct: 709 LRDGDALVSMDVLPVELAD---------QVAA-----SAEDEE------DAASEG----- 743 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L S G GKR FR+ R+G G+RA + LV + + Sbjct: 744 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDTDELVGLSVLG 792 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++++LVS+KG ++R + I SRA GV + K +R++ V + D A+ Sbjct: 793 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDPADD 852 Query: 909 T 909 T Sbjct: 853 T 853 >gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica] Length = 855 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 354/894 (39%), Positives = 526/894 (58%), Gaps = 97/894 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ +E+ S+L Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+GV K +VKCA Sbjct: 6 IKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAHVKCA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GE MG +HPHG+ +IY L M Q WS+R +L++GQGNFGSV+GD A+ RYTE RL Sbjct: 66 KIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +++DL K TVDF+PNYDGS +EP VL + +PN LVNGG GIAVGMATN+ HNL Sbjct: 126 HPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLAPHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG A ID PDI L LM+ I+GPDFP I G GI+ + TGRGS+ +RG Sbjct: 186 GEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIRGIEEYFRTGRGSMRLRGKVE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + IV+ E+PY VN+A + E+IAELV EK + I+ +RD SD + R+ IELK Sbjct: 246 IEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEE-TRIEIELK 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A V++ QL++ T+L++ FSVNM+A++ +P++ +L + A++ R +V++RRT++ Sbjct: 305 RDARPQVVVAQLFKLTALETSFSVNMLAIHQNRPKQLSLKEAIDAYIEHRRDVIIRRTRF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KA +RA +L +A+ +LD+ +RIIR S N + AR EL + Sbjct: 365 LLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEAR-ELQGDRY------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE Q AILELRL +LTG+ +D ++ E + + IEIK+ LDIL+ Sbjct: 411 ------------VFSERQVNAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDILAREV 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L IIK EL ++D+ TPR+ I+ ++ ED I + M+VT+SH GYVKR P + Sbjct: 459 RVLTIIKDELRVIRDKYATPRKCPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRTPATE 518 Query: 556 YRAQRRGGKGRSGV----VMRDE--DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 YR Q RGGKG G+ +DE DFV LF V H +LFF++ G VY E+V+ LP G Sbjct: 519 YRLQGRGGKGLKGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFELPEG 578 Query: 610 SPQARGKALINILSLNQGERITTIMPFPE-DESSWNNL-------YVVFATKHGNVRRNK 661 S + G+++ N+L+L E+I ++ + + N++ +V FAT++G V++ Sbjct: 579 SRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKVKKTA 638 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRN 720 L+DF + G IA+ LD ++++ V + E++I+L T+ G ++F ++ GR Sbjct: 639 LNDFRNYRKDGIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRPQGRA 698 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI L K D V+ MAIV Sbjct: 699 TAGVTGIRLRKDDYVVGMAIV--------------------------------------- 719 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 SEE +L SE G GKRT+ +R R G G++ +V+ ++ G Sbjct: 720 -----SEE---------TMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVT--DKTGK 763 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +V V + D+++L++ G IR+ VNEIR R +GV + + + E++ + Sbjct: 764 VVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKEGEKLQDI 817 >gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] Length = 841 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 353/911 (38%), Positives = 535/911 (58%), Gaps = 98/911 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP+VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G G+K A+ TGRG ++IR Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ G ++ IVVTE+PYQV+ + +L+K ++LV+E R+ I D+RDES R R+V Sbjct: 243 AKAEFQEIKG-KDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FSVN +AL +P+ L ++ FV R +VV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G +A D + + IIRF P+ + Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPK----------------E 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DLI D L++VQ AIL L L R+ + + E EI++ Sbjct: 406 DLIAEFD-------------LTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ ++I + +DE +N Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRA-VGRNSQGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L DTE ND V G I+ Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIG 839 E +E+ +L VSE G+GKR+ D +RI+NR GKG++ +++ + G Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KTG 759 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA+ V + + +++++ G IR+ ++ +RI RAT+GV + + + + +V ++ + Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVMK 819 Query: 900 SEIVDEAESTE 910 D+ ESTE Sbjct: 820 E---DDDESTE 827 >gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] Length = 931 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 359/905 (39%), Positives = 530/905 (58%), Gaps = 85/905 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M G ++ Y KC+ Sbjct: 71 VDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNKCS 130 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG+YHPHG++AIYDAL R+ Q WS+R L++GQGNFGS D AA RYTECR+ Sbjct: 131 RVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTECRM 190 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ D+ ++TVDF PNYDG +P VL +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 191 APLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPHNL 250 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV D ++ NP+ +AL+E I GPDFPTGA+I+G+ G+++AY TGRGSI +R Sbjct: 251 REVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKRGVEDAYRTGRGSITMR 310 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN A+ EKIA LV++ ++ IAD+RDE S R G R+ Sbjct: 311 AVVNVEEIQG-RQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTGQRL 369 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P + ++ +V + +V+V Sbjct: 370 VIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPISAFIRYWVEHQIDVIV 429 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A R H+L GL A+ LDEV+ +IR SP + AR L Sbjct: 430 RRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDAR-------------TGL 476 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I+L+D + E+Q AILE++L RL L R I + + L +I + DI Sbjct: 477 IELLD-------------IDEIQANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDI 523 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + ++ RR++IV DM ED I ED+VVT++ GYVKR Sbjct: 524 LAKPERQRQIVSDELAEIVEKYGDDRRSQIVPFDGDMNMEDLIPEEDVVVTITRGGYVKR 583 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +S YR+QRRGGKG G +R +D V F STH +LFF++ G VY+ K + LP GS Sbjct: 584 TKVSEYRSQRRGGKGVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGS 643 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L+ GE+I +M + ++ Y++ AT++G V++ +LS++ Sbjct: 644 RDSKGQHVANLLAFQPGEQIAQVMAL---RTYADSEYLLLATRNGLVKKTRLSEYDSPRS 700 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ T ++D+LL ++ GQ VRF + ++R GR++ GV G+ Sbjct: 701 GGLIAVNLRDGDELVGAGLATHDDDVLLVSRKGQAVRFAATDDSLRPM-GRSTSGVTGMK 759 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 +GD+++SM +V K + VE E+ Sbjct: 760 FREGDELLSMNVV---------------------------------PKGANEVERGADEK 786 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 C + V E G KRT ++ R+ G++ +S+ G LV V Sbjct: 787 LC---------VFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERG--GDLVGALVVE 835 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---EIVDE 905 + D++++V +KG ++R V E+R R T+GV + K + +V+V R E EI D+ Sbjct: 836 NRDEVMVVMEKGKIVRSAVAEVRETGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDDD 895 Query: 906 AESTE 910 A +E Sbjct: 896 AVVSE 900 >gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] Length = 830 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 348/892 (39%), Positives = 529/892 (59%), Gaps = 91/892 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRILF M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A L++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ PD ++ ++E++ GPDFPTG +I G GI++ Y TGRG I +R Sbjct: 184 PHNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKLR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 HIE+ + RE I++TE+PY VNK+ ++E+IA+LV +K + I D+RDESD+ G RV Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S+++++N+LY++T +Q F NM+AL+ P + ++ A++ R EV+ Sbjct: 304 VLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ LD++VR IR S + E A+ +L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q+ AILELRL +LTGL + I+ E + L +I + Sbjct: 413 ---------------NFGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL ++ TPRRT I D+ D ED I E +++T+S YVK Sbjct: 458 LADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDIITNEPVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E N ++ ATK G V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKQGVVKKVSLDAFSN 634 Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE++ +V ++E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D+V++ IV K+D SV Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------KDDQSV---- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + +V++E++ Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVAMEKL 810 >gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] Length = 856 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 352/899 (39%), Positives = 523/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTECR+ Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG QEP +L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DNP+ L A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ SG+R+ IV+TE+PYQVN M+ IAE V +I IA + DE SDR G R+ Sbjct: 252 GVTSIEE-SGNRQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L+ +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR L K L Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KTL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + +DD VQ AIL ++L RL L R I +EL + I + DI Sbjct: 421 L-AVDD---------------VQADAILAMQLRRLAALERQKIIDELAEIEEIIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + ++ RRT+IV D+ DED I RE++VVT++ GY KR Sbjct: 465 LAREERQRQIVHDELAEIVEKYGDERRTQIVAASGDVTDEDLIARENVVVTITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP Sbjct: 525 TKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V ATK G V++++L+D+ Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ++SM++V D Y Sbjct: 702 RGDDQLLSMSVV--HDGGY----------------------------------------- 718 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + G+GKRT+ ++ R G G+ + + G L+ V++ Sbjct: 719 ----------LLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTP--KRGKLIGAIAVDE 766 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D+I ++ G +IR VN+IR +SRAT GV + + + D +++++R E ++A++ Sbjct: 767 EDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLSNDVELLAIDRNVEDHGEEDAQA 825 >gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial [Vitis vinifera] Length = 911 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 348/880 (39%), Positives = 521/880 (59%), Gaps = 77/880 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ K Y KCA Sbjct: 66 IVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCA 125 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR LI+G GNFGSVD DPPAA RYTECRL Sbjct: 126 RVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRL 185 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL DL +DTVDF PN+D S +EP +L AR P +L+NG GIAVGMATNIP HN Sbjct: 186 EALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHN 245 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 +GE+VD +I NP+ L L+E + GPDFPTG +I+G GI AY TGRG I++RG + Sbjct: 246 IGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIVRGKT 305 Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E + R +++ EIPYQ NK++++EKIAELV K + I+D+RDESDR G R+VI Sbjct: 306 EVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVI 365 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRG+ ++LN+LYR T+LQS FS NM+ + +P+ L +L+AF+ FR VV RR Sbjct: 366 ELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSVVERR 425 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++ L++A++R H++ G+ + + NLD V+R+I+ +P+ A Sbjct: 426 ARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA------------------- 466 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + G LSE Q AIL++ L R+T L R+ E SL +I + ++LS Sbjct: 467 -------STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQELLS 519 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SR ++L +I+QE + +K+ TPRR+ + + +ED D I E+M++ VS GYVKR+ Sbjct: 520 SRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGYVKRM 579 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + + Q RG G+S +R D ++D + H VL+FS G V+ + +++P + Sbjct: 580 KPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIPECTR 639 Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A G L+ IL L+ GERIT+I+P F ED+ +++ T +G +++ L+ F I Sbjct: 640 TAAGTPLVQILCLSDGERITSIIPVSEFAEDQ------FLLMLTMNGYIKKVSLNFFSSI 693 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA++L DE+ V CT ++ + + ++ G + IR GRN+ G + Sbjct: 694 RSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRNTRGSIAMR 752 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD++ SM I+ A ++ D +E + + Sbjct: 753 LKQGDKMASMDIIPAA------------------------------IRKD--LEKALEDR 780 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPV 847 + + L ++L VSE G GKR FR+S + G+ S + + A+ V F + Sbjct: 781 QSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSAEDHLAAVFVVGFSL 840 Query: 848 ND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 + ++Q++LVS GT+ R+ V +I I SR +GV++ Sbjct: 841 TEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILM 880 Score = 38.1 bits (87), Expect = 7.4, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ +L VSEKG+ KR F + NR G V K+ A+ + +D ++ Sbjct: 564 EEMLLAVSEKGYVKRMKPNTFNLQNR---GTIGKSVGKLRVNDAMSDFIVCHAHDYVLYF 620 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 SD+G + +I +R G V I + ER+ S+ + E Sbjct: 621 SDRGIVHSARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSE 666 >gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515] gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9515] Length = 863 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 346/883 (39%), Positives = 530/883 (60%), Gaps = 73/883 (8%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 SS E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ Sbjct: 10 SSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLT 69 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPA Sbjct: 70 SGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPA 129 Query: 127 AERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 A RYTE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVG Sbjct: 130 AMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVG 189 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATNIP HNLGE+++G ++I NP ++ L E+I+GPDFPTG ILGR GIK + +GR Sbjct: 190 MATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDGIKETFKSGR 249 Query: 246 GSIVIRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GSI +RGV+ IE K+ G +++ +++TE+P+Q NKAA++E+IA+LV +K++ I+D+RD Sbjct: 250 GSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEGISDIRD 309 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F Sbjct: 310 ESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTLSLRKMLDVF 369 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR + RRT +LL KA +R H++ GL +A+ +D ++ +IR + + +AR +L + Sbjct: 370 LDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTSAREQLQK-- 427 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 LS +Q AIL+++L RLT L D I++E + L Sbjct: 428 ------------------------DHELSVIQADAILQMQLRRLTALEADKIKSEHDELT 463 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I + +IL + R+ II +EL + + +PR+T I+ ++D D I E VV Sbjct: 464 RKITDYKNILQDKDRINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVL 523 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GY+KR+P+S + + RG +G++G +++D V + H ++L FS G Y Sbjct: 524 LTSAGYLKRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYAL 583 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +R+P+ S A+G + +L + + E+IT+I+ ES N+ Y++ TK G ++R Sbjct: 584 PAYRVPMSSRTAKGTPSVQLLPIPREEQITSIVSV---ESFDNDRYLLMLTKAGFIKRTP 640 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGR 719 LS F +I +G IA+ L+ D + V + + +L+ + G + F + + +R GR Sbjct: 641 LSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDNNELRPL-GR 699 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL--KN 777 + GV+ ++L GD+++SM + L S +++ SL +N Sbjct: 700 TARGVKSMNLKDGDKLVSMDV-----------------------LTSDLVDQLASLENEN 736 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D +E N S K ++L S G GKR FR+ R+G G+RA ++ Sbjct: 737 DEDIESNSS---------KGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDD 787 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 +LV + + + +++I V+++G ++R ++I SRA GV Sbjct: 788 --SLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGV 828 >gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri] Length = 821 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 351/885 (39%), Positives = 541/885 (61%), Gaps = 87/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M + + + K++ K A Sbjct: 15 IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R LI+G GNFGS+DGDPPAA RYTE ++ Sbjct: 75 RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A ++ D+ K+T F NYDGS +EP L +PN+LVNG GIAVGMATNIP HNL Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DG +AV NP+I LM+II+GPDFPTGA+I G+ AY TG G+I IR Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAGNGLIKAYETGNGAITIRSKID 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + R +I+V+EIPYQ+NKA +LE+IAELVR+K I I DLRDES+ +G RVV+ELK Sbjct: 255 IEENNNKR-RIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVLELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +VILN+LY+ T LQ+ FS+N++AL +P L ILK F+ + +++++R+++ Sbjct: 314 RDAQENVILNKLYKLTPLQTNFSLNILALYKNQPRVMGLKQILKYFIEHQIDIIIKRSQF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L K R+R +L GL IA+ N+DEV+ II+ S + A L+ + +L+ Sbjct: 374 ELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINK----------FNLVG 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Q RAILE+RL RLTGL + I NE+ + + I E +I+++ Sbjct: 424 E----------------QARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSE 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + I+ EL +K + RR++I+ E L +++ E+ I RED ++ ++ GYVKRV Sbjct: 468 KQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQDGYVKRVSDD 527 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGGKG G+ ED + + ++ S+L FS+ G VYK + + + S AR Sbjct: 528 TFKLQNRGGKGIIGLA-NIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHAR 586 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +IN++++++ E I TI+ E S+ +NL+ F TK G +++ K+S+F QI ++GK+ Sbjct: 587 GLPIINLIAIDKTESIQTIIAVDESISTEDNLF--FVTKKGLIKKTKISEFNQIRQTGKV 644 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A++L DE++SV +D+++ +G+ +RF IR R SVGV+GI+ Sbjct: 645 AIELKDNDELVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMT-RQSVGVKGIA------ 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 DA +G+T ++S ++ V Sbjct: 698 ---------NDA-------------------TGETIGVSSGRSAKYV------------- 716 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L+V+E G+ K+T D+R++ R+ KG+++ +++ ++ G L V V+ ++ I+ Sbjct: 717 ------LSVTENGYAKKTIIKDYRLTGRNTKGVKSINLT--DKTGYLKFVQTVDGDEDIL 768 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + + KG +IRV + +I + R T GV I +D+++ +E +++ Sbjct: 769 VGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEVIEILKK 813 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 7/126 (5%) Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++E +EL +E ++ +++ G+ KR S F++ NR GKGI + N +L + Sbjct: 497 LTEIDPEELIRREDTLIMLTQDGYVKRVSDDTFKLQNRGGKGI----IGLANIEDSLKKI 552 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 N D +++ S+ G + ++ I SR +G+ I + ++ S++ I VD Sbjct: 553 ISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIAIDKTESIQTIIA---VD 609 Query: 905 EAESTE 910 E+ STE Sbjct: 610 ESISTE 615 >gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301] gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301] Length = 883 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 357/906 (39%), Positives = 517/906 (57%), Gaps = 98/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 40 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + +VQ AIL ++L LT + RD I E L +I + +DI Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFAPDETIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V D+D D Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G GI+A V + GALV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEK--- 853 Query: 904 DEAEST 909 DE E + Sbjct: 854 DEPEDS 859 >gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104] gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104] Length = 839 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 356/902 (39%), Positives = 519/902 (57%), Gaps = 94/902 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++ KL+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D Y+ ++ R Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 EG ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814 Query: 893 SV 894 ++ Sbjct: 815 AI 816 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++ + EI D+ + +G++S+E +L +E ++T++E G+ KRT + Sbjct: 476 QRGIVRDELAEIVEKHGDARRTRIVAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 532 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + + F + +D I+ + +G + R E+ AS Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHF---FVCSTHDWILFFTTQGRVYRAKAYELPEAS 589 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901 R +G + + +ER+ V +IR E Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQIRSYE 619 >gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213] gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213] Length = 896 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 354/902 (39%), Positives = 521/902 (57%), Gaps = 95/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 41 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 100 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR+ Sbjct: 101 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPGDDPAAAMRYTECRM 160 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 161 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 220 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +++PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 221 REVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 281 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 339 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 399 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM+ L Sbjct: 400 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME----------L 449 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L LT + RD I E L +I + +DI Sbjct: 450 LD----------------IDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 493 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 494 LAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 553 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 554 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I ++ P E + Y+V AT+ G V++ L+++ + Sbjct: 614 RDSKGQHVANLLQFAPDESIQAVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 670 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F + ++ GR + G Sbjct: 671 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPMGRQTAG 730 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ +GD++++M +V D+D D Sbjct: 731 VQGMKFREGDELLAMDVVW-GDSDKD---------------------------------- 755 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G GI+A V + G+LV Sbjct: 756 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGSLVG 797 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E + Sbjct: 798 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDEILSIARNEEKDDP 857 Query: 904 DE 905 +E Sbjct: 858 EE 859 >gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 844 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 356/890 (40%), Positives = 512/890 (57%), Gaps = 87/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y K A Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ A+Y + RMAQ++S+R LL++G GNFGS+DGD AA RYTE RL Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP HNL Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV A N DI + +ME ++GPDFPTGA I G +GI N + TGRGS+ IR Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIRSKYE 264 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R IVVTEIPY VNK ++EKI ELV K+I I+DLRDES R G R+VIE+K Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LN+L++ T+LQ+ FSVN +AL P + ++K + + EV+VRRTK+ Sbjct: 325 RDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVRRTKF 384 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R Sbjct: 385 DLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR--------------- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+QT+AILE+RL LTGL D ++ E L + IK+ DIL + Sbjct: 430 -----------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYD 478 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II + L + ++ RRT I+ G+ ++DED I ED+VVT+S GY KR+P+ Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Q++ Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN L + + E I TI+P D +L+ F T G ++R LSDF I +GKI Sbjct: 599 GIPAINFLPIEKSESILTILPI--DNYEQGSLF--FTTSKGIIKRANLSDFESIRANGKI 654 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++ SV +++ + G +RF + R GR + GV+GI+L + Sbjct: 655 AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLEDDEY 713 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + H + Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++L V KG GK T D+R++ R KG+ V+ + G LV++ VN +++ + Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGNLVSIKVVNRDEEAL 778 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++ G +IR+ + +I + R T GV + S E V S+ ++ EI D Sbjct: 779 IITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDD 828 >gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] Length = 903 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 363/903 (40%), Positives = 523/903 (57%), Gaps = 93/903 (10%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 I D ++ + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M G Sbjct: 35 IERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGY 94 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 ++ Y KCAR+ G+VMG YHPHG++AIYDAL R+ QDWS+R L++GQGNFGS D Sbjct: 95 RPDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGA 154 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTECR+ A ++ D+ +DTVDF PNYDG +P VL +R+PN+LVNG GIAVG Sbjct: 155 AAPRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVG 214 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAY 241 MAT IP HNL EV +G + +P+I L+AL+ II+GPDFPTG++I+G GI++AY Sbjct: 215 MATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHRGIEDAY 274 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 TGRGSI++R + ++E+ +R+ +VVT++PYQVN + KIA+LV++ +I IAD+ D Sbjct: 275 RTGRGSIIMRAIVNVEEIK-NRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIAD 333 Query: 302 E-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 E S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P L G ++ Sbjct: 334 ETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDDVPRTLPLDGFIRH 393 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 +V + EV+ RRT + L KA H+L G A+ LDEV+ +IR S E AR L+Q Sbjct: 394 WVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ- 452 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 L+D + E Q +AIL ++L RL L R+ I+ + + L Sbjct: 453 ---------LLD----------------IDETQAQAILNMQLRRLAALERERIQQQHDEL 487 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 I E IL+S R I+ +EL + D+ RRT IV DM ED I ED+VV Sbjct: 488 QELIDEYQAILASEVRQREIVSEELQGIVDKYGDERRTEIVPFDGDMSMEDLIPEEDVVV 547 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 T++ GY KR +YR+QRRGGKG G +R ED V F +TH +LFF++LG VY+ Sbjct: 548 TITRGGYAKRTRTDLYRSQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYR 607 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + LP GS ++G+ + N+L+ GE+I ++ + E++ Y+V AT+ G V++ Sbjct: 608 AKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVLAIHDYEAAD---YLVLATRAGLVKKT 664 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAG 718 +L D+ G IA+ L DE++ +D+LL ++ G VRF SA+R G Sbjct: 665 RLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPM-G 723 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R++ GV G+ GD ++SM+ V A+ D D Sbjct: 724 RSTSGVTGMKFRPGDTLLSMSRV-PAETDVD----------------------------- 753 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + V E G KRT ++R+ R G GI+ V+K++E Sbjct: 754 ---------------------VFVVFENGLAKRTPVSEYRVQGRGGYGIQ---VAKLSEK 789 Query: 839 GA-LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 G LV V ND++++V +KG ++R V+E+R SR+T+GV + K + +V+V R Sbjct: 790 GGDLVGALTVTGNDEVMVVMEKGKIVRSRVDEVRHTSRSTQGVRFAAPDKGDAIVAVARN 849 Query: 898 RES 900 ES Sbjct: 850 AES 852 >gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291] Length = 839 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 356/902 (39%), Positives = 518/902 (57%), Gaps = 94/902 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + + V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L + ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + +DN + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++ KL+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D Y+ ++ R Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 EG ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+++ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLL 814 Query: 893 SV 894 ++ Sbjct: 815 AI 816 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++ + EI D+ + +G++S+E +L +E ++T++E G+ KRT + Sbjct: 476 QRGIVRDELAEIVEKHGDARRTRIVAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 532 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + + F + +D I+ + +G + R E+ AS Sbjct: 533 DLYRSQKRGGKGVQGAGLKQDDIVRHF---FVCSTHDWILFFTTQGRVYRAKAYELPEAS 589 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901 R +G + + +ER+ V +IR E Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQIRSYE 619 >gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] Length = 863 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 341/877 (38%), Positives = 535/877 (61%), Gaps = 66/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Sbjct: 14 EDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G ++I+NP I+ L E+I+GPDFPTG ILGR GI+ + TGRGSI Sbjct: 194 IPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDGIRETFKTGRGSIT 253 Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE K++G +++ +++TE+P+Q NKA ++E+IA+LV E+++ I+D+RDESDR Sbjct: 254 MRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR Sbjct: 314 DGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTLSLRRMLDVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT +LL KA +R H++ GL +A+ +DE++ +IR + + +AR +L Sbjct: 374 VETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAREKLQT------ 427 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LS Q AIL+++L RLT L D I+ E + L +I Sbjct: 428 --------------------DHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKIN 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + IL+S+ R+ II +EL + + +PR+T I++ ++D D I + VV ++ Sbjct: 468 QYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDLIANDRSVVLLTEA 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + + RG +G++G + +D V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G + +L + + E+IT+++ +S N+ Y++ TK G ++R LS F Sbjct: 588 VPMSSRTAKGTPSVQLLPIPREEKITSLVAV---DSFDNDCYLLMLTKSGFIKRTSLSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + + +L+ ++ G + F I+ +R GR + G Sbjct: 645 SKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDINELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ ++L KGD ++SM ++ +D +++ + ++ +EI + ++E Sbjct: 704 VKSMNLKKGDNLVSMDVLT---SDLVDKLAKIDDLN----------KEI-----EENIEV 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N S+ ++L S G GKR FR+ R+G G+RA +++ LV Sbjct: 746 NSSD---------GPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAIKFRIQDDV--LVC 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + + ++++ V++KG ++R ++I SRA GV Sbjct: 795 LKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGV 831 >gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] Length = 837 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 349/911 (38%), Positives = 535/911 (58%), Gaps = 96/911 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + V I++EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM MGV N+ Y Sbjct: 3 EGEKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A I G+V+GKYHPHG+ A+YD + RMAQ+WSLR L++GQGNFGS+ GDPPAA RYT Sbjct: 63 KKSAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + YD S +EP VL R PN+LVNG GIAVGMATN+ Sbjct: 123 EARMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMA 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EV+DG +A I+N DI++D L++ I+ PDFPTG +I G G+K A+ TGRG +++R Sbjct: 183 PHNLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + ++ G +E IVVTE+PYQV+ + +L+K ++LV+E ++ I D+RDES R R+V Sbjct: 243 AKAEFQEVRG-KECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LN L+++T LQ+ FS+N +AL +PE+ L ++ FV R EVV R Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKGRPEQLNLKDLIYHFVEHRHEVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVA---NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT Y L KA++R H+L G +A + + + IIRF P+ + Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPK----------------E 405 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 DLI D L+++Q AIL L L R+ + E EI++ Sbjct: 406 DLIAEFD-------------LTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K++ RR+ I + ED I + MV+T+SH GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR LS Y+ Q RGG G+ RD+DF+ LF+ S H +LFF+ G + +V+ +P Sbjct: 513 KRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 GS A+G+A+ N++++ Q ++I + +DE NN Y++ ATK G V++ L ++ Sbjct: 573 GSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G A+ + DE++ + + + ++L K G+ +RF +R GRNS GVRG Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRA-VGRNSQGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L DTE ND V G I+ Sbjct: 692 IDL--------------------------------------DTE------NDEVV-GMIA 706 Query: 787 EERCQELKLKEQFILTVSEKGFGKR-------TSSYDFRISNRSGKGIRATDVSKINEIG 839 E +E+ +L VSE G+GKR T +RI+NR GKG++ +++ + G Sbjct: 707 IENP-----REETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITE--KTG 759 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 LVA+ V + + +++++ G IR+ ++ +RI+ RAT+GV + + + + +V ++ + Sbjct: 760 QLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVMK 819 Query: 900 SEIVDEAESTE 910 E DE ++ E Sbjct: 820 -EDDDETDAAE 829 >gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] Length = 837 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 347/888 (39%), Positives = 521/888 (58%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T + + +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 15 VTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDNGYRPERSYVKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG YHPHG++AIYD L R+AQ WS+R L++GQGNFGS D AA RYTECR+ Sbjct: 75 KPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGSRGNDGAAAMRYTECRM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F+PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 135 TPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DNPD + L+A ME ++GPDFPT +I+G GI++ Y TGRGSI +R Sbjct: 195 NELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDKGIQDTYRTGRGSIRMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R+ I++TE+PYQVN ++ IAE +R+ +I I+ + DE SDR G R+ Sbjct: 255 GVTSIEE-EGNRQVIIITELPYQVNPDNLVASIAEQIRDGKIAGISKIDDESSDRVGMRI 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + +V+V Sbjct: 314 VITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDGVPRTLRLDQMLRHYVDHQIDVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL A+ LDEV+ +IR SP + AR L Sbjct: 374 RRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAR-------------TGL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+D + EVQ IL ++L RL + R I +EL L I + I Sbjct: 421 IDLLD-------------VDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S R I++ EL + D+ RRT+I+ D+ +ED I RE++VVT++ GY KR Sbjct: 468 LESPQRQRDIVRTELAEIVDKYGDERRTQIIAASGDVSEEDLIARENVVVTITSTGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR+QRRGGKG G ++ +D V F+ STH ++LFF++ G VY+ + + LP + Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAT 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE+I ++ +S + Y+V AT HG V++++L+D+ Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATAHGRVKKSRLTDYDTARS 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L+ D ++ + CT E+D+LL ++ GQ +RF +R GR + GV+G+ Sbjct: 645 GGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDETLRPM-GRATAGVKGMR 703 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + DQ++++ +V DSS+ Sbjct: 704 FREEDQLLALTVV----------------------------------AEDSSL------- 722 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 F+ T G+GKRT ++ R G G+ A K + G L+ VN Sbjct: 723 ----------FVATSG--GYGKRTPMEEYPTKGRGGLGVVAFKYDK--KRGKLIGALTVN 768 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 D+D+I+ ++ G +IR V++IR + RAT GV + AK +V+V+R Sbjct: 769 DDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAVDR 816 >gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 867 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 347/905 (38%), Positives = 534/905 (59%), Gaps = 67/905 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + Y KCA Sbjct: 19 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 QSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNGSSGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG A+I NP + L E+I+GPDFPTG ILGR GIK + +G+GSI +RGV+ Sbjct: 199 LGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDGIKETFKSGKGSITMRGVA 258 Query: 255 HIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 IE K+ G +++ +++TE+P+Q NKAA++E+IA+LV EKR+ I+D+RDESDR G R+ Sbjct: 259 DIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRLDGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A V+LN L++ T LQ+ FS N++AL +P +L +L F+ FR E + Sbjct: 319 VIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTLSLRKMLDVFLEFRIETIK 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT +LL KA +R H++ GL +A+ +D ++ +IR + + +AR +L Sbjct: 379 RRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNSAREQLQN----------- 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS +Q AIL+++L RLT L D I++E + L +I + +I Sbjct: 428 ---------------DHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + R+ II +EL + + +PR+T I+ ++D D I E VV ++ GY+KR Sbjct: 473 LNDKERINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDLIANERSVVLLTTAGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + + RG +G++G + +D V + H ++L FS G Y +R+P+ S Sbjct: 533 MPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G + +L + + E+IT+++ +S N Y++ TK G ++R LS F ++ Sbjct: 593 RTAKGTPSVQLLPIPREEQITSLVSV---DSFDNECYLLMLTKAGFIKRTPLSAFSKVRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D + V T+ + +L+ + G + F + + GR + GV+ ++L Sbjct: 650 NGLIAINLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDTNELRPLGRTARGVKSMNL 709 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+++SM ++ C + A + E L++ SS Sbjct: 710 KEGDKLVSMDVL----------SCDLVDQLANLEEEDIENENEEDLESKSS--------- 750 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +IL S G GKR FR+ R+G G+RA ++ +LV + + + Sbjct: 751 ------NGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAIKFRIKDD--SLVGLKVLGE 802 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-----ERIRESEIVD 904 ++++LV+++G ++R ++I SRA GV + + + V E+I E +++ Sbjct: 803 GEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDHLSEVVLVPHEQIEEDQLIS 862 Query: 905 EAEST 909 E T Sbjct: 863 NEEET 867 >gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 844 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 355/890 (39%), Positives = 512/890 (57%), Gaps = 87/890 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF + G+ +K Y K A Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG+ A+Y + RMAQ++S+R LL++G GNFGS+DGD AA RYTE RL Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ LL + K+TVDF PNYD S QEP VL + +PN+L NG GIAVGMATNIP HNL Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV A N DI + +ME ++GPDFPTGA I G +GI N + TGRGS+ IR Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIRSKYE 264 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R IVVTEIPY VNK ++EKI ELV K+I I+DLRDES R G R+VIE+K Sbjct: 265 IEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEVK 324 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LN+L++ T+LQ+ FSVN +AL P + ++K + + EV+VRRTK+ Sbjct: 325 RDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVRRTKF 384 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R Sbjct: 385 DLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR--------------- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+E+QT+AILE+RL LTGL D ++ E L + I++ DIL + Sbjct: 430 -----------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYD 478 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II + L + ++ RRT I+ G+ ++DED I ED+VVT+S GY KR+P+ Sbjct: 479 RQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKRLPID 538 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ QRRGG G G+ ++D V + + +THT +LFFS LG VY+ + +P+GS Q++ Sbjct: 539 TYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSK 598 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN L + + E I TI+P D +L+ F T G ++R LSDF I +GKI Sbjct: 599 GIPAINFLPIEKSESILTILPI--DNYEQGSLF--FTTSKGIIKRANLSDFESIRANGKI 654 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++ SV +++ + G +RF + R GR + GV+GI+L + Sbjct: 655 AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLEDDEY 713 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ + H + Sbjct: 714 VVGTGLSSHGE------------------------------------------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++L V KG GK T D+R++ R KG+ V+ + G LV++ VN +++ + Sbjct: 725 ----YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DRTGNLVSIKVVNRDEEAL 778 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 +++ G +IR+ + +I + R T GV + S E V S+ ++ EI D Sbjct: 779 IITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDD 828 >gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F] Length = 846 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 342/881 (38%), Positives = 523/881 (59%), Gaps = 88/881 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G G+ ++K Y K A Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD AA RYTE RL Sbjct: 78 QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L ++ KDTVDF NYD S QEPVVL + +PN+L NG GIAVGMATNIP HNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G ++ N + ++ L E I+GPDFPT A ILG TGI + TGRGS+ +R S Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + ++ IV+T+IPY VNKA ++ KIAELV+ ++I IADLRDES+R+G R+VIE K Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQLY+ T LQ+ FSV M+AL +P+ L L+ ++ + ++++R+T + Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ AH++ GL IA N+D+V+ II+ + + E A+ LM + Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTKYE------------- 424 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL L+GL R++++ EL L IK+ +IL ++ Sbjct: 425 -------------LSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II +L + + RRT+I GL +++E I E +V+T S GY+KR+P+S Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G G+ ++D V L + STH+ +LFF++ G VY+ + ++P+GS ++ Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN++S+ + E++ +++ + +++ Y F+TK G V+R K S+F +I +GKI Sbjct: 592 GIPAINLISIEKDEKLMSLLSI----NDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 A+KL D + V + +I + G VRF +R GR + GV G+ D Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI ++ SS EG++ Sbjct: 707 EVIGLS---------------------------------------SSHEGSL-------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V EKG GK T ++R++NR KG+ V+ + G ++ VN N+++ Sbjct: 720 ------LLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++S G ++RVP+ E+ R T GV + S + E + SV Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSV 812 Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T S KG+ KR +++ +R G G++ + + +++ +L+ +D ++ Sbjct: 513 ETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSD---LLFF 569 Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899 ++ G + R+ +++ + SR +KG+ + S KDE+++S+ I + Sbjct: 570 TNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSLLSIND 615 >gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] Length = 824 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 357/891 (40%), Positives = 515/891 (57%), Gaps = 88/891 (9%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MG 64 ++S+E S++I DEM+N ++ YA++VI+GRAIPD+RDGLKPVHRRIL+ M G Sbjct: 1 MTSEENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEG 60 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 +K Y K A+ MG YHPHG++AIYD L +MAQ +S R L++GQGNFGS+DGD Sbjct: 61 NTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDS 120 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL KAA LL+D+ K+TVDF PN+D S QEP VL +R PN+LVNG GIAV Sbjct: 121 AAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAV 180 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATN+ HNLGEV D A IDNP++ L+ +M+I+ PDFPTG I+G GI NAY TG Sbjct: 181 GMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGTDGIVNAYQTG 240 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +G +V+RG++ IE+ EQIV+TEIPYQVNKAAM+EKIA+LV+ K I I+D+RDESD Sbjct: 241 QGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESD 300 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 + G RV+IELK+ A+V+LN LY++T L+S F + +A+ KP+ +L +L+ F+A Sbjct: 301 KDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKKPKILSLAELLRHFIAH 360 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R +VV RR+ + L KA +R H+L GL A+ +D V+ IR SP A+ L+ + Sbjct: 361 RVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSK---- 416 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 + SE Q AIL+++L RL L + I +E SL + I Sbjct: 417 ----------------------LGFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVI 454 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVS 543 + ILSS +L ++K E ++ RRT+I D D I E +V ++ Sbjct: 455 DKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMDLIPDEQTLVMLT 514 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 Y+KRVPL +YR Q+RGG+G G+ +DED V +F+ +TH +L F++ G VY +V Sbjct: 515 TQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRV 574 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 + +P GS ++GKA++N+L+L E ++ ++P + ++ N LY ATK G V + Sbjct: 575 YEIPEGSRTSKGKAIVNLLNLTD-EEVSAVIPMRDFDAEKNLLY---ATKKGRVGKFSQD 630 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F + G I + L DE++ V D++LTT GQ +RF +R GR + G Sbjct: 631 LFSRPRTGGIIGITLLDGDELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRA-TGRGTQG 689 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V GI L + DY Sbjct: 690 VIGIR-------------LKFEGDY----------------------------------- 701 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 C ++ Q++L +++KGFGKRT +FR R +G+++ + E G +V+ Sbjct: 702 -----VCALTLVETQYLLMITDKGFGKRTEFEEFRGHGRGTQGVKS--IVANFERGKVVS 754 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 V+D+DQ+I+ + G ++R ++I I R TKGV + ++V SV Sbjct: 755 SLAVSDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRVDSGDKVTSV 805 >gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora] gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora] Length = 882 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 356/877 (40%), Positives = 527/877 (60%), Gaps = 61/877 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + DEM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 9 ESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLSSDRP 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 69 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDSDPPAAMRY 128 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ A LL+D+ +TVDF N+DGS QEP V+ AR P++L+NG GIAVGMATN Sbjct: 129 TESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D +A+I +P+I AL+ I+ GPDFPTG ILGR GI+ AY TGRGS+ Sbjct: 189 IPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIREAYTTGRGSVT 248 Query: 250 IRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE + DR+ +++TE+PYQ NKA+++E+IAELV +K++ I+D+RDESDR Sbjct: 249 MRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDGISDIRDESDR 308 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V EL+R A V+LN L++ T LQS FS +++AL +P TL +L F+ FR Sbjct: 309 DGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLRQMLHVFLDFR 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+YLL KA +R H L+GL +A+ LD ++ +IR + + TAR +L Sbjct: 369 IETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARYQL-------- 420 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 Y G LSE+Q AIL+++L RLT L D IR E L ++ Sbjct: 421 ------------QYFHG------LSEIQADAILQMQLRRLTALEADKIRFEHEDLVQKVN 462 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R R+L +IK+EL + + ++PRRT+I++ +ED D I E VV ++ Sbjct: 463 NYRDILAHRDRVLELIKEELKLLHNRYNSPRRTKILDLEGSLEDIDLIANERSVVLLTEN 522 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + ++ V + H ++L FS G Y +R Sbjct: 523 GYLKRMPVSEFEATNRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYR 582 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P+ S A+G ++ IL + + E IT+++ E N + ++ T G ++R +LS F Sbjct: 583 VPVSSRSAKGTPVVQILPIPREEEITSLLSVSAFE---NEVQLLMLTNSGFIKRTRLSAF 639 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723 I +G IA+ L+ D + V + +L+ + G + F I +R GRN+ G Sbjct: 640 SNIRSNGLIAINLELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEELRPL-GRNARG 698 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VR ++L D ++SM ++ A+ +++ + R EE+ +S Sbjct: 699 VRAMNLRDNDSLVSMDVL---PAELADQVANSVDSGVEER------EELGGGTGSASPAA 749 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L S G GKR FR+ R+G G+RA + ++ LV Sbjct: 750 G-------------PWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRFRRKGDV--LVG 794 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + ++++LVS+KG ++R+ + I SRA GV Sbjct: 795 LKVLGSREELLLVSEKGVIVRMQADLIPQQSRAATGV 831 Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDN 850 +L E+ ++ ++E G+ KR +F +NR +G T N+ V +F ND+ Sbjct: 508 DLIANERSVVLLTENGYLKRMPVSEFEATNRGTRGKAGTK----NQGDEGVKLFISCNDH 563 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 D ++L SD+G +P + ++SR+ KG V I ++E + S+ Sbjct: 564 DTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQILPIPREEEITSL 610 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 11/113 (9%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKG-RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +V + S LG KRVP++ +R QRR G G R+ R D + L ++ + +L S G Sbjct: 754 LVASASGLG--KRVPVNQFRLQRRAGMGLRAMRFRRKGDVLVGLKVLGSREELLLVSEKG 811 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-----EDESSWN 644 + + + +P Q+R + + L+ G+ + I+ P ED+ + N Sbjct: 812 VIVRMQADLIP---QQSRAATGVRLQKLDDGDHLAEIVLIPHVLEEEDDPNVN 861 >gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833] gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833] Length = 834 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 347/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G ++ Y K + Sbjct: 15 IEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMFEGGYRPDRGYFKSS 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG YHPHG+A+IYD + R+AQ WSLR L++GQGNFGS DP AA RYTE R+ Sbjct: 75 RIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTESRM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ KDTVDF+PNYDG +EPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 135 APIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E + +++P++ L+ L+E I+GPDFPTGA+I+GR GI+ AY TGRGSI++R Sbjct: 195 RETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIVGRRGIEEAYRTGRGSIIMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ + R+ +VVTE+PY VN + IAELVRE +I IAD+RDE S R G R+ Sbjct: 255 AVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGIADVRDESSSRTGQRL 314 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+LN LY++T LQ+ F NM+AL P L ++ ++ + +VVV Sbjct: 315 VIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDGVPRTLRLDQFVRHYIRHQIDVVV 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++LL KA +RAH+L GL A+ +DEV+ +IR SP+ A+ LM Sbjct: 375 RRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQTGLM------------ 422 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + EVQ +AIL+++L +L L R I++E + L +I + DI Sbjct: 423 --------------ALLEIDEVQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDI 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S R ++ +EL + + RRT+I DM +ED I ED+VVT++ GY KR Sbjct: 469 LGSEMRQRRLVSEELGEIIAKYGDERRTKITAYEGDMSEEDLIAEEDVVVTITRGGYAKR 528 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQRRGGKG G +R +D V F+ STH +L F++ G VY+ K + LP + Sbjct: 529 TSIDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEAA 588 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG+ L N+L++ E + I+ DE+ Y+V AT+ G V++ +L+++ Sbjct: 589 RDARGQHLANLLAMQPDEHVMEILSLRNYDEAP----YLVLATRSGMVKKTRLAEYDSPR 644 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 G IA+ L DE+++ ++E+D+LL +K Q +RF + +R GR + GV G+ Sbjct: 645 SGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVLRPM-GRATAGVIGM 703 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 A+GD++++M ++ D + Sbjct: 704 RFAEGDELLAMEVIRDGDEE---------------------------------------- 723 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L +E G+ KRT + + + R GKG+ + + G L+ V Sbjct: 724 ------------VLVATEGGYAKRTPADQYPVQGRGGKGVLTAKI--VQSRGKLIGAIMV 769 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 D++ ++ G +IR EI+ + R T GV + ++ + +V++ R ES Sbjct: 770 RPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGDSLVALARNAES 822 >gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 875 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 354/886 (39%), Positives = 533/886 (60%), Gaps = 70/886 (7%) Query: 2 TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 TE +E E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M Sbjct: 8 TEPTGGVPDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMY 67 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 ++G+ ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGS+D Sbjct: 68 ELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSID 127 Query: 122 GDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG Sbjct: 128 NDPPAAMRYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLLNGSS 187 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNLGE++DG +A+I NPD++ +M+II GPDFPTG ILGR+GI+ Sbjct: 188 GIAVGMATNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSGIRET 247 Query: 241 YATGRGSIVIRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 Y +GRGS+ +RGV+ IE DR+ I++T++PYQ NKAA++E+IA +V +K++ I Sbjct: 248 YLSGRGSVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKKLEGI 307 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 +D+RDESDR G R+V+EL+R + V+LN L++ T LQS FS NM+AL +P +L+ Sbjct: 308 SDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITLSLLR 367 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +L F+ FR + +RTKYLL KA +R H+L+GL +A+ LDE++ +IR + + A+++ Sbjct: 368 MLNVFLDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSVAKKQ 427 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 L + L++VQ AIL+++L RLT L D IR E Sbjct: 428 LQE--------------------------IHGLTDVQADAILQMQLRRLTALESDKIRLE 461 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L ++I + DILS++SR+ IIK EL+S+K++ RRT I++ +ED D I E Sbjct: 462 HEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQVRRTEILDLGSGLEDIDLIANE 521 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 VV ++ GY+KR+P++ + A RG +G+SG + E+ V + H ++L FS G Sbjct: 522 RSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSVRG 581 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 Y +R+P S A+G ++ +L + + E IT+++ S ++ Y++ T G Sbjct: 582 VSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLISV---SSFDDDNYLLMLTIGGF 638 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIR 714 ++R +S F +I +G I++ L+ D + V + + +L+ +K G + F + + +R Sbjct: 639 IKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVLIGSKAGMTIHFRLNDNELR 698 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GVR ++L GD ++SM ++ AD I S Sbjct: 699 PL-GRTARGVRSMNLRDGDSLVSMDVLSKELAD-----------------------RIAS 734 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 +D ++ N E +IL S G GKR FR+ RSG G+RA Sbjct: 735 TNDDEAINSNGQYE--------GPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFR- 785 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 ++ LV + ++ ++++LVS+KG ++R ++I SRA GV Sbjct: 786 -SDTDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGV 830 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ ++E G+ KR +F ++R +G T E+ ++ ND+D Sbjct: 516 DLIANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISC---NDHD 572 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 ++L S +G VP + SRA KG V + ++E + S+ Sbjct: 573 NLLLFSVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSL 618 >gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605] gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605] Length = 865 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 359/902 (39%), Positives = 525/902 (58%), Gaps = 73/902 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 RALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG A+I NP+I L+++I GPDFPTG ILGR GI+ Y GRGS+ +RGV+ Sbjct: 199 LNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREGIRETYLGGRGSVTMRGVA 258 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +IE DR+ +++TE+PYQ NKAA++E+IAELV +K++ I+D+RDESDR G R+ Sbjct: 259 NIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN L++ T LQS FS M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILLTLRKMLEVFLDFRVETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR++L R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQDRHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS++Q AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSDIQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+ GII+ EL +++ TPRRT I++ + D D I E VV ++ GY+KR Sbjct: 473 LGRRERVFGIIQSELAQLQERYPTPRRTEILDLGGGLSDIDLIANERSVVLLTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + ED V + H +++ FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLFSDRGVSYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E ITT++P E + +V T+ G ++R +LS F I Sbjct: 593 RAAKGTPVVQLLPIPREEAITTLIPVSEFSDDTD---LVMLTRGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ +K G + F +S +R GR + GVR ++ Sbjct: 650 NGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSDEELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D ++SM ++ AD + S + Sbjct: 709 LRDADALVSMDVLPVELAD----------------------------------QVAASAD 734 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + + ++L S G GKR FR+ R+G G+RA + LV + + Sbjct: 735 DEDDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLSVLG 792 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++++LVS+KG ++R + I SRA GV + K +R++ V + D A+ Sbjct: 793 AGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDSADD 852 Query: 909 TE 910 TE Sbjct: 853 TE 854 >gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bifidobacterium longum DJO10A] gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A] gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68] gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F] gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM 1217] gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A] gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68] gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM 1217] gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F] Length = 883 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 353/898 (39%), Positives = 514/898 (57%), Gaps = 95/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 40 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + +VQ AIL ++L LT + RD I E L +I + +DI Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V D+D D Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G GI+A V + GALV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E + Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 17/233 (7%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 LD DE++++ +++ D T +G + A + A + +R ++ D++++ Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477 Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793 L ADY I + QR++I + +EI + D + + E ++L Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +E ++TV+ GF KRT + ++R +R GKGI+ T K+ E + F + ++ + Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + ++KG + R+ E+ SR +KG + A DE + +V I E+ Sbjct: 592 LFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644 >gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211] gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9211] Length = 881 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 349/878 (39%), Positives = 534/878 (60%), Gaps = 63/878 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E E I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 EFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ L++G GNFGS+D DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNFGSIDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G +A+I NP++ + L +II+GPDFPTG ILGR GI+ Y TGRGS+ Sbjct: 194 IPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNGIQETYLTGRGSVT 253 Query: 250 IRGVSHIE--KTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE + +G DR+ +++T++PYQ NKAA++E+IA++V +K++ I+D+RDESDR Sbjct: 254 MRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R + V+LN L++ T LQS FS NM+AL +P +L+ +L+ F+ FR Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTLSLLRMLQVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT YLL KA +R H+L+GL +A+ LD ++ +IR + + A+ +L + Sbjct: 374 VETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSVAKAKLQE------ 427 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+EVQ AIL+++L RLT L D IR E L I Sbjct: 428 --------------------LHRLTEVQADAILQMQLRRLTALEADKIRLEHEDLLKRIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+++ R+ +IK+EL+ +K++ + PRRT I++ ++D D I E VV ++ Sbjct: 468 DFQDILANKPRVFDLIKKELIQLKEKYEAPRRTEILDLGGGIDDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + A RG +G+SG + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLFSDRGVAYSLPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +PI S A+G ++ +L + + E IT+++ S ++ +++ TK G ++R +S F Sbjct: 588 VPISSRSAKGTPVVQLLPIPREEAITSLLSV---SSFDDDNHLLMLTKGGYIKRTLVSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 +I +G IA+ L+ D + V + +L+ ++ G + F ++ +R GR + G Sbjct: 645 SKIRANGLIAISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLNDDELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VR ++L KGD ++ M ++ AD I ND S Sbjct: 704 VRSMNLRKGDSLVGMDVLPRELAD-----------------------RIAGTNNDDSDSD 740 Query: 784 NISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + S+ E+ + E ++L S G GKR FR+ R+G G+RA N+ +LV Sbjct: 741 SDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFR--NDGDSLV 798 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + ++++ V++KG ++R ++I SRA GV Sbjct: 799 GLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGV 836 >gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] Length = 849 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 334/721 (46%), Positives = 477/721 (66%), Gaps = 29/721 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G +K Sbjct: 3 EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD AA R Sbjct: 63 PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A ++ DL KDTV+F PNYDG +EP VL AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTHNLGEV+ +++NP+ LME + GPDFPTG +++G++GI+ AY TGRG + Sbjct: 183 IPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T +EQI+VTE+PY VNKA ++E+I+EL R+KRI I +RDESDR G R Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+ +L IL A+++ + EV+ Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLSHQREVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S E A+ Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTR------------- 409 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LID S LS+ Q +AIL++RL RLTGL RD I +E L I + D Sbjct: 410 ---LIDGYS----------LSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+ II ELL ++ + RRT + G + ++EDED I ED++VT++ GY+ Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRVP + ++AQ RGG+G G+ + DEDFV + STH ++LFF++ G VY+ K + +P Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 QA+G ++N+L E+I T++ E+ + Y+ F T+ G V+R +++F I Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINV-RGEAGESKDYLFFVTRLGVVKRTAVNEFSNI 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G A+ L DE+LSV+ IL+ TK G VRF +R+ GR++ GVRGI Sbjct: 636 RTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIM-GRSAAGVRGIR 694 Query: 729 L 729 L Sbjct: 695 L 695 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 58/246 (23%), Positives = 111/246 (45%), Gaps = 25/246 (10%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SVETCTQENDILLTTKLGQ 704 +V T++G ++R ++F NR G+ ++ DE V T T + + T K G+ Sbjct: 507 IVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNK-GK 565 Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAIVLHADA-DYDERICYMKHMSAQ 761 R + + GR + G+ ++L K GD+ I I + +A + + + ++ + Sbjct: 566 VYRMKGYEVPEY-GRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVV 624 Query: 762 RRLISGDTEEI-------TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 +R + I +L++D V ++ Q IL ++ G+ R + Sbjct: 625 KRTAVNEFSNIRTNGLRALTLRDDDEV-------LSVQITDGTQSILIATKDGYSVRFTE 677 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 D RI RS G+R ++ + +V VN ND ++++++KG + PV+E I Sbjct: 678 DDVRIMGRSAAGVRGI---RLRDGDVVVGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKG 734 Query: 875 RATKGV 880 R KG+ Sbjct: 735 RGGKGI 740 Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/102 (25%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 I+T++ G+ KR +F+ NR G+G++ +V+ + + +VA + +D ++ ++K Sbjct: 507 IVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVA---TSTHDTLLFFTNK 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIR 898 G + R+ E+ R KG+ + + K DE++ +V +R Sbjct: 564 GKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGDEKIQTVINVR 605 Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 94/213 (44%), Gaps = 15/213 (7%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +D + V+ LG VKR ++ + R G + +RD+D V + I S+L + Sbjct: 612 KDYLFFVTRLGVVKRTAVNEFSNIRT--NGLRALTLRDDDEVLSVQITDGTQSILIATKD 669 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G+ + + I A G +G R+ + N V+ T+ G Sbjct: 670 GYSVRFTEDDVRIMGRSAAGV---------RGIRLRDGDVVVGSDVVNPNDNVLVITEKG 720 Query: 656 NVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISA 712 ++ +S++ R GK + + ++ L+ T + DI++TT G +RF S+ Sbjct: 721 YGKQTPVSEYPIKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIMVTTTQGVMIRFTASS 780 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 + GR ++GVR I L G +V ++A V H + Sbjct: 781 VSQ-TGRATLGVRLIRLEDGAKVATLAKVDHEE 812 >gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286] gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286] Length = 819 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 358/882 (40%), Positives = 511/882 (57%), Gaps = 93/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV + K + Sbjct: 17 VDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIYD L RMAQ +S+R L++GQGNFGS+DGDP AA RYTE R+ Sbjct: 77 SIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + LL D+ KDTVDF+ NYD +EP VL + PN+LVNG GIAVGM+TNIP HNL Sbjct: 137 SPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGSSGIAVGMSTNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V +IDNPD +++ LM+ ++GPDFPTG I+G+ I +AYATGRG + +R Sbjct: 197 GEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIVGKDAIYSAYATGRGRLRVRADYE 256 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 ++ + +IVVTEIPYQ NKA M+E+IAE V E I IADLRDESDR G R+V+ELK Sbjct: 257 VDP---EENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADLRDESDRNGVRIVVELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ DV+ NQL + L+S F V +AL +P TL L+ +VA R+EVV RR+++ Sbjct: 314 RGANVDVVENQLLE-SHLESTFGVINLALVDDEPRVLTLKETLEHYVAHRKEVVRRRSQF 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L++A+DRAH+L G A+ N+D+VV +I+ S + + AR EL + Sbjct: 373 ELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRSQ--------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE Q I+ ++L LT + +I +E + I+ IL S Sbjct: 418 -----------FDFSEEQAAHIVRMQLGSLTSMETAEIESEYEDVQARIERLQTILDSED 466 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 LL +IK EL +K E D R+T I+E ++ ED I ED VV ++ Y+KR+P+ Sbjct: 467 ELLTVIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDA 526 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + AQ RGGKG G +D D V+ +F ++H +L F++ G VY+ K + +P S ARG Sbjct: 527 FDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 586 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 K+ +NI+ L E IT ++ F EDE + T++G V+R + +F I +G Sbjct: 587 KSAVNIIDLGDDEEITAVVSTDDFEEDEC------LTMVTRNGYVKRTCVDEFENILSTG 640 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA KL+ D ++ VE D+++ T+ G +RF S +R GR++ GVRGI L G Sbjct: 641 IIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREM-GRSARGVRGIDLQDG 699 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V +M A D+D+R Sbjct: 700 DKVAAMV----ATDDHDDRA---------------------------------------- 715 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +LTV+E G+GKRT ++ +R GKG+ D+ + G + V ++D Sbjct: 716 -------LLTVTENGYGKRTLLAEYSKQSRYGKGL--IDIKTDDRNGRVATAKAVREDDH 766 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++S+ G ++R+P ++ R TKGV I + + V SV Sbjct: 767 LVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVASV 808 >gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 873 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/922 (39%), Positives = 531/922 (57%), Gaps = 99/922 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 + E + + E E I V I EMQNSYL YA++VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 15 VAETTLVAAEAEAGRINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAM 74 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G N + KC R+ G+V+ K+HPHG+ A+YDALAR+ Q WSLR LI GQGNFGS Sbjct: 75 YDGGFRPNAGFYKCMRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSP 134 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 PAA RYTEC++ A ++ D+ ++TVDF NYDG QEPVVL AR+PN+LVNG Sbjct: 135 GNLGPAAPRYTECKMAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSE 194 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV +G +D+P+ L+AL+ I++GPDFPTGA ILG+T Sbjct: 195 GIAVGMATRIPPHNLREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATILGKTA 254 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ Y TGRGSI+ R V +IE+ +R+ +VVTE PYQVN + KIA+LV++ + I Sbjct: 255 IEQVYRTGRGSIIQRAVVNIEEIQ-NRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGI 313 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE SDR G R+VI LKR A A V+LN LY+ T LQS F NM+AL P +L Sbjct: 314 ADIRDETSDRSGQRLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVDGVPRTLSLD 373 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G + +V + EV++RRT++ L KA++R H+L G A+ LDEV+ +IR SP E AR Sbjct: 374 GFVHYWVKHQVEVIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARV 433 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM DL+ + EVQ AIL ++L RL L R I + Sbjct: 434 GLM----------DLLK----------------IDEVQADAILAMQLRRLAALERQKILD 467 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++++ DI+++ +R I+ +EL + + RRT IV +M DED I Sbjct: 468 EHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFGDERRTAIVPFNGEMTDEDLIPE 527 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y+AQ RGGKG G +R +D V F+ +TH +LFF++L Sbjct: 528 EEVVVTITRDGYAKRTRVDNYKAQHRGGKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNL 587 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + +P G +RG+ + N+L+ E I+ ++ + E + Y+V ATK G Sbjct: 588 GRVYRAKGYEIPEGGRDSRGQHVANLLAFQPDEAISQVLAIRDYEQAQ---YLVLATKSG 644 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ L+D+ G IA+ L DE++S E+D++L + GQ +RF Sbjct: 645 LVKKTALADYNSPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSLRFNC 704 Query: 711 S--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 + A+R GR++ GVRG+ + D +++M ++ H D+D Sbjct: 705 TDEAVRPM-GRSTSGVRGMRFREDDALLTMEVIEH-DSD--------------------- 741 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 +L V+E GF KR++ + + R G G++ Sbjct: 742 -------------------------------LLVVTEGGFAKRSAIDTYPVRGRGGLGVK 770 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++ + + G LV V++ D+++++ + G ++R+PV EI R T+GV + Sbjct: 771 VANL--VEDRGGLVGALKVHEEDEVLVIMESGNIVRIPVAEISRTGRTTQGVTFARPNEG 828 Query: 889 ERVVSVERIRESEIVDEAESTE 910 +R+++V R E+ + D+AE E Sbjct: 829 DRIIAVARNLETSL-DDAEEAE 849 >gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835] Length = 873 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 355/894 (39%), Positives = 524/894 (58%), Gaps = 73/894 (8%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V + E+ S+L Y+++VI+ RA+PD+RDGLKP RRIL+ M ++ + K Sbjct: 2 ENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKT 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC++I G+ MG YHPHG+AAIY L MAQDWS+R +L+ GQGNFG+ DGDPPAA RYT Sbjct: 62 RKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E +L L+ DL KDTVDF P YD EP V + +PN+LVNGG GIAVGMATN+P Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVDG AVIDNP + ++ L + I+GPDFPTG +LG +GI N + TGRGS+ IR Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G +E T ++ +++ E+PY VN+AA+ E+IAEL ++K + DI+ +RD SD + + Sbjct: 242 GKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-IE 300 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A V++NQLY+ TS+++ F+VNM+A++ +P+ ++ + ++ R EVVVR Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+YLL A A L +A+ ++D+ + IIR S N + AR L +++ + L Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LI S +I D ++ +E Q +IL+LRL +LT L D I E L + IK+ LDIL Sbjct: 421 ILI-RSQASIQGDRYVF-TERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDIL 478 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 ++ SR+LGI+K EL ++KD+ TPR TRI+ DM ED I + M+VT++H GY+KR Sbjct: 479 ANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITHSGYIKRT 538 Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 + YR Q RGGKG R + DF+ LF H ++FF++ G VY ++V+ Sbjct: 539 NSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYE 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLY------VVFATKHGNV 657 + + A+G+ + N+L L E I I+ DE + + VVFATK G V Sbjct: 599 IDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTV 658 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L+DF ++G IA+ L+ + +++ E + ++I+L T G +RFP +R Sbjct: 659 KKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDLRT-Q 717 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GRN++GVRGI GD V+++AIV Q+ L Sbjct: 718 GRNTIGVRGIRPRAGDYVVALAIV-----------------DPQKTL------------- 747 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 L SE G GKRTS ++R R G GI+ + + ++ Sbjct: 748 -----------------------LVASENGLGKRTSFDEYRTQGRGGTGIKTMNCT--DK 782 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 G +V+ V+D D+++L++ G +R+ V +R RAT+GV + + + E + Sbjct: 783 TGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEGESI 836 >gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1] Length = 869 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/914 (40%), Positives = 529/914 (57%), Gaps = 102/914 (11%) Query: 3 EHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58 E+ ++ E++ +G T V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ Sbjct: 4 ENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLY 63 Query: 59 GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118 M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFG Sbjct: 64 AMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFG 123 Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S DP AA RYTEC++ + ++ D+ +DTVDF+ NYDG QEP VL AR+PN+L+NG Sbjct: 124 SPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLLING 183 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGR 234 GIAVGMATNIP HNL EV +G + NP+ LDAL++ I+GPDFPTGA+++GR Sbjct: 184 SAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALVVGR 243 Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294 GI+ AY TGRGSI +R V +E+ G R+ +VVTE+PYQVN + +KIA+LV+E RI Sbjct: 244 KGIEEAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKEARIG 302 Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P + Sbjct: 303 GIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLS 362 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E A Sbjct: 363 LDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIA 422 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R LM DL + + E+Q AILE++L RL L R I Sbjct: 423 RGGLM----------DL----------------LTIDEIQANAILEMQLRRLAALERQKI 456 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533 E + L +I E IL+S R II +EL ++ ++ RRT+++ DM ED I Sbjct: 457 IQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYGDDRRTKLIPFDGDMSIEDLI 516 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 ED+VVT+S GYVKR YR+Q+RGGKG G ++ +D V F+ +TH +LFF+ Sbjct: 517 AEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFT 576 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + G VY+ K + LP +ARG+ + N+L+ E+I I+ + E++ Y+V ATK Sbjct: 577 NKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYLVLATK 633 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRF 708 G V++ L D+ G IA+ L D R DE++ E + ++D+LL +K Q +RF Sbjct: 634 SGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQSIRF 693 Query: 709 PIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 + ++R GR + GV+G+S +GD+++SM +V Sbjct: 694 TATDESLRPM-GRATSGVKGMSFREGDELLSMNVVRPG---------------------- 730 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 T T+ + N+ E R Q R G G Sbjct: 731 --TFVFTATDGGYAKRTNVDEYRVQ-----------------------------GRGGLG 759 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 I+A + + + G+LV V ++D+I+ ++ G +IR VNE+R R T GV + + Sbjct: 760 IKAAKI--VEDRGSLVGALVVEESDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLG 817 Query: 887 KDERVVSVERIRES 900 K + VV + R E+ Sbjct: 818 KRDAVVGIARNAEA 831 >gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299] Length = 803 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 348/839 (41%), Positives = 506/839 (60%), Gaps = 87/839 (10%) Query: 60 MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 M + + Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R LI+GQGNFGS Sbjct: 1 MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60 Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 VDGD AA RYTE R K + +L D+ KDTV+F NYD + +EP VL R P +L+NG Sbjct: 61 VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMAT IP HNL E++D + ++DNP+ D LME I+GPDFPTG I GR GI + Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIID 180 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRG + IR HIE T G +E IV+ E+PYQVNKA ++E IA L ++K+I I+++ Sbjct: 181 AYNTGRGRVRIRAKHHIE-TRGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEV 239 Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359 RDESDR G RVVIELK+ A +++++N LY+ T +++ F + ++A+ +P+ FTL +L Sbjct: 240 RDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLN 299 Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419 F++ R+ V++RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N A+ +L Sbjct: 300 VFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLEL 359 Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 R LS +Q++AIL++RL RLTGL RD + E Sbjct: 360 R--------------------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQE 393 Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539 L I E IL S +L+ IIK+EL ++++ + R T I + +++ ED I E MV Sbjct: 394 LMAIIAELESILKSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMV 453 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 VT++H GYVKRVP+ Y QRRGGKG+ V D+DF+ F+ +TH +++F +++G +Y Sbjct: 454 VTITHNGYVKRVPIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLY 513 Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVR 658 KV+R+P GS A+GKA++N+++L E+I I+P + DES + F T++G V+ Sbjct: 514 WLKVYRIPEGSRTAKGKAVVNLINLRPDEKIMEIIPTSDFDESKS----LAFFTRNGVVK 569 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFA 717 R LS+F I +G A+ LD DEI++ + T L+ T LGQC+RF + R Sbjct: 570 RTSLSEFSNIRSNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-Q 628 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR++ GVRGI KH DT+ + Sbjct: 629 GRSTRGVRGIKF--------------------------KH----------DTDFVV---- 648 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 D++V NI EQ +LTVS+KG GKRT+ ++R +NR+G G+ + +S + Sbjct: 649 DANVVDNI-----------EQELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--K 695 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +V V++ +++++ G +IRV + IR A R T GV+I + ++VVS+ + Sbjct: 696 TGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAK 754 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 18/208 (8%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF-FSSLGFVYKEKVW 604 G VKR LS + R G +V+ D D + I + T L F+SLG + Sbjct: 566 GVVKRTSLSEFSNIR--SNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLG-----QCI 618 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKL 662 R + + +G++ + +G + F D + +N+ ++ ++ G +R + Sbjct: 619 RFDVEKTREQGRSTRGV----RGIKFKHDTDFVVDANVVDNIEQELLTVSQKGIGKRTTV 674 Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 ++ + NR SG I+MKL ++ ++ + D+++ T +G+ +R + IR AGR Sbjct: 675 EEYRETNRAGSGVISMKLSAKTGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRK-AGR 733 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADAD 747 N+ GV +++ D+V+S+A D D Sbjct: 734 NTSGVIIVNVDAKDKVVSIAKCPKEDDD 761 >gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] Length = 864 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 369/911 (40%), Positives = 523/911 (57%), Gaps = 102/911 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ +DTVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 140 APLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +V + EV+V Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL A+ +DEV+ +IR S + AR LM DL Sbjct: 379 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLM----------DL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ + E+Q AILE++L RL L R I E + L +I+E +I Sbjct: 429 LE----------------IDEIQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ EL ++ ++ R+T +V DM ED I ED+VVTVS GYVKR Sbjct: 473 LASPVRQRGIVSAELAAIVEKFGDDRKTMLVPYDGDMSIEDLIAEEDIVVTVSRGGYVKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + E++ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYEAT---PYLVLATKGGLVKKTPLKDYDSPRS 649 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L S DE++ E + +DILL +K Q +RF + A+R GR + G Sbjct: 650 GGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSIRFTATDEALRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+S +GD+++SM +V T T+ + Sbjct: 709 VKGMSFREGDELLSMNVVRPG------------------------TFVFTATDGGYAKRT 744 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N+ E R Q R G GI+A + + + G+LV Sbjct: 745 NVDEYRVQ-----------------------------GRGGLGIKAAKI--VEDRGSLVG 773 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RE 899 V + D+I+ ++ G +IR VNEIR R T GV + + K + VV + R RE Sbjct: 774 ALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKRDAVVGIARNAEAGRE 833 Query: 900 SEIVDEAESTE 910 +E VD E+ + Sbjct: 834 AEEVDGDEAVD 844 >gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705] gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705] Length = 883 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 352/898 (39%), Positives = 514/898 (57%), Gaps = 95/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 40 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + +VQ AIL ++L LT + RD I E L +I + +DI Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP G+ Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGA 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V D+D D Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G GI+A V + GALV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E + Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854 Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 17/233 (7%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 LD DE++++ +++ D T +G + A + A + +R ++ D++++ Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477 Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793 L ADY I + QR++I + +EI + D + + E ++L Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +E ++TV+ GF KRT + ++R +R GKGI+ T K+ E + F + ++ + Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + ++KG + R+ E+ +R +KG + A DE + +V I E+ Sbjct: 592 LFFTNKGRVYRIKAYELPEGARDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644 >gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] Length = 855 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 354/892 (39%), Positives = 510/892 (57%), Gaps = 77/892 (8%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V + DEMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M G ++ + Sbjct: 7 ERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGGYRPDRGF 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC+RI G+VMG+YHPHG+ AIYD L R+AQ W +R +I GQGNFGS DP AA RYT Sbjct: 67 SKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDPAAAMRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 EC+L A ++ D+ ++TVDF+PNYDG EP VL +R PN+LVNG GIAVGMATNIP Sbjct: 127 ECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV +G + +P+ LDAL+E I+GPDFPT +I+G +GI++ Y TGRGS Sbjct: 187 PHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGTSGIEDMYRTGRGS 246 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306 + +R + IE+ + R Q+VVTE+PYQVN +++ KIA+LV R+ ++DLRDE S R Sbjct: 247 VTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDLRDESSSRV 306 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE++R A A V+LN LY++T LQS FS NM+AL P TL G + ++ + Sbjct: 307 GRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDDVPRTLTLDGFITNWIHHQI 366 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +V+ RRT+Y L KA +RAH+ GL A+ LD+V+ +IR SP + AR Sbjct: 367 DVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEAR------------ 414 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LI+L++ + E+Q AILE++L RL L R I +EL L I + Sbjct: 415 -TGLIELLE-------------IDEIQANAILEMQLRRLAALERQKILDELAELERMIAD 460 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL R I+ EL + D+ RR+RI+ D+ DED I E++VVT++ G Sbjct: 461 FTDILERPERQREIVSTELAEIVDKYGDDRRSRIIPADGDLSDEDLIPDEEVVVTITSGG 520 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y KR +YR Q RGGKG G +RD DFV LF + H +LFF++ G VY+ K + L Sbjct: 521 YAKRTKTDLYRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHL 580 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P A+G + +LS E+I ++ + E + Y+V AT+ G V++ +L+D+ Sbjct: 581 PEAGRDAKGGHVAGLLSFQPDEQIAQVLAVRDYEQAP---YLVLATRKGLVKKTRLTDYN 637 Query: 667 QINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 ++G IA+ D DE++ E ++D+LL ++ Q +RF ++ GR + GV Sbjct: 638 SPRQAGVIAINFRDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQLRPMGRATSGV 697 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+ D ++SM ++ A D Sbjct: 698 TGMKFRGEDDLLSMTVIRREHAALD----------------------------------- 722 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +EE E KL ++ TV++ GF K+T ++R+ R G GI+A ++ G LV Sbjct: 723 -AEEVADEDKL---YVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQITGAR--GELVGG 776 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + D D +I V+ G + R V+ + R T GV D+RVV++ R Sbjct: 777 LVLKDTDDVISVTSGGQVTRSLVSGVNPTGRGTMGVSFVKFKGDDRVVTIAR 828 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 15/150 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++S + EI D +G++S+E +L E+ ++T++ G+ KRT + Sbjct: 471 QREIVSTELAEIVDKYGDDRRSRIIPADGDLSDE---DLIPDEEVVVTITSGGYAKRTKT 527 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R+ +R GKG+R + + + L FP + I+ + G + R + A Sbjct: 528 DLYRVQHRGGKGVRGAQLRDGDFVEHL---FPTTAHHWILFFTTAGRVYRAKAYHLPEAG 584 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901 R KG + S DE++ V +R+ E Sbjct: 585 RDAKGGHVAGLLSFQPDEQIAQVLAVRDYE 614 >gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] Length = 836 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 338/898 (37%), Positives = 528/898 (58%), Gaps = 95/898 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I D+M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV N + Sbjct: 3 EGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG++++YD + RMAQ W++R +L++GQGNFGS+DGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K A +L D+ K+TVD N+D + EP VL R PN+LVNG GIAVGMATN+P Sbjct: 123 EARMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVVDG +A + N DI +D LME I+ PDFPTG +I G G++ A+ TGRG +VIR Sbjct: 183 PHNLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +H E+ +G R+ IVVTE+PYQVN M E+ + LV+E ++ +AD+ D++ + G R+V Sbjct: 243 AKAHFEEVNG-RDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 ELK+ A +V+LN L+++T+LQS FSVN +AL +P++ L ++ FV R +VV R Sbjct: 302 YELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIYHFVEHRHDVVYR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLD---EVVRIIRFSPNPETARRELMQRSWNASDIK 428 RT+Y L KA++R H+L G +A D + + IIRF P + +LM Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKP---KEDLMTE-------- 410 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L+E+Q AIL L+L R+ L + E L +I + Sbjct: 411 ------------------FELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIIDLE 452 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 DIL+ + R IIK+ELL +K + RR+ I D+ ED I + +V+T+S+ GY+ Sbjct: 453 DILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAGYI 512 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR ++ Y+ Q RGG G+ RD+DF+ LFI + H +LFF+ G + +V+ +P Sbjct: 513 KRTSVNEYKTQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPE 572 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 G +G+A+ N++++ + + ++ + ++ N+ YV+ ATK G +++ L + Sbjct: 573 GGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYS 632 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + ++G +A+ + DE+L + + I+L K G+ +RFP +R GR+ GVRG Sbjct: 633 RPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRA-VGRSGSGVRG 691 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL D+D DE I + ++E + Sbjct: 692 ISL---------------DSDKDEVIGMI------------------------AIENPL- 711 Query: 787 EERCQELKLKEQFILTVSEKGFGKR-------TSSYDFRISNRSGKGIRATDVSKINEIG 839 E+ +L VSE G+GKR T +RI+NR GKG++ +++ + G Sbjct: 712 ----------EETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITE--KTG 759 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 LVA+ V + D +++++ G IR+PV+ +R+ RAT+GV + + ++ + +V ++ Sbjct: 760 NLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVAKV 817 >gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701] gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701] Length = 866 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 355/911 (38%), Positives = 546/911 (59%), Gaps = 71/911 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 9 ESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RY Sbjct: 69 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRY 128 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVD+ N+DGS QEP V+ AR P++L+NG GIAVGMATN Sbjct: 129 TESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E+++G +A+I +P++D AL+ +I GPDFPTG ILGR GI+ Y TGRGS+ Sbjct: 189 IPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRETYTTGRGSVT 248 Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ I+D+RDESDR Sbjct: 249 MRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDGISDIRDESDR 308 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+VIEL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 309 DGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLRRMLQVFLEFR 368 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + TAR +L +R Sbjct: 369 IETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARLQLQERHG--- 425 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LSE+Q+ AIL+++L RLT L D IR E L +I Sbjct: 426 -----------------------LSEIQSDAILQMQLRRLTALEADKIRLEHEDLVTKIA 462 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL R R+LG+I+ EL+ +++ + RRT I++ +ED D I E VV ++ Sbjct: 463 DYKDILGRRERVLGLIEAELIQLRERYPSERRTEILDLEGGLEDIDLIANERSVVLLTEN 522 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G VY +R Sbjct: 523 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDRGVVYAVPAYR 582 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLSD 664 +P+GS A+G ++ +L + + E+IT+++ S++ +++ ++ T G ++R +LS Sbjct: 583 VPVGSRGAKGTPVVQLLPIPREEQITSLVAV----SAFDDDVQLLMLTSGGYIKRTRLSA 638 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722 F I +G IA+ L+ D + + +L+ + G + F ++ +R GR + Sbjct: 639 FANIRSNGLIAISLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGELRPL-GRTAR 697 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GVR ++L GD+++SM ++ AD + + + D+ Sbjct: 698 GVRAMALRPGDELVSMDVLPAELADQ-----------------VASSSASENEEEDAPEA 740 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G S+ ++L S G GKR FR+ R+G G+RA + ++ LV Sbjct: 741 GESSD---------GPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKFRRDGDV--LV 789 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898 + + ++++LVS++G ++R+ + I SRA GV + +R+ V + Sbjct: 790 GLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSEVVLVPPAPD 849 Query: 899 ESEIVDEAEST 909 E ++ D AE++ Sbjct: 850 EEDLADTAETS 860 >gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1] gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC] gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC] Length = 830 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 348/896 (38%), Positives = 535/896 (59%), Gaps = 91/896 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FL++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ PD+ ++ ++E++ GPDFPTG +I G GI++ Y TGRG I +R Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ + RE I++TE+PY VNK+ ++E+IA+LV +K + I+D+RDESD+ G RV Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ A+V R EV+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWVRHRTEVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ LD+VV IR S + E A+ +L+++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEK---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q+ AILELRL +LTGL + I+ E + L +I + Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL ++ TPRRT I + + ED I E +++T+S YVK Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPVKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E N ++ ATKHG V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ T E++ ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D+V++ IV ++D SV Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------RDDQSV---- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +V++E++ +E Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNE 814 >gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] Length = 826 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 330/740 (44%), Positives = 483/740 (65%), Gaps = 31/740 (4%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + ++ +++ I +V +T M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV Sbjct: 3 NDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 62 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA Sbjct: 63 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K A +L D+ K+T+D++ NYD + EPVVL AR PN+LVNG GIAVGM Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 182 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 TNIP HNL EV+ G ++ NPD+ LM++I GPDFPTG +I+GR GI AY TG+G Sbjct: 183 TTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGKG 242 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +IV+R ++IE RE+I+V+EIPY VNKA +++KIA+L REK I I +RDESD+ Sbjct: 243 NIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDESDQT 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+ P TL +LK ++ +E Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPHFLTLKQMLKYYLDHQE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RRTK+ L KA RAH+L GL IA+ ++DE+V+IIR S + + A+ L+ R Sbjct: 363 DVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 L + Q++AIL++RL RLTGL RD + E L ++I + Sbjct: 417 --------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIAD 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545 DIL+ R+ II ELL ++ RRT I ++ +EDED I ++++++T++H Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVISIEDEDLIEKQNVLLTLTHK 516 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ ++ Q RGGKG G+ +++ DF L STH +LFF++ G VY +K + Sbjct: 517 GYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYE 576 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G ++N+L L +GE+I T++ PE ++ Y+ F TK G V+R +S+F Sbjct: 577 IPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPE---GADDNYLFFITKMGTVKRTHVSEF 633 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I SG IA+ L DE+ +V T + +IL+ T LG V F +R GR + GVR Sbjct: 634 SNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPM-GRTAAGVR 692 Query: 726 GISLAKGDQVISMAIVLHAD 745 GI+L D V+ ++ D Sbjct: 693 GINLRDNDYVVGSEVIKPND 712 Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 20/155 (12%) Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 YDE + K +RR G E+ S++++ +E K+ +LT++ KG Sbjct: 472 YDELLDIQKRFGDERRTEIG-ASEVISIEDEDLIE-------------KQNVLLTLTHKG 517 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 + KR +F+ NR GKGI+ V + L+ + +D ++ ++KG + Sbjct: 518 YIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYS---STHDMLLFFTNKGKVYSKKA 574 Query: 868 NEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 EI R KG+ I K E++ +V I E Sbjct: 575 YEIPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPE 609 Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 107/252 (42%), Gaps = 18/252 (7%) Query: 638 EDESSWNNLYVVFATKH-GNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQEN 694 EDE V+ H G ++R +++F NR GK M + + D + + + Sbjct: 499 EDEDLIEKQNVLLTLTHKGYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHD 558 Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDER 751 +L T G+ I F GR + G V + L KG++ I I + AD D Sbjct: 559 MLLFFTNKGKVYSKKAYEIPEF-GRTAKGLPIVNLLQLEKGEK-IQTVINIPEGAD-DNY 615 Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI--SEERCQELKLK-EQFILTVSEKGF 808 + ++ M +R E ++++N + + +E L +Q IL + G+ Sbjct: 616 LFFITKMGTVKRT---HVSEFSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGY 672 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 + D R R+ G+R ++ + + + P ND+++++S+KG R P + Sbjct: 673 AVTFNEGDVRPMGRTAAGVRGINLRDNDYVVGSEVIKP---NDEVMVISEKGYGKRTPAS 729 Query: 869 EIRIASRATKGV 880 E I R KG+ Sbjct: 730 EYPIKGRGGKGI 741 >gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 883 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 355/906 (39%), Positives = 519/906 (57%), Gaps = 95/906 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 40 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM+ L Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLME----------L 448 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L LT + RD I E L I + +DI Sbjct: 449 LD----------------IDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRRIADYIDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRTRI+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFAPDETIQTVLSIPNYEVAR---YLVLATRSGKVKKTPLAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C ++DI+L ++LG ++F ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAQDDIILVSRLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V +D+D D Sbjct: 730 VQGMKFRADDSLLAMDVV-PSDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G G++A V + GALV Sbjct: 755 ----------------LFVVTNEGFAKRTAIGEYRLQGRNGLGVKA--VQLVEGRGALVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E + Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDMILSIARNEEKDEP 856 Query: 904 DEAEST 909 +E T Sbjct: 857 EEDGGT 862 >gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] Length = 830 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 347/896 (38%), Positives = 534/896 (59%), Gaps = 91/896 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FL++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ PD+ ++ ++E++ GPDFPTG +I G GI++ Y TGRG I +R Sbjct: 184 PHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKVR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ + RE I++TE+PY VNK+ ++E+IA+LV +K + I+D+RDESD+ G RV Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S++V++N+LY++T +Q F NM+AL+ P + ++ +V R EV+ Sbjct: 304 VLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISVWVRHRTEVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ LD+VV IR S + E A+ +L+++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEK---------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q+ AILELRL +LTGL + I+ E + L +I + Sbjct: 414 ----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL ++ TPRRT I + + ED I E +++T+S YVK Sbjct: 458 LADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E N ++ ATKHG V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFSN 634 Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE++ +V ++E ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D+V++ IV ++D SV Sbjct: 694 VSLKNEKDRVVACQIV----------------------------------RDDQSV---- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 716 ---------------LVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V D+D I+L+S +G IR+ + ++R+ R+T+GV + + + +V++E++ +E Sbjct: 759 SVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNE 814 >gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 832 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 355/879 (40%), Positives = 519/879 (59%), Gaps = 88/879 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL M + ++ YVKCA Sbjct: 30 VIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCA 89 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEV+G YHPHG+A++Y+AL RM QD+SLR+ LI+GQGNFGS+DGD PAA RYTE RL Sbjct: 90 KIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARL 149 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A LL D+ K+TV F PNYD + Q+P VL A +PN+LVNG GIAVGMATNIP HNL Sbjct: 150 EKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNL 209 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +D +AVI NP+I + ++ II GPDFPT +I+G G+ +AY TG+GSI IR Sbjct: 210 KETIDAVIAVIRNPEITIPEILRIIPGPDFPTSGIIIGGEGLISAYTTGKGSIRIRSKVE 269 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ RE IVVTEIPYQVNK +LEKI ++V EK+I I+++ D SDR+G R+ I +K Sbjct: 270 IEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHIK 329 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A VILNQLY+ T LQ + + M+A+ KP+ F + IL A+ A R +V+V+RT++ Sbjct: 330 KDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYSAHRRDVIVKRTQF 389 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ N+++V+++IR S NP A+++LM R Sbjct: 390 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVR--------------- 434 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ+ AILE+RL RLT L I +EL + I + DIL+ S Sbjct: 435 -----------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKPS 483 Query: 496 RLLGIIKQELLSVKDELDTPRRT---RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ I+ EL V D+ T R+T ED I E+MV+ +++ ++KR+P Sbjct: 484 RINDIVCTELQEVGDKYGTKRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLP 543 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + ++ Q+RGGKG G+ + +D + + TH S++FFS++G VY K + LPI S + Sbjct: 544 IDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKE 603 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGK+L I++L + E +++I F + + L V TK G ++R +L +F + +SG Sbjct: 604 ARGKSLKAIINLREDEYVSSIFTFRGQDMDKDLLLV---TKRGFIKRIQLKEFGNVKKSG 660 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ VE ++++++ +K G +R + IR GR + GV G+ LA+ Sbjct: 661 IIAIGLREGDELIKVEAIEDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAED 719 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D ++ ++ K+ + + +SEE Sbjct: 720 DTIVGLS----------------KYKEGEDIFV-------------------VSEE---- 740 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 G+GKR +F R GKG+ V++ N G V V D+ Sbjct: 741 --------------GYGKRLGFEEFAAKGRGGKGMAYLKVTEKN--GFSVGTGSVGSEDE 784 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +IL++ +G IR+ +I R GV I +++V Sbjct: 785 VILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKV 823 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 17/202 (8%) Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLI 765 R PI + R G++G+S + D + I A + H + I + M A I Sbjct: 541 RLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPI 599 Query: 766 SGDT------EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 + + I +L+ D V +I R Q++ ++ +L V+++GF KR +F Sbjct: 600 ASKEARGKSLKAIINLREDEYV-SSIFTFRGQDM---DKDLLLVTKRGFIKRIQLKEF-- 653 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 N GI A + + +E L+ V + D D++++ S KG +R+ N IR R G Sbjct: 654 GNVKKSGIIAIGLREGDE---LIKVEAIEDKDEVMIFSKKGLALRIEGNIIRAQGRTASG 710 Query: 880 VVIFSTAKDERVVSVERIRESE 901 V A+D+ +V + + +E E Sbjct: 711 VTGMRLAEDDTIVGLSKYKEGE 732 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 96/212 (45%), Gaps = 27/212 (12%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSVLFFSSL 595 ++ V+ G++KR+ L + G +SG++ +R+ D + + + V+ FS Sbjct: 636 LLLVTKRGFIKRIQLKEF-----GNVKKSGIIAIGLREGDELIKVEAIEDKDEVMIFSKK 690 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G + I Q R + + + L + + I + + E E +++VV ++ G Sbjct: 691 GLALR---IEGNIIRAQGRTASGVTGMRLAEDDTIVGLSKYKEGE----DIFVV--SEEG 741 Query: 656 NVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVR---FP 709 +R +F R GK +A + SV T + E++++L T+ G +R F Sbjct: 742 YGKRLGFEEFAAKGRGGKGMAYLKVTEKNGFSVGTGSVGSEDEVILITQQGMTIRINAFD 801 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 IS + GR +VGVR + L D+V ++ Sbjct: 802 ISKL----GRTAVGVRIVDLKDNDKVQDFTVL 829 >gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902] gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902] Length = 886 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 352/886 (39%), Positives = 524/886 (59%), Gaps = 62/886 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + +EM SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 19 IIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE RL Sbjct: 79 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESRL 138 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL+D+ +TVD+ N+DGS QEP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 139 RALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATNIPPHN 198 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++DG +A+I+NP+I L+ +I GPDFPTG ILGR GI+ Y +GRGS+ +RGV+ Sbjct: 199 LSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAGIRETYLSGRGSVTMRGVA 258 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +E DR+ +++T +PYQ NKAA++E+IAE+V +K++ I+D+RDESDR G R+ Sbjct: 259 EVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKKLEGISDIRDESDRDGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR E + Sbjct: 319 VVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRIETIE 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +R H+L+GL +A+ LD ++ +IR +P+ TAR +L R Sbjct: 379 RRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARTQLQDRHG-------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS VQ AIL+++L RLT L D IR E L +I + DI Sbjct: 431 ------------------LSAVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R R+LG+I++EL+ +++ PRRT I++ +ED D I E VV ++ GY+KR Sbjct: 473 LGRRERVLGLIQEELVQLRERHSVPRRTEILDLAGGLEDIDLIANERSVVLLTETGYLKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P+S + A RG +G++G + E+ V + H ++L FS G Y +R+P S Sbjct: 533 MPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G ++ +L + + E IT+++ E + L + T+ G ++R +LS F I Sbjct: 593 RTAKGTPVVQLLPIPREEAITSLLAVSEFNDDTDLLML---TQGGFIKRTRLSAFSNIRS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L+ D + V + +L+ +K G + F ++ +R GR + GVR ++ Sbjct: 650 NGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLADGELRPL-GRTARGVRSMN 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L KGD ++SM ++ A+ ++I + E + EG Sbjct: 709 LRKGDSLVSMDVL---PAELADQIAASADDAGDGDDAGDVAETAV------AAEG----- 754 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L S G GKR FR+ R+G G+RA + LV + + Sbjct: 755 ---------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFR--TDADELVGLRVLG 803 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++LVS+KG ++R + I SRA GV + K +R+ V Sbjct: 804 AGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDRLADV 849 >gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] Length = 921 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/890 (40%), Positives = 520/890 (58%), Gaps = 95/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ + KC+ Sbjct: 36 VEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFNKCS 95 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG+++IYDAL R+ QDWSLR L++GQGNFGS DP AA RYTECR+ Sbjct: 96 RVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYTECRM 155 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + L+ D+ K TVDF PNYDG EP VL +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 156 APLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIPPHNL 215 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV + V+++PD LDA+M I+GPDFPTGA+I+GR GI++AY TGRGSI++R Sbjct: 216 REVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIMGRKGIEDAYRTGRGSIIMR 275 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VV+E+PYQVN ++ +KIAE V++ R+ IAD+RDE S R G R+ Sbjct: 276 AVVEVEEIQG-RQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRTGQRL 334 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI L+R A A V+LN LY++T LQ+ F NM+AL P + ++ +V + +V+ Sbjct: 335 VIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIDAFIRHWVDHQIDVIQ 394 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YLL +A DR H+L GL A+ LDEV+ +IR SP E AR L Sbjct: 395 RRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAAR-------------DGL 441 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL++ + E+Q RAILEL+L RL L R I +E +++ EI++ DI Sbjct: 442 IDLLE-------------IDEIQARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDI 488 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+ R I+ EL ++ ++ RR+ I+ G DM ED I ED+VVT++ GY K Sbjct: 489 LAKPERQRNIVSDELGTIVEKYGDDRRS-IIHGFDGDMSMEDLIPEEDVVVTITRGGYAK 547 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + YR+Q+RGGKG G +R ED V F ++H +LFF++LG VY+ K + LP Sbjct: 548 RTKVDAYRSQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDA 607 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S ++G+ + NI++ E I ++ E S Y+V ATK+G V++ +LS++ Sbjct: 608 SRDSKGQHVANIMAFQPDEHIAQVLALRNYEIS---PYLVLATKNGLVKKTRLSEYDSPR 664 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 G IA+ L DE++ + +D+LL +K GQ VRF + +R GR++ GV G+ Sbjct: 665 TGGLIAVNLRDEDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPM-GRSTSGVTGM 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D ++SM+++ EE T Sbjct: 724 KFRGEDSLLSMSVI----------------------------EEGT-------------- 741 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFP 846 + + V E G KR+ + + N G+ I V+K E G LV Sbjct: 742 ---------DPDVFVVFESGLAKRSQASQW---NVKGRAILGVTVAKQTEKGGDLVGALT 789 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V+++D++++V ++G ++R V+E+R+ R T GV K++ +V V R Sbjct: 790 VSEDDEVMVVFERGNIVRSRVDEVRLTGRNTAGVWFAKPGKNDAIVGVAR 839 Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 9/148 (6%) Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 QR ++S + I D S + G + ++L +E ++T++ G+ KRT + Sbjct: 495 QRNIVSDELGTIVEKYGDDRRSIIHGFDGDMSMEDLIPEEDVVVTITRGGYAKRTKVDAY 554 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R R GKG++ + + + F + ++ ++ G + R E+ ASR + Sbjct: 555 RSQKRGGKGVKGASLRGEDVVAHF---FTTTSHHWLLFFTNLGRVYRAKAYELPDASRDS 611 Query: 878 KG---VVIFSTAKDERVVSVERIRESEI 902 KG I + DE + V +R EI Sbjct: 612 KGQHVANIMAFQPDEHIAQVLALRNYEI 639 >gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551] gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11] gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987] gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A] gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85] gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503] gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172] gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C] gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem] gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A] gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85] gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A] gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85] gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987] gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85] gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503] gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210] gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A] gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002] gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003] gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004] gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005] gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006] gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008] gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007] gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009] gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551] gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C] gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem] gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11] gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172] gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A] gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85] gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987] gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503] gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85] gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A] gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002] gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003] gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004] gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005] gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006] gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007] gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008] gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009] gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A] gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148] Length = 838 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA] gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA] Length = 883 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 352/898 (39%), Positives = 513/898 (57%), Gaps = 95/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 40 IQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 99 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIY L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 100 RVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPGDDPAAAMRYTECRM 159 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 160 APLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 219 Query: 196 GEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD + L+E II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 220 REVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 279 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+ Sbjct: 280 AVVNTEEING-RMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQRL 338 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + +V+ Sbjct: 339 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLDVIA 398 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YL +A +R H+L G A+ LDEV+ +IR S + +TAR LM Sbjct: 399 RRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTGLM------------ 446 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + +VQ AIL ++L LT + RD I E L +I + +DI Sbjct: 447 --------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAEHEELQRKIADYIDI 492 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 493 LAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGFIKR 552 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 553 TKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 612 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 613 RDSKGQHVANLLQFAPDESIQTVLSIPNYEVAK---YLVLATRSGKVKKTPLAEYDSPRQ 669 Query: 671 SGKIAMKL------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVG 723 G IA++L ++ DE++ C E+DI+L +KLG ++F ++ GR + G Sbjct: 670 GGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPMGRQTAG 729 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ D +++M +V D+D D Sbjct: 730 VQGMKFRNDDSLLAMDVV-PGDSDKD---------------------------------- 754 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + V+ +GF KRT+ ++R+ R+G GI+A V + GALV Sbjct: 755 ----------------LFVVTNEGFAKRTAISEYRLQGRNGLGIKA--VQLVEGRGALVG 796 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V+++DQ++ + G +IR V+E++ R T+GV K + ++S+ R E + Sbjct: 797 ALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKGDTILSIARNEEKD 854 Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 17/233 (7%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 LD DE++++ +++ D T +G + A + A + +R ++ D++++ Sbjct: 422 LDMLDEVIALIRASEDTDTARTGLMGLLDIDQVQADAILA----MQLRTLTRMNRDKIVA 477 Query: 738 MAIVLHAD-ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQEL 793 L ADY I + QR++I + +EI + D + + E ++L Sbjct: 478 EHEELQRKIADY---IDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDL 534 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +E ++TV+ GF KRT + ++R +R GKGI+ T K+ E + F + ++ + Sbjct: 535 IAEENVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGT---KLREDDVVDHFFLTSTHNWL 591 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903 + ++KG + R+ E+ SR +KG + A DE + +V I E+ Sbjct: 592 LFFTNKGRVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEVA 644 >gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] Length = 813 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/888 (40%), Positives = 521/888 (58%), Gaps = 95/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV + K + Sbjct: 15 IDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GE MG YHPHG++AIYD L RM+QD+S+R L++GQGNFGSVDGDP AA RYTE R+ Sbjct: 75 SVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + LL D+ K+TVDF NYD +EP VL A PN+LVNG GIAVGM+TN+P HNL Sbjct: 135 SPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVGMSTNVPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D + +ID+P+ + LME ++GPDFPTGA I+GR I +AY TGRG + +R + Sbjct: 195 REVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIVGREAIHSAYTTGRGRLRVR--AE 252 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ D RE+IV+TE+P+Q NK+ ++E+IAE V E +I I+DLRDESDR G R+ I+L Sbjct: 253 FEREQADKRERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDRDGIRIAIDL 312 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRGA+ADV+ NQL + L+ F V +AL +P+ L L+ +V R++VV RR++ Sbjct: 313 KRGANADVVENQLLEH-HLERTFGVINLALVDGQPQVLDLKETLEHYVEHRKDVVRRRSE 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L +A DRAH+L G A+ N+D VV +IR + + A+ L SD D Sbjct: 372 YDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEAL-------SDEFD----- 419 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 SE Q I+ ++L LT L R++I E ++L EI+ IL++ Sbjct: 420 --------------FSEAQAEHIVRMQLGSLTSLERNEIDEEYDALVEEIERLETILANE 465 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 S LLG+IK+EL +++E RRT I+EG + ED I ED ++ V+ YVKR+P+S Sbjct: 466 SELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEEDSLILVTEDDYVKRMPVS 525 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 + Q RGGKG G +++ D V+ +F +TH +L F++ G Y+ + + +P S AR Sbjct: 526 AFDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTAR 585 Query: 615 GKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 GK+ +NIL L+ E +T ++ F ++E ++ T++G V+R + S F ++ S Sbjct: 586 GKSAVNILDLDPDEELTAVVNTDDFDDEE------FLTMVTENGYVKRTEASAFERVRSS 639 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA L+ D ++ V D+L+ T+ G +RFP S R GR + GV GI L Sbjct: 640 GLIAASLEEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAM-GRTARGVNGIKLQG 698 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+ L++ D Sbjct: 699 GDSVVG--------------------------LVTAD----------------------- 709 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + + +LT++E G+GKRT ++R +R GKG+ D+ N G + AV V+++D Sbjct: 710 ----ESRSLLTITENGYGKRTPFSEYRTQSRYGKGL--IDIKTGNRNGPVAAVESVSEDD 763 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++++SD ++R+ ++ R TKGV++ A D+RV SV+ I E Sbjct: 764 DLVVMSDDAQIMRIHAADVSRVGRNTKGVIVMRLAGDDRVASVDVIPE 811 >gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii ATCC 33806] gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii ATCC 33806] Length = 838 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 348/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ YVK A Sbjct: 7 ILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS D PAA RYTECRL Sbjct: 67 RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG GIAVGMATNIP HNL Sbjct: 127 TPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NPD D L+A ME I+GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 187 RELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGTQGIKDAYTTGRGSIRMR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN ++ IAE VR+ ++ I+ + DE SDR G R+ Sbjct: 247 GVTSIEE-EGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRI 305 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +VA + EV+V Sbjct: 306 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 365 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR S + ARR L Sbjct: 366 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARR-------------GL 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL + + EVQ AIL ++L RL L R I +EL + I + DI Sbjct: 413 IDL-------------LTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDI 459 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + D+ RR++I+ D+ +ED I RE++VVT++ GY KR Sbjct: 460 LASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYAKR 519 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 520 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 579 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ +S + Y+V AT G V++++LSD+ Sbjct: 580 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESARS 636 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G IA+ L+ D+++ C+ E+D+LL ++ GQ +RF ++ GR++ GV+G+ Sbjct: 637 GGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRF 696 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D +++M +V D Y Sbjct: 697 RGDDHLLAMTVV--RDGSY----------------------------------------- 713 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + G+GKRTS ++ S + G+ + G L+ V++ Sbjct: 714 ----------LLVATAGGYGKRTSMDEY--SVQGRGGVGVVTFKYNPKRGKLIGALAVDN 761 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +DQI ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 762 DDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 808 >gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy] gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy] Length = 855 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 363/906 (40%), Positives = 520/906 (57%), Gaps = 102/906 (11%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 +E E SV +++EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +MG+ N Sbjct: 2 EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + KCARI G+V+GKYHPHG+A++YDAL R+AQD+SLR ++ QGNFGS+DGDP AA Sbjct: 62 TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE ++ + +L D+ K+TV+F PNYD S QEP VL A +P +L NG GIAVGMAT Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+ HNL E+ D AVIDNPDI +D LME I+GPDFP+G +I G GIK+A+ TGRG I Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIICGLQGIKDAFMTGRGKI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 V+R V IE + D +QIV TEIPYQVNKA +++KI +L ++ I I+ +RDESDR+G Sbjct: 242 VVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGI 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V+ELK GA V+LNQL+ T+LQS F+VN +AL +P+ TL +L ++ REEV Sbjct: 302 RIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALVQGRPQMLTLKDMLVYYIRHREEV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT++ L KA++RAH+L GL I + N+DEV++II+ S + A L+ R Sbjct: 362 VTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSR-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 L ++Q +AI++++L RL+ L I EL L +I Sbjct: 414 ------------------FGLDQIQAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQ 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVTVSH 544 ++LS ++L +++ E+ ++ L P+ R+ E L ED I E +VV +S+ Sbjct: 456 EVLSDEGKILKLVQSEVRALPSSL-VPKDRRLTKIAREELGQSTLEDFIKDEQVVVLISN 514 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G+ KR+ Y A R GKG ++D DFV +F+ TH V+F ++ G Y KV+ Sbjct: 515 KGFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVF 574 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S A+G ++ NIL L E+IT+I+ F E + Y++ AT+ G V++ L++ Sbjct: 575 EIPEASKTAKGTSIKNILQLETTEKITSIISFKE---FSEDHYLMMATRDGVVKKVSLNN 631 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F+ G A+ LD DE+LS + + ++++L TKLG+ +RF +R GR S GV Sbjct: 632 FVNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGLRFRQDNVRAM-GRASRGV 690 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RGI L DQV + LK DS+ Sbjct: 691 RGIRLLANDQVAGL------------------------------------LKVDST---- 710 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA---- 840 + IL ++E G GK+ + F + R +G KI +G Sbjct: 711 -------------KRILMITENGQGKQVNFDSFTVHGRGTQG------QKIYRLGGKASF 751 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDE--RVVSVER 896 +V V V+D + ++ + G +RV VN I I R GV + S A D + S ER Sbjct: 752 IVGVLSVDDENDVVCATLMGQTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIASTER 811 Query: 897 IRESEI 902 E E+ Sbjct: 812 DDEEEV 817 >gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001] gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010] gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011] gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001] gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010] gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011] Length = 838 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ +D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] Length = 820 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 348/883 (39%), Positives = 518/883 (58%), Gaps = 91/883 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+S SITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RRIL+ M++ G+ N+ + KCA Sbjct: 9 ISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHNRAFDKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GEV+ YHPHG++++YD L RMAQ W +R LI+ QGNFGSVDGD PAA RYTE RL Sbjct: 69 GVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAYRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL ++ +DTVDF NY S EP VL A PN+L+NG GIAVGMATNIP HNL Sbjct: 129 TAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG-VS 254 E++DG A IDNP+I + L E+I+GPDFPTG I+GR GI TGRG + +RG V+ Sbjct: 189 DELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRIIGRKGIDEYMNTGRGIVRMRGTVT 248 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 GDRE+I+++ IPY VN+A ++ KIAELV K + I+DLRDESD + R+VIEL Sbjct: 249 SEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESD-ENTRIVIEL 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +VI+++LY+ T+L++ F VNM+AL+ +P++ + ++ ++ R EV+ RRT Sbjct: 308 KRGEFPEVIISKLYKKTALEASFGVNMLALDNKRPKQMNMKEMINCYIDHRREVIYRRTA 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA DRAH+L G IA+ NLD+ ++IIR S N + A+ L ++ Sbjct: 368 FRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEKYP------------ 415 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LS+ Q AIL+LRL +LTG+ R I E L I+E IL + Sbjct: 416 --------------LSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENE 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 +LL IIK+EL +K++ +PR+ IV D+ D +E +T+SH G++KRV S Sbjct: 462 YKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +R Q+RGGKG G ++DFV +F +TH +++FF + G VY EKV+ LP GS ++ Sbjct: 522 EFRTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSK 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G+++ N+L L + E+I ++ E +N +V TKHG V++ L+ + + G I Sbjct: 582 GRSINNVLQLQKEEQIAAMICVKEITEDFN---LVMCTKHGTVKKTNLAAYKNFRKGGII 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + +D D +++V+ +++++++ T LG+ +RF S +R GR + GVRG+ L++ D Sbjct: 639 GINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLRE-QGRATRGVRGVKLSEKDY 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 +M +V N+S+ Sbjct: 698 AQAMEVV----------------------------------DNESA-------------- 709 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L G GKRT+ +F + R G G+ A + + GAL V ++D+I+ Sbjct: 710 -----LLICGINGQGKRTTFDEFPLQKRGGSGVIAAKTAGV--AGALA----VRESDEIM 758 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++ G +R V +I + R TKGV + K + ++ + RI Sbjct: 759 MLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIARI 801 >gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv] gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012] gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium tuberculosis H37Rv] gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra] gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012] Length = 838 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ +D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136] Length = 891 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 353/910 (38%), Positives = 538/910 (59%), Gaps = 76/910 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E I +++ +E++ S+L Y+++VI+ RA+PD+RDGLKP RRIL+ M ++ + KK++ Sbjct: 3 EDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKKHM 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCA+I G+ G YHPHG A IY L MAQ WS+R L+ QGNFGSV+GDPPAA RYTE Sbjct: 63 KCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL L+DD+ K+TVDF PNYD EPVV A +PN+LVNGG GIAVGMATN+P Sbjct: 123 ARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNLPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+VDG A IDNP+I L LM+ +RGPDFPTG +LG GI++ + TG GS+ IRG Sbjct: 183 HNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLLGTAGIRDYFETGHGSLRIRG 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + I +T G + QI++T IPY VN+A + ++I EL EK I ++ +RDESD + RVV+ Sbjct: 243 HAEISET-GTKPQIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESD-ENTRVVV 300 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +L+R A V+LN LY+ TSL++ FSV+M+A++ +P +L + ++ R EV++RR Sbjct: 301 DLRREARPQVVLNNLYKQTSLETTFSVHMLAIDNRRPRLLSLKDAISCYIEHRREVIIRR 360 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 TKYLL +A A L L +A++ LD+ +++IR + + + A + ++ + L Sbjct: 361 TKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQSLGI 420 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LI S +I S G +++Q + IL+LRL +LT L R ++ + +L I + +DIL+ Sbjct: 421 LI-RSQPSIRS-GRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDILA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 SR+L IIK EL +++ + T R T+I ++ ED I E +VT++H G+VKR Sbjct: 479 KESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANERNIVTITHRGFVKRTL 538 Query: 553 LSVYRAQRRGGKGRSGVVMRD-------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 S +R Q RGGKG G+ R+ DFV LF S H ++FF++ G VY E+V++ Sbjct: 539 ASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNTGRVYVERVYQ 598 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP----EDESSW-NNLYVVFATKHGNVRRN 660 +P + +G+++ N+L+L E+I ++ DE W ++ +V+FATK G V++ Sbjct: 599 VPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLFATKDGTVKKT 658 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 +L+DF I + G IA+KLD ++++ V ++I L T G CV+ + IR GR Sbjct: 659 ELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRPM-GRA 717 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV GI + D V+S+ V DE +AQ Sbjct: 718 AAGVMGIRPGETDHVVSLTAV-------DE--------TAQ------------------- 743 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L VSE G GKRT ++R +NR KG+ +V++ + G Sbjct: 744 -------------------LLVVSENGLGKRTPFEEYRKTNRGAKGVTTMNVTE--KTGN 782 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +VA V+++D+++L++ G +R+ V +IR R +GV + + ++ E + V ++ Sbjct: 783 VVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRNAQGVKLMNLSEGETIQDVAKV--- 839 Query: 901 EIVDEAESTE 910 I D+ E E Sbjct: 840 -IPDDEEKVE 848 >gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv] Length = 838 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/914 (39%), Positives = 522/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD+L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ +D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLVSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266] gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266] Length = 851 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 349/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ YVK A Sbjct: 20 ILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS D PAA RYTECRL Sbjct: 80 RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG GIAVGMATNIP HNL Sbjct: 140 TPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NPD D L+A ME I+GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 200 RELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGTQGIKDAYTTGRGSIRMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN ++ IAE VR+ ++ I+ + DE SDR G R+ Sbjct: 260 GVTSIEE-EGSRQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDRVGMRI 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +VA + EV+V Sbjct: 319 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR S + ARR L Sbjct: 379 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARR-------------GL 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL + + EVQ AIL ++L RL L R I +EL + I + DI Sbjct: 426 IDL-------------LTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIADLKDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + D+ RR++I+ D+ +ED I RE++VVT++ GY KR Sbjct: 473 LASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITSTGYAKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 533 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ +S + Y+V AT G V++++LSD+ Sbjct: 593 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATVQGRVKKSRLSDYESARS 649 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G IA+ L+ D+++ C+ E+D+LL ++ GQ +RF ++ GR++ GV+G+ Sbjct: 650 GGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPMGRSTAGVKGMRF 709 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D +++M +V D Y Sbjct: 710 RGDDHLLAMTVV--RDGSY----------------------------------------- 726 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L + G+GKRTS ++ S + G+ + G L+ V+D Sbjct: 727 ----------LLVATAGGYGKRTSMDEY--SVQGRGGVGVVTFKYNPKRGKLIGALAVDD 774 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +DQI ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 775 DDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 821 >gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A] gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A] Length = 872 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 352/906 (38%), Positives = 537/906 (59%), Gaps = 72/906 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E++DG +A+I NP+++ LM II+GPDFPTG ILGR+GIK Y +GRGSI Sbjct: 194 IPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSGRGSIT 253 Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +++TE+PYQ NKA ++E+IA++V +K++ IAD+RDESDR Sbjct: 254 MRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R + V+LN L++ T LQ+ FS NM+AL +P +L +L+ F+ FR Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + +RTKYLL KA R H+L+GL +A+ LDE++ +IR + + TA+ +L + Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+++Q+ AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKIT 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+ + R+ I K EL +K++ +T RRT I++ +ED D I E VV ++ Sbjct: 468 DLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + A RG +G++G + E+ V + H S+L FS G Y +R Sbjct: 528 GYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSD 664 +P S A+G ++ +L + + E IT+++ SS+++ Y++ T+ G ++R LS Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLSV----SSFDDENYLLMLTRGGYIKRTPLSA 643 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 F +I +G IA+ L+ D + V + +L+ +K G + F + S +R GR++ Sbjct: 644 FSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPL-GRSAR 702 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+ ++L GD ++SM ++ AD+ ++ + S Sbjct: 703 GVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESEG---------------- 746 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ++L S G GKR FR+ R+G G+RA K + LV Sbjct: 747 ---------------PWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD--ELV 789 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + + ++++LVS++G ++R ++I SRA GV I +++ V + +I Sbjct: 790 GLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849 Query: 903 VDEAES 908 D+ E+ Sbjct: 850 NDDDEN 855 >gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] Length = 808 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/885 (40%), Positives = 519/885 (58%), Gaps = 86/885 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ + V + EM+NSYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+ N+ Y Sbjct: 3 EKSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R LI+G GNFGS+DGD PAA RYT Sbjct: 63 RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A L+ D+ KD VDF PNYD S +EPVVL + P +L+NG GIAVGMATNIP Sbjct: 123 EVRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE++D + +I+ P +++ L+ I+GPDFPTG +I+G GI+ +Y TG+G + +R Sbjct: 183 PHNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIGTKGIRESYLTGKGKLTVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G IE+T + I++ EIPY VNK+ +L +IAELV+EK+I I DLRDESDR G RVV Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELK+ A +++NQLY++T LQ+ F V M+A+ +P+ F L +L F+ R++VV+R Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQPKIFNLKELLTIFLEHRKDVVIR 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA+ RAH+L GL IA+ +LDEV+ IIR + N E A+ +LM R Sbjct: 363 RTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR----------- 411 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L++ Q +AIL++RL +LT L ++ + E+ + I IL Sbjct: 412 ---------------FKLTQNQAQAILDMRLHQLTRLEKERLMEEMKQIKENISILERIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L +I +EL +K + R+T I E D+ ED + V+ ++ GY+KR Sbjct: 457 KDEKELWRVISEELKEIKKKYADERKTSIEEEEKSDITIEDILPDNPEVICITQDGYIKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +PLS Y+ QRRGGKG + + ++D +T + ST +++ FS+ G VY K + L S Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETS 576 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 Q++G A+ L++ ERIT I+ E NLY F T G V++ + +F + + Sbjct: 577 RQSKGIAIKEYLNIENEERITEIISLSE---LPKNLYFFFITSKGIVKKTPVEEFENVRK 633 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 SG A+K+ D +++V + N+I++ T+ G +RF R GR + GV GI L Sbjct: 634 SGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPM-GRVAQGVIGIKLR 692 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 K D VI G I +E Sbjct: 693 KDDSVIG---------------------------------------------GVILQESK 707 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q I+ V++ G GKR + +F R G GIRA ++ ++ G L+ V V++N Sbjct: 708 Q--------IVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKIT--SKTGDLIGVKNVSEN 757 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 D+I++ + KG +IR+PVN I I SR ++GV + +D+ VVS++ Sbjct: 758 DEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDDSVVSMD 802 Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 5/106 (4%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 K + ++ KG K+T +F N GI A KI E LV VF + N++II+ Sbjct: 607 KNLYFFFITSKGIVKKTPVEEF--ENVRKSGIYAI---KIGEGDFLVNVFLTSGNNEIII 661 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 + KG IR + R R +GV+ KD+ V+ ++ES+ Sbjct: 662 FTRKGNAIRFHEKDTRPMGRVAQGVIGIKLRKDDSVIGGVILQESK 707 >gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] Length = 841 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 333/733 (45%), Positives = 461/733 (62%), Gaps = 37/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 13 VEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDSGFRPDRGYNKCS 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS DP AA RYTE RL Sbjct: 73 RVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +DTVDF NYDG QEP VL +R PN+LVNGG GIAVGMATNIP HNL Sbjct: 133 DPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EVVDG + +DNPD D L ALM+ I+GPDFPT ILG GI +AY TGRGSI +R Sbjct: 193 REVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGTQGIADAYRTGRGSIRMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ + R +VVTE+PYQVN ++E IA L R+ +I IAD+ DES+ R G R+ Sbjct: 253 AVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIADIADESNSRGGMRI 312 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F VNM+AL P L +++ +V + +V+V Sbjct: 313 VITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDGVPRTLRLDQMVRHYVNHQIDVIV 372 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAHVL GLA A+ +LD V+ +IR SPN + AR LM+ L Sbjct: 373 RRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTGLME----------L 422 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL+++L +L L R I +EL L +I + D+ Sbjct: 423 LD----------------IDEVQATAILDMQLRKLAALERQRILDELAELEAKIADLQDV 466 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R I++ ELL + ++ RRT+I+ D+ ED I ED+VVT++ GY KR Sbjct: 467 LDKPERQREIVRTELLEITEKYGDDRRTKIIPYEGDVSIEDLIAEEDVVVTITRTGYAKR 526 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH VLFF++ G VY+ K + LP + Sbjct: 527 TKTDLYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEAN 586 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ ERI +++ P E + Y++ TK G V++++L+DF Sbjct: 587 RNARGQHVANLLAFQPDERIASVIQIPNYEVAP---YLILGTKKGLVKKSRLADFDSPRS 643 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G I + L DE++ + E+D+LL + GQ +RF + +R GR + GV G+ Sbjct: 644 GGLIGINLREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVLRPM-GRATSGVLGMR 702 Query: 729 LAKGDQVISMAIV 741 +G +++S+ ++ Sbjct: 703 FNEGAELLSINVI 715 >gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92] gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054] gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17] gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17] gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92] gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054] gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17] gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92] gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054] Length = 838 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L K +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--V 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916] gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916] Length = 878 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/893 (39%), Positives = 529/893 (59%), Gaps = 72/893 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RL+ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLLNGSAGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE+++G +A+I+NP+++ + L+ II GPDFPTG ILGR GI+ Y TGRGS+ Sbjct: 194 IPPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAGIRETYLTGRGSVT 253 Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ I+D+RDESDR Sbjct: 254 MRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILLTLRRMLQVFIDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + RRT+YLL KA +R H+L+GL +A+ LD ++ +IR + + TAR++L +R Sbjct: 374 VETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQERHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+++Q AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LTDIQADAILQMQLRRLTALEADKIRLEHEDLVAKIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL R R+ GII++EL ++D RRT I+ +ED D I E VV ++ Sbjct: 468 DYKDILGRRERVFGIIQEELTQLRDRYPIERRTEILNIAAGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLS 663 +P S A+G ++ +L + + E ITT++ E D+S ++ T G ++R +LS Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITTLLAVSEFSDDSD-----LLMLTSGGFIKRTRLS 642 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721 F I +G IA+ L+ D + V + +L+ T+ G + F +S +R GR + Sbjct: 643 AFSNIRSNGLIAINLEEGDALTWVRQAVPGDSVLIGTRAGMTIHFRLSDEELRPL-GRTA 701 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVR ++L GD ++SM ++ AD ++ + + ++ Sbjct: 702 RGVRSMNLRDGDALVSMDVLPVELAD---------------KVAQSSDDAADDDEGSAAS 746 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 EG ++L S G GKR FR+ R+G G+R N+ L Sbjct: 747 EG--------------PWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFR--NQGDEL 790 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VA+ + ++++LVS+KG ++R + I SRA GV + K + ++ V Sbjct: 791 VALRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDSLLKV 843 Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 6/106 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596 +V + S LG KRVP++ +R Q+R G G G+ R++ D + L ++ +L S G Sbjct: 752 LVASASGLG--KRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVLGAGEELLLVSEKG 809 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642 + + +P Q+R + + L++G+ + ++ P S Sbjct: 810 VIVRTSADAIP---QQSRAATGVRLQKLDKGDSLLKVVLVPPQAES 852 Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 6/111 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ ++E G+ KR +F ++R +G +A S+ E A+ ND+D Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 ++L SD+G +P + SR KG V + ++E + ++ + E Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITTLLAVSE 620 >gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099] gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099] Length = 846 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 358/887 (40%), Positives = 509/887 (57%), Gaps = 90/887 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV + Sbjct: 12 EARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSH 71 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K + I GE MG YHPHG++AIYD L RMAQD+S+R L++GQGNFGS+DGDP AA RYT Sbjct: 72 RKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYT 131 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ + LL+D+ KDTVDF NYD QEP VL + +PN+LVNG GIAVGM+TNIP Sbjct: 132 EARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIP 191 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEV+D + +ID+PD ++ LME ++GPDFPTGA I+GR I +AY TGRG I +R Sbjct: 192 PHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +E+ RE+IV+TE+PYQ NKA ++E+IAE V E I I+DLRDESDR G R+V Sbjct: 252 AEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIV 311 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E KRGA+ +V+ N+L L+ F V +AL +P+ +L L+ ++A R EVV R Sbjct: 312 VECKRGANVEVVKNKLLE-NHLEKTFGVINLALVDGQPQVLSLKETLEEYIAHRREVVRR 370 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L +A DRAH+L G AV N ++VV +IR S + A+ L Q +++ Sbjct: 371 RSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAAL-QEAYD-------- 421 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 S Q I+ ++L LT + +I +E + EI+ IL Sbjct: 422 -----------------FSAEQATHIVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSIL 464 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S LL +IK EL +KDE D RRT I+E + ED I E++ V ++ YVKR+ Sbjct: 465 ESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFVVMTEDDYVKRM 524 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P+S + Q RGGKG G ++++D V +F +TH +L F++ G VY+ K + +P Sbjct: 525 PISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGR 584 Query: 612 QARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ARGK+ +NIL L+ GE IT I+ F +DE +V AT+HG V+R S+F I Sbjct: 585 TARGKSAVNILDLDPGEDITAIVDTDAFGDDE------FVTMATRHGYVKRTAGSEFDNI 638 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA L DE++ VE D+++ ++ G +RF +R GRN+ GV GI Sbjct: 639 RSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAM-GRNARGVNGID 697 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D V + D Sbjct: 698 LQGDDAVAGLVATDEGD------------------------------------------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 EQ +LTV++ G+GKRT ++R +R GKG+ D+ G + V+ Sbjct: 715 --------EQDLLTVTQNGYGKRTPLSEYRTQSRYGKGL--IDIKTGERNGPVTTAKAVS 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +DQ++++S++G ++R V+EI R T GV++ + V SV+ Sbjct: 765 ADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVD 811 >gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] Length = 907 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 345/894 (38%), Positives = 518/894 (57%), Gaps = 95/894 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KCAR+ GEVMG Sbjct: 62 EMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYSKCARVVGEVMG 121 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ A ++ Sbjct: 122 KYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRMAPLAMEMV 181 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ EV +G Sbjct: 182 RDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPHNMREVAEGVH 241 Query: 204 AVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +D+P+ LD L+ II+GPDFPTGA ILG GI+ AY TGRG I +R V + E+ Sbjct: 242 WALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLITMRAVVNTEEI 301 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGA 318 G R +VVTE+PYQVN ++ I E VR+ +I IAD+RDE S R G R+V+ LKR A Sbjct: 302 KG-RMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSGRTGQRLVLVLKRDA 360 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 V+LN LY+++ LQ F NM+AL P +L ++ ++ + +VV RRT YL Sbjct: 361 VPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQIDVVARRTAYLKR 420 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 +A +R H+L GL A+ ++EV+++IR S E AR +LM+ +D Sbjct: 421 EAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLME----------FLD------ 464 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 + +VQ AIL ++L RL + I +E N L +I + DIL+ R Sbjct: 465 ----------IDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQR 514 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR YRA Sbjct: 515 RIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIPEENVVVTVTHSGFIKRTKADEYRA 574 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS ++G+ + Sbjct: 575 QHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHV 634 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 N+L E I T++ P E + Y+V AT+ G V++ L+++ + G IA++L Sbjct: 635 ANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRSGKVKKTALAEYDSPRQGGLIAVRL 691 Query: 679 ------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAK 731 ++ DE++ C ++DI+L ++ G ++F + ++ GR + GV+G+ Sbjct: 692 MTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPMGRQTAGVQGMKFRD 751 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD++++M +V D+D D Sbjct: 752 GDELLAMDVVW-GDSDKD------------------------------------------ 768 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L V+++GF KR++ ++R+ R+G G++A +++ G+LV V+++D Sbjct: 769 --------LLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEGR--GSLVGALIVSEDD 818 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 Q++ + G +IR V E++ R T+GV + K++ ++S+ E + D+ Sbjct: 819 QVMAIMKSGKVIRSDVAEVKRTGRNTQGVTLAKPDKNDEIISIALNAEKDDADD 872 >gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str. 56601] gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str. 56601] gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans] gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 834 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 345/828 (41%), Positives = 520/828 (62%), Gaps = 51/828 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL M + ++ YVKCA Sbjct: 32 VIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCA 91 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEV+G YHPHG+A++Y+AL RM Q++SLR+ LI+GQGNFGS+DGD PAA RYTE RL Sbjct: 92 KIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARL 151 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A LL D+ K+TV F PNYD + ++P VL A +PN+LVNG GIAVGMATNIP HNL Sbjct: 152 EKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNL 211 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +D +AVI NP+I + +++II GPDFPT +I+G G+ +AY+TG+GSI IR Sbjct: 212 RETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSKVE 271 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ RE IVVTEIPYQVNK +LEKI +LV EK+I I+++ D SDR+G RV I +K Sbjct: 272 IEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHIK 331 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A VILNQLY+ T LQ + + M+A+ KP+ F + IL A+ A R EV+VRRT++ Sbjct: 332 KDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVRRTQF 391 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA RAH+L GL IA+ N+++V+++IR S NP A+++LM R Sbjct: 392 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIR--------------- 436 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSEVQ+ AILE+RL RLT L I +EL + I + DIL+ S Sbjct: 437 -----------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKPS 485 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ I+ EL V D+ R+T I ++ ED I E++V+ +++ ++KR+P Sbjct: 486 RVNEIVCTELQEVGDKYGNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLP 545 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + ++ Q+RGGKG G+ + +D + + TH +++FFS++G VY K + LPI S + Sbjct: 546 IDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKE 605 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGK+L I++L + E I+++ F ++ + L V T+ G ++R +L +F + +SG Sbjct: 606 ARGKSLKAIINLREDEYISSVFTFRGEDMDKDLLLV---TRKGFIKRIQLKEFGNVKKSG 662 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ VE+ T ++++++ +K G +R + IR GR + GV G+ LA+ Sbjct: 663 IIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAED 721 Query: 733 DQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV-EGN 784 D ++ ++ I + ++ Y +R+ + + +A+ R G + KN SV G+ Sbjct: 722 DAIVGLSKYKEGEDIFVVSEEGYGKRLGF-EEFAAKGRGGKGMAYLKITEKNGFSVGTGS 780 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + E I+ ++++G R +++D R+ G+R D+ Sbjct: 781 VG---------SEDEIILITQQGMTIRINAFDISKLGRTAVGVRIVDL 819 Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 102/225 (45%), Gaps = 18/225 (8%) Query: 685 LSVETCTQENDILLTTKLGQCV-RFPISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVL 742 + E + +I++ Q + R PI + R G++G+S + D + I A + Sbjct: 520 FNAEDLIADEEIVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMT 578 Query: 743 HADADYDERICYMKHMSAQRRLISGDT------EEITSLKNDSSVEGNISEERCQELKLK 796 H + + I + M A I+ + I +L+ D + ++ R +++ Sbjct: 579 HDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYI-SSVFTFRGEDM--- 634 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++ +L V+ KGF KR +F N GI A + + +E L+ V + D D++++ Sbjct: 635 DKDLLLVTRKGFIKRIQLKEF--GNVKKSGIIAIGLREGDE---LIKVESMTDKDEVMIF 689 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 S KG +R+ N IR R GV A+D+ +V + + +E E Sbjct: 690 SKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGE 734 Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 32/213 (15%) Query: 536 EDM---VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV---MRDEDFVTDLFIVSTHTSV 589 EDM ++ V+ G++KR+ L + G +SG++ +R+ D + + ++ V Sbjct: 632 EDMDKDLLLVTRKGFIKRIQLKEF-----GNVKKSGIIAIGLREGDELIKVESMTDKDEV 686 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649 + FS G + I Q R + + + L + + I + + E E +++VV Sbjct: 687 MIFSKKGLALR---IEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGE----DIFVV 739 Query: 650 FATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCT--QENDILLTTKLGQC 705 ++ G +R +F R GK +K+ ++ SV T + E++I+L T+ G Sbjct: 740 --SEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKNG-FSVGTGSVGSEDEIILITQQGMT 796 Query: 706 VR---FPISAIRVFAGRNSVGVRGISLAKGDQV 735 +R F IS + GR +VGVR + L D+V Sbjct: 797 IRINAFDISKL----GRTAVGVRIVDLKDNDKV 825 >gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435] gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207] gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475] gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435] gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207] Length = 838 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY T RGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97] gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING)) (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE) [Mycobacterium bovis AF2122/97] Length = 838 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+ F NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTAF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333] gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333] Length = 885 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/905 (39%), Positives = 517/905 (57%), Gaps = 100/905 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G + + KCA Sbjct: 32 VEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSKCA 91 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+ AIYDAL R+ Q WS+R L+ GQGNFGS D AA RYTEC++ Sbjct: 92 RVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTECKM 151 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF NYDG QEP++L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 152 APLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPHNL 211 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +++PD L AL+ I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 212 REVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHRGIEDAYRTGRGSITMR 271 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+PYQVN + KI E+VRE RI IADLRDE S R G R+ Sbjct: 272 AVVEVEEIQG-RQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAGQRL 330 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P +L ++ + + +V+V Sbjct: 331 VIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSLDAFVRHWTMHQIDVIV 390 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL + R H+L GL A+ LDEV+ +IR SP+ + AR LM+ Sbjct: 391 RRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLME----------- 439 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + EVQ AIL+++L RL L + I +E ++ I + DI Sbjct: 440 ---------------LLEIDEVQATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDI 484 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL ++ + RRT I+ +M ED I ED+VVT++ GY KR Sbjct: 485 LASEERQRSIVRSELGAIVERYGDERRTTILPFDGEMSVEDLIPEEDVVVTITRGGYAKR 544 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQRRGGKG G +R++D V F+ +TH +LFF++LG VY+ K + LP G Sbjct: 545 TRTDNYRAQRRGGKGVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKGYELPEGG 604 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ GE+I ++ + D++ Y+V ATK G V++ +L+++ Sbjct: 605 RDAKGQHVANLLAFQPGEKIAQVLALRDYDQAD----YLVLATKRGLVKKTRLAEYDSSR 660 Query: 670 RSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722 G IA+ L + DE++S E+D+LL ++ GQ +RF + A+R A R + Sbjct: 661 TGGVIAINLRTDDGGAVDEVVSARIVGAEDDLLLVSRKGQSIRFTATDEALRPMA-RATS 719 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ D++++M +V DAD Sbjct: 720 GVTGMKFRADDELLAMDVV-ETDAD----------------------------------- 743 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 + V+E GF KRT+ ++R+ R G GI+ ++ + G LV Sbjct: 744 -----------------LFVVTEGGFAKRTALGEYRVQGRGGLGIKVANL--VEARGDLV 784 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V+ +D+++++ ++G ++R V+E+ R T+GV +R++++ E + Sbjct: 785 GALVVDSDDEVLVIMERGKIVRSAVDEVTRTGRNTQGVTFAKPDAGDRIIAIALGEERAV 844 Query: 903 VDEAE 907 D E Sbjct: 845 ADAGE 849 >gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 854 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 354/849 (41%), Positives = 522/849 (61%), Gaps = 94/849 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V + EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ + ++ K Sbjct: 91 GIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHRKS 150 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R L++G GNFGS+DGD AA RYTE R Sbjct: 151 ARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTEAR 210 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L+ + KDTVDF NYD S +EP VL +R+PN+LV+GG GIAVGMAT+IP HN Sbjct: 211 MSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHN 270 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE +D +A+ +NP+ID+ LME + GPDFPTGA+ILG GIK+AY TG+GSI IR ++ Sbjct: 271 LGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIPIRSIA 330 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ S + +I+VTEIPY+V K A++EKIAELV++K+I IADLRDES R+G R+VI++ Sbjct: 331 KIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIVIDV 390 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ + V+LN+LYR T+LQ ++VN VAL +P+ L L+ ++ +EEVV RR K Sbjct: 391 KKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVVTRRLK 450 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA+DR H+L GL IAV N+DEV+ II+ S A+ L +R +N Sbjct: 451 FDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR-FN----------- 498 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 L+E QT+AI+++RL RLTGL +++ E+ L EI+ IL++ Sbjct: 499 --------------LTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANH 544 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S L+ +I +EL +K++ + RRT+I ++G + DED I + D+V+T S G+VKR+ Sbjct: 545 SELIKLIVKELTEIKEKYNDKRRTQINYEIQGTIT--DEDLIPQRDIVITTSAKGFVKRM 602 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L Y+ QRRGG G + D+D + + +THT +L FS+ VY+ + +P S Sbjct: 603 DLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPELSR 662 Query: 612 QARGKALINI---LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 Q++G A INI L + +GERI +++P ++ + Y+ ATK+G +++ +L+++ +I Sbjct: 663 QSKGVAFINIIPSLRVKEGERIVSMLPV---DTYDEDHYLFTATKNGIIKKTRLTEYERI 719 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N +GK A L DE++ T E+ ILL + V+F R + R + GV+GI+ Sbjct: 720 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 778 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L V S + +S EG Sbjct: 779 LDSHQTVSSTS---------------------------------------TSQEG----- 794 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ILT+ +KGFGK T FR+ R GKG++ + SK+ G +V VN Sbjct: 795 ---------ELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGIN-SKL--AGDIVFARFVN 842 Query: 849 DNDQIILVS 857 D+++L+ Sbjct: 843 PQDELLLLQ 851 >gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162] Length = 837 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/903 (39%), Positives = 517/903 (57%), Gaps = 96/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EMQ SY+ YA++VI+GRA+P++RDG+KPV RRIL+ G ++ YVK A Sbjct: 16 IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYASYDAGYRPDRSYVKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + E MG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS DP AA RYTE RL Sbjct: 76 KPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L + ++TVDF PNYDG QEP VL AR PN+L+NG GGIAVGMATNIP HNL Sbjct: 136 TPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++N D D L+A ME ++GPDFPT +I+G GIK+AY+TGRGSI +R Sbjct: 196 REIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGGQGIKDAYSTGRGSIRMR 255 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV +E+ S ++V+TE+PYQVN ++ IAE VR+ +I I+ + D+ SDR G R+ Sbjct: 256 GVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGISKIEDQSSDRVGMRI 315 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +++ +VA + +V+V Sbjct: 316 VVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVAHQLDVIV 375 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+LL KA +RAH+L GL A+ LDEV+ +IR S E AR LM+ L Sbjct: 376 RRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIARTGLME----------L 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL+++L +L L R I +EL + EI + DI Sbjct: 426 LD----------------VDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDI 469 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R I++ EL + ++ RRT+I+ D+ DED I RED+VVT++ GY KR Sbjct: 470 LDKPERQRAIVRDELGEIVEKFGDDRRTKIIAADGDVTDEDLIAREDVVVTITETGYAKR 529 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 530 TKTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQS 589 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ ERI ++ + + Y+V ATK+G V++++L DF NR Sbjct: 590 RTARGQHVANLLAFQPEERIAQVIQI---KGYDDAPYLVLATKNGLVKKSRLEDF-DSNR 645 Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 SG I A+ L DE++ + E+D+LL +K Q +RF + A+R GR + GV+G+ Sbjct: 646 SGGIVAINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPM-GRATSGVQGM 704 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 DQ++++ +V Sbjct: 705 RFNGDDQLLALNVV---------------------------------------------- 718 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 QE + ++L + G+ KRT+ D+ + R GKG+ + G LV V Sbjct: 719 ---QE----DTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFDP--KRGDLVGALIV 769 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES--EIVDE 905 ND ++ ++ G +IR ++R A R TKGV + + + ++++ R + E DE Sbjct: 770 NDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLAIARNADETDETSDE 829 Query: 906 AES 908 E Sbjct: 830 TEQ 832 >gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] Length = 838 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 346/898 (38%), Positives = 548/898 (61%), Gaps = 86/898 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I E++ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++GV + Y K A Sbjct: 18 IKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNELGVYSHSSYKKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGK+HPHG+++IY+A+ RMAQD++ R L++G GN GS+DGD AA RYTE ++ Sbjct: 78 RIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDGDNAAAMRYTEVKM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + LL ++ ++TVDF NYDGS +EPV L + +PN+LVNG GIAVGMATNIP+HNL Sbjct: 138 SKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGIAVGMATNIPSHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D + IDN +ID + LM+ I+GPDFPTG ILG +G+K AY TGRG I +R + Sbjct: 198 SEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEILGISGLKEAYETGRGRIFVRSKTE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL 314 I + ++ I++ EIPYQ+ K +++EKIA LV+EK I I DLRDES+ +G R++IEL Sbjct: 258 IIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRDESNNSRGMRIIIEL 317 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ +ILN LY++T LQ+ F NM+AL P+ +L +L+ F FR +V+ R+ K Sbjct: 318 RKDVEPKIILNNLYKHTQLQTSFCFNMIALVNGVPKIVSLKNMLEEFFLFRIDVINRQKK 377 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + LNKA+ + H++ LAI + ++++V++II+ S + + A++ +M ++N Sbjct: 378 FELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIMI-NYN----------- 425 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 E+Q++AILE+ L ++T L + E L ++I EC +I++S+ Sbjct: 426 --------------FDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQ 471 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++ I+K+ELL +K++ R++ I E L +E+E I +E +++TV++ GY+KR+ L Sbjct: 472 TKKEKILKKELLKIKNQFQDKRKSIISNEQYLTVENESLINKETILITVTNKGYIKRLNL 531 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+ Q RGGKG SG+ M++ DF+ + I STH LFF++ G +Y+ K + +P+GS + Sbjct: 532 DTYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYS 591 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G L+N+L L + E +T++ + + N Y+V TK G ++RN L DF + R+GK Sbjct: 592 KGIPLVNLLPLEKNEFLTSLTSVKDFKEEKN--YLVLVTKKGLIKRNSLKDFENVRRNGK 649 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA L + DE+L V T + DI+L G+ +RF IR GR S GVRGI + + Sbjct: 650 IAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQ-TGRKSSGVRGIKIKTEE 708 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I M +V D+E Sbjct: 709 EIIGMTVV--------------------------DSE----------------------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +Q IL ++EKG+GK T + ++R R GKG + ++ N G LV + + N+++ Sbjct: 720 ---KQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRN--GKLVRLLTIYRNEEL 774 Query: 854 ILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 I+ SD G ++R+ +I + S+ T+G ++ S + ++V SV I+++ I E + E Sbjct: 775 IIFSDHGKVVRIDTKQIPLTKSKVTQGNILISLEESDKVSSVALIKKTLIKKEESNDE 832 >gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] Length = 914 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 367/883 (41%), Positives = 521/883 (59%), Gaps = 100/883 (11%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I + + + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +GV + Y Sbjct: 7 ENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPY 66 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+ ++GQGNFGS+DGD AA RYT Sbjct: 67 KKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAAMRYT 126 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ A LL DL K+TVDF PNYD S EP VL AR PN+L+NG GIAVGMATNIP Sbjct: 127 EARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 186 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 H+L E+V G + +++N + L+ +M I+GPDFPTG +I G+ GI AY TGRG + IR Sbjct: 187 PHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGRGRVKIR 246 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 +HIEK + ++ IV+ E+PYQ NKA ++E+IA+LV+EK+I I+++RDESDR G RVV Sbjct: 247 AKTHIEKKAS-KDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDGIRVV 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A ++++LN L++ T++++ F V M+A++G +P+ FTLI +LK F+ R+ V++R Sbjct: 306 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIR 365 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT + L KAR RAH+L GL IA+ N+DEV+ +IR S + AR LM R Sbjct: 366 RTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----------- 414 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q+ AIL++RL+RLTGL R+ I EL + EIK IL Sbjct: 415 ---------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAIL 459 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 S + GIIK ELL +KD+ PR T IV+ D++ ED I E+MVVT++H GY+KRV Sbjct: 460 KSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRV 519 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P Y Q+RGGKGR V D+DF+ F +TH +++F + G +Y KV+++P GS Sbjct: 520 PSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSR 579 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GKA++N++ L E+I I+P + + S + +VF T++G V+R LS+F I Sbjct: 580 TAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKS---LVFFTRNGIVKRTNLSEFKNIRSL 636 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ LD E+D L+T + P SA +G +L+ Sbjct: 637 GIRAISLD-------------EDDTLVTALIA-----PNSA------EEMQNYKGGALSG 672 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN---ISEE 788 D L G+ EEI +EG+ IS+E Sbjct: 673 DD------------------------------LDGGEAEEILEQTEQDILEGSEDEISDE 702 Query: 789 RCQE--------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 Q+ E + ++KG + + R R +G++ K E G Sbjct: 703 ISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGI---KFKEKGD 759 Query: 841 LV--AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 V A F ++D +I+ VS KG R +E R+ +R KGV+ Sbjct: 760 EVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVI 802 Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 57/206 (27%) Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADY 748 T EN + + TK G C++F ++ IR GR + GV+GI KGD+VI A Sbjct: 716 STNENMLFIATKKGMCLKFNLNKIRQM-GRIARGVKGIKFKEKGDEVIGAA--------- 765 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 I D +EI L+VS+KG Sbjct: 766 ---------------FILSDMQEI----------------------------LSVSQKGI 782 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868 GKRT++ ++R++NR GKG+ ++ N G L+ V V++ ++ ++ G +IRV + Sbjct: 783 GKRTTASEYRLTNRGGKGVICMKLT--NRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQ 840 Query: 869 EIRIASRATKGVVIFSTAKDERVVSV 894 IR A R T GV++ + D+ VVS+ Sbjct: 841 SIRKAGRNTSGVIVVNVEGDD-VVSI 865 Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 6/101 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T++ +G+ KR S + R GKG A + I + F N +D ++ + Sbjct: 504 ENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESF---FTSNTHDTLMFI 560 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 +D+G L + V +I SR KG V + DE+++++ Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAI 601 >gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3] gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4] Length = 891 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S+++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQRRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S D+ V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115] gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A) (DNA topoisomerase II) [Deinococcus deserti VCD115] Length = 811 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 360/892 (40%), Positives = 531/892 (59%), Gaps = 90/892 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+ G+ N+K+ K Sbjct: 3 GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+++IYDA+ R+AQ W++R ++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A L+ DL K+TVD +PNYD + +EP VL A PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID+P++ LD LME + GPDFPTG I +TGI+ AYATG + +RG + Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRIT-KTGIREAYATGHSGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313 IE+ +G R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR+ R+V+E Sbjct: 242 RIEEKNG-RNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA ++LNQLY+YT LQ+ ++V +++ G +P L+ ++ F+ R +VV RRT Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQTTYTVINLSIVGGEPRVLPLLNTMQYFLDHRADVVTRRT 360 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L KA +RAHVL GL A+ ++DEV+ +IR S AR LM R Sbjct: 361 RYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVR------------- 407 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 L+E+Q++AIL++RL RL GL R+ ++ E + L I+ IL Sbjct: 408 -------------FGLTEIQSQAILDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGD 454 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L IK+E+ +++D RR+ I E D+ ED I EDMV+T++ GY+KR L Sbjct: 455 EKLLWREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKL 514 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP A Sbjct: 515 DAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574 Query: 614 RGKALINIL-SLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 +G + N+L SL + E I +++ DE +FAT+ G V++ ++++ I + Sbjct: 575 KGTHIRNLLPSLREDENIASVLSVGGFDEPGC----FIFATRKGVVKKTLITEYGNITSA 630 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+ L DE++ V + ++L T+ G+ +RF +R GR + GV GI L + Sbjct: 631 GLIAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRA-TGRATQGVIGIRLRE 689 Query: 732 G--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G D V+SMA+V D Sbjct: 690 GEDDAVVSMALVPGGD-------------------------------------------E 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 EL L VSE G GKRT D+ R G G+ DV++ + G LV + V Sbjct: 707 ASEL-------LAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTE--KTGKLVTLARVAG 757 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 N++++++++KGT+IR V E+R+ R +GV + + A+ + V+S IR + Sbjct: 758 NEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRRED 809 >gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836] gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836] Length = 907 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/917 (38%), Positives = 517/917 (56%), Gaps = 91/917 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE IS + I + + EMQ SYL YA+ VI+GRA+P++RDGLKPVHRRIL+ M Sbjct: 1 MTETPISPGHDR---IEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + KC+RI G+VMG+YHPHG++AIYD L R+AQ W +R +I+ QGNFGS Sbjct: 58 YDGGYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTECRL A ++ D+ ++TVDFRPNYDG QEPV+L +R+PN+LVNG Sbjct: 118 GNDPAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSA 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV ++NPD L A ME I+GPDFP GA+I+G G Sbjct: 178 GIAVGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIVGYKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +R V IE+ + R +VV+E+PY VN + +KIAELV ++ I Sbjct: 238 IDDAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGI 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RD+ S R G R+VI LKR A V+LN LY++T LQ F NM+AL P +L Sbjct: 298 ADIRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDGVPRTLSLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 + ++ + EV+ RRT+Y L +A AHV G A+ LDEV+ +IR SP+ + AR Sbjct: 358 LFITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEAR- 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + LI L+D + E+Q +AIL+++L RL L R I + Sbjct: 417 ------------QGLISLLD-------------IDEIQAQAILDMQLRRLAALERQKIID 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 LN L I + DIL+ R I++ EL + D+ RRT I+ D+ +D + Sbjct: 452 RLNELEAVIADLEDILADPVRQRHIVRDELAEIVDKFGDDRRTTIIAADGDLSVQDLVPD 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR Q RGGKG G MR ED + F + H +LFF++ Sbjct: 512 EDVVVTITRGGYAKRTKTDLYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTK 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKH 654 G VY+ KVW+LP + A+G + +LS E I ++ + D++ Y+V ATK Sbjct: 572 GRVYRAKVWQLPESARDAKGSHVAGLLSFQPDEEIAQVLTLRDYDQAD----YLVLATKK 627 Query: 655 GNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G V++ L D+ +SG IA+ ++ DE++ + + E+D+LL +K GQ +RF + Sbjct: 628 GLVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVSKKGQSIRFTANDE 687 Query: 714 RVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 ++ GR + GV G+ GD+++SM++ I +EE Sbjct: 688 QLRPMGRATSGVTGMKFRAGDELLSMSV------------------------IRAGSEED 723 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T QF+ TV++ G+ KR+ ++R R G GI+A + Sbjct: 724 T------------------------QFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKL 759 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + +E G+LV V D+DQ++ + G ++R V+ + + R T GV + VV Sbjct: 760 N--DERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSVPVKGRDTMGVRFAGVGASDAVV 817 Query: 893 SVERIRESEIVDEAEST 909 ++ R + + DE ++ Sbjct: 818 AIARNTDLTVADELDAA 834 >gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171] gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] Length = 910 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 350/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M G ++ Y KCA Sbjct: 41 VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 100 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNFGS DPPAA RYTECR+ Sbjct: 101 RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 160 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 161 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 220 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +G +D+P+ L+AL+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 221 RELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 281 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 339 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 399 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L GL A+ +DEV+R+IR S E AR +LM+ Sbjct: 400 RRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME----------F 449 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L RL + R I +E L +I + DI Sbjct: 450 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 493 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 494 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 553 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 554 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 614 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 670 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C +DI+L +K G ++F ++ GR + Sbjct: 671 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 730 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ D++++M +V Sbjct: 731 GVQGMKFRGDDELLAMDVV----------------------------------------- 749 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E+ Q+L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 750 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 797 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+++DQ++ + G +IR V E++ R T+GV + K + ++S+ R E+ Sbjct: 798 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 855 >gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium pseudogenitalium ATCC 33035] gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium pseudogenitalium ATCC 33035] Length = 850 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 349/899 (38%), Positives = 528/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTEC+L Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DNPD D L+A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ SG R+ IV+TE+P+QVN ++ IAE V +I I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVEHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN+A RAH+L GL A+ LDEV+ +IR SP + AR L K+L Sbjct: 371 RRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D +Q AIL ++L +L L R I +EL + EI + DI Sbjct: 421 LDVDD----------------IQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + D+ RRT I+ D+ DED I RE++VVT++ GY KR Sbjct: 465 LAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIARENVVVTITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP G Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V AT+ G V++++L+D+ Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ++SM++V +D + SG + T++ Sbjct: 702 RGDDQLLSMSVV------HDGEFLLVA--------TSGGYGKRTAI-------------- 733 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E++ T G G T F+ + + GK L+ V++ Sbjct: 734 -------EEYT-TQGRGGLGVMT----FKYTPKRGK---------------LIGAISVDE 766 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I ++ G +IR V++IR +SRAT GV + + D +++++R E + ++A++ Sbjct: 767 DDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLGDDVELLAIDRNVEEDGEEDAQA 825 >gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] Length = 850 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 323/723 (44%), Positives = 476/723 (65%), Gaps = 42/723 (5%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + + +K + K A G+V+G Sbjct: 27 EMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDNLTADKPFKKSATCVGDVLG 86 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 +YHPHG+A++YDAL R+AQD+S+R +L++G GNFGS+DGDPPAA RYTE RL K + +L Sbjct: 87 RYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSIDGDPPAAYRYTEARLSKISDEML 146 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 D+ KDTVD+ PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL EV++ + Sbjct: 147 RDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVINATI 206 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 V+DNP+ +L LME I+GPDFPT +I+GR+GI+ AYATGRG + +R + E+ DR Sbjct: 207 CVLDNPEAELCDLMEHIKGPDFPTKGIIMGRSGIRAAYATGRGRLCVRARTEFEEFGKDR 266 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 +I+VTEIPYQVNK +++ +A+ V +KR+ I+D+RDESDR G R+VIELKR A+ V+ Sbjct: 267 TRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGISDIRDESDRNGMRIVIELKRDANPQVV 326 Query: 324 LNQLYRYTSLQSLFSVNMVAL---NG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 LN+L+ T LQ+ F++NM+AL NG +P +L IL ++A++E+V++RRTKY L K Sbjct: 327 LNRLFAQTQLQTTFAINMLALVEVNGKLQPRILSLRHILDEYIAYQEQVIIRRTKYDLKK 386 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A++RAH+L GL IA N+DEV+ IIR + A+ +LM+R Sbjct: 387 AQERAHLLEGLLIAQDNIDEVIHIIR--SRYDDAKEKLMER------------------- 425 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 L +VQ +AIL++RL L GL R+ + NE L I +L S L G Sbjct: 426 -------FSLDDVQAQAILDMRLKALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRG 478 Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 ++K EL++++D+ R T I + +++ ED I E+ V T++ GY+KR+P S Y+ Q Sbjct: 479 VLKDELIAIRDKYGDERVTEIQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQ 538 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGGKG + + ++ED+V +F STH +LFF++ G V+++K +++P A+G L+ Sbjct: 539 RRGGKGITAMATKEEDYVDTVFTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLV 598 Query: 620 NILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 NIL + GE++T ++ FPED Y+ T++G V+R +LS ++G + Sbjct: 599 NILPVESGEKVTAMIHLREFPEDR------YLAMVTRNGTVKRIQLSAINTARKAGIRCI 652 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 LD DE+++V + IL+ T G + F + +R GR++ GVRGI L +GD VI Sbjct: 653 TLDEGDELIAVRETDGDQAILIATHDGMSICFKETDVRCM-GRDACGVRGIKLREGDYVI 711 Query: 737 SMA 739 A Sbjct: 712 GAA 714 Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 66/327 (20%) Query: 603 VWRLPIGS--PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 + RLP + Q RG I ++ + + + T+ ++ + +++F T G V R Sbjct: 527 IKRLPASTYKTQRRGGKGITAMATKEEDYVDTVF------TASTHDFILFFTNKGRVHRK 580 Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVET------------CTQENDILLTTKLGQCVRF 708 K QI +G++A K + IL VE+ ++ + + T+ G R Sbjct: 581 K---GYQIPEAGRMA-KGTNLVNILPVESGEKVTAMIHLREFPEDRYLAMVTRNGTVKRI 636 Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +SAI G+R I+L +GD++I++ + D D+ I H D Sbjct: 637 QLSAINTA---RKAGIRCITLDEGDELIAVR-----ETDGDQAILIATH----------D 678 Query: 769 TEEITSLKNDSSVEGNISEERC--QELKLKE-------------QFILTVSEKGFGKRTS 813 I + D G + C + +KL+E +L V+E G+GKRT Sbjct: 679 GMSICFKETDVRCMGR---DACGVRGIKLREGDYVIGAARAKAGHQVLMVTENGYGKRTD 735 Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 ++ S NR G G++ +V++ + G +V V V+D D I++++D G +IR+ V+ Sbjct: 736 MDEYIRSDGPQNRGGYGLKGYNVTE--KTGPVVGVKVVSDADDILVINDAGVIIRMAVSG 793 Query: 870 IRIASRATKGVVIFSTAKDERVVSVER 896 I RA +GV + + + +V+S R Sbjct: 794 ISTYGRAAQGVKLMNLDEGVKVISFAR 820 Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 6/103 (5%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 + T++ G+ KR + ++ R GKGI A + + + VF + +D I+ ++K Sbjct: 518 VFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVD---TVFTASTHDFILFFTNK 574 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 G + R +I A R KG V I E+V ++ +RE Sbjct: 575 GRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLRE 617 >gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2] Length = 891 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S+++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S D+ V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580] gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580] Length = 838 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 348/892 (39%), Positives = 524/892 (58%), Gaps = 101/892 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + + ++ KCA+I Sbjct: 15 ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RYTE ++ + Sbjct: 75 GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARL 134 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +++D+ KDTVDF PN+D S QEP VL ++P +L NG GIAVGMATN+P HNL E+ Sbjct: 135 AESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLREI 194 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 A IDNPDI +D L + I+GPDFPTG +I G+ GI+ A+ TGRG I++RG +IE Sbjct: 195 AQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKILVRGRFNIEV 254 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRG 317 +E I+ TE+PYQVN A++ KI EL REK I IA + DE SDR G R+VIELKRG Sbjct: 255 DKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIELKRG 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A A V+LNQL+ T+LQS F V +AL G +P+ TL ++ FVA R+EVV RR ++ L Sbjct: 315 AIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRVRFDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA +RAH+L L +A+ N+DEV++IIR S + +A+ LM+R Sbjct: 375 KKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER----------------- 417 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 +VQ +AI++++L RLT L +D+R EL L + I+ D+L+ ++ Sbjct: 418 ---------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKI 468 Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L +IKQE + ++ RRT IV + + ++ ED I +E MVV VS+LGY+KRVP++ Y Sbjct: 469 LALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAY 528 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + Q RGGKG + + ++DF+ +F STH ++F ++ G Y KV +P S +RG Sbjct: 529 KRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGS 588 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + ++L+++ E ITTI+ E S + Y++ AT G V++ + F G IA+ Sbjct: 589 HIKSLLAVSSDEEITTIVSLKEFSS---DTYLLMATAGGIVKKVQTDSFQNAKTRGIIAI 645 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 KLD D+++S T +++++L T+ GQ +R + IR GR S GV GI L+ GD++ Sbjct: 646 KLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIR-DQGRASHGVIGIRLSGGDELT 704 Query: 737 SM------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +++ ++ Y +R+ + S R G Sbjct: 705 GALRINNGKLLVMSENGYGKRVDF-SEFSPHGRGTGG----------------------- 740 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q + TV+EK E+ L+A V D+ Sbjct: 741 -------QKVYTVTEK----------------------------TGEVVGLLA---VADD 762 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESE 901 D+I+ ++ +G IRV V+ I + RA +GV I ++++ ++ + RE E Sbjct: 763 DEIVCITGQGKTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVAREDE 814 >gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana] gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor Length = 950 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 366/925 (39%), Positives = 532/925 (57%), Gaps = 101/925 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++S DE I + E SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G Sbjct: 93 VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DP Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209 Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIA Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY T Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329 Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG +V+RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RD Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I + + +A L Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 505 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S Y LSE Q AILE+ L RLT L R +E +SL Sbjct: 506 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 543 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540 +I + +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ Sbjct: 544 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 VS GYVKR+ + Q RG G+S +R +D ++D + H VLFFS G VY Sbjct: 604 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 + +++P S A G L+ ILS+++GER+T+I+P F ED Y++ T +G + Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F I +G IA++L+S DE+ V C+ ++ + + ++ G +R + Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 777 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 RN+ GV + L D++ SM I+ SL+ Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806 Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 D EE+ ++ L +Q ++L V E G+GKR FR S + G+ Sbjct: 807 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGY--- 856 Query: 834 KINEIGALVAVFPVN--------DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 K E L AVF V ++Q++LVS GT+ R+ V +I I SR +GV++ Sbjct: 857 KFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILM-- 914 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 R+ +I+ + ++ A+ E Sbjct: 915 ----RLDHAGKIQSASLISAADEEE 935 >gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] Length = 841 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 354/890 (39%), Positives = 518/890 (58%), Gaps = 94/890 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EHI+ EE+E I + ++ EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + Sbjct: 5 EHIV---EEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMYE 61 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 MG+ N + K AR+ G+V+GKYHPHG+A++YDAL R+AQD+SLR ++ QGNFGS+DG Sbjct: 62 MGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSIDG 121 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DPPAA RYTE ++ + +L D+ KDTVDF PNYD S QEP VL A +P +L NG GI Sbjct: 122 DPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSGI 181 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVGMATN+ HNL E+ D AVI+NPDIDL+ LM+ I+GPDFP+GA+I G+ GI +A++ Sbjct: 182 AVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIICGQQGIIDAFS 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG IV R IE+ +QI+ T+IPYQVNKA +++KI EL R + I+ +RDE Sbjct: 242 TGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDEL-RRNDLPAISAVRDE 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR+G R+V+ELK+G+ ++LN L+ T LQS F+VN +AL +P+ +L IL ++ Sbjct: 301 SDREGIRIVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNGRPQLLSLKEILVHYI 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 +RE+VV RRT+Y L KA +RAH+L+GL I + N+DEV+RII+ S + A E +Q+++ Sbjct: 361 NYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESED-NAAASEGLQKAF 419 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+++Q AI++++L RL+ L + I EL L + Sbjct: 420 G-------------------------LTKIQADAIIDMKLGRLSHLETEKILEELAELEV 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVT 541 +I D+L+ R ++LG++ QE + + R T I + + ED I E++VV Sbjct: 455 KIAYYKDLLADRRKILGVVAQETRELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVV 514 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S+ G++KRV YR+Q RGG G G + ++DFV L++ STH V+F SS G Y Sbjct: 515 ISNKGFIKRVVAEEYRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWI 574 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV +P GS ++G ++ ++ + GE I++I+ F E ++ Y+ TKHG ++ Sbjct: 575 KVHEIPEGSKVSKGSSIKQLIDITDGEEISSIINFTE---FHDDQYLFMVTKHGVTKKVG 631 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L F G A+ LD D ++ E T +D++ T G+ +R +R GR S Sbjct: 632 LPAFRNAKSRGVRALFLDEGDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAM-GRAS 690 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRG+ L D VI + LK D S Sbjct: 691 RGVRGMKLLGDDTVIGL------------------------------------LKVDDS- 713 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGA 840 + IL ++EKG GK+ + +F NR G+G + + +I E Sbjct: 714 ----------------RRILMITEKGQGKQVNFSNF---NRHGRGTQGQLIYRIKEKTSY 754 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG--VVIFSTAKD 888 LV VND + +++++ +G IR+ VN I R G VV KD Sbjct: 755 LVNALAVNDENDVVVITMQGQTIRIHVNLISTQGRNASGVRVVALKNPKD 804 >gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1] gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2] gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1] gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1] Length = 891 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/907 (39%), Positives = 518/907 (57%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S+++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S D+ V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)] Length = 846 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 339/881 (38%), Positives = 520/881 (59%), Gaps = 88/881 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G G+ +K Y K A Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G VMGKYHPH ++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD AA RYTE RL Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L ++ KDTVDF NYD S QEP+VL + +PN+L NG GIAVGMATNIP HNL Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G ++ N + ++ L E I+GPDFPT A ILG TGI + TGRGS+ +R S Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ + ++ IV+T+IPY VNKA ++ KIAELV+ ++I IADLRDES+R+G R+VIE K Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQLY+ T LQ+ FSV M+AL +P+ L L+ ++ + ++++R+T + Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ AH++ GL IA N+D+V+ I+ + + E A+ LM + Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYE------------- 424 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LS++Q +AIL++RL L+GL R++++ EL L IK+ +IL ++ Sbjct: 425 -------------LSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R + II +L + + RRT+I GL +++E I E +V+T S GY+KR+P+S Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ Q RGG G G+ ++D V L + STH+ +LFF++ G VY+ + ++P+GS ++ Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G IN++S+ + E++ +++ + +++ Y F+TK G V+R K S+F +I +GKI Sbjct: 592 GIPAINLISIEKDEKLMSLLSI----NDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733 A+KL D + V + +I + G VRF +R GR + GV G+ D Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +VI ++ SS EG++ Sbjct: 707 EVIGLS---------------------------------------SSHEGSL-------- 719 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V EKG GK T ++R++NR KG+ V+ + G ++ VN N+++ Sbjct: 720 ------LLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++S G ++RVP+ E+ R T GV + S + E + SV Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSV 812 Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/106 (22%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E ++T S KG+ KR +++ +R G G++ + + +++ +L+ +D ++ Sbjct: 513 ETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSD---LLFF 569 Query: 857 SDKGTLIRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRE 899 ++ G + R+ +++ + SR +KG+ + S KDE+++S+ I + Sbjct: 570 TNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSLLSIND 615 >gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] Length = 831 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 332/737 (45%), Positives = 467/737 (63%), Gaps = 37/737 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I V I EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M G ++ Y Sbjct: 8 EHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSGYRPDRGY 67 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 VKC+R+ G+VMG YHPHG+++IYD L R+AQ WS+R LI+GQGNFGS DP AA RYT Sbjct: 68 VKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDPAAAMRYT 127 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL A +L D+ +DTVDF NYDG QEP VL AR PN+LVNGGGGIAVGMATNIP Sbjct: 128 ESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAVGMATNIP 187 Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV DG V ++NP+ D L+AL+E I+GPDFPT +I+G I +AY TGRGS Sbjct: 188 PHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGTNAIADAYRTGRGS 247 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306 I +R V +E+ + R +VVTE+PYQVN ++E IA + RE ++ I+D+ DES+ R+ Sbjct: 248 IKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDIADESNSRR 307 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI LKR + V+LN LY++T LQ F VNM+AL P L +++ +V + Sbjct: 308 GMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALVEGVPRTLRLDQVIRHYVKHQV 367 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+VRRT++ L KA +RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 368 EVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDAR------------ 415 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LI+L++ + EVQ AILE++L RL L R I ++L + EI++ Sbjct: 416 -TGLIELLE-------------VDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIED 461 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL R II+ EL+++ D+ RRTRIV ++ ED I ED+VVT++ G Sbjct: 462 LKDILDKPERQRQIIRDELMAIVDKHGDDRRTRIVPHEGEVSMEDLIADEDVVVTLTRTG 521 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y KR +YRAQ+RGGKG G ++ +D V+ F+ STH +LFF++ G VY+ K + L Sbjct: 522 YAKRTRTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYEL 581 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + ARG+ + N+L+ E I +M + ++ Y+V AT++G V++++L+DF Sbjct: 582 PEANRTARGQHVANLLAFQPDEHIAQVMQIKDYTAAP---YLVLATRNGLVKKSRLTDFD 638 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 G I + L DE++ C+ ++D+LL + GQ +RF S A+R GR + GV Sbjct: 639 SNRSGGLIGVNLKDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEALRPM-GRATSGV 697 Query: 725 RGISLAKGDQVISMAIV 741 G+ +GD++++M +V Sbjct: 698 LGMRFNEGDELLAMGVV 714 >gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] Length = 808 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/892 (40%), Positives = 529/892 (59%), Gaps = 93/892 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ MM G+ N K+ K Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM KYHPHG+++IYDA+ R+ Q W++R ++ QGNFGS+DGDPPAA RYTE R Sbjct: 63 ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + + A LL DL K+T+ +PNYD + +EP VL A PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+ID P++ L +ME ++GPDFPTG I + GI++AY TG S+ +RG + Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI-SKQGIQDAYTTGHASLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 IE+ + +R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR + R+VIE Sbjct: 242 RIEEKN-NRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300 Query: 314 LKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 LKRGA ++LNQLY+YT LQS F+V N+ +NG +P LI ++ F+ R +VV RR Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNG-EPRVLPLIDTMRYFLDHRRDVVTRR 359 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y L KA +RAH+L GL A+ ++DEV+ +IR S AR LM R Sbjct: 360 TQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMAR------------ 407 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++RL RL GL R+ + +E + L I + IL Sbjct: 408 --------------FELSEPQAQAILDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILG 453 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L IK+E+ ++D RR+ I D+ ED I EDMV+T++ GY+KR Sbjct: 454 DEKLLWREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTT 513 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YRAQ RGG+G G +R+ED T +F+ STH +LFF+ G ++ EK++ LP + Sbjct: 514 LDAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARD 573 Query: 613 ARGKALINIL-SLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G + N+L SL E I ++ E+E S+ VFATK+G V+R ++D+ I Sbjct: 574 AKGSHIRNLLPSLRDDENIASVQSIRGFEEEGSF-----VFATKNGMVKRTLITDYGNIT 628 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ L DE++SV +DI+L T+ G+ +RF +R GR + GV GI L Sbjct: 629 SAGLIAINLQEDDELISVGIVKNGSDIVLATRGGKAMRFAADEVR-DTGRATQGVIGIRL 687 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 D+V+SMA L+ DTE SE Sbjct: 688 KGDDRVVSMA------------------------LVPADTE---------------SE-- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +SE G GKRT D+ R G+G+ DV++ + G LV + V+ Sbjct: 707 ----------LLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTE--KTGRLVTLARVDG 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +++++++ G +IR V E+R+ R +GV + + + +RV+S IR+ + Sbjct: 755 GEELMVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKED 806 >gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] Length = 888 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 350/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M G ++ Y KCA Sbjct: 19 VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNFGS DPPAA RYTECR+ Sbjct: 79 RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 139 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 198 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +G +D+P+ L+AL+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 199 RELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 258 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 259 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 317 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 318 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 377 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L GL A+ +DEV+R+IR S E AR +LM+ Sbjct: 378 RRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPKLME----------F 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L RL + R I +E L +I + DI Sbjct: 428 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 471 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 472 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 531 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 532 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 591 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 592 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 648 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C +DI+L +K G ++F ++ GR + Sbjct: 649 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 708 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ D++++M +V Sbjct: 709 GVQGMKFRGDDELLAMDVV----------------------------------------- 727 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E+ Q+L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 728 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 775 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+++DQ++ + G +IR V E++ R T+GV + K + ++S+ R E+ Sbjct: 776 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 833 >gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4] gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4] Length = 840 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 367/919 (39%), Positives = 529/919 (57%), Gaps = 96/919 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG G Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+ RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDA---PYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D+++S+ +V Y+ + SG + Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVVREG--------TYLLVAT------SGGYSKR 735 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T ++ D V+G G G T YD + R T V Sbjct: 736 TGME-DYPVQGR---------------------GGKGVLTIQYDKK---------RGTLV 764 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 GAL+ VND+D++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 765 ------GALI----VNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLL 814 Query: 893 SVERIRES--EIVDEAEST 909 ++ R + E D AES+ Sbjct: 815 AIARNADEPDETDDNAESS 833 >gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] Length = 910 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 349/898 (38%), Positives = 513/898 (57%), Gaps = 96/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + I EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI++ M G ++ Y KCA Sbjct: 41 VAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGGYRPDRGYSKCA 100 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R +VMG YHPHG+AAIYD+L RMAQ WS+R L++GQGNFGS DPPAA RYTECR+ Sbjct: 101 RPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDPPAAMRYTECRM 160 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+L NG GIAVGMATNIP HN+ Sbjct: 161 MPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAVGMATNIPPHNM 220 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +G +D+P+ L+AL+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 221 RELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 280 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 281 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADMRDETSGRTGQRL 339 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V + EV+ Sbjct: 340 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEVIE 399 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L GL A+ +DE++R+IR S E AR +LM+ Sbjct: 400 RRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPKLME----------F 449 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L RL + R I +E L +I + DI Sbjct: 450 LD----------------IDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDI 493 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + RRT+I+ +M ED I E++VVTV+H G++KR Sbjct: 494 LAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFIKR 553 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + LP GS Sbjct: 554 TKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGS 613 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L E I T++ P E + Y+V AT+ G V++ L+++ + Sbjct: 614 RDSKGQHVANLLQFGPDETIQTVLSIPNYEVAK---YLVLATRTGKVKKTALAEYDSPRQ 670 Query: 671 SGKIAMKL-------DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSV 722 G IA++L + DE++ C +DI+L +K G ++F ++ GR + Sbjct: 671 GGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMSLKFAADNDQLRPMGRQTA 730 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ D++++M +V Sbjct: 731 GVQGMKFRGDDELLAMDVV----------------------------------------- 749 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E+ Q+L L V+ +GF KRT+ ++R+ R+G G++A +++ G+LV Sbjct: 750 ---PEDSKQDL-------LVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEGR--GSLV 797 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 V+++DQ++ + G +IR V E++ R T+GV + K + ++S+ R E+ Sbjct: 798 GALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 855 >gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS] gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS] Length = 836 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/908 (39%), Positives = 523/908 (57%), Gaps = 94/908 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGS+ +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRIV ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPNERIAQVIQI---KSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++++L+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKSRLTDF-DSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D+++S+ +V DT + Sbjct: 691 LRPM-GRATSGVQGMRFNADDELLSLNVV------------------------RPDTYLL 725 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + + +I E Q G G T YD R Sbjct: 726 VATSGGYAKRTSIEEYTAQ------------GRGGKGILTIQYDRR-------------- 759 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + N +GAL+ V+D+ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 760 -RGNLVGALI----VDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLI 814 Query: 893 SVERIRES 900 ++ R E+ Sbjct: 815 AIARNAEA 822 Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 21/219 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-- 596 +V + G VK+ L+ + + R GG V +RD D + + S+ +L S+ G Sbjct: 624 LVLATRNGLVKKSRLTDFDSNRSGGI--VAVNLRDGDELVGAVLCSSEDDLLLVSAKGQS 681 Query: 597 --FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 F ++ R P R + + + N + + ++ D Y++ AT Sbjct: 682 IRFSATDEALR-----PMGRATSGVQGMRFNADDELLSLNVVRPD------TYLLVATSG 730 Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK + ++ D R ++ + ++ T G +R Sbjct: 731 GYAKRTSIEEYTAQGRGGKGILTIQYDRRRGNLVGALIVDDDTELYAITSGGGVIRTAAR 790 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750 +R AGR + GVR ++L +GD +I++A A DE Sbjct: 791 QVRK-AGRQTKGVRLMNLGEGDTLIAIARNAEAGDSTDE 828 >gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A] gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. NATL1A] Length = 872 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 351/906 (38%), Positives = 537/906 (59%), Gaps = 72/906 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + +EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVDF N+DGS QEP VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E++DG +A+I NP+++ LM II+GPDFPTG ILGR+GIK Y +G+GSI Sbjct: 194 IPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSGIKETYLSGKGSIT 253 Query: 250 IRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV+ IE DR+ +++TE+PYQ NKA ++E+IA++V +K++ IAD+RDESDR Sbjct: 254 MRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKKLEGIADIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R + V+LN L++ T LQ+ FS NM+AL +P +L +L+ F+ FR Sbjct: 314 DGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVILSLRKMLQVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 E + +RTKYLL KA R H+L+GL +A+ LDE++ +IR + + TA+ +L + Sbjct: 374 VETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTTAKNKLQELHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+++Q+ AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LTDIQSDAILQMQLRRLTALEADKIRLEHEDLVKKII 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+ + R+ I K EL +K++ +T RRT I++ +ED D I E VV ++ Sbjct: 468 DLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P++ + A RG +G++G + E+ V + H S+L FS G Y +R Sbjct: 528 GYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLFSDRGISYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSD 664 +P S A+G ++ +L + + E IT+++ SS+++ Y++ T+ G ++R LS Sbjct: 588 VPQCSRTAKGTPIVQLLPIPREEAITSLLSV----SSFDDENYLLMLTRGGYIKRTPLSA 643 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 F +I +G IA+ L+ D + V + +L+ +K G + F + S +R GR++ Sbjct: 644 FSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLNDSELRPL-GRSAR 702 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+ ++L GD ++SM ++ AD+ ++ + S Sbjct: 703 GVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESEG---------------- 746 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ++L S G GKR FR+ R+G G+RA K + LV Sbjct: 747 ---------------PWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGD--ELV 789 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + + ++++LVS++G ++R ++I SRA GV I +++ V + +I Sbjct: 790 GLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDKLSEVVLVPPEQI 849 Query: 903 VDEAES 908 D+ E+ Sbjct: 850 NDDDEN 855 >gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii] Length = 829 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 521/914 (57%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + +DN + D L A+ E ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I+ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDAP---YLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++ KL+DF NRSG I A+ L DE++ C+ + D+LL + GQ +RF + A Sbjct: 632 LVKKTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D Y+ ++ R Sbjct: 691 LRPM-GRATSGVQGMRFNADD--------------------YLLSLNVVR---------- 719 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 EG ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 720 ---------EGT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGV--LTV 754 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+++ ++ ++ G +IR ++R A R TKGV + + ++ ++ Sbjct: 755 MYDRRRGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLL 814 Query: 893 SVERIRESEIVDEA 906 ++ R E+ DEA Sbjct: 815 AIARNAEAN-ADEA 827 >gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1] gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1] Length = 812 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 357/892 (40%), Positives = 525/892 (58%), Gaps = 89/892 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V IT E++ +++ YA+NVI+ RA+PD+RDG+KPV RRI++ M+Q G+ N K+ K Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A + GEVM +YHPHG+++IYDA+ R+ Q W++R L++ QGNFGS+DGD AA RYTE R Sbjct: 63 ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + K A +L DL K+TVD +PNYD + EP VL + PN+L+NG GIAVGMATNIP HN Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E+ +G +A+IDNP I LD +M ++GPDFPTG I + GI+ AYATG + +RG + Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI-AKVGIREAYATGHAGLKVRGKA 241 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313 IE+ R QI+++EIPYQ+NK +L+ I+ + + +I DI LRDESDR + R+VIE Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 314 LKRGAS--ADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVV 370 LKR A+ ++LNQLY+YT LQS ++V N+ +NG +P LI ++ F+ R +VV Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNG-EPRVLPLIDTMRYFLDHRRDVVT 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT Y L KA++RAHVL GL A+ ++DEV+ +IR S AR LM R Sbjct: 361 RRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q +AIL++RL RL GL R+ ++ E + L I I Sbjct: 411 ----------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L L IK+E+ ++D RR+ I E D+ ED I EDMV+T++ GYVKR Sbjct: 455 LGDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKR 514 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 L+ YR Q+RGG+G SG +R+ED T +F+ STH +LFF+ G V+ EK++ LP Sbjct: 515 TNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAG 574 Query: 611 PQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G + N+L L E I +++ + + +FATK G ++++ ++D+ I Sbjct: 575 RDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGS---FIFATKSGVIKKSLITDYANIT 631 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 +G IA+ L DE++ V+ +D++L TK GQ +RF + +R GR + GV GI L Sbjct: 632 SAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVR-DTGRATQGVIGIRL 690 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD+V+SMA+V D Sbjct: 691 REGDEVVSMALVPGND-------------------------------------------- 706 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +E +L +SE G GKRT D+ R G G+ DV+ ++ G LV + V Sbjct: 707 ------EEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVT--DKTGKLVTLAHVAG 758 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 N++++++++KGT+IR V E+R+ R +GV + + +RV+ IR+ + Sbjct: 759 NEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKED 810 >gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] Length = 882 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 366/909 (40%), Positives = 522/909 (57%), Gaps = 102/909 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M G ++ Y KC+ Sbjct: 23 VEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMYDGGYRPDRNYSKCS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG+YHPHG++AIYDAL R+ Q W++R LI+GQGNFGS D AA RYTEC++ Sbjct: 83 RVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGSAGNDGAAAPRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ +DTVDF+ NYDG QEPV L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 APLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++ +PD L+AL+ II+GPDFP GA ILGR GI++AY TGRGSI R Sbjct: 203 REVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATILGRKGIEDAYRTGRGSITQR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ G R +VVTE+PY VN + KIA V++ ++ IADLRDES R G R+ Sbjct: 263 AVVEVEEIQG-RTCLVVTELPYMVNPDTLANKIASYVKDGKVAGIADLRDESSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ FS NM+AL P ++ L+ +V + +V+V Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDNVPRTLSIDAFLRLWVKHQIDVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L G A++ LDEV+ +IR SP+ + AR LM+ Sbjct: 382 RRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDEARTGLME----------- 430 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + E+Q AIL+L+L RL L R I E + IK+ +I Sbjct: 431 --LLD-------------VDEIQANAILDLQLRRLAALERLKIEEEAQKIEELIKDYNEI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L++ +R I+ +EL +V RRT+I+ G D+ ED I E++VVT++ GY K Sbjct: 476 LATPARQREIVSEELDAVVQRYGDDRRTKILAGFDGDVSMEDLIPEEEVVVTITRGGYAK 535 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R ++YRAQ RGGKG +G +R +D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 536 RTQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEG 595 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+L E I ++ P+ +++ Y++ ATK G V++ +LS++ Sbjct: 596 MRDAKGQHVANLLALQPDEEIAEVLSIPDYDAAQ---YLMLATKSGLVKKTRLSEYDSNR 652 Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 G IA+ L DE++S E+ +LL ++ G +RF S IR GR + Sbjct: 653 TGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRKGMSIRFAADDSTIRP-TGRATS 711 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ KG E T L D Sbjct: 712 GVTGMKF-KG--------------------------------------EDTLLTMDVVTP 732 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GAL 841 G ++ V+E GF KRT ++R+ R G GI+ V+KI E G L Sbjct: 733 GT--------------YVFVVTEAGFAKRTPVEEYRLQGRGGFGIK---VAKITEQRGDL 775 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V V++ D + +V + G ++R ++E+ R T GVV K +R+++V R E+E Sbjct: 776 VGGLIVSEGDDVFVVMEMGKVVRSKIDEVPAKGRNTMGVVFAKPGKKDRIIAVTRGPEAE 835 Query: 902 -IVDEAEST 909 I+DE + + Sbjct: 836 DILDEVDES 844 >gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605] gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506] gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605] Length = 838 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/914 (38%), Positives = 520/914 (56%), Gaps = 95/914 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+ +IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY T RGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 690 LRPM-GRATSGVQGMRF-----------------NIDDRLLSL----------------- 714 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT+ ++ + R GKG+ V Sbjct: 715 -----------NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLT--V 753 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 G LV V+D+ ++ V+ G +IR ++R A R TKGV + + + + ++ Sbjct: 754 MYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 813 Query: 893 SVERIRESEIVDEA 906 ++ R E D A Sbjct: 814 AIARNAEESGDDNA 827 >gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029] gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029] Length = 834 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 344/899 (38%), Positives = 525/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+ + K+ KCA Sbjct: 8 IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 68 KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP HNL Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++ + ++ NP +D +++++ GPDFPTG +I G GI++AY TGRG I +R H Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSAYTTGRGKIKVRARLH 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ RE I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G RVV+E+ Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ RRT+ Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +E Q AILELRL +LTGL + I+ E L +I +LS Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + II+ EL + RRT I + + ED I E +++T+S YVKR+P+ Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521 Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP G + Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581 Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GK +IN L + GE + I+ + N ++ ATK G V++ L F + Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638 Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+++D DE+++ + E ++L T LG VRFP +R GR + GVRG+SL Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+S Sbjct: 698 NEEDKVVS---------------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 CQ + + Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ PV D Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E DE S Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821 >gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1] gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1] Length = 840 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 365/919 (39%), Positives = 526/919 (57%), Gaps = 96/919 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG G Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + D L A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+ RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L++ + + E+Q AIL ++L RL L R I + Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDA---PYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D+++S+ +V Y+ + SG + Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVVREG--------TYLLVAT------SGGYSKR 735 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T ++ D V+G G G T YD + R T Sbjct: 736 TGME-DYPVQGR---------------------GGKGVLTIQYDKK---------RGT-- 762 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 LV VND+D++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 763 --------LVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLL 814 Query: 893 SVERIRES--EIVDEAEST 909 ++ R + E D AES+ Sbjct: 815 AIARNADEPDEPDDNAESS 833 >gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155] gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155] gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155] Length = 842 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 329/749 (43%), Positives = 472/749 (63%), Gaps = 39/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + ++N + D +A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + ++Q +AIL+++L RL L R I + Sbjct: 420 ------------AGLIELLD-------------IDDIQAQAILDMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D+ RRTRIV ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KLSDF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKSKLSDF-DSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ + D+++S+ +V Sbjct: 691 LRPM-GRATSGVQGMRFNEDDRLLSLNVV 718 >gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121] gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121] Length = 843 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 333/749 (44%), Positives = 470/749 (62%), Gaps = 39/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D + I V I EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + D L A+ME I+GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + EV+VRRT+YLL KA++RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ L+D + E+Q AIL ++L RL L R I + Sbjct: 421 GLME----------LLD----------------VDEIQADAILGMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDAP---YLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ D+++S+ +V Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVV 718 >gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129] gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae] Length = 856 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 347/888 (39%), Positives = 525/888 (59%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ YVK A Sbjct: 14 VHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRSYVKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQDW++R +++GQGNFGS D PAA RYTECRL Sbjct: 74 RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSRGNDGPAAMRYTECRL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG QEP VL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 134 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D ++DNP+ D L+A M+ ++GPDFPT I+G GI +AY TGRGSI +R Sbjct: 194 RELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGSQGINDAYTTGRGSIRMR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R+ IV+TE+PYQVN M+ IAE VR+ ++ I+ + DE SDR G R+ Sbjct: 254 GVTSIEE-EGNRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVGMRI 312 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 313 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRHYVTHQIEVIV 372 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 373 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLME----------- 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL ++L RL L R I +EL + +EI + DI Sbjct: 422 ---------------LLTVDEIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDI 466 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + D+ RRT+I+ D+ +ED I RE++VVT++ GY KR Sbjct: 467 LARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIARENVVVTITSTGYAKR 526 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEAS 586 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ +S + Y+V AT G V++++LSD+ + NR Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQI---QSYEDAPYLVLATAQGRVKKSRLSDY-ESNR 642 Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 SG IA+ L+ D+++ C ++D+LL ++ GQ +RF + ++ GR + GV+G+ Sbjct: 643 SGGLIAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMR 702 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 DQ+++M +V K D+ Sbjct: 703 FKGDDQLLAMTVV----------------------------------KPDA--------- 719 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 F+L + G+GKRTS ++ R G+G+ + + G L+A V+ Sbjct: 720 ----------FLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYTP--KRGKLIAAVVVD 767 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+ ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 768 EDDEILAITSAGGVIRTVVNQIRPSSRATMGVRLVNLEDGVELLAIDR 815 >gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614] gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614] Length = 922 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 356/899 (39%), Positives = 518/899 (57%), Gaps = 63/899 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + MQ +Y+ YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KC+ Sbjct: 23 IEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG+YHPHG+ AIYD L R+AQ W +R LI GQGNFGS D AA RYTECR+ Sbjct: 83 RVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECRM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+PNYDG QEPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 APLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +++PD DAL+E I+GPDFP GA+I+GR GI+ AY TGRGSI R Sbjct: 203 REVAEGARWALEHPDATREELQDALIERIKGPDFPNGALIVGRQGIEQAYRTGRGSITQR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +++ + R +V+TE+PY VN + KIAEL ++ I+D+RD+ SDR G R+ Sbjct: 263 AVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQRL 322 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L ++T LQ+ FS NM+AL P + + +V + +V+ Sbjct: 323 VVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLAIDQFISNWVTHQIDVIR 382 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A RAHVL GL A+ LDEV+ +IR SP+ AR + L Sbjct: 383 RRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAR-------------EGL 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I L+D + EVQ AIL+++L +L L R I ++L + I + DI Sbjct: 430 IALLD-------------IDEVQATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDI 476 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +R I+ EL + + RR++I+ D+ ED I E++VV+++ GY KR Sbjct: 477 LANVARQRQIVADELAEIVERYGDDRRSQIIAADGDLSMEDLIPDEELVVSITRGGYAKR 536 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR QRRGGKG G +R +D V + H +LFF++ G VY+ K + LP S Sbjct: 537 TRADQYRTQRRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEAS 596 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G + +LS E I ++ + + + Y+V AT+ G V++ +L D+ + Sbjct: 597 RDAKGGHVAGLLSFQPDENIAQVLAIRDYDQA---PYLVLATRDGLVKKTRLGDYNSPRQ 653 Query: 671 SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 +G IA+ S DE++ E E+ ILL ++ GQ VRF S +R GR + GV G+ Sbjct: 654 AGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVRFQADDSQLRPM-GRATGGVTGM 712 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 GD ++SM++ I + + + SG++ E ++E Sbjct: 713 KFRDGDSLLSMSV-----------IRAAQVEAEEAAEASGESVE------------EMAE 749 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 R Q L Q++ T+++ GF KRT ++R+ +R G GIRA ++ + G LV F V Sbjct: 750 TRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLAN-EDRGELVGAFIV 808 Query: 848 NDNDQIILVSDKGTLIRVPVNE-IRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D D+I+ ++ G ++R P++E R R+T GV + K + V V R E+ DE Sbjct: 809 EDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVTPKKGDSVAVVARSVEANGDDE 867 >gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] Length = 950 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 364/925 (39%), Positives = 534/925 (57%), Gaps = 101/925 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++S DE I + E SY+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G Sbjct: 93 VVSGDESR---IVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DP Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209 Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIA Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY T Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329 Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG +V+RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RD Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR VV RR ++ L+ A+ R H + G+ + + N+DEV+++I+ + + +A L Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQ--- 506 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S Y LSE Q AILE+ L RLT L R + +E +SL Sbjct: 507 ---------------SEYG--------LSEKQAEAILEITLRRLTTLERKKVTDESSSLT 543 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540 +I + +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ Sbjct: 544 EQITKLEQLLSTRANILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 +S GYVK++ + Q RG G+S +R +D ++D + H VLFFS G VY Sbjct: 604 AISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 + +++P S A G L+ ILS+++GER+T+I+P F ED Y++ T +G + Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F I +G IA++L+S DE+ V C+ ++ + + ++ G V +R + Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLS 777 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 RN+ GV + L D++ SM I+ SL+ Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806 Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 D EE+ ++ + +Q ++L V E G+GKR FR S + G+ Sbjct: 807 D-------MEEKSEDASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGY--- 856 Query: 834 KINEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 K E L AVF V ++Q++LVS GT+ R+ V +I I SR +GV++ Sbjct: 857 KFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILM-- 914 Query: 886 AKDERVVSVERIRESEIVDEAESTE 910 R+ +I+ + ++ A+ E Sbjct: 915 ----RLDHAGKIQSASLISAADEEE 935 >gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653] Length = 870 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/907 (39%), Positives = 523/907 (57%), Gaps = 100/907 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 21 IEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 81 RVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 141 APLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NP+ LDAL++ I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 201 REVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+PYQVN + +KIA+LV++ RI IAD+RDE S R G R+ Sbjct: 261 AVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQRL 319 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +V + EV+V Sbjct: 320 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRNWVTHQIEVIV 379 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S +TAR LM+ Sbjct: 380 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLME----------- 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AILE++L RL L R I E + L +I E I Sbjct: 429 ---------------LLEIDEIQANAILEMQLRRLAALERQKITQEHDELQAKINEYNAI 473 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R II +EL ++ ++ RR+++V DM ED I ED+VVT++ GY+KR Sbjct: 474 LASPERQRQIISEELTALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTITRGGYLKR 533 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 534 TKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 593 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +ARG+ + N+L+ E+I I+ + ++ Y+V ATK G V++ L D+ Sbjct: 594 REARGQHVANLLAFQPDEQIARILAIRDYDAVP---YLVLATKSGLVKKTPLKDYDSPRS 650 Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L D R DE++ E + ++D+LL +K Q +RF + ++R GR + G Sbjct: 651 GGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPM-GRATSG 709 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+S + D+++SM +V T T+ + Sbjct: 710 VKGMSFREDDELLSMNVVRPG------------------------TFVFTATDGGYAKRS 745 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 N+ E R Q R G GI+A + + + G+LV Sbjct: 746 NVDEYRVQ-----------------------------GRGGLGIKAAKI--VEDRGSLVG 774 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V ++D+I+ ++ G +IR V+E+R R T GV + + K + VV + R +E Sbjct: 775 ALVVEESDEILAITLGGGVIRTRVSEVRETGRDTMGVQLINLGKRDAVVGI--ARNAEAG 832 Query: 904 DEAESTE 910 EAE E Sbjct: 833 REAEEVE 839 >gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702] Length = 836 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 350/900 (38%), Positives = 519/900 (57%), Gaps = 93/900 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT + +T+EM+NSY+ YA++VI+GRA+P++RDG+KPVHRR+++ M G ++ YVK A Sbjct: 16 ITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAMYDNGFRHDRGYVKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R E MG YHPHG+ AIYD L RMAQ WS+R L++GQGNFGS D PAA RYTECRL Sbjct: 76 RPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F PNYDG QEP VL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 136 TPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSSGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + +++NP+ D L+A M+ ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 196 NELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 255 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 G S IE+ G R+ I++TE+PY VN ++ IAE VR+ +I IA + DE SDR G R+ Sbjct: 256 GKSTIEE-EGSRQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGIAKIDDESSDRVGMRI 314 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 315 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDSVPRTLRLDQMLRLYVKHQIEVIV 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL A+ LDEV+ +IR S + AR L KDL Sbjct: 375 RRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIAREGL----------KDL 424 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D IDD +Q AIL ++L RL L R I +EL + I + I Sbjct: 425 LD-IDD---------------IQADAILAMQLRRLAALERQKIIDELAEIEETIADLKAI 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + ++ RRT IV D+ +ED I RE++VVT++ GY KR Sbjct: 469 LASPERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIARENVVVTITSTGYAKR 528 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR+QRRGGKG G ++ +D V F+ STH ++F ++ G VY+ K + LP S Sbjct: 529 TKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNYGRVYRLKAYELPEAS 588 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE+I I+ +S + Y+V AT+ G V++++L+D+ Sbjct: 589 RTARGQHVANLLEFQPGEQIAEIIQI---QSFEDAPYLVLATQQGRVKKSRLTDYDTARS 645 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L+ D+++ + CT ++D+LL ++ GQ +RF +R GR + GV+G+ Sbjct: 646 GGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTLRPM-GRATAGVKGMR 704 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 DQ++++ +V H D+ C Sbjct: 705 FRGEDQLLALTVV-HDDS------C----------------------------------- 722 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L + G+GKRT ++ + R G+ + G L+ V Sbjct: 723 -----------LLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYDP--KRGKLIGAVTVT 769 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 ++D+I V+ G +IR V +IR SRAT GV + AK +++++R E E + A+ Sbjct: 770 EDDEIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLAIDRNVEDEGEESAQQ 829 >gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99] gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99] Length = 839 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/921 (38%), Positives = 522/921 (56%), Gaps = 97/921 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ ++ E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++N D D L A+ + ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+S DR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V +RRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+ + E+Q +AIL+++L RL L R+ I + Sbjct: 420 ------------AGLIELLG-------------IDEIQAQAILDMQLRRLAALERERIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGDVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATQNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ E D+LL + GQ +RF + A Sbjct: 632 VVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ + D+R+ + Sbjct: 691 LRPM-GRATSGVQGMRF-----------------NADDRLLSL----------------- 715 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 N+ E ++L + G+ KRT ++ + R GKG+ Sbjct: 716 -----------NVVREGT--------YLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMY 756 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + G LV V+D+ ++ ++ G +IR ++R A R TKGV + + + + ++ Sbjct: 757 DRRR--GRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLL 814 Query: 893 SVERIRES---EIVDEAESTE 910 ++ R E E V EA T+ Sbjct: 815 AIARNAEENADEAVAEATDTD 835 >gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] Length = 882 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 95/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KCA Sbjct: 35 IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKCA 94 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA RYTE ++ Sbjct: 95 RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 154 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 155 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 214 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NP D L+ALM I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 215 REVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRGSITMR 274 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIAEL+++ ++ IADLRDE S R G R+ Sbjct: 275 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQRL 333 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR AS V+LN LY++T LQ FS NM+A+ P +L ++ +V + +V+V Sbjct: 334 VIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQMDVIV 393 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 394 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME----------- 442 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E Q +AIL ++L RL L R I++ + L I E I Sbjct: 443 ---------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAI 487 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549 ++S +R II +EL + + RRT+I+ G DM ED I E++VVT++ GY+K Sbjct: 488 IASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIK 547 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K + L Sbjct: 548 RTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEA 607 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L GE I +M E + Y+V AT+ G V++++LSD+ Sbjct: 608 GRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAE---YLVLATRGGMVKKSRLSDYDTNR 664 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 +G IA+ L DE++S T + ++DILL ++ G +RF +++R GR++ GV G+ Sbjct: 665 TAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPM-GRSTSGVTGM 723 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +GD++IS +V EG+ Sbjct: 724 KFREGDELISANVV---------------------------------------TEGS--- 741 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ V+E G+ KRTS ++R+ R+G GI+ + + + GALV V Sbjct: 742 -----------FVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKL--VEDRGALVGGLIV 788 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906 ++ D++++V G ++R VNE+ R T GV+ K + ++ V R ++ ++ D + Sbjct: 789 DEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDD 848 Query: 907 ESTE 910 E+TE Sbjct: 849 ETTE 852 >gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN] Length = 834 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 344/899 (38%), Positives = 524/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ KCA Sbjct: 8 IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 68 KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP HNL Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++ + ++ NP +D +++++ GPDFPTG +I G GI++ Y TGRG I +R H Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVRARLH 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ RE I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G RVV+E+ Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ RRT+ Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +E Q AILELRL +LTGL + I+ E L +I +LS Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + II+ EL + RRT I + + ED I E +++T+S YVKR+P+ Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521 Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP G + Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581 Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GK +IN L + GE + I+ + N ++ ATK G V++ L F + Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638 Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+++D DE+++ + E ++L T LG VRFP +R GR + GVRG+SL Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+S Sbjct: 698 NEEDKVVS---------------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 CQ + + Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ PV D Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E DE S Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821 >gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium lipophiloflavum DSM 44291] gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium lipophiloflavum DSM 44291] Length = 868 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 341/897 (38%), Positives = 513/897 (57%), Gaps = 91/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEMQ SY+ YA++VI+GRA+PD+RDG+KPVHRR+++ M G + YVK A Sbjct: 14 IQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDSGYRPERSYVKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GE M HPHG++AIYD L RMAQ WS+R LI+GQGNFGS D PAA RYTEC++ Sbjct: 74 KPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSPGNDGPAAMRYTECKM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F PNYDG +EP +L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 134 TPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSGGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DN D LDA+ME ++GPDFPT +I+G TGIK+AY TGRGSI +R Sbjct: 194 RELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIVGDTGIKDAYTTGRGSIRMR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN + IA+ + ++ + + DE SDR G R+ Sbjct: 254 GVTEIEEI-GSRQVIVITELPYQVNPDNFIANIADHIANGKLPGASRIDDESSDRVGMRI 312 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ L++ FS NM+++ P L +L+ +V + EV+V Sbjct: 313 VVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDGVPRTLRLDQMLRYYVKHQIEVIV 372 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR L Sbjct: 373 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAR-------------TGL 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I+L+D + E+Q IL ++L RL L R I ++L + +I + DI Sbjct: 420 IELLD-------------VDEIQANEILSMQLRRLAALERQKIVDDLAEIERQIADLKDI 466 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRTR++ D+ +ED I RE++VVT++ GY KR Sbjct: 467 LASPERQRAIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIARENVVVTITSTGYAKR 526 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + FI STH +LFF++ G VY+ K + LP Sbjct: 527 TKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAG 586 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ S + Y+V AT+ G V++++L+D+ Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQI---HSYEDAPYLVLATREGRVKKSRLTDYESARS 643 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D+++ + E+D+LL ++ GQ +RF ++ GR + GV+G+ Sbjct: 644 AGLIAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQLRPMGRATAGVKGMRF 703 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ+++M +V D Sbjct: 704 RGDDQLLAMTVVHDND-------------------------------------------- 719 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 F+L + G+GKRT+ ++ R G G+ + + G L+ V + Sbjct: 720 ---------FLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYTP--KRGKLIGALAVEE 768 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 DQI ++ G +IR V +IR +SRAT GV + +D ++++++ E E +EA Sbjct: 769 EDQIFAITSAGGVIRTEVAQIRPSSRATMGVRLVDLGEDVELLAIDKNVEDEGEEEA 825 >gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4] gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4] Length = 842 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 356/916 (38%), Positives = 527/916 (57%), Gaps = 88/916 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + I V I EMQ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M Sbjct: 1 MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK A+ + MG YHPHG++AIYD L R+AQ W++R +++GQGNFGS Sbjct: 61 WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTEC++ A ++ D+ K+TVDF+PNYDG EPVVL +R PN+LVNG Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT +P HNL EV + +DNPD L A ME I+GPDFPT I+G G Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIVGDQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY+TGRGSI +RG + IE+ G+R IV+TE+PY+VN M+ IAE +R+ +I I Sbjct: 241 IKDAYSTGRGSIRMRGKTSIEE-EGNRTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLALN 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV+VRRT+YLL++A RAH+L GL A+ LDEV+ +IR S E AR Sbjct: 360 HLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIARE 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 L KDL+++ DD Q +AIL+++L RL L R I + Sbjct: 420 GL----------KDLLEIDDD----------------QAQAILDMQLRRLAALERQKIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L ++ +EI + DIL+ R I+ EL + ++ RRTRI+ D+ DED I R Sbjct: 454 QLAAIELEIADYKDILAKPERQRAIVGDELREIVEKYGDDRRTRIIPADGDVTDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTRTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 574 GRVYRIKAYELPEANRTARGQHVANLLAFQPEERIAGVIRI---KSYQDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713 V++++L D+ G IA+ L DE++ ++D+LL ++ GQ +RF + + Sbjct: 631 LVKKSRLEDYDSPRSGGLIAVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTL 690 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 R GR + GV G+ GD ++SM++V R + D E+ Sbjct: 691 RPM-GRATSGVMGMRFNDGDALLSMSVV---------------------RADTSDQEKY- 727 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 F+L +E+G+ KRT+ ++ R GKG+ Sbjct: 728 -------------------------FLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFD 762 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 + G LV V D++ ++ G +IR ++R A R TKGV + + A+ + +++ Sbjct: 763 P--KRGKLVGATIVELQDELYAITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLA 820 Query: 894 VER-IRESEIVDEAES 908 + R E + D+AE+ Sbjct: 821 IARNADEPDDEDKAEA 836 >gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] Length = 874 Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust. Identities = 366/923 (39%), Positives = 528/923 (57%), Gaps = 105/923 (11%) Query: 6 ISSDEEEEKG---ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 ++SDE E + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 13 LTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYD 72 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS Sbjct: 73 GGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGN 132 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 DP AA RYTEC++ A +L D+ ++TVDF+ NYDG QEP VL AR PN+LVNG GI Sbjct: 133 DPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGI 192 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238 AVGMATNIP HNL EV +G + NP L+AL++ I+GPDFPTGA+++GR GI+ Sbjct: 193 AVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFPTGALVVGRKGIE 252 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRGSI +R V +E+ G R+ +VVTE+PYQVN + +KIA+LV++ ++ IAD Sbjct: 253 EAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIAD 311 Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P +L Sbjct: 312 VRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAF 371 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 ++ +V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S +TAR L Sbjct: 372 IRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGL 431 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M G + + E+Q AILE++L RL L R I E Sbjct: 432 M--------------------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEH 465 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + L +I E IL+S R II +EL ++ ++ RR+++V DM ED I ED Sbjct: 466 DELQSKIDEYNAILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDGDMSIEDLIAEED 525 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 +VVT++ GYVKR YR+Q+RGGKG G ++ +D V+ F+ +TH +LFF++ G Sbjct: 526 IVVTITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGR 585 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 VY+ K + LP +ARG+ + N+L+ E+I I+ + E+ Y+V ATK G V Sbjct: 586 VYRAKAYELPDAGREARGQHVANLLAFQPDEKIARILAIRDYEAVP---YLVLATKSGLV 642 Query: 658 RRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPIS- 711 ++ L D+ G IA+ L D R DE++ E + +D+LL ++ Q +RF + Sbjct: 643 KKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLISRKAQSIRFTATD 702 Query: 712 -AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 ++R GR + GV+G+S + D+++SM +V T Sbjct: 703 ESLRPM-GRATSGVKGMSFREDDELLSMNVVRPG------------------------TF 737 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 T+ + N+ E R Q R G GI+A Sbjct: 738 VFTATDGGYAKRTNVDEYRVQ-----------------------------GRGGLGIKAA 768 Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890 + + + G+LV V + D+I+ ++ G +IR VNE+R R T GV + + K + Sbjct: 769 KI--VEDRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDA 826 Query: 891 VVSVERI----RESEIVDEAEST 909 VV + R RE+E V+E +T Sbjct: 827 VVGIARNAEAGREAEEVEEDSAT 849 >gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1] gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1] gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1] gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1] gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1] gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1] gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1] gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1] gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2] gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1] gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2] gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1] gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1] Length = 891 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 354/907 (39%), Positives = 517/907 (57%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S+++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDDAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4] gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4] Length = 843 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 332/749 (44%), Positives = 470/749 (62%), Gaps = 39/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D + I V I EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECRL A +L ++ +TVDF PNYDG QEP VL +R PN+L+NG Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + ++N + D L A+ME I+GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +RGV IE+ + R IV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ + + EV+VRRT+YLL KA++RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ L+D + E+Q AIL ++L RL L R I + Sbjct: 421 GLME----------LLD----------------VDEIQADAILGMQLRRLAALERQKIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + +EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I R Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V+ F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI +++ E + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYEDAP---YLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ D+++S+ +V Sbjct: 691 LRPM-GRATSGVQGMRFNGDDELLSLNVV 718 >gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313] gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9313] Length = 875 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 349/877 (39%), Positives = 521/877 (59%), Gaps = 67/877 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVD+ N+DGS QEP+VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E++DG A+I NP++ LM +I GPDFPTG ILGR+GI+ Y TGRGS+ Sbjct: 194 IPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253 Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ I+D+RDESDR Sbjct: 254 MRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + TAR++L + Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+E+Q AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL R R+ G+I+ EL ++++ PRRT I++ +ED D I E VV ++ Sbjct: 468 NYKDILGRRERVFGLIEDELTKLREKHCLPRRTEILDLGGGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S A+G ++ +L + + E IT+++ S ++ +++ TK G ++R LS F Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITSLLSV---ISFDDDTHLLMLTKGGFIKRTSLSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + +L+ ++ G + F + +R GR + G Sbjct: 645 SKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VR ++L GD ++SM ++ AD + SL++D G Sbjct: 704 VRAMNLRGGDSLVSMDVLPVELAD----------------------QVAKSLEDDQDESG 741 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 + ++L S G GKR FR+ R+G G+RA + E LV Sbjct: 742 ETV------VVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRR--EGDELVG 793 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 + + ++++LVS++G ++R ++I SRA GV Sbjct: 794 LRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGV 830 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%) Query: 519 RIVEGLLDMEDE--DCIVRED--MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574 ++ + L D +DE + +V D V+ S G KRVP++ +R Q+R G G + R E Sbjct: 728 QVAKSLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRRE 787 Query: 575 -DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 D + L ++ +L S G + + ++P Q+R + + L+ G+R++ + Sbjct: 788 GDELVGLRVLGYGEELLLVSERGVIVRTSADKIP---QQSRAATGVRLQRLDAGDRLSEV 844 Query: 634 MPFPEDESSWNN 645 + P D + Sbjct: 845 VLVPPDSEDQDQ 856 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ ++E G+ KR +F ++R +G +A S+ E A+ ND+D Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 ++L SD+G +P + SR KG V + ++E + S+ Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL 615 >gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233] gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233] Length = 831 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 355/885 (40%), Positives = 507/885 (57%), Gaps = 92/885 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I EMQ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+GM G ++ VK +R+ Sbjct: 15 VDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSGFRPDRSTVKSSRVV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG++ IYD + RMAQ WSLR +I+GQGNFGS+ DPPAA RYTECRL + Sbjct: 75 GDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDPPAAMRYTECRLTQL 134 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +LD +G+ TVD PNYD EP VL AR PN+LVNG GIAVGMATNIP HNL EV Sbjct: 135 AMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNLREV 194 Query: 199 VDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 V ++NP+ L+A ME I+GPDFPTGA+I+G+ GI +AY TGRGSI +R V Sbjct: 195 ASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIVGKDGIADAYRTGRGSIRMRAVV 254 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIE 313 +IE+ + R +VVTE+PYQVN ++E IA L ++ +I IAD+ DE SDR G R+VI Sbjct: 255 NIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADIADESSDRIGMRLVIT 314 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A A V+L L+++T+LQ+ F NM+A+ P L ++ +VA + EV+VRRT Sbjct: 315 LKRDAVAKVVLANLFKHTALQTSFGANMLAIVDGVPRTLRLDQMISLYVAHQVEVIVRRT 374 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L+KA +RAH+L GL A+ LDEV+ +IR SP+ E ++ LM+ L+D Sbjct: 375 QYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGLME----------LLD- 423 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + E+Q AIL+++L RL L R I +EL L I + DIL+ Sbjct: 424 ---------------VDEIQATAILDMQLRRLAALERQRIIDELAELERVIADLKDILAK 468 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R II+ EL D+ RRTR+V D+ ED I ED+VVT++ GY KR Sbjct: 469 PERQRAIIRDELTEAVDKHGDDRRTRLVPYDGDVSVEDLIAVEDVVVTITRTGYAKRTKT 528 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +YRAQRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + A Sbjct: 529 DLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEANRNA 588 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + N+L+ ERI ++ P +++ Y+V ATK G V++++L+ F G Sbjct: 589 RGQHVANLLAFQPDERIAEVIQIPHYQAAP---YLVLATKGGLVKKSELAAFDSNRAGGI 645 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAK 731 +A+ L DE++ C D+LL + GQ +RF + +R GR + GV G+ Sbjct: 646 VAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPM-GRATSGVLGMRFNA 704 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+++SM++V E Q Sbjct: 705 GDELLSMSVVY---------------------------------------------EGAQ 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 L E +G+ KRT ++ + R GKG+ + G LV V+ + Sbjct: 720 VLVATE--------RGYAKRTDIDEYPVQGRGGKGVLTIQYDR--RRGKLVGALIVDLDT 769 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++ ++ +IR E+R A R T GV + + ++ + +V++ R Sbjct: 770 EVYAITSGAGVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIAR 814 Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 9/119 (7%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +G++S ++L E ++T++ G+ KRT + +R R GKG++ + + + + Sbjct: 499 DGDVS---VEDLIAVEDVVVTITRTGYAKRTKTDLYRAQRRGGKGVQGAALKQDDIVAHF 555 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 F + +D I+ ++KG + R E+ A+R +G + + DER+ V +I Sbjct: 556 ---FVCSTHDWILFFTNKGRVYRAKAYELPEANRNARGQHVANLLAFQPDERIAEVIQI 611 >gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] Length = 879 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 347/912 (38%), Positives = 519/912 (56%), Gaps = 93/912 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ +S D + I + I +EMQ SY+ YA++VI+GRA+PD+RDG+KPVHRRI++ M Sbjct: 1 MSDDTLSGDTYDR--IFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + YVK AR + MG++HPHG++AIYD L R+AQ W +R L++GQGNFGS Sbjct: 59 YDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D PAA RYTEC++ A ++ D+ ++ VDF PNYDG QEP VL +R PN+L+NG Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNLGE+ + ++DN D D LDA ME ++GPDFPT +I+G +G Sbjct: 179 GIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIVGDSG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 IK+AY TGRGSI +RGV+ IE+ G R+ IV+TE+PY VN + IAE V ++ I Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEV-GTRQVIVITELPYNVNPDNFISGIAEQVAAGKMTGI 297 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + DE SDR G R+V+ LKR A V+LN LY+++ L++ FS NM++L P L Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDGVPRTLRLD 357 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +L+ +VA + EV+VRRT++ L++A RAH+L GL A+ LDEV+ +IR SP + AR Sbjct: 358 QMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 417 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM L+D + EVQ AIL ++L RL L R I + Sbjct: 418 GLMS----------LLD----------------VDEVQADAILAMQLRRLAALERQKIVD 451 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L ++ EI + DIL+ R I+ EL V D+ RRT++V D+ +ED I R Sbjct: 452 DLAAIEAEIADYKDILAKPERQRAIVADELREVVDKHGDERRTKLVAATGDVTEEDLIAR 511 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ Sbjct: 512 ENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNF 571 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L E+I ++ ++ + Y+V AT+ G Sbjct: 572 GRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVIQI---QTYQDAPYLVLATRDG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 V++++L+D+ +G IA+ L+ D ++ ++DILL ++ GQ +RF ++ Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQL 688 Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV+G+ DQ+++M V +D Y Sbjct: 689 RPMGRATAGVKGMRFRGDDQLLAMTTV--SDGQY-------------------------- 720 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 +L + G+GKRT ++ R G G+ + Sbjct: 721 -------------------------LLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTP 755 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + G L+ V ++DQI ++ G +IR VN+IR +SRAT GV + D ++++ Sbjct: 756 --KRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLGDDVELLAI 813 Query: 895 ERIRESEIVDEA 906 + E E EA Sbjct: 814 DVNVEDEGEQEA 825 >gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] Length = 876 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/904 (39%), Positives = 520/904 (57%), Gaps = 95/904 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KCA Sbjct: 29 IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKCA 88 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA RYTE ++ Sbjct: 89 RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 149 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 208 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NP L+ALM I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 209 REVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRGSITMR 268 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIAEL+++ ++ IADLRDE S R G R+ Sbjct: 269 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQRL 327 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR AS V+LN LY++T LQ FS NM+A+ P +L ++ +V + +V+V Sbjct: 328 VIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQMDVIV 387 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 388 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME----------- 436 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E Q +AIL ++L RL L R I++ + L I E I Sbjct: 437 ---------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549 ++S +R II +EL + + RRT+I+ G DM ED I E++VVT++ GY+K Sbjct: 482 IASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITRGGYIK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K + L Sbjct: 542 RTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGYELQEA 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L GE I +M E + Y+V AT+ G V++++LSD+ Sbjct: 602 GRDAKGQHIANLLEFQGGEHIAQVMELKSYEDAE---YLVLATRGGMVKKSRLSDYDTNR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 +G IA+ L DE++S T + ++DILL ++ G +RF +++R GR++ GV G+ Sbjct: 659 TAGLIAINLREGDEVVSAFTVSDKDDILLVSRNGMSLRFHADDASLRPM-GRSTSGVTGM 717 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +GD++IS +V EG+ Sbjct: 718 KFREGDELISANVV---------------------------------------TEGS--- 735 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ V+E G+ KRTS ++R+ R+G GI+ + + + GALV V Sbjct: 736 -----------FVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKL--VEDRGALVGGLIV 782 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EA 906 ++ D++++V G ++R VNE+ R T GV+ K + ++ V R ++ ++ D + Sbjct: 783 DEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDD 842 Query: 907 ESTE 910 E+TE Sbjct: 843 ETTE 846 >gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39] gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183] gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39] gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae] gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183] Length = 834 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 343/899 (38%), Positives = 524/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RR+L+ M Q+ + K+ KCA Sbjct: 8 IVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 68 KICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +A +L++DL KDTVD PNYD + EPVV +++PN+L NG GIAVGMATNIP HNL Sbjct: 128 THSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+++ + ++ NP +D +++++ GPDFPTG +I G GI++ Y TGRG I +R H Sbjct: 188 GELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKVRARLH 247 Query: 256 IEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ RE I++TE+PY VNK+ ++E+IA LV EK + I+D+RDESD+ G RVV+E+ Sbjct: 248 VEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G S+++I+N+LY++T +Q F NM+AL+ P ++ ++ A++ R+EV+ RRT+ Sbjct: 308 KKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVIRRRTR 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNKA RAHVL G A++ LD +V+ IR S N E A+ +++ Sbjct: 368 YELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE--------------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +E Q AILELRL +LTGL + I+ E L +I +LS Sbjct: 413 -----------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDE 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + II+ EL + RRT I + + ED I E +++T+S YVKR+P+ Sbjct: 462 GLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYVKRMPV 521 Query: 554 SVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 V++ QRRGG G +G M+ F+ ++ T +L F++ G Y KVW+LP G + Sbjct: 522 KVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERR 581 Query: 613 ARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 A+GK +IN L + GE + I+ + N ++ ATK G V++ L F + Sbjct: 582 AKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFSNPRKK 638 Query: 672 GKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G A+++D DE+++ + E ++L T LG VRFP +R GR + GVRG+SL Sbjct: 639 GIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVRGVSLK 697 Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + D+V+S Sbjct: 698 NEEDKVVS---------------------------------------------------- 705 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 CQ + + Q +L V ++GFGKR+ DFR +NR G G+R+ +++ N G ++ PV D Sbjct: 706 CQ-IVTENQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGAIPVTD 762 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D I+L+S +G IR+ + ++R+ R+T+GV + + + +VS+E++ +E DE S Sbjct: 763 HDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDDEVLS 821 >gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 843 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/896 (40%), Positives = 515/896 (57%), Gaps = 90/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRR+L M + ++ YVK A Sbjct: 35 VIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSA 94 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I GEV+G YHPHG++A+Y+ + RMAQ +S+R LI+GQGNFGSVDGD AA RYTE RL Sbjct: 95 KIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARL 154 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ K+TV F PN+D + Q+P VL A +PN+LVNG GIAVGMATNIP HNL Sbjct: 155 TKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNL 214 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E V+ +A+I NPDI L LM+I+ GPDFPTG I+G G+ AYATG+GSI IR Sbjct: 215 KEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKVD 274 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + + RE IV+ EIPYQVNK MLEKI +LV EK I I+++ D SDR+G RV I +K Sbjct: 275 IIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVK 334 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A VILNQL++ T LQ + + M+A+ +P+ F+L ILK++ R EVVV+RT++ Sbjct: 335 KDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTEF 394 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ RAH+L GL IA+ N+DEV+RIIR S + A+ LM Sbjct: 395 DLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLM----------------- 437 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T LSE+Q AILE+RL RLT L I +EL + I I + DILS Sbjct: 438 ---------ATFSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPD 488 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ II EL V R T I L+ ED I E++VV +S ++KR+P Sbjct: 489 RVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLP 548 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + +R Q+RGGKG G+ + EDFV L TH +++ FS+ G + KV+ LPI + + Sbjct: 549 MDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKE 608 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARGK+L +++LN E IT++ F +++ Y++ T+ G V++ +L +F +SG Sbjct: 609 ARGKSLKAVINLNDDEIITSLFTF----RNFDESYLLMVTREGFVKKIQLDEFTNTKKSG 664 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA+ L DE++ V D+ + +K G +R ++ +R GR + GV + L Sbjct: 665 IIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRS-QGRTASGVTAMKLEDD 723 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + + + VE N + Sbjct: 724 DSIAGI----------------------------------------TKVEPNTN------ 737 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 + +SE GFGKRT +F R GKG+ + + N G V + V + D+ Sbjct: 738 -------LFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKN--GRAVGISSVKEEDE 788 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +++++ G IRV V I + R+ GV + +T ++ V +RES+ D AES Sbjct: 789 LLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESD-SDSAES 843 >gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1] Length = 891 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 354/907 (39%), Positives = 516/907 (56%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC] gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC] Length = 830 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 351/896 (39%), Positives = 534/896 (59%), Gaps = 91/896 (10%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E+ I ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP RRIL+ M Q+ + K+ Sbjct: 4 KEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKH 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCA+I G+ G YHPHG + IY L RMAQ+W++R L++GQGNFGS+DGDP AA RYT Sbjct: 64 RKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL +A FL++DL KDTVD NYD + EPVV +++PN+L NG GIAVGMATNIP Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE+++ + V+ NP+ ++ ++E++ GPDFPTG +I G GI++ Y TGRG I +R Sbjct: 184 PHNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTGGIICGGEGIRSTYHTGRGKIKVR 243 Query: 252 GVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H+E+ + RE I++TE+PY VNK+ ++E+IA+LV +K + I+D+RDESD+ G RV Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+G S+++++N+LY++T +Q F NM+AL+ P + ++ A++ R EV+ Sbjct: 304 VLELKKGESSEIVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVIR 363 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNKA RAH+L G A++ LDEVVR IR S + E A+ +L++ Sbjct: 364 RRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVE----------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q+ AILELRL +LTGL + I+ E + L +I + Sbjct: 413 ---------------NFGFTEQQSVAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRV 457 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L+ + II+ EL ++ TPRRTRI + + ED I E +++T+S YVK Sbjct: 458 LADEGLVKDIIRNELQDIQRVHKTPRRTRIEFDADDIRDIEDIITNEPVIITISGDDYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 R+P+ V+R Q+RGG G SG M+ DF+ ++ ST +L F++ G Y KVW+LP Sbjct: 518 RMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPE 577 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G +A+GK +IN L + GE++ ++ E N ++ ATKHG V++ L F Sbjct: 578 GERRAKGKPIINFLEGIRPGEQLAAVLNVKNFE---NAGFLFLATKHGVVKKVALEAFSN 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G A+++D DE+++ T E + ++L T+LG VRFP +R GR + GVRG Sbjct: 635 PRKKGIRALEIDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVRG 693 Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 +SL + D+V++ IV K+D SV Sbjct: 694 VSLKNENDRVVACQIV----------------------------------KDDQSV---- 715 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L V + GFGKR+ DFR +NR G G+R+ +++ N G ++ Sbjct: 716 ---------------LVVCDNGFGKRSQVGDFRETNRGGVGVRSILINERN--GDVLGAI 758 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V DND I+L+S +G IR+ + ++R+ R+T+GV + + +V++E++ +E Sbjct: 759 SVTDNDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKDGDILVAMEKLSLNE 814 >gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] Length = 870 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 356/918 (38%), Positives = 525/918 (57%), Gaps = 99/918 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + E E I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTE---TPGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++++ KC+R+ G+VMGKYHPHG++AIYDAL R+ QDWSLR L+ GQGNFGS Sbjct: 58 YDGGYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSP 117 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTEC++ A ++ D+ +D VDF+ NYDG QEP VL +R+PN+LVNG Sbjct: 118 GDDPAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSA 177 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV G +++PD L+ALM I+GPDFPT A ILGR G Sbjct: 178 GIAVGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATILGRKG 237 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I+ AY TGRGSI +R V +E+ G R+ +VVTE+PYQVN + +KIA+LV++ R+ I Sbjct: 238 IEEAYRTGRGSITMRAVVEVEEIQG-RQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGI 296 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A A V+LN LY++T LQ F NM+AL P ++ Sbjct: 297 ADIRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSID 356 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 ++ +V+ + +V+ RRT++ L KA + H+ G A+ LDEV+ +IR SP+ E AR Sbjct: 357 AFVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARN 416 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ + + E+Q +AIL L+L RL L R +I + Sbjct: 417 GLME--------------------------LLGIDELQAQAILNLQLRRLAALQRQEIMD 450 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 ++L +I E IL S R I+ +EL +V D+ RRT I+ ++ ED I Sbjct: 451 RHDALEADITELNAILGSPERQRTIVSEELATVVDKFGDERRTHILPFDGEVSIEDLIAE 510 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR + YRAQRRGGKG G +R++D V F+ +TH +LFF++L Sbjct: 511 EDVVVTITRGGYAKRTRVDAYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNL 570 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP A+G+ + N+L+ GE+I ++ + E + ++V ATK G Sbjct: 571 GRVYRAKAYELPEAGRDAKGQHVANLLAFQPGEKIAQVLDLRDYEQAE---HLVLATKRG 627 Query: 656 NVRRNKLSDFIQINRSGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ +L+++ G IA+ L D R DE+++ + D++L ++ GQ VRF Sbjct: 628 LVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTA 687 Query: 711 S--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 S A+R GR + GV G+ D +++M +V ++ + Sbjct: 688 SDEALRPM-GRATSGVTGMKFRGDDDLLAMDVV------REDAFLF-------------- 726 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 + EG I++ LTV ++R R G GI+ Sbjct: 727 ----------TVTEGGIAKRTA----------LTVE-----------NYRQQGRGGLGIK 755 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++ + N G LV + +D+++++ ++G ++R +E+ R T+GV+ Sbjct: 756 VANLPEAN--GDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIFAKPDTG 813 Query: 889 ERVVSVERIRESEIVDEA 906 +R+++V R E + D+ Sbjct: 814 DRIIAVARNSERHLEDDG 831 >gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1] Length = 902 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 354/906 (39%), Positives = 515/906 (56%), Gaps = 90/906 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +ARG + +LS E+I +M S Y++ AT+ G V++ L + Sbjct: 599 GREARGGHVAGLLSFLPDEKIAQVMTL---RSYDGAEYLLLATRKGMVKKTALKAYDSSR 655 Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G+ Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+++SM+I+ H+D D+R Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV V Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLVV 785 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEIV 903 ++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVA 845 Query: 904 DEAEST 909 DE+ T Sbjct: 846 DESVET 851 >gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1] gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2] gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2] gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1] gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1] gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2] gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1] gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2] gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1] gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2] gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4] gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3] gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1] gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1] gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1] gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2] gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1] gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2] gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2] gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3] gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2] gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1] gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2] gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3] gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1] gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2] gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2] gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3] gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2] gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1] gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1] gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2] Length = 891 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 354/907 (39%), Positives = 516/907 (56%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 812 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 349/890 (39%), Positives = 519/890 (58%), Gaps = 100/890 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+ +K + K A Sbjct: 10 VIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GEVMGKYHPHG+AAIY + ++AQ++++R L++G GNFGS+DGD AA RYTE R+ Sbjct: 70 NIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTESRM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL D+ KDTVD+RPNYD S +EP VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 130 SRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+V G IDNPDI ++ LM+ I GPDFPTG ++ R GI+ AY TGRG+I R Sbjct: 190 REIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILEAR-GIRQAYETGRGTIRTRARYE 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G + IVVTEIPYQVNKA ++EKIAELVR+K++ I DLRDESDR+G R+VIEL+ Sbjct: 249 IEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVIELR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + + +VILN+L+R+T ++ F + M++L +P L +++ +V R+EV+ RRT Y Sbjct: 309 KDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINRRTTY 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LN A++R H+L GL IA+ NLDE++ +IR S + E AR EL R Sbjct: 369 ELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSR--------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE+Q AIL++RL +LTGL R + NE + + I + DIL+ Sbjct: 414 -----------FNLSEIQANAILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R+L +IK++L ++ RRT I + E+ED I ++V+T+S+ GYVKR PL Sbjct: 463 RVLSMIKEDLDDIEKRYGDNRRTEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPLDT 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR+Q+RGGKG S +R EDF D+ + S ++LFF++ G V+ + +++P S QA+G Sbjct: 523 YRSQKRGGKGVSATTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKG 582 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 L+N L L GE++TTI+ E + L V TK G +++ L F + +SG IA Sbjct: 583 MPLVNFLELRPGEKVTTIVGAREFNREHHLLMV---TKKGIIKKTALKAFQNVRKSGLIA 639 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L DE++ V + +++ G + F +R GR + GV+ I+L+K D V Sbjct: 640 VNLREDDELVGVIRVKTGSKVMIANSRGISIMFDEKQVRSM-GRTAAGVKAINLSKDDYV 698 Query: 736 ISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + + ++L + Y +R Sbjct: 699 VGLDRYREGADVLLVTEKGYGKRTA----------------------------------- 723 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E KL+ + G G + I+ R+GK + VSK Sbjct: 724 -LSEFKLQ-------NRGGKGLKA----IEITRRNGKLVAFQIVSK-------------- 757 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 D++++++ +G +IR+ V +I R ++GV++ +++R+V V R + Sbjct: 758 -EDELVILTSEGNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFK 806 >gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor Length = 939 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 344/884 (38%), Positives = 515/884 (58%), Gaps = 88/884 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + KCA Sbjct: 82 VVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 141 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R L++G GNFGS+D DPPAA RYTECRL Sbjct: 142 RVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRL 201 Query: 136 QKAAHFLLD-----DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 F LD +G+ VDF PN+D S +EP +L AR P++L+NG GIAVGMATNI Sbjct: 202 DVGCFFFLDIDAIFIIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 259 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VD +I+NP+ L L+E + GPDFPTG I+G GI AY TGRG +V+ Sbjct: 260 PPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVM 319 Query: 251 RGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 RG + IE R I++ E+PYQ NK+ ++E+IAELV EK + I+D+RDESDR G Sbjct: 320 RGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGM 379 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRGA ++LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR V Sbjct: 380 RVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSV 439 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR ++ L++A +R H++ G+ I + NLD V++IIR + N AR L++ Sbjct: 440 IERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE-------- 491 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q A+L++ L +LT L R +E SL EI + Sbjct: 492 ------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLN 533 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547 ++LS++ + +I QE +K++ TPRR+ I + +++D D I E+M++ +S GY Sbjct: 534 ELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGY 593 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ + + Q RG G+S MR D +D + TH VL+FS G VY + +++P Sbjct: 594 VKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 653 Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + A G L+ +LSL+ GERIT+I+P F ED+ Y+V T +G +++ L+ Sbjct: 654 ECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVMLTVNGYIKKVPLNA 707 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG I+++L DE+ V C ++ + L ++ G + + +R GR + GV Sbjct: 708 FSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGV 766 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + L +GD++ SM I+ + N Sbjct: 767 LAMKLKEGDKMASMDII-------------------------------------PATSHN 789 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E + L ++L +++ G GKR FR N + G++ + + A+ V Sbjct: 790 MPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVV 849 Query: 845 -FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 F + D ++Q++LVS GT+ R+ V +I I SR+ +GV++ Sbjct: 850 GFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 893 >gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] Length = 816 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 347/891 (38%), Positives = 521/891 (58%), Gaps = 89/891 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + +E+++SYL YA++VI+GRA+PD RDGLKPV RR+L+ M+++G+ N+ + K A Sbjct: 14 VIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLELGLRHNQAFKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GE MGKYHPHG+AAIY+ +AR++QD+SLR L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 74 RVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGDPPAAMRYTEARL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ ++TV++ PN+D S QEP+VL +R PN+LVNG GIAVGMATN+P HNL Sbjct: 134 HSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIAVGMATNMPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D A++++P I+L LM ++ GPDFPTG VILGR GI +AY TGRG +++RG + Sbjct: 194 REVIDATCALLEDPQIELGELMALLPGPDFPTGGVILGRDGIVDAYKTGRGKVIVRGCAD 253 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE R+ IV+TEIPY VNK +++E IA+ + + I DLRDES+R+G RVV+EL Sbjct: 254 IEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDESNREGIRVVLELH 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +++L QLY T LQS F V +AL +P TL IL+ F+ R VV RRT++ Sbjct: 314 RDADPNLVLRQLYSRTQLQSTFGVINLALVDGRPRVLTLHQILQVFLDHRRAVVRRRTEH 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH++ GL A+ +D+V+ +IR + +P +A+ L++ Sbjct: 374 RLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVE---------------- 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T+ SEVQ +AIL++RL RLTGL R + EL L +I+ IL++ S Sbjct: 418 ----------TLGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPS 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L G+++ EL ++ + RRTRI + + D+ ED I ++VV +S G+++R+PL Sbjct: 468 ILDGVVRGELQEIRAAYEDDRRTRIEDAVEDVSAEDLIPESEIVVVLSRDGFLRRMPLQD 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-AR 614 YR Q RGGKG G R ED + + + +TH ++ F+S G V+ + + LP P+ + Sbjct: 528 YRCQSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLP--EPKTGK 585 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK + +SL +GER+ T+ D +V F T+ G +R +++ INR+G+ Sbjct: 586 GKHVSTFVSLEEGERVVTL----RDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRR 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + L D I V E+++LLTT GQ +R P R GR + GVRG+ L +GD Sbjct: 642 ILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRP-QGRTAHGVRGVRLDEGDL 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ ++ E Q L Sbjct: 701 VVGCDVI---------------------------------------------EPGRQVLF 715 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 + E+ I GKRT +F +R G G+RA + ++ G LV + V ++D+++ Sbjct: 716 ISERGI--------GKRTPYDEFTAHHRGGGGVRAMKL--VDRTGDLVGAWGVREDDELV 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 ++S KG ++R+ EI RA G + + + V V IR +++ +E Sbjct: 766 VISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCADLEEE 816 >gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] Length = 818 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 349/894 (39%), Positives = 510/894 (57%), Gaps = 87/894 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + I DE++ +++ Y+++VI+ RA+PD RDGLKPVHRRI++ M + + K Sbjct: 5 ENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSAGGK 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA I G+V+GKYHPHG+A++YDAL R+ QD+S R +++ GNFG++ GDPPAA RY Sbjct: 65 TKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAAYRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K A +++D+ KDTVD PNYD + +EP VL +++P +L NG GIAVGMATN+ Sbjct: 125 TEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV A IDN +I +D L+ I+GPDFPTG +I G+ GI +AY TGRG I++ Sbjct: 185 PPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIFGKHGIADAYRTGRGKILV 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 RG +IE + E IV TE+PY VN + EKI EL R+K I I+ + DE SDR G R Sbjct: 245 RGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDRSGMR 304 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKRGA V++NQL+ T+LQS F V +AL +P+ L I+K FV R+EV+ Sbjct: 305 IVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKGRPQILNLKQIIKCFVDHRDEVI 364 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR + LNKAR R H+L L AV +DEV+++IR S + A+ LMQR Sbjct: 365 TRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQR--------- 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G D E+Q AI+E+RL RLT L D++R E+ + I C D Sbjct: 416 -----------FGFD------EIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCED 458 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L IIK E + ++ R+T IV G ++ + ED I EDMV+ +S LGY+ Sbjct: 459 LLAHHEKILAIIKDETNELSEKYGDDRKTDIVAGEVESINVEDLIKEEDMVILISKLGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV +S Y++Q RGGKG + +ED++ +F+ STH ++F ++ G Y KV +P Sbjct: 519 KRVSVSQYKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPE 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S +RG + ++L++N E ITTI+ E S NN Y+ AT +G V++ SDF Sbjct: 579 ASKTSRGSHIKSLLAVNANEDITTIVSLK--EFSENN-YLFMATANGVVKKTPTSDFKNA 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G A++LD D ++S T ++++LL ++ GQ +R +R GR+S GV G+ Sbjct: 636 KSRGMQAVRLDEGDTLVSAILSTGKDELLLVSRRGQALRINEEDVRPM-GRSSRGVAGLK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L++GD++ S AI +H + D Sbjct: 695 LSEGDELCS-AIRIHTEPDSK--------------------------------------- 714 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPV 847 IL V+EKG GKR S +F N G+G + + + G ++ V Sbjct: 715 -----------ILVVTEKGIGKRVDSAEF---NAHGRGTGGQKIFGNVEDKGEIIGALCV 760 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 D D I+ ++ +GT +RV +I + R G+ + S + VV V+RI E Sbjct: 761 RDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDE 814 >gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R] gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R] Length = 856 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 315/733 (42%), Positives = 466/733 (63%), Gaps = 38/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ YVK A Sbjct: 12 VNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNGYRPDRSYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG +HPHG+ AIYD L RMAQ WS+R L++GQGNFGS D PAA RYTECR+ Sbjct: 72 KPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NPD + L+A M+ ++GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 192 NELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L++++ LQ+ F NM+++ P L +L+ +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L+KA +RAH+L GL A+ LDEV+ +IR SP P+ AR LM L Sbjct: 371 RRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGLMS----------L 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E Q AIL ++L RL L R I +EL + +EI + DI Sbjct: 421 LD----------------VDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + ++ RR++I+ D+ +ED I RE++V+T++ GY KR Sbjct: 465 LASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIARENVVITITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEAS 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669 ARG+ + N+L GE+I ++ S+N+ Y+V AT HG V++++L D+ Sbjct: 585 RTARGQHVANLLEFQPGEQIAQVIQL----ESYNDFPYLVLATAHGRVKKSRLLDYESAR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 G IA+ L+ D ++ C +E+D+LL ++ GQ +RF ++ GR + GV+G+ Sbjct: 641 SGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMR 700 Query: 729 LAKGDQVISMAIV 741 DQ++SM++V Sbjct: 701 FRDNDQLLSMSVV 713 >gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 853 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 329/894 (36%), Positives = 522/894 (58%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 46 ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA RYTE RL Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T IP HNL Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS +IR + Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ +R + Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E I+ S Sbjct: 450 ----------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK++ L Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDE 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G +D + L I +T + +L SS ++K + ++P GS Q +G Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E I+ ++P+ ++ ++N +++ + GN+++ LS F I ++GKIA Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 676 Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +KL D ++S D IL+ + G R+ I +R +GR ++GV+GI L +G Sbjct: 677 LKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I C+ Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 FI ++S+KGFGK+T ++R++ R+ KG+ + D K G LV + + +N + Sbjct: 744 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 799 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 800 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385] gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385] Length = 866 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 342/901 (37%), Positives = 515/901 (57%), Gaps = 93/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 ++ + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRRI++ M G + YVK A Sbjct: 17 VSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYAMYDNGYRPERSYVKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG +HPHG++AIYD L RMAQ WS+R L++GQGNFGS D PAA RYTECRL Sbjct: 77 RPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP +L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 137 TPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGSGGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +D+ D D L+A+ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 197 TELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDKGIKDAYTTGRGSIKMR 256 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R IV+TE+PYQVN ++ IAE VR+ +I I+ + DE SDR G R+ Sbjct: 257 GVTSIEEERG-RTIIVITELPYQVNPDNLVSSIAEQVRDGKIAGISKIDDESSDRVGMRI 315 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + +V+V Sbjct: 316 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQLLRLYVDHQIDVIV 375 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL A+ LDEV+ +IR S PE AR LM DL Sbjct: 376 RRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIARTGLM----------DL 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL +RL +L L R I +EL L + I + DI Sbjct: 426 LD----------------IDELQADAILRMRLRQLAALERQKIIDELKELELTIADLKDI 469 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + + RRT+I+ D+ +ED I RE++V T++ GY KR Sbjct: 470 LARPERQRQIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIARENVVATITSTGYAKR 529 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +YR Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 530 TKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTNFGRVYRLKAYELPEAS 589 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE I ++ ++ + Y+V ATK G V+++KL+D+ Sbjct: 590 RTARGQHVANLLEFQPGEHIAQVIQL---QTYEDAPYLVLATKQGRVKKSKLTDYDSARS 646 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L+ D ++ + C+ +D+LL ++ GQ +RF +R GR + GV+G+ Sbjct: 647 GGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDTLRPM-GRATAGVKGMR 705 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 D ++++ +V + DS Sbjct: 706 FRGEDALLALTVV----------------------------------REDS--------- 722 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +++ + G+ KRT ++ R G G+ +K + G L+ V+ Sbjct: 723 ----------YLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKYNK--KRGKLIGALVVD 770 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I ++ G+++R V +IR +SR T GV + K +++++R E E + A Sbjct: 771 QDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELLAIDRNVEDEGEEHAAK 830 Query: 909 T 909 T Sbjct: 831 T 831 >gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254] gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254] Length = 645 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 303/626 (48%), Positives = 427/626 (68%), Gaps = 26/626 (4%) Query: 17 TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76 ++V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+ + K AR Sbjct: 41 SNVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSAR 100 Query: 77 ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136 I G+V+GKYHPHG++++Y A+ RMAQD+++R LI+G GNFGS+DGD AA RYTE R+ Sbjct: 101 IVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMA 160 Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 K LL D+GKDT+D+R N+D S EPVVL A+ PN+L+NG GIAVGMATNIP HNLG Sbjct: 161 KITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLG 220 Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 EVVDG VA+IDNP+I +D L+ I+GPDFPTG +I G+ GI +AY TGRG + + G + Sbjct: 221 EVVDGIVALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEV 280 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 E + +E I+VTE+PYQVNKA ++EKIA+LVR+K+I I+DLRDE+DR G R+VIELK+ Sbjct: 281 ETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKK 340 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 G +++ILN LY++T LQ+ F V M+AL P L +L+ ++ R EV+ RRT++ Sbjct: 341 GEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFE 400 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KA++RAH+L G IA+ N++EV+RIIR S + AR EL+ + Sbjct: 401 LKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIAKFG-------------- 446 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 SE+Q +AIL++RL RLTGL RD I E N L + I+E ILS S+ Sbjct: 447 ------------FSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSK 494 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 + GIIK+E L +K++ RRT I ++ ED I E++VVT++ GYVKRV + Y Sbjct: 495 IYGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTY 554 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R+Q+RGG G + ++D V D++I T ++L F++ G V+ KV+ +P QARGK Sbjct: 555 RSQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGK 614 Query: 617 ALINILSLNQGERITTIMPFPEDESS 642 + NI++L+ E+++TI+ E E + Sbjct: 615 LIGNIINLDTDEKVSTIIRVREFEKN 640 Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 36/162 (22%) Query: 770 EEITS-LKNDSSVEGNISEERCQELKLKEQF--------------------------ILT 802 EE+T L +DS + G I EE LKLKE F ++T Sbjct: 483 EELTGILSDDSKIYGIIKEE---ALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVT 539 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 ++EKG+ KR + +R R G G+ AT+ E + ++ D +++ + KG + Sbjct: 540 LTEKGYVKRVAIDTYRSQKRGGIGVNATNTI---EDDVVKDMYIAKTLDTLLIFTTKGKV 596 Query: 863 IRVPVNEIRIASRATKGVV---IFSTAKDERVVSVERIRESE 901 V V EI + +G + I + DE+V ++ R+RE E Sbjct: 597 FSVKVYEIPETGKQARGKLIGNIINLDTDEKVSTIIRVREFE 638 >gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group] Length = 931 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 344/884 (38%), Positives = 515/884 (58%), Gaps = 88/884 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + KCA Sbjct: 82 VVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 141 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R L++G GNFGS+D DPPAA RYTECRL Sbjct: 142 RVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRL 201 Query: 136 QKAAHFLLD-----DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 F LD +G+ VDF PN+D S +EP +L AR P++L+NG GIAVGMATNI Sbjct: 202 DVGCFFFLDIDAIFIIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 259 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGE+VD +I+NP+ L L+E + GPDFPTG I+G GI AY TGRG +V+ Sbjct: 260 PPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVM 319 Query: 251 RGVSHIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 RG + IE R I++ E+PYQ NK+ ++E+IAELV EK + I+D+RDESDR G Sbjct: 320 RGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGM 379 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKRGA ++LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR V Sbjct: 380 RVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSV 439 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + RR ++ L++A +R H++ G+ I + NLD V++IIR + N AR L++ Sbjct: 440 IERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE-------- 491 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q A+L++ L +LT L R +E SL EI + Sbjct: 492 ------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLN 533 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547 ++LS++ + +I QE +K++ TPRR+ I + +++D D I E+M++ +S GY Sbjct: 534 ELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEKGY 593 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR+ + + Q RG G+S MR D +D + TH VL+FS G VY + +++P Sbjct: 594 VKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 653 Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + A G L+ +LSL+ GERIT+I+P F ED+ Y+V T +G +++ L+ Sbjct: 654 ECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVMLTVNGYIKKVPLNA 707 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F I SG I+++L DE+ V C ++ + L ++ G + + +R GR + GV Sbjct: 708 FSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGV 766 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + L +GD++ SM I+ + N Sbjct: 767 LAMKLKEGDKMASMDII-------------------------------------PATSHN 789 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + E + L ++L +++ G GKR FR N + G++ + + A+ V Sbjct: 790 MPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVV 849 Query: 845 -FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 F + D ++Q++LVS GT+ R+ V +I I SR+ +GV++ Sbjct: 850 GFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 893 >gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 853 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 329/894 (36%), Positives = 523/894 (58%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 46 ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA RYTE RL Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T IP HNL Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS +IR + Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ +R + Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E I+ S Sbjct: 450 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK++ L Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G +D + L I +T + +L SS ++K + ++P GS Q +G Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E I+ ++P+ ++ ++N +++ + GN+++ LS F I ++GKIA Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 676 Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +KL D ++S D IL+ + G R+ I +R +GR ++GV+GI L +G Sbjct: 677 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I C+ Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 FI ++S+KGFGK+T ++R++ R+ KG+ + D K G LV + + +N++ Sbjct: 744 -FDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNEEA 799 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 800 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100] Length = 836 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 345/888 (38%), Positives = 516/888 (58%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 15 VEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPERGYVKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG YHPHG+ AIY L RMAQ W++R L++GQGNFGS D AA RYTECR+ Sbjct: 75 KPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTECRM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ ++ ++TVDF+PNYDG +EPV+L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 135 TPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSGGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D ++DN L+A M+ ++GPDFPT +I+G GI++AY TGRGSI +R Sbjct: 195 NELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDKGIQDAYRTGRGSIRMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R+ IV+TE+PYQVN ++ IAE VR+ +I IA + DE SDR G R+ Sbjct: 255 GVTSIEE-EGNRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGIARIDDESSDRVGLRI 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 314 VVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVKHQIEVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR S + AR + L Sbjct: 374 RRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIAR-------------EGL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+D + E+Q AILE++L RL L R I + L + I + DI Sbjct: 421 IDLLD-------------IDEIQANAILEMQLRRLAALERQKIIDALAEIEETIADLKDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + ++ RRT+IV D+ +ED I RE++VVT++ GY KR Sbjct: 468 LARPERQRDIVRGELEEIVEKFGDERRTKIVAASGDVSEEDLIARENVVVTITSTGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR+QRRGGKG G ++ +D V F+ STH ++LFF++ G VY+ + + LP S Sbjct: 528 TKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEAS 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE+I ++ +S + Y+V AT HG V++++L+D+ Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSYEDAPYLVLATSHGRVKKSRLTDYDSPRS 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L+ D ++ + CT E+D+LL ++ GQ +RF +R GR + GV+G+ Sbjct: 645 GGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVLRPM-GRATAGVKGMR 703 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 + DQ++++ +V Sbjct: 704 FREDDQLLALTVV----------------------------------------------- 716 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 QE + ++ + G+GKRT ++ R G G+ K + G L+ V Sbjct: 717 --QE----DAYLFVATSGGYGKRTKMEEYPAKGRGGLGVVTFKYDK--KRGKLIGALTVQ 768 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+ ++ G +IR VN+IR SRAT GV + KD +V+V+R Sbjct: 769 EDDEILAITSAGGVIRTEVNQIRHTSRATMGVRLVDLGKDVELVAVDR 816 >gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1] Length = 891 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 353/907 (38%), Positives = 516/907 (56%), Gaps = 92/907 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D + LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQI 668 ARG + +LS E+I +M S++ Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL----RSYDGAEYLLLATRKGMVKKTALKAYDSS 654 Query: 669 NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRG 726 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G Sbjct: 655 RQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTG 714 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D+++SM+I+ H+D D+R Sbjct: 715 MKFRGDDELLSMSII-HSDMPEDDR----------------------------------- 738 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV Sbjct: 739 ------------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLV 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEI 902 V++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 785 VSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEV 844 Query: 903 VDEAEST 909 DE+ T Sbjct: 845 ADESVET 851 >gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 868 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 329/894 (36%), Positives = 522/894 (58%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 61 ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 120 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA RYTE RL Sbjct: 121 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 180 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T IP HNL Sbjct: 181 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 240 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS +IR + Sbjct: 241 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 300 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K Sbjct: 301 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 360 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ +R + Sbjct: 361 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 420 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 421 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 464 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E I+ S Sbjct: 465 ----------TYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 514 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK++ L Sbjct: 515 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDE 574 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G +D + L I +T + +L SS ++K + ++P GS Q +G Sbjct: 575 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 634 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E I+ ++P+ ++ ++N +++ + GN+++ LS F I ++GKIA Sbjct: 635 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 691 Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +KL D ++S D IL+ + G R+ I +R +GR ++GV+GI L +G Sbjct: 692 LKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 750 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I C+ Sbjct: 751 KIIGA--------------CFA-------------------------------------- 758 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 FI ++S+KGFGK+T ++R++ R+ KG+ + D K G LV + + +N + Sbjct: 759 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 814 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 815 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868 >gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] Length = 862 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 352/899 (39%), Positives = 521/899 (57%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ YVK A Sbjct: 12 IQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTECR+ Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG QEP +L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DNP+ L A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R+ IV+TE+PYQVN M+ IAE V +I IA + DE SDR G R+ Sbjct: 252 GVTSIEEV-GNRQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L++A RAH+L GL A+ LDEV+ +IR SP E AR LMQ Sbjct: 371 RRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREGLMQ----------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +G D E+Q AIL +RL RL L R I +EL + I + DI Sbjct: 420 ---------LLGVD------EIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + ++ RRT+IV D+ DED I RE++VVT++ GY KR Sbjct: 465 LAREERQREIVHDELEEIVEKYGDERRTQIVAASGDVSDEDLIARENVVVTITATGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP Sbjct: 525 TKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V AT+ G V++++L+D+ Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + + +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ++SM++V +D + +R I EE T Sbjct: 702 RGDDQLLSMSVV----SDGQFLLVATSGGYGKRTAI----EEYTPQ-------------- 739 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G G T F+ + + GK I A V + Sbjct: 740 --------------GRGGLGVMT----FKYTPKRGKLIAAISVDE--------------- 766 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I ++ G ++R VN+IR +SRAT GV + + A D +++++R E + ++A++ Sbjct: 767 DDEIFAITSAGGVVRTEVNQIRPSSRATMGVRLVNLADDVELLAIDRNVEDDGEEDAQA 825 >gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08] Length = 891 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 352/903 (38%), Positives = 515/903 (57%), Gaps = 87/903 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + +PD L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIAELV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G + +LS E+I +M S + Y++ AT+ G V++ L + Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTL---RSYEDAEYLLLATRKGMVKKTALKAYDSSR 655 Query: 670 RSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 ++G IA+ + D E++ E C+ +D+LL ++ GQ +RF ++ + GR + GV G+ Sbjct: 656 QAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+++SM+I+ H+D D+R Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV V Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ D+II + G + R V+E+ R+T GV F + + + VS+ + V+E Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVK-FVSVRGKDAVSIIALNPEHAVEEKV 844 Query: 908 STE 910 + E Sbjct: 845 TEE 847 >gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2] gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1] gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3] Length = 891 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 352/903 (38%), Positives = 515/903 (57%), Gaps = 87/903 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + +PD L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIAELV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASDDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G + +LS E+I +M S + Y++ AT+ G V++ L + Sbjct: 599 GRDAKGGHVAGLLSFLPDEKIAQVMTL---RSYEDAEYLLLATRKGMVKKTALKAYDSSR 655 Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ + GR + GV G+ Sbjct: 656 QAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGRATSGVTGM 715 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+++SM+I+ H+D D+R Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV V Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGLGIKAMALSE--ERGSLVGGLVV 785 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 ++ D+II + G + R V+E+ R+T GV F + + + VS+ + V+E Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVK-FVSVRGKDAVSIIALNPEHAVEEKV 844 Query: 908 STE 910 + E Sbjct: 845 TEE 847 >gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567] gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567] Length = 881 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/901 (39%), Positives = 515/901 (57%), Gaps = 96/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++GM G ++ + KCA Sbjct: 32 IEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDRAFNKCA 91 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG++HPHG++AIYDAL R+ Q W++R L GQGNFGS D AA RYTE ++ Sbjct: 92 RIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 151 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+PNYDG EP VL AR PN+L+NG GIAVGMATNIP HNL Sbjct: 152 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATNIPPHNL 211 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + NP+ L ALME I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 212 REVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGRGSITMR 271 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIA+L++E ++ I+DLRDE S R G R+ Sbjct: 272 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQRL 330 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+LN LY++T LQ FS NM+A+ P +L ++ +V + +V+V Sbjct: 331 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNHQMDVIV 390 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM D Sbjct: 391 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM----------DF 440 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E Q +AIL ++L RL L R I++ + L I E I Sbjct: 441 LD----------------IDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAI 484 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549 ++S R II +EL + + RRT I+ G DM ED I E++VVT++ GY+K Sbjct: 485 IASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITRGGYIK 544 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K + L Sbjct: 545 RTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEA 604 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ L N+L E I +M E + Y+V ATK G V++++LSD+ Sbjct: 605 GRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLSDYDTNR 661 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + E+DILL ++ G +RF + ++R GR++ GV G+ Sbjct: 662 TAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRSTSGVTGM 720 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 GD++IS +V+ Sbjct: 721 KFRDGDELISAQVVI--------------------------------------------- 735 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFP 846 E F+ V+E G+ KRT +R+ R+G GI+ V+K+ E GALV Sbjct: 736 --------PESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIK---VAKLVEGRGALVGGLI 784 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V++ND++++V G ++R V+E+ R T GV+ K + ++ + R ++ ++ ++ Sbjct: 785 VSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQK 844 Query: 907 E 907 E Sbjct: 845 E 845 >gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141] gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141] Length = 850 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 352/899 (39%), Positives = 527/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTEC+L Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + ++DNPD D L+A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ SG R+ IV+TE+P+QVN ++ IAE V +I I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVASGKIAGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLRYYVEHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN+A RAH+L GL A+ LDEV+ +IR SP + AR L K+L Sbjct: 371 RRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D +Q AIL ++L +L L R I +EL + EI + DI Sbjct: 421 LDVDD----------------IQADAILAMQLRKLAALERQKIIDELAEIEREIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + D+ RRT I+ D+ DED I RE++VVT++ GY KR Sbjct: 465 LAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIARENVVVTITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP G Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEGG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V AT+ G V++++L+D+ Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ++SM++V +D + SG + T++ EE Sbjct: 702 RGDDQLLSMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + G G T F+ + + GK I A V + +EI A+ + Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISVDEDDEIFAITSA----- 776 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 G +IR V++IR +SRAT GV + + A D +++++R E + ++A++ Sbjct: 777 ----------GGVIRTEVDQIRPSSRATMGVRLVNLADDVELLAIDRNVEEDGEEDAQA 825 >gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 868 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 329/894 (36%), Positives = 523/894 (58%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 61 ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 120 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA RYTE RL Sbjct: 121 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 180 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T IP HNL Sbjct: 181 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 240 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS +IR + Sbjct: 241 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 300 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K Sbjct: 301 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 360 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ +R + Sbjct: 361 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 420 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 421 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 464 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E I+ S Sbjct: 465 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 514 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK++ L Sbjct: 515 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 574 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G +D + L I +T + +L SS ++K + ++P GS Q +G Sbjct: 575 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 634 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E I+ ++P+ ++ ++N +++ + GN+++ LS F I ++GKIA Sbjct: 635 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIA 691 Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +KL D ++S D IL+ + G R+ I +R +GR ++GV+GI L +G Sbjct: 692 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 750 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I C+ Sbjct: 751 KIIGA--------------CFA-------------------------------------- 758 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 FI ++S+KGFGK+T ++R++ R+ KG+ + D K G LV + + +N++ Sbjct: 759 -FDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNEEA 814 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 815 IITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868 >gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] Length = 863 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 347/887 (39%), Positives = 516/887 (58%), Gaps = 91/887 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRR+L+ M G ++ YVK A Sbjct: 12 IQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNGYRPDRSYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG YHPHG+ AIYD L RMAQ WS+R L++GQGNFGS D PAA RYTECR+ Sbjct: 72 KPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NPD D L+ ME ++GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 192 NELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN L++++ LQS F NM+++ P L +L+ +VA + EV+V Sbjct: 311 VVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP E AR LM L Sbjct: 371 RRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDGLMS----------L 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + ++Q AILE++L RL L R+ I NELN L I + DI Sbjct: 421 LD----------------VDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + ++ RR++I+ D+ +ED I RE++VVT++ GY KR Sbjct: 465 LASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIARENVVVTITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEAS 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ E + Y+V AT G V++++L+D+ Sbjct: 585 RTARGQHVANLLEFQPEERIAQVIQIQTYEDAP---YLVLATAQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GDQ+++M++V D ++ + + ISE Sbjct: 702 REGDQLLAMSVV--RDGEF----------------------LLVATSGGYGKRTPISEYS 737 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 Q G G T F+ + + G+ I A V + +EI A+ + Sbjct: 738 TQ------------GRGGLGVVT----FKYTPKRGRLIGALAVEEDDEIFAITSA----- 776 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 G +IR VN+IR +SRAT GV + + D ++++++ Sbjct: 777 ----------GGVIRTEVNQIRPSSRATMGVRLVNLQDDVELLAIDK 813 >gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis] Length = 950 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 344/900 (38%), Positives = 521/900 (57%), Gaps = 72/900 (8%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 E + SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ NK + KCAR+ GEV+G Sbjct: 89 EAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFRKCARVVGEVLG 148 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFL 142 K+HPHG+ A+YDAL R+AQD+S+R+ L++G GNFGS+D DPPAA RYTECRLQ A+ L Sbjct: 149 KFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTECRLQAVASAML 208 Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202 L DL DTVDF PN+D S EP VL AR PN+L+NG GIAVG+AT IP HN+ EVV+G Sbjct: 209 LADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIPPHNMREVVEGL 268 Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAV-----ILGRTGIKNAYATGRGSIVIRGVSHIE 257 A+I NPDI + LM I PDFPTGA+ I+ ++ AY G+G I++R HIE Sbjct: 269 KALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKGGILMRAKIHIE 328 Query: 258 KTSGD---REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 S + +V+TE+PYQ NK+A++E+IA LV + ++D+RDESDR G RVV+E+ Sbjct: 329 DGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDESDRDGVRVVVEV 388 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KRG +AD++LNQL ++T++QS FS NMVAL G P TL L+ F++FR EVV RR + Sbjct: 389 KRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLKNFLQHFLSFRCEVVERRAR 448 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L +A+ R H++ G A+ +LD VV IR ASD + ++ Sbjct: 449 HDLLRAQQRLHLVDGFVTAMRDLDAVVHAIR-----------------QASDGAAALVVL 491 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 S + LS Q +L + L RLT L ++ E L +I + D+L + Sbjct: 492 RASPFG--------LSREQAEGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQ 543 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 R+L ++ E + + TPRRT I+ +G +++ ED I +V S GY+KRV Sbjct: 544 DRILQVVTSEAEELAAKFGTPRRTHIITDGEVELRHEDVIPNAPSLVVYSRRGYIKRVRP 603 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + AQ+RGG G++G ++++D + ++ V+ H +LFF++ G Y + + +P G+ A Sbjct: 604 DTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTA 663 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKLSDFIQINRS 671 G A+ +L ++ RI ++P ++ + VV T+ G ++R L F INRS Sbjct: 664 VGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRS 723 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G +AM + D + V C+ + +L+ G F I+ +R GR +VG + ++L+K Sbjct: 724 GLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITKLRRM-GRAAVGNKSMTLSK 782 Query: 732 GDQVISMAIV---LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 G +++MAI+ + A+ DE D I + EG +E Sbjct: 783 GTDIVAMAILPAGIVAEGPNDE-----------------DYLSIEGSHDMDYSEGKAAET 825 Query: 789 RCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + +EQ ++L V+++G GKRT +FR+ R+G GI+A ++ + + A+ Sbjct: 826 PAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRLNLGDRLAAVQDE 885 Query: 845 FPVNDNDQ----------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++L + +G L+RVPV ++ I SR KG + + + VV+ Sbjct: 886 SSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKGHRLVKVRQGDEVVAA 945 >gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303] gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9303] Length = 875 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 350/879 (39%), Positives = 523/879 (59%), Gaps = 71/879 (8%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I + EM SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ ++ Sbjct: 14 ESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRP 73 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNFGSVD DPPAA RY Sbjct: 74 YRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNFGSVDNDPPAAMRY 133 Query: 131 TECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 TE RLQ LL+D+ +TVD+ N+DGS QEP+VL AR P +L+NG GIAVGMATN Sbjct: 134 TESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLLNGSSGIAVGMATN 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E++DG A+I NP++ LM +I GPDFPTG ILGR+GI+ Y TGRGS+ Sbjct: 194 IPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSGIRETYLTGRGSVT 253 Query: 250 IRGVSHIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 +RGV++IE DR+ +++TE+PYQ NKAA++E+IAE+V +K++ I+D+RDESDR Sbjct: 254 MRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLEGISDIRDESDR 313 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+EL+R A V+LN L++ T LQS FS +M+AL +P TL +L+ F+ FR Sbjct: 314 DGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLLTLRKMLQVFLDFR 373 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 + V RRT+Y L KA +R H+L+GL +A+ LD ++ +IR + + TAR++L + Sbjct: 374 VDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTATARQQLQEHHG--- 430 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 L+E+Q AIL+++L RLT L D IR E L +I Sbjct: 431 -----------------------LTEIQADAILQMQLRRLTALEADKIRLEHEDLVTKIA 467 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 DIL R R+ +I+ EL ++++ PRRT I++ +ED D I E VV ++ Sbjct: 468 NYKDILGRRERVFALIEDELAKLREKHCLPRRTEILDLGGGLEDIDLIANERSVVLLTET 527 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+S + A RG +G++G + E+ V + H ++L FS G Y +R Sbjct: 528 GYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLFSDRGVSYALPAYR 587 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P S A+G ++ +L + + E IT+++ S ++ +++ TK G ++R LS F Sbjct: 588 VPQCSRTAKGTPVVQLLPIPREEAITSLLSV---ISFDDDTHLLMLTKGGFIKRTSLSAF 644 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723 +I +G IA+ L+ D + V + +L+ ++ G + F + +R GR + G Sbjct: 645 SKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCDEELRPL-GRTARG 703 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS--SV 781 VR ++L GD ++SM ++ AD + SL++D SV Sbjct: 704 VRAMNLRGGDSLVSMDVLPVELAD----------------------QVAKSLEDDPDDSV 741 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E + + ++L S G GKR FR+ R+G G+RA + E L Sbjct: 742 ETVVVSD--------GPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAIKFRR--EGDEL 791 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 V + + ++++LVS++G ++R ++I SRA GV Sbjct: 792 VGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGV 830 Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%) Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLG 596 +V + S LG KRVP++ +R Q+R G G + R E D + L ++ +L S G Sbjct: 753 LVASASGLG--KRVPVNQFRLQKRAGMGLRAIKFRREGDELVGLRVLGYGEELLLVSERG 810 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645 + + ++P Q+R + + L+ G+R++ ++ P D + Sbjct: 811 VIVRTSADKIP---QQSRAATGVRLQRLDAGDRLSEVVLVPPDSEDQDQ 856 Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L E+ ++ ++E G+ KR +F ++R +G +A S+ E A+ ND+D Sbjct: 513 DLIANERSVVLLTETGYLKRMPVSEFEATSRGTRG-KAGTRSQGEE--AVKLFISCNDHD 569 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894 ++L SD+G +P + SR KG V + ++E + S+ Sbjct: 570 TLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL 615 >gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana] Length = 935 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 364/911 (39%), Positives = 535/911 (58%), Gaps = 74/911 (8%) Query: 9 DEEEEKGITSVSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + E+ G V +T+ E +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M ++G+ Sbjct: 80 ENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGL 139 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR LI G GNFGS+D DPP Sbjct: 140 SSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPP 199 Query: 126 AAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTECRL+ LL DL ++TVDF PN+D S +EP +L AR PN+L+NG GIAV Sbjct: 200 AAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAV 259 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNLGE+VD A+I NP+ L L+E + GPDFPTG +I+G GI A+ TG Sbjct: 260 GMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAFRTG 319 Query: 245 RGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 RG +VIRG + IE + R I++ EIPYQ NKA+++EKIA+LV K + ++D+RDE Sbjct: 320 RGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDE 379 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIELKRG+ ++LN LYR T+LQS FS NMV + +P+ L +L+AF+ Sbjct: 380 SDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQAFL 439 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 FR VV RR ++ L++A++R H++ G+ + + NLDEV+ I R+ Sbjct: 440 DFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTI---------RKASSNALA 490 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 AS K+ LSE Q AIL++ L RLT L R+ E SL Sbjct: 491 AASLRKEF-----------------ELSEKQAEAILDISLRRLTALERNKFVEEGKSLRT 533 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541 +I + ++LSS+ ++L +I++E + +K++ PRR+ + + D+ED D I E+M++ Sbjct: 534 QISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEMLLA 593 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GYVKR+ + Q RG G+S +R D ++D + H VL+FS G VY Sbjct: 594 ISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSS 653 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 +++P S A G L+ ILSL+ GERIT+I+P E + + Y+V T +G +++ Sbjct: 654 PAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFAA---DQYLVMLTVNGYIKKVS 710 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 L+ F I +G IA++L DE+ V+ C+ + + + ++ G + P + IR GRN+ Sbjct: 711 LNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRAL-GRNT 769 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 G + L +GD+V SM I+ DA E K + Q+R Sbjct: 770 RGSVAMRLKEGDKVASMDII--PDALQKE---LDKTLEVQQR------------------ 806 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 Q +K ++L VSE G+GKR FR S + G+ S + + A+ Sbjct: 807 ---------QYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDCLAAV 857 Query: 842 VAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V F + + ++Q++LVS GT+ R+ V +I I SR +GV++ ++ S Sbjct: 858 FVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQSASL 917 Query: 897 IRESEIVDEAE 907 I ++ E E Sbjct: 918 ISAADADPEDE 928 >gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] Length = 821 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 366/886 (41%), Positives = 518/886 (58%), Gaps = 91/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I DEM+ SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M +MGV + K + Sbjct: 16 IEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMEEMGVTSRSGHRKSS 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIYDALARMAQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 76 SIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSVDGDPPAAMRYTEARM 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF NYD EPVVL AR PN+LVNG GIAVGM+TNIP HNL Sbjct: 136 APIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGASGIAVGMSTNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI------IRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 GEV+D + +IDNPD + L++ I+GPDFPTGA I+ R GI +AY GRG + Sbjct: 196 GEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIVNREGIWDAYTEGRGRLR 255 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R IE+T ++IVVTE+PYQ NKA +E+IAE V+E +I I D+RDESDR G R Sbjct: 256 VRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIEGIRDIRDESDRDGVR 315 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE KRG++ADV+ NQL + L++ FS+ +AL +P L +L+AFV R EVV Sbjct: 316 VVIECKRGSNADVVKNQLLEH-HLENTFSIISLALVDDQPRVLNLKELLEAFVGHRREVV 374 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR+++ L +A+DRAH+L G +A+ N+D+VV I+ S + + A L +++++ Sbjct: 375 RRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRDAAMAAL-RKAYD------ 427 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE Q I+ ++L LT + +I E + EI+ Sbjct: 428 -------------------LSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLET 468 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+ S LLG+IK EL +K E R+T ++E + ED I E++VV V+ YVK Sbjct: 469 ILNDESELLGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIAEEEVVVVVTEEDYVK 528 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+PLS + Q RGGKG G ++ D V+ +F STH +L F++ G VY+ KV+ LP Sbjct: 529 RMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEM 588 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG + +N+L LN GE IT ++ + + Y+ AT+ G V+R +S+F ++ Sbjct: 589 GRTARGTSAVNVLDLNDGEEITAVV----NTDDIDEGYLAMATEAGYVKRTAVSEFENVH 644 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 G A+ L+ D ++ VE + D+L+ TK G +RF S R GR++ GV GI L Sbjct: 645 AGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPM-GRSARGVNGIKL 703 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 +GD + + +D D D Sbjct: 704 -EGDDRATGLVAASSDDDRD---------------------------------------- 722 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +LTV++ G+GKRT ++R +R GKG+ D+ G + ++ V++ Sbjct: 723 ----------LLTVTKNGYGKRTPLSEYRRQSRYGKGL--VDIKTDERNGPVCSLDAVSE 770 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 +D ++++S+ G ++R V+EI R TKGVV+ S D+R+ ++ Sbjct: 771 DDGLVIMSESGQIMRTTVDEISTVGRNTKGVVVMSVDDDDRIAGID 816 >gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928] gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928] Length = 875 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 330/733 (45%), Positives = 465/733 (63%), Gaps = 38/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G K Y KCA Sbjct: 10 IDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG++ IYD L R+AQ WSLR++L++G GNFGS DP AA RYTEC++ Sbjct: 70 RVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAAMRYTECKM 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDFRPNYDG EPVVL AR+PN+LVNG GIAVGMATNIP+HNL Sbjct: 130 APLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMATNIPSHNL 189 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NP+ L+AL+E I+GPDFPTGA+I+GR GI++AY TGRGSI +R Sbjct: 190 REVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIVGRRGIEDAYRTGRGSITMR 249 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN + KIAELV++ ++ IAD+RDE S R G R+ Sbjct: 250 AVVNTEEING-RMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDESSSRTGQRL 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P +L ++ +V + +V+V Sbjct: 309 VIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDDVPRTLSLDAFIRHWVTHQIDVIV 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA++RAH+LVGL A+ +DEVV +IR SP + AR L++ Sbjct: 369 RRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIE----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AILE++L RL L R I E N L +I + I Sbjct: 418 ---------------LLTIDEIQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S R I+ +EL ++ D+ RR+++V DM ED I ED+VVT++ GY +R Sbjct: 463 LESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMSIEDLIPEEDVVVTITRGGYTRR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K LP + Sbjct: 523 TRTDLYRSQKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHELPDTA 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I ++ + E + Y+V ATK+G +++ L D+ Sbjct: 583 RDARGQHVANLLAFLPDEKIAQVLDLRDYEQTP---YLVLATKNGLIKKTPLKDYDSPRS 639 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 +G IA+ L DE+++ E + E+D+LL +K Q +RF + A+R GR + GV G+ Sbjct: 640 AGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPM-GRATSGVIGMR 698 Query: 729 LAKGDQVISMAIV 741 + D+++SM +V Sbjct: 699 FREDDELLSMDVV 711 Score = 44.3 bits (103), Expect = 0.089, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQF 799 ADY ++ QRR++S + + I+ D EG++S ++L +E Sbjct: 457 ADY---TAILESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMS---IEDLIPEEDV 510 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ +RT + +R R GKG++ + + + + F + ++ ++K Sbjct: 511 VVTITRGGYTRRTRTDLYRSQKRGGKGVKGAQLKQDDIVDHF---FVTTTHHWLLFFTNK 567 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 G + R +E+ +R +G + + DE++ V +R+ E Sbjct: 568 GRVYRAKAHELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYE 612 >gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] Length = 831 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 361/908 (39%), Positives = 535/908 (58%), Gaps = 100/908 (11%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE EK + SV + DEM+ SY+ YA++VI GRA+PD+RDGLKPVH+RIL+ M + GV N Sbjct: 10 DEVAEK-VKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAMHRSGVTSN 68 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + K + I G+ MG +HPHG+ +IYDALARMAQ +S+R LI+GQGNFGSVDGDPPAA Sbjct: 69 ASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSVDGDPPAAM 128 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ + +L D+ DTVDF+PNYDG +EP VL + PN+L+NG GIAVGM+T Sbjct: 129 RYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSSGIAVGMST 188 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+D V +IDNPD ++ LME ++GPDFPTGA I+GR I AY TGRG + Sbjct: 189 NIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIVGRNAIHQAYKTGRGRL 248 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +R ++ ++IV+TE+P+Q NKA ++++IA+ V + I I DLRDESDR G Sbjct: 249 RVRAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLRDESDRDGI 303 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVV+ELK+ A +V+ NQL + L+ FS+ +AL +P+ TL +L+ ++ R +V Sbjct: 304 RVVVELKQNAIPEVVENQLLNH-RLERTFSIISLALVDGQPKVLTLKELLQHYLDHRRDV 362 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR+++ L++A +RAH+L G A+ N+D+VV +IR + + + AR Sbjct: 363 VRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARS------------- 409 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 G GT SE Q I+ ++L LT L ++I E + I+ Sbjct: 410 -------------GLQGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLE 456 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL S LLG+IK+ELL +K++ RRT+IVE ++ ED I ED+ V V+ YV Sbjct: 457 TILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSEVTREDLIAEEDVFVVVTEQDYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P+ + AQ RGGKG G ++++D V+ +F +TH +L F++ G VY+ K + +P Sbjct: 517 KRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPE 576 Query: 609 GSPQARGKALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 S ARGK+ +NIL L++GE IT ++ F EDES + T+ G V+R +F Sbjct: 577 MSRTARGKSAVNILDLDKGEDITAVITTDEFEEDES------LSMVTQQGYVKRTAAKEF 630 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 I +G IA +L+ D+++ V+ D+L++TK G +RF + R GR++ GV Sbjct: 631 ENILSTGIIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREM-GRSARGVH 689 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L D+V+ M + A+ D D+ Sbjct: 690 GIRLDDDDEVVGM---VAANGDVDD----------------------------------- 711 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +LTV+ +G+GKRT ++R +R+GKG+ D+ + G + + Sbjct: 712 --------------LLTVTRRGYGKRTKLTEYRSQSRNGKGL--IDIKTGDRNGHVTEIK 755 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIV 903 V ++D ++L+S++G ++R+ +I R T GV + +D+RV SV+ I +E V Sbjct: 756 TVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAEAAEAV 815 Query: 904 -DEAESTE 910 D+AE+ E Sbjct: 816 PDDAETAE 823 >gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190] gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190] Length = 839 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 361/902 (40%), Positives = 520/902 (57%), Gaps = 96/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EMQ SY+ YA++VI+GRA+P + DGLKPVHRR+L+ M + G ++ YVKCA Sbjct: 21 IEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVKCA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS DP AA RYTECRL Sbjct: 81 RVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTECRL 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF NYDG QEPVVL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 141 SPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G V ++N + L+ALM I GPDFPT +I+GR GI++AY TGRGSI +R Sbjct: 201 REVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLIVGRDGIESAYRTGRGSIRMR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ + R +VVTE+PYQVN ++E IA +VR+ ++ IA++ DE SDR G R+ Sbjct: 261 SVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIGMRI 320 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LKR A A V+LN LY++T LQ+ F VNM+A+ P L +++ ++ + EV+V Sbjct: 321 VFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDGVPRTLRLDQVVRNYIRHQIEVIV 380 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR + L Sbjct: 381 RRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVAR-------------QGL 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+D + ++Q +AIL+++L RL L R I +EL + EI + DI Sbjct: 428 IDLLD-------------VDDIQAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDI 474 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + D+ RR+R+V D+ +ED I ED+VVT++ GY KR Sbjct: 475 LARPERQRQIVRDELTEIVDKHGDERRSRLVADDGDVTNEDLIAVEDVVVTITETGYAKR 534 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YRAQ+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 535 TKTDLYRAQKRGGKGVQGATLKQDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEAN 594 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+L E I +M + +++ Y+V AT+ G V++++L DF Sbjct: 595 RNARGQHVANLLALQPDEHIAQVMQIKDYQAAP---YLVLATRSGLVKKSRLEDFDSNRS 651 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G I + L DE++ C+ ++D+LL + GQ +RF +A+R GR + GV G+ Sbjct: 652 GGLIGINLRDEDELVGAVLCSADDDLLLVSAEGQSIRFTADDAALRPM-GRATSGVLGMR 710 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD+++S+ +V D++ + +G + T ++ D V+G Sbjct: 711 FNDGDRLLSIGVV------QDDKFVLVA--------TAGGYAKRTPIE-DYPVQG----- 750 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 G G T YD R G LV V Sbjct: 751 ----------------RGGKGVLTLQYDRR-------------------RGTLVGALIVG 775 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D++ ++ G +IR E+R A R TKGV + + + + +V R E D+A+ Sbjct: 776 IDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGDNATLQAVARNAE----DDADD 831 Query: 909 TE 910 +E Sbjct: 832 SE 833 >gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa] Length = 932 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 354/880 (40%), Positives = 508/880 (57%), Gaps = 78/880 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + E +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ K + KCA Sbjct: 83 VVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCA 142 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR LI+G GNFGSVD DPPAA RYTECRL Sbjct: 143 RVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRL 202 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L DL +DTVDF PN+D S +EP + R P +L+NG GIAVGMAT IP HN Sbjct: 203 DGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPHN 262 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VD A+I NP+ L L+E + GPDFPTG +I+G GI +AY +G+G IV+RG + Sbjct: 263 LGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAYRSGQGRIVVRGKT 322 Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 +E + R +++ EIPYQ NKA+++EKIAELV +K + I+D+RDESDR G R+VI Sbjct: 323 DVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIVI 382 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKRGA ++LN LYR T LQS FS NMV + +P++ L +L+AF+ FR VV RR Sbjct: 383 ELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQAFLDFRCSVVERR 442 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + L++A+ R H++ G+ + NLD VV IIR + S NA DL + Sbjct: 443 AMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIR-------------KASSNAIASADLRN 489 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q AIL++ L RLT L E SL +I + ++LS Sbjct: 490 -------------EFSLSEKQAEAILDISLRRLTLLEGKKFVEESKSLMEQITKLEELLS 536 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SR +L +I+QE + +K++ PRR+ + + +ED D I E+M++ +S GYVKR+ Sbjct: 537 SRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEMLLAISEKGYVKRM 596 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + + Q RG G+S +RD D ++D + H VL+FS G VY +++P + Sbjct: 597 KPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTR 656 Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A G LI LSL+ GERIT+I+P F ED+ +++ T +G +++ L+ F I Sbjct: 657 AAAGTPLIQFLSLSDGERITSIIPVSEFVEDQ------FLLMLTVNGYIKKVSLNSFSAI 710 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G IA++L DE+ V CT + + + ++ G + IR GRN+ G + Sbjct: 711 RSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRAL-GRNTRGGVAMR 769 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD++ SM I+ SL+ D V SE Sbjct: 770 LREGDKIASMDII------------------------------PASLQKDLEVASKDSEN 799 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPV 847 K ++L VSE G GKR F+ S + G+ + + + A+ AV F + Sbjct: 800 NN---KGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFEEDHLAAVFAVGFSL 856 Query: 848 ND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 + ++Q++LVS GT+ R+ V +I I SR +GV++ Sbjct: 857 TEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILM 896 Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 8/112 (7%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ +L +SEKG+ KR F + NR G V K+ + A+ + +D+++ Sbjct: 581 EEMLLAISEKGYVKRMKPNTFNLQNR---GTIGKSVGKLRDSDAMSDFIVCHAHDRVLYF 637 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905 SD+G + P +I +RA G + S + ER+ S+ I SE V++ Sbjct: 638 SDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSI--IPVSEFVED 687 >gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032] gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032] gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum ATCC 13032] gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum ATCC 13032] Length = 856 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 314/733 (42%), Positives = 465/733 (63%), Gaps = 38/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ YVK A Sbjct: 12 VNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDNGYRPDRSYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + + MG +HPHG+ AIYD L RMAQ WS+R L++GQGNFGS D PAA RYTECR+ Sbjct: 72 KPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TV+F PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NPD + L+A M+ ++GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 192 NELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKGIHDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G+R IV+TE+PYQVN ++ IAE VR+ ++V I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L++++ LQ+ F NM+++ P L +L+ +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLDQMLRYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L+KA +RAH+L GL A+ LDEV+ +IR SP P+ AR LM L Sbjct: 371 RRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEARTGLMS----------L 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E Q AIL ++L RL L R I +EL + +EI + I Sbjct: 421 LD----------------VDEAQADAILAMQLRRLAALERQKIIDELAEIELEIADLKAI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I++ EL + ++ RR++I+ D+ +ED I RE++V+T++ GY KR Sbjct: 465 LASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIARENVVITITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 525 TKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNYGRVYRLKAFELPEAS 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669 ARG+ + N+L GE+I ++ S+N+ Y+V AT HG V++++L D+ Sbjct: 585 RTARGQHVANLLEFQPGEQIAQVIQL----ESYNDFPYLVLATAHGRVKKSRLLDYESAR 640 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 G IA+ L+ D ++ C +E+D+LL ++ GQ +RF ++ GR + GV+G+ Sbjct: 641 SGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQLRPMGRATAGVKGMR 700 Query: 729 LAKGDQVISMAIV 741 DQ++SM++V Sbjct: 701 FRDNDQLLSMSVV 713 >gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 810 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 351/892 (39%), Positives = 537/892 (60%), Gaps = 90/892 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E GI V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRI++GM +G+ +K Y Sbjct: 7 ENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPDKSYR 66 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A + GEVMGK+HPHG+++IYDA AR+AQD+++R L++GQGNFG+VDGD PAA RYTE Sbjct: 67 KSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAPRYTE 126 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ K A +L D+ KDTVDF PNYD EP VL +R+PN+LVNG GIAVGMATN+ Sbjct: 127 MRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMATNMAP 186 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGE + + I+N DI+++ LM+ I+GPDFPTGA+ILG+ GI +AY TGRG I +R Sbjct: 187 HNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKIQVRA 246 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD-ESDRQGYRVV 311 + IE+ G R +IV+TEIPYQVNK ++ KIA+LV+ K I I+++RD S + G ++ Sbjct: 247 RAEIEEHKG-RYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTGIKID 305 Query: 312 IELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I+LKR A+ +V+LN LY+ T +Q F +N+ +NG +P+ L I+K +V + VV Sbjct: 306 IDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNG-EPKVLNLKEIIKYYVDHQRNVVR 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA RAH++ GL IA+ N+D +++I+R S + + A+ + + Sbjct: 365 RRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFG-------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+++Q +AIL++R+ RLTGL R+ + E L I + I Sbjct: 417 ------------------LTDIQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L ++ L I +EL +K++ RRT + D++ ED I ED+V+T++ GY+KR Sbjct: 459 LENKKLLDNTIIEELEEIKEKYSDLRRTVLAPDEGDIDSEDLIEEEDVVITLTEFGYIKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +P Y+ QRRGG G S + R+EDFV D++I STH ++LFF++ G VY K + +P S Sbjct: 519 MPEGTYKPQRRGGTGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESS 578 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 QA+G A+IN+L+L E +T ++P + + N +V ATK+G +++ S+F +I + Sbjct: 579 RQAKGTAIINLLNLEGDEFVTAVIPVRNVDENAN---LVMATKNGLIKKTSYSEFEKIRK 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 +G IA+ L+ D ++ V + ++I++ TK G +RF S +R GR ++GV+ I L Sbjct: 636 NGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNM-GRTAMGVKSIDLK 694 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+V+S I D++ Y+ +S +N ++E R Sbjct: 695 NDDEVVSFEI------PQDDK--YLLVIS----------------ENGFGKMTKMTEYRK 730 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 Q + G G T ++ + +SGK LV+ ++ + Sbjct: 731 Q------------NRAGVGLLT----YKATEKSGK---------------LVSAKVIDKS 759 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 D+I++++ G +IR+ I + R T GV + + KD VVSV + EI Sbjct: 760 DEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNI-KDSEVVSVAKYIGEEI 810 >gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana] Length = 917 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 359/894 (40%), Positives = 519/894 (58%), Gaps = 92/894 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++S DE I + E SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G Sbjct: 93 VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 149 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DP Sbjct: 150 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 209 Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIA Sbjct: 210 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 269 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY T Sbjct: 270 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 329 Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG +V+RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RD Sbjct: 330 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 389 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF Sbjct: 390 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 449 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I + + +A L Sbjct: 450 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 505 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S Y LSE Q AILE+ L RLT L R +E +SL Sbjct: 506 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 543 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540 +I + +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ Sbjct: 544 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 603 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 VS GYVKR+ + Q RG G+S +R +D ++D + H VLFFS G VY Sbjct: 604 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 663 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 + +++P S A G L+ ILS+++GER+T+I+P F ED Y++ T +G + Sbjct: 664 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 717 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F I +G IA++L+S DE+ V C+ ++ + + ++ G +R + Sbjct: 718 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 777 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 RN+ GV + L D++ SM I+ SL+ Sbjct: 778 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 806 Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 D EE+ ++ L +Q ++L V E G+GKR FR S + G+ V Sbjct: 807 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVG 859 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK---GVVIFS 884 + + VF ++Q++LVS GT+ R+ V +I I SR + V +FS Sbjct: 860 --SGFSPFLVVF---SDEQVVLVSQSGTVNRIKVRDISIQSRRARYSLHVTVFS 908 Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ++ VSEKG+ KR + F + +R G V K+ A+ + +D ++ Sbjct: 599 EEMLMAVSEKGYVKRMKADTFNLQHR---GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFF 655 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 SD+G + +I SR G V I S ++ ERV S+ + E Sbjct: 656 SDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSE 701 >gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S] gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi] gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S] gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] Length = 839 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 329/749 (43%), Positives = 471/749 (62%), Gaps = 39/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + +E I V I EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR + MG YHPHG+++IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTECR+ A ++ ++ DTVDF PNYDG QEP VL +R PN+LVNG G Sbjct: 121 GNDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV + +DN + D L+A+ME ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGGQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +RGV IE++ QIV+TE+PYQVN ++ IAE VR+ +I I Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+V+ +KR A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + EV++RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM DL + + E+Q AIL ++L RL L R I + Sbjct: 421 GLM----------DL----------------LTVDEIQADAILAMQLRRLAALERQKIID 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL R I+K EL + ++ RRTRI+ D+ DED I R Sbjct: 455 ELAEIEREIADLKDILEKPERQRQIVKDELSEIVEKYGDDRRTRIIAADGDVTDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ ED V + F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTRTDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTK 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ E+I +I+ +S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIQSIIHI---KSYEDAPYLVLATRNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V++++L+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 632 LVKKSRLADF-DSNRSGGIVAINLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ + D+++S+ +V Sbjct: 691 LRPM-GRATSGVQGMRFNQDDELLSLNVV 718 Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 7/103 (6%) Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +++ + G K++ DF SNRSG GI A ++ +E LV + +D ++LVS Sbjct: 623 YLVLATRNGLVKKSRLADFD-SNRSG-GIVAINLRDEDE---LVGAVLCSSDDDLLLVSA 677 Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899 KG IR + +R RAT GV +D+ ++S+ +RE Sbjct: 678 KGQSIRFAATDEALRPMGRATSGVQGMRFNQDDELLSLNVVRE 720 >gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] Length = 875 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 350/890 (39%), Positives = 515/890 (57%), Gaps = 96/890 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G + Y KCA Sbjct: 26 VDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPERSYNKCA 85 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG+ AIYDAL R+ QDW +R L GQGNFGS D AA+RYTE ++ Sbjct: 86 RVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSPGNDGAAAQRYTETKM 145 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 146 APLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 205 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + NP+ L LM ++GPDFP+GA+ILG GI +AY TGRGSI +R Sbjct: 206 REVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMILGTKGISDAYRTGRGSITMR 265 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PY N + KIAELVR+ +I IAD+RDE S R G R+ Sbjct: 266 AVVNVEEIQG-RTCLVVTELPYMANPDNLAVKIAELVRDGKISGIADMRDETSGRTGQRL 324 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS FS NM+A+ P L G ++ +V + EV+V Sbjct: 325 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLPLDGFIRHWVTHQIEVIV 384 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA + AH+L GL A+ LDEV+ +IR S E AR LM+ L Sbjct: 385 RRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARDGLME----------L 434 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +D Q RAIL+++L RL L R I++ L I E I Sbjct: 435 LDIDED----------------QARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKAI 478 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 ++ +R I+ +EL + + RRT+++ G DM ED I E+MVVT++ GYVK Sbjct: 479 IADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYDGDMSVEDLIPEEEMVVTITRGGYVK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + YR+Q RGGKG G +R +D V F+ STH +LFF++ G VY+ K + L Sbjct: 539 RTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTSTHNWLLFFTNHGRVYRTKCYELAEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+++ E I ++ + + Y++ AT++G V++ +L D+ Sbjct: 599 GRDAKGQHVANVMAFQPDEHIAQVLDL---RTYQDAAYLMLATRNGLVKKTRLEDYDTNR 655 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D++L ++ GQ VRF +A+R GR + GV G+ Sbjct: 656 TAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQSVRFTATDTALRPM-GRATSGVTGM 714 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +GD++++ +V ++DS Sbjct: 715 KFREGDELLAADVV----------------------------------RDDS-------- 732 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFP 846 ++ TV+ +G+ KRT+ ++R+ +R G GI+ V+K+N E G LV Sbjct: 733 -----------YVFTVTNEGYAKRTTVAEYRVQSRGGLGIK---VAKLNEERGELVGALI 778 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 V++ D++++V G ++R V+++ R T GV+ K + +++V + Sbjct: 779 VDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIFAKPDKKDHIIAVAK 828 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 20/167 (11%) Query: 746 ADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS-------SVEGNISEERCQELK 794 A+ D I K + A QR+++S + +EI + D +G++S ++L Sbjct: 466 AELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYDGDMS---VEDLI 522 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +E+ ++T++ G+ KRT ++R R GKGI+ ++ + + F + ++ ++ Sbjct: 523 PEEEMVVTITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHF---FVTSTHNWLL 579 Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898 ++ G + R E+ A R KG + + DE + V +R Sbjct: 580 FFTNHGRVYRTKCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLR 626 >gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1] gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1] gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3] gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1] gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3] gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2] gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1] Length = 891 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 353/906 (38%), Positives = 513/906 (56%), Gaps = 90/906 (9%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI V I DE+QN+YL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KC Sbjct: 25 GIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKC 84 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 +R+ G+VMGKYHPHG++AIYD L R+AQ W++R L++GQGNFGS D AA RYTEC+ Sbjct: 85 SRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECK 144 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + A ++ D+ +DTVDF+PNYD EPVVL +R+PN+LVNG GIAVGMATNIPTHN Sbjct: 145 MAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHN 204 Query: 195 LGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 L EV + + +P+ L+A ME I+GPDFP GA+I+GR GI++AY TGRGS+ + Sbjct: 205 LREVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTM 264 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309 R V +E+ R+ +VVTE+PY N + KIA+LV RI IAD+RD+S R G R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI LKR A V++N LY++T+LQ F NM+AL P L + ++ + EV+ Sbjct: 325 LVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALVDNVPRTLRLDQFISYWIDHQMEVI 384 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT+Y L +A AH+ L A+ LDEV+ +IR SPN E A ++ +++ Sbjct: 385 RRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAA----------STGLQE 434 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+D + E+Q RAIL+++L RL L R I + L L I + Sbjct: 435 LLD----------------IDEIQARAILDMQLRRLAALERQKIIDRLEELERLIADYKA 478 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 IL+S R II EL + D+ RRTRI+ D +ED I +D+VVT++ GY K Sbjct: 479 ILASEDRQREIISTELAEIVDKYGDERRTRIIAADGDFSEEDFIPDDDVVVTITRGGYAK 538 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YR Q+RGGKG G +R +D V LF + H +LFF+++G VY+ KVW+LP Sbjct: 539 RTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEA 598 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ARG + +LS E+I +M S Y++ AT+ G V++ L + Sbjct: 599 GRDARGGHVAGLLSFLPDEKIAQVMTL---RSYDGAEYLLLATRKGMVKKTALKAYDSSR 655 Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 ++G IA+ + DE++ E C+ +D+LL ++ GQ +RF ++ GR + GV G+ Sbjct: 656 QAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQAIRFSAGDDQLRPMGRATSGVTGM 715 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 D+++SM+I+ H+D D+R Sbjct: 716 KFRGDDELLSMSII-HSDMPEDDR------------------------------------ 738 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ T + G+ KRT+ ++R R G GI+A +S+ E G+LV V Sbjct: 739 -----------FVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSE--ERGSLVGGLVV 785 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV----VSVERIRESEIV 903 ++ D+II + G + R V+E+ R+T GV S + V V+ E E E+ Sbjct: 786 SEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVA 845 Query: 904 DEAEST 909 E+ T Sbjct: 846 YESVET 851 Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%) Query: 532 CIVREDM------VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVS 584 I+ DM V T + GY KR +S YR Q RGG G + + +E + +VS Sbjct: 727 SIIHSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVS 786 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIMPFPEDESS 642 ++ + G + + V +P A+G++ + + +S+ G+ ++ I PE Sbjct: 787 EADEIIAIKTSGQITRSAVSEVP-----AKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVE 841 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690 Y T G+ + + SG + + D+ D+ +V+T Sbjct: 842 EEVAYESVETVEGDATQAQ---------SGGVVRRSDTVDDDRAVDTA 880 >gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231] gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002] gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19] Length = 854 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 346/888 (38%), Positives = 514/888 (57%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 14 IHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQDW++R L++GQGNFGS D PAA RYTECRL Sbjct: 74 RPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG QEP VL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 134 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NP L+A M ++GPDFPT I+G GI +AY TGRGSI +R Sbjct: 194 NELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGSQGINDAYTTGRGSIRMR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN M+ IAE VR+ ++ I+ + DE SDR G R+ Sbjct: 254 GVTSIEE-EGSRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVGMRI 312 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L+ +V + EV+V Sbjct: 313 VVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVTHQIEVIV 372 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L +A RAH+L GL A+ LDEV+ +IR S + AR L Sbjct: 373 RRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVAR-------------SGL 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL + + E+Q AIL ++L RL L R I +EL + IEI + DI Sbjct: 420 IDL-------------LTIDEIQADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDI 466 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + + RRT+I+ D+ +ED I RE++VVT++ GY KR Sbjct: 467 LAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIARENVVVTITSTGYAKR 526 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 527 TKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEAS 586 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L ERI ++ +S + Y+V AT G V++++LSD+ + NR Sbjct: 587 RTARGQHVANLLEFQPEERIAQVIQL---QSYEDAPYLVLATAQGRVKKSRLSDY-ESNR 642 Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 SG IA+ L D+++ C+ ++++LL ++ GQ +RF ++ GR + GV+G+ Sbjct: 643 SGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMR 702 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 DQ+++M +V +DA Sbjct: 703 FRGDDQLLAMTVV-RSDA------------------------------------------ 719 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 ++L + G+GKRTS ++ R G G+ + G L+A V+ Sbjct: 720 ----------YLLVATSGGYGKRTSLEEYSQQGRGGLGV--VTFKYTPKRGKLIAAVVVD 767 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++DQI ++ G +IR VN+IR +SRAT GV + + +++++R Sbjct: 768 EDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLAIDR 815 >gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 808 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 344/866 (39%), Positives = 503/866 (58%), Gaps = 86/866 (9%) Query: 20 SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79 +I DE+ NSY+ Y+++VI+GRAIPDLRDGLKPV RRILFGM ++G+ N+ + K ARI G Sbjct: 9 NIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKKSARIVG 68 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 EVMGK+HPHG+AAIYDAL RMAQ +S+R L+EGQGNFGS+D DPPAA RYTE R++ A Sbjct: 69 EVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEARMETLA 128 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 LL D+ K+TV PN+DGS EP VL + PN+L+NG GIAVGM T+IP HNL E++ Sbjct: 129 EELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPHNLVEII 188 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 D +I +P+ + L+ I+GPDFPTG +I+ I + Y G+G I +R ++ IE+ Sbjct: 189 DAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDAASIPSIYQEGKGRITVRAIAEIEE- 247 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 SG QIVV+EIPY +KA ++E+I + R + I ++RDESD++G RVVIELKRGA Sbjct: 248 SGGSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIELKRGAD 307 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +V+LN L+++T LQ+ FSVNM+ ++ K P L IL+ F++ R V+ +T+Y L Sbjct: 308 PNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSKTEYDLE 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 +A RAH++ GL A ++D VV IIR S N E A + LM+ Sbjct: 368 QASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLME------------------- 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 T+ +++ Q+ AIL++R+ +LTG+ + + NE L +I E IL+S ++ Sbjct: 409 -------TLEVTQEQSSAILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILASDEKVY 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 GII EL +K + RRTRI G D ED I ED+V+ V+ GY+K PL YR Sbjct: 462 GIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKSTPLESYR 521 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 Q RGGKG GV DEDFV ++ + + + +S G Y + S ++GK Sbjct: 522 KQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKL 581 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 L N + ++ E + ++ ++E L V T+ G +++ + F+ + SG A+ Sbjct: 582 LANYIKIDPDENVQAVLSTRKEEVQGKQL--VITTRSGKIKKTEFEAFLNVRISGIKAIS 639 Query: 678 LDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L+ D ++ ++E+D I+++TK G +RFP+ +R GR++ GV GI L K D+V+ Sbjct: 640 LNEGDRVIDASLTSREDDTIIISTKNGMVIRFPLDQVRSM-GRSAAGVMGIRLKKNDEVV 698 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 IV A D R Sbjct: 699 GANIV----ASEDTR--------------------------------------------- 709 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 F+LT +EKG GKRT ++R NR G G++ ++ + +IG ++ VN +D++IL Sbjct: 710 --FLLTATEKGGGKRTCLSEYRSQNRGGLGVK--NIYGLEKIGKVIGTLVVNSDDEVILA 765 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI 882 + G IR+PV+++R R TKGV I Sbjct: 766 TKLGMSIRIPVSQVRPTGRVTKGVRI 791 Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 4/105 (3%) Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDIL 697 +S + +++ AT+ G +R LS++ NR G K L+ +++ +++++ Sbjct: 704 ASEDTRFLLTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLEKIGKVIGTLVVNSDDEVI 763 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 L TKLG +R P+S +R GR + GVR + L D SMA+V+ Sbjct: 764 LATKLGMSIRIPVSQVRP-TGRVTKGVRIVDLKDNDIAASMAVVV 807 >gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis] gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] Length = 911 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 335/900 (37%), Positives = 534/900 (59%), Gaps = 91/900 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 ++E G+ +++ M+ S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ + Sbjct: 72 DKEINGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTA 131 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGSVDGD AA R Sbjct: 132 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMR 191 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A ++D + K+TVDF NYD + +EPVVL +R+PN+LV+G GIAVGMATN Sbjct: 192 YTEARMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATN 251 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE +D A+ NP+I++ LME I+ PDFPTG +I + G+ AY+TGRGSI Sbjct: 252 IPPHNLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIFNKKGLIEAYSTGRGSIT 311 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR +HI++ S + +I+VTEIPY+V K ++EKI+EL+++K+I IAD RDES+R G R Sbjct: 312 IRSKAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIR 371 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+ +++LN L++ T LQS +S NM+AL +P+ L L+ ++ + EVV Sbjct: 372 IVIDIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNEPKLLNLKACLEVYLKHQIEVV 431 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR K+ L K R RAH+L GL I + N+D V++II+ S + A+ +L Q ++N Sbjct: 432 SRRLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQ-AFN------ 484 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+QT+AI++++L RLTGL + + ELN + I + Sbjct: 485 -------------------LSEIQTKAIVDMKLGRLTGLAIEKMNEELNEVHERIANYIK 525 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548 IL + L+ +I +EL +K+ RR+ I + L +++ED I + D+V+T+++ GY+ Sbjct: 526 ILGDHNLLINLIIEELQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYI 585 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + YR QRRGG G S +D + D+ + +THT +L F+ L VY+ + +P+ Sbjct: 586 KRLDIEEYREQRRGGVGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPV 645 Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G+ Q++G ++N++ S+ + E++ I+P E N Y++ ATK G V++ F Sbjct: 646 GTKQSKGIPIVNVIPSIQKNEKVIKILPINE---YKQNEYLLTATKKGIVKKTPTILFES 702 Query: 668 INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 INR+GKIA + D D+++ E++I + + RF + IR GR + GV+G Sbjct: 703 INRNGKIAFAIRDDDDKLIDALIVKDEDEIFIAASNNKICRFDSNEIRSM-GRMAYGVKG 761 Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 I + D V+S++ SS +G Sbjct: 762 IKIDDVEDNVVSVS---------------------------------------SSNQG-- 780 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 ++I ++ ++G+GK T + FR + R G+ + + K G L+ Sbjct: 781 ------------KYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLNEEK---SGKLIYAA 825 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIVD 904 V+ + +I+++ G IR + ++ I R TKGV + + + +V+ +I + ++ D Sbjct: 826 TVHGVEDLIVLTSDGVAIRFSLKDVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDLED 885 >gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] Length = 843 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 322/729 (44%), Positives = 474/729 (65%), Gaps = 30/729 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K Y K A Sbjct: 9 ITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG GIAVGM TNIP HNL Sbjct: 129 SKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ +++N D LME + GPDFPTG +++G++GI+ AY TGRG+I++R Sbjct: 189 SEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTIILRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G RVVI+++ Sbjct: 249 IETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEVV RRT++ Sbjct: 309 RDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEVVRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 369 DLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y+ LS Q +AIL++RL RLTGL R+ + +E + I + DIL+ Sbjct: 412 -NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++++ RRT ++ G +L +EDED I ED++VT++H GY+KR+P S Sbjct: 463 RIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGG+G G+ + ++DF+ L STH +LFF++ G VY+ K + +P S A+ Sbjct: 523 EFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDFIQINRSG 672 G +IN+L ++ GE I ++ +N Y+ F T G +R +++F+ I +G Sbjct: 583 GIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG 642 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE+++V +I++ T G + F +R GR++ GVRGI L + Sbjct: 643 LKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVRGIRLREN 701 Query: 733 DQVISMAIV 741 D V+ A++ Sbjct: 702 DYVVGSAVL 710 Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 37/294 (12%) Query: 625 NQGERITTIMPFPEDE------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----- 673 N+G R M ED+ S+ + ++F T G V R K + + +R+ K Sbjct: 528 NRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVI 587 Query: 674 IAMKLDSRDEILSVETCTQEND--------ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +DS + I +V + N + TT G R P++ F S G++ Sbjct: 588 NLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAE---FMNIRSNGLK 644 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGN 784 I+L GD+VI++ I D + I H IS E+ S+ ++ + V G Sbjct: 645 AINLKDGDEVINVVI-----TDGHQNIIIGTHNGYA---ISFKEGEVRSMGRSATGVRGI 696 Query: 785 ISEER----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 E + E ++ ++EKG+GK+T + ++ I R GKGI+ ++++ N G Sbjct: 697 RLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GP 754 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L + V N+ ++L++D+G +IR V+ + R+T GV + T ++ +V ++ Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATM 808 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR + +F+ NR G+GI+ V + + I LV+ + +D ++ ++ Sbjct: 507 MVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVS---TSTHDVLLFFTNA 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884 G + R+ EI SR KG+ + + Sbjct: 564 GKVYRMKGYEIPEYSRTAKGIPVIN 588 >gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180] gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180] Length = 1386 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/808 (44%), Positives = 483/808 (59%), Gaps = 74/808 (9%) Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162 D LL G SVDGDPPAA RYTE R+ + A LLDDL K+TVDF PNYD + Sbjct: 615 DHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTEH 674 Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222 EP VL AR+PN+LVNG GIAVGMATNIP HNL EV+D C+A+IDNP + LD LMEI+ G Sbjct: 675 EPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVPG 734 Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRG--VSHIEKTSGDREQIVVTEIPYQVNKAAM 280 PDFPT +I G GI+ AY TGRG V+R + +K SG RE IV+TEIPYQVNKA + Sbjct: 735 PDFPTAGLINGVRGIREAYRTGRGRCVMRARATTETQKRSG-REAIVITEIPYQVNKARL 793 Query: 281 LEKIAELVREKRIVDIAD--LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338 LE+IAELV+EK+I IA LRDESD+ G R+VIELKR ++V+LN LY++T LQ +F Sbjct: 794 LERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFG 853 Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398 +NMVAL +P L IL+ F+ R +VV RRT Y L KARDRAHVL G AIA+AN+D Sbjct: 854 INMVALVDGQPLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANID 913 Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI-------DDSSYTIG-SDGTMYLS 450 EV+ I+ + NP AR LM+R W + +++ ++ G SD LS Sbjct: 914 EVIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRLS 973 Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510 E Q +AIL+L+L RLTGL +D I E + I L ILS RL+ +I++EL++V+D Sbjct: 974 ERQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVRD 1033 Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570 + RRT I D+ ED I ED VVT+SH GYVK P+S Y+AQ+RGGKG+S Sbjct: 1034 QFGDERRTEIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQKRGGKGKSATA 1093 Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630 +++EDF+ +F+ ++H +VL FSS G VY KV+ LP ARG+ ++N+L L GERI Sbjct: 1094 IKEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNLLPLEAGERI 1153 Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690 TT++P + E + +V AT G V++ L DF + G IA+ L DE+L T Sbjct: 1154 TTLLPVRDYE---DGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDL-REDELLVGATI 1209 Query: 691 TQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 T E D++L T G+ VRF S +R GR + GVRG+ L +G +V +A+V D Sbjct: 1210 TGGEQDLMLFTSAGKAVRFSESHVRSM-GRAAHGVRGVMLQEGQRV--IALVAPED---- 1262 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 G T +L+V+E G+G Sbjct: 1263 -----------------GGT------------------------------VLSVTENGYG 1275 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KRT F R +G+ A D ++ N GA V V+ D+I+L++D GTLIR V++ Sbjct: 1276 KRTDVDQFPTKGRGTQGVIAIDTAERN--GAQVGAILVHPGDEIMLIADDGTLIRTSVDQ 1333 Query: 870 IRIASRATKGVVIFSTAKDERVVSVERI 897 I + R TKGV + + + +R+V VERI Sbjct: 1334 IPVVGRNTKGVKLINLGEGQRLVFVERI 1361 Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 68/110 (61%), Positives = 88/110 (80%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G WN+ Y K Sbjct: 6 KEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNRAYRK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 AR+ G+VMGKYHPHG+AAIYD + RMAQ +SLR LL++GQGNFG GD Sbjct: 66 SARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGD 115 >gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168] Length = 853 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 328/894 (36%), Positives = 521/894 (58%), Gaps = 88/894 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ Y K A Sbjct: 46 ISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSA 105 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+A++Y+++ RMAQ +SLR L++G GNFGS+DGD AA RYTE RL Sbjct: 106 RIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARL 165 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++ +++ L K+TVDFRPNYD S EP VL A++PN+LV+G GIAVGM T IP HNL Sbjct: 166 SKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNL 225 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++ + NP I+++ L+ + GPDFPTGA I G+ GI AY TG+GS +IR + Sbjct: 226 GEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFIIRAKAK 285 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE + R +I+ EIPY+V K A++EK+A LVR K+I+ I D+RDES R G RVV E+K Sbjct: 286 IENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIK 345 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G S ++ILN+LY T LQ +S+NM+AL P+ L I ++ ++E+ +R + Sbjct: 346 KGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNF 405 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L Sbjct: 406 DLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAH---------------- 449 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+ QT+AI+E+RL RLT L + + NE+ L +EI E I+ S Sbjct: 450 ----------TYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPK 499 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L+ +I ++ +V + PRR+ I+ + +++ED I E ++++++ YVK++ L Sbjct: 500 KLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDE 559 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR Q RGG G +D + L I +T + +L SS ++K + ++P GS Q +G Sbjct: 560 YRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKG 619 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 ++N++ L + E I+ ++P+ ++ ++N +++ + GN+++ LS F I ++GKI Sbjct: 620 IPILNLIKLEKNESISNLIPWNQE---YDNHWLITVSAFGNIKKTALSAFRNITKNGKIG 676 Query: 676 MKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +KL D ++S D IL+ + G R+ I +R +GR ++GV+GI L +G Sbjct: 677 LKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGIKLEEGH 735 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I C+ Sbjct: 736 KIIGA--------------CFA-------------------------------------- 743 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 FI ++S+KGFGK+T ++R++ R+ KG+ + D K G LV + + +N + Sbjct: 744 -FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKK---AGNLVFISAIKNNQEA 799 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 I+ + KG IR+ ++ + I SR TKGV I + K + + +V I ++E + E Sbjct: 800 IITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 >gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] Length = 843 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 322/729 (44%), Positives = 474/729 (65%), Gaps = 30/729 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV K Y K A Sbjct: 9 ITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD AA RYTE R+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG GIAVGM TNIP HNL Sbjct: 129 SKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+ +++N D LME + GPDFPTG +++G++GI+ AY TGRG+I++R Sbjct: 189 SEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTIILRAKVD 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE+IV TE+PY VNKA ++E+IAEL R+KRI I D+ DESDR G RVVI+++ Sbjct: 249 IETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVR 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R SA V+LN LY+ T +Q+ F NM+A+ P+ +L IL+ ++ +EEVV RRT++ Sbjct: 309 RDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEVVRRRTEF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA RAH+L GL IA+ ++DE++ IIR S E A+ +LM Sbjct: 369 DLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y+ LS Q +AIL++RL RLTGL R+ + +E + I + DIL+ Sbjct: 412 -NNYS--------LSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYRDILAHTE 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 R+ II ELL ++++ RRT ++ G +L +EDED I ED++VT++H GY+KR+P S Sbjct: 463 RIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYIKRMPTS 522 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 ++ Q RGG+G G+ + ++DF+ L STH +LFF++ G VY+ K + +P S A+ Sbjct: 523 EFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAK 582 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDFIQINRSG 672 G +IN+L ++ GE I ++ +N Y+ F T G +R +++F+ I +G Sbjct: 583 GIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG 642 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+ L DE+++V +I++ T G + F +R GR++ GVRGI L + Sbjct: 643 LKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVRGIRLREN 701 Query: 733 DQVISMAIV 741 D V+ A++ Sbjct: 702 DYVVGSAVL 710 Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 137/294 (46%), Gaps = 37/294 (12%) Query: 625 NQGERITTIMPFPEDE------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK----- 673 N+G R M ED+ S+ + ++F T G V R K + + +R+ K Sbjct: 528 NRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVI 587 Query: 674 IAMKLDSRDEILSVETCTQEND--------ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +DS + I +V + N + TT G R P++ F S G++ Sbjct: 588 NLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAE---FMNIRSNGLK 644 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL-KNDSSVEGN 784 I+L GD+VI++ I D + I H IS E+ S+ ++ + V G Sbjct: 645 AINLKDGDEVINVVIT-----DGHQNIIIGTHNGYA---ISFKEGEVRSMGRSATGVRGI 696 Query: 785 ISEER----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 E + E ++ ++EKG+GK+T + ++ I R GKGI+ ++++ N G Sbjct: 697 RLRENDYVVGSAVLAPESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GP 754 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 L + V N+ ++L++D+G +IR V+ + R+T GV + T ++ +V ++ Sbjct: 755 LAGLVTVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATM 808 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KR + +F+ NR G+GI+ V + + I LV+ + +D ++ ++ Sbjct: 507 MVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVS---TSTHDVLLFFTNA 563 Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884 G + R+ EI SR KG+ + + Sbjct: 564 GKVYRMKGYEIPEYSRTAKGIPVIN 588 >gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana] Length = 899 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 359/894 (40%), Positives = 519/894 (58%), Gaps = 92/894 (10%) Query: 5 IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 ++S DE I + E SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G Sbjct: 75 VVSGDESR---IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELG 131 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR LI+G GNFGS+D DP Sbjct: 132 MSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADP 191 Query: 125 PAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PAA RYTECRL A LL DL +DTVDF N+D S +EP VL AR P +L+NG GIA Sbjct: 192 PAAMRYTECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIA 251 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 VGMATNIP HNLGE+VD A+I NP+ L L+E + PDFPTG +I+G G+ +AY T Sbjct: 252 VGMATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRT 311 Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 GRG +V+RG + +E R +++TEIPYQ NKA +++KIAELV K + I+D+RD Sbjct: 312 GRGRVVVRGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRD 371 Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 ESDR G RVVIELKRG ++LN LYR+T+LQS FS NMV + +P+ L +L+AF Sbjct: 372 ESDRNGMRVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAF 431 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + FR VV RR ++ L+ A+ R H++ G+ + + N+DEV+ +I + + +A L Sbjct: 432 IDFRCSVVERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSATAAL---- 487 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 S Y LSE Q AILE+ L RLT L R +E +SL Sbjct: 488 --------------QSEYG--------LSEKQAEAILEITLRRLTALERKKFTDESSSLT 525 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVV 540 +I + +LS+R+ +L +I+QE + +KD +PRR+ + + D+ED D I E+M++ Sbjct: 526 EQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLM 585 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 VS GYVKR+ + Q RG G+S +R +D ++D + H VLFFS G VY Sbjct: 586 AVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYS 645 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNV 657 + +++P S A G L+ ILS+++GER+T+I+P F ED Y++ T +G + Sbjct: 646 TRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDR------YLLMLTVNGCI 699 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 ++ L F I +G IA++L+S DE+ V C+ ++ + + ++ G +R + Sbjct: 700 KKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS 759 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 RN+ GV + L D++ SM I+ SL+ Sbjct: 760 -RNTKGVTAMRLKNEDKIASMDII------------------------------PASLRK 788 Query: 778 DSSVEGNISEERCQELKLKEQ----FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 D EE+ ++ L +Q ++L V E G+GKR FR S + G+ V Sbjct: 789 D-------MEEKSEDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVG 841 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK---GVVIFS 884 + + VF ++Q++LVS GT+ R+ V +I I SR + V +FS Sbjct: 842 --SGFSPFLVVF---SDEQVVLVSQSGTVNRIKVRDISIQSRRARYSLHVTVFS 890 Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ++ VSEKG+ KR + F + +R G V K+ A+ + +D ++ Sbjct: 581 EEMLMAVSEKGYVKRMKADTFNLQHR---GTIGKSVGKLRVDDAMSDFLVCHAHDHVLFF 637 Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 SD+G + +I SR G V I S ++ ERV S+ + E Sbjct: 638 SDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSE 683 >gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] Length = 845 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 347/842 (41%), Positives = 504/842 (59%), Gaps = 55/842 (6%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE + + + + I V I EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTETLPPAPDHDR--IEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 59 FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DP AA RYTE RL A +L D+ +DTVDF NYDG QEP VL +R+PN+LVNGG Sbjct: 119 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGS 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV +G V ++NP+ L AL+ I+GPDFPT A+ILG +G Sbjct: 179 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGS+ +R V +E+ + R +VV+E+PYQVN ++E IA LVR+ ++ I Sbjct: 239 IEDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGI 298 Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +D+ DES+ R G R+V+ +KR A A V+LN L+++T LQ F VNM+AL P L Sbjct: 299 SDIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I++ +V + +V+VRRT+Y L K +RAH+L GL A+ LDEV+ +IR SP+ + AR Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM L+D + E+Q AIL+++L RL L R I + Sbjct: 419 ALMT----------LLD----------------IDEIQAVAILDMQLRRLAALERQRIID 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + IEI + DIL R II+ EL+++ D+ RRT+I+ D+ DE+ I Sbjct: 453 ELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDKYGDDRRTKIIGFSGDVTDEELIAV 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 513 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+++ E+I ++ E + Y+V ATK G Sbjct: 573 GRVYRTKAYELPEANRNARGQHVANLMAFQPDEQIAQVIQIKNYEVAP---YLVLATKRG 629 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713 V++ KL+DF G IA+ L DE++ E+D+LL + GQ +RF + A+ Sbjct: 630 LVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEAL 689 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLIS 766 R GR + GV G+ GD+++ +++V + D Y +R ++ Q R Sbjct: 690 RPM-GRPTSGVMGMRFNDGDELLGISVVKEGKFLLVATDGGYSKRTA-IEDYPVQGRGGK 747 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 G + ++++D G + + E + ++ G RT + D R + R KG Sbjct: 748 G----VLTIQHDRK-RGRLVGALIVD---AEDELYAITSSGGVIRTPAGDVRKAGRQTKG 799 Query: 827 IR 828 +R Sbjct: 800 VR 801 >gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511] gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511] Length = 838 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 360/884 (40%), Positives = 507/884 (57%), Gaps = 84/884 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + + +V I DEM+ SY+ YA++VI GRA+P + DGLKPVHRRIL+ M +MGV + K Sbjct: 14 RAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAMHEMGVSSGSSHRK 73 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 + I GE MG YHPHG++AIYD L RMAQD+S+R L++GQGNFGS+DGDP AA+RYTE Sbjct: 74 SSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAQRYTEA 133 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + LL D+ KDTVDF NYD QEP VL A +PN+LVNG GIAVGM+TNIP H Sbjct: 134 RMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSSGIAVGMSTNIPPH 193 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+D + +ID+PD ++ LM+ ++GPDFPTGA I+GR I +AY TGRG I +R Sbjct: 194 NLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIVGRDAIYSAYKTGRGRIRVRAE 253 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E+ RE+IVVTE+P+Q NKA ++E+IAE V E I I+DLRDESDR G R+VIE Sbjct: 254 FEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLRDESDRDGVRIVIE 313 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRGA+ +V+ N+L L+ F V +AL +P +L L+ +VA R EVV RR+ Sbjct: 314 LKRGANTEVVKNRLLE-NHLERTFGVINLALVDGQPRVLSLKETLEEYVAHRREVVRRRS 372 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y L +A DRAH+L G AV N D+VV +IR N ET RS +++D D Sbjct: 373 EYDLEEAEDRAHILEGRLTAVENADDVVELIR---NSET-------RSDAKENLQDAYD- 421 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 S+ Q I+ ++L LT + +I E + EI+ IL S Sbjct: 422 ---------------FSQDQADHIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILES 466 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 LL +IK EL +K+E RRT I+E + ED I E++ V ++ YVKR+P+ Sbjct: 467 EEELLSVIKDELRGIKEEYGDERRTSIIEDQGTVTHEDLIPEEEVFVVMTEDDYVKRMPI 526 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + Q RGGKG G +++ D V+ +F +TH +L F++ G VY+ K + +P A Sbjct: 527 DQFDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTA 586 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RGK+ +NIL L+ GE IT I+ + ++ + +V AT HG V+R +F I +G Sbjct: 587 RGKSAVNILDLDPGEDITAIV---DTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGI 643 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA L+ DE++ VE D+++ T+ G +RF +R GRN+ GV GI L D Sbjct: 644 IAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAM-GRNARGVNGIKLQDDD 702 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V + AD Sbjct: 703 AVAGLVATDEADG----------------------------------------------- 715 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 Q +LTV+ G+GKRT ++R +R GKG+ D+ + G + AV V+D+DQ+ Sbjct: 716 ----QALLTVTRNGYGKRTRLSEYRTQSRYGKGL--IDIKTGDRNGPVTAVKAVDDDDQL 769 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +++S+ G ++R V+EI R T GV++ + V SV+ I Sbjct: 770 VMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASVDDI 813 >gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] Length = 809 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 355/883 (40%), Positives = 509/883 (57%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ + K Sbjct: 8 VVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKSG 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R ++ GQGNFGS+DGDPPAA RYTE +L Sbjct: 68 RIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAKL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF PNYD S +EP VL A P +L+NG GIAVGMATNIP HNL Sbjct: 128 HKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV AVIDNP+I L+ ++GPDFPTG +I G+ GI++AY TG+G +V+R Sbjct: 188 GEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARLS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE IVVTEIPY VNK+++LE++A LVR+K+I I+++RDESDR G R+V ELK Sbjct: 248 LETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG V++N+L+ T LQ+ F VN +AL G KP+ TL I++ F++ R+EVV RR +Y Sbjct: 308 RGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ N+DEV+ II+ S ++AR LM+R Sbjct: 368 DLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL +LT L I EL + I+E ++L S Sbjct: 413 -----------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSER 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L ++K E L + E RRT IV E D++ ED I +EDMVV VS G +KR+P+S Sbjct: 462 KILEVVKNETLELAKEYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG G + +D V+ LF+ STH +LF S+ G Y KV +P GS ++ Sbjct: 522 AYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQ 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK++ +++ L+ E+++ ++ E+ V T G +R + G I Sbjct: 582 GKSIRSLVQLSPDEQVSAVVSV---ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVI 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L+ D ++ + ++++ T+ G +R R GR + GV + L GD+ Sbjct: 639 AIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEPGDE 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V C G + E ++L Sbjct: 698 V-----------------C-----------------------------GAVPVEEGKDL- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L V+ G+GKR F R KG A VS G L AV V D ++ Sbjct: 711 ------LLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSA--RTGELAAVLSVEAKDDVM 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +V+ +G +I++ V +I + R GV + + K + VVSV+R+ Sbjct: 763 IVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRV 805 >gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens] Length = 813 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 352/870 (40%), Positives = 499/870 (57%), Gaps = 93/870 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + E + SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ K + KCA Sbjct: 30 IVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLSSKKPFKKCA 89 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR L+ G GNFGS+DGDP AA RYTECRL Sbjct: 90 RVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAAAMRYTECRL 149 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 Q + LL DL DTVDF P +DGS EP VL AR PNVL+NG GIAVGMATNIP HN Sbjct: 150 QGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVGMATNIPPHN 209 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD +A++ NP+ ++ LME + GPDFPTG ILG GI +AY G G + +RG + Sbjct: 210 LAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGHGRLTVRGKA 269 Query: 255 HIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE+ +R ++++E+PYQ NKAA++EKIA+LV K + ++D+RDESDR G R+VI Sbjct: 270 SIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDESDRFGMRIVI 329 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 E+KRGA V+LN LY+YT+LQ+ FS NMV + G +P+ L L+ FV FR V+ RR Sbjct: 330 EVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVEFRCSVIERR 389 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 K+ L +A DR H++ G+ I ++NLD VV+IIR + + A E +Q+ +N Sbjct: 390 AKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQA-SEGLQKGFN--------- 439 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 ++ Q A+L + L RLT L ++ E ++L EI + +L Sbjct: 440 ----------------VTPAQADALLAMPLRRLTSLESGKLKEEHDALTAEITDLKQLLE 483 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551 S+ R+L II++E L +K E TPRRT + +G ++ D D I E+ +VT+S GY+KR+ Sbjct: 484 SKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTLSEKGYIKRM 543 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 + AQ RG G+SG MR D ++D F+ TH VLFFS G VY + +++P S Sbjct: 544 AAGTFTAQNRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIRAYQIPECSR 603 Query: 612 QARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + G L+ ++ + GERIT++ F ED+ Y+V T G ++R LS F I Sbjct: 604 TSAGNPLVQVVPVPPGERITSVQSVSDFAEDQ------YLVMLTTGGYIKRTALSSFASI 657 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +G +A++L DE+ V +E+ + L ++ G V +V GR + GVR + Sbjct: 658 RSTGIVAIQLTPGDELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVL-GRATRGVRAMR 716 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L D++ +M IV S Sbjct: 717 LRGDDKLTAMDIV------------------------------------------PASLV 734 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R K ++L V+E GFGKR F KG+ ++ IG V Sbjct: 735 RTGTKKTGAPWLLMVTEDGFGKRVPIKAFP------KGV----AGRVGVIGCKVKT-DGE 783 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATK 878 +Q+++ S+KG L R+ V ++ I SR K Sbjct: 784 SEEQVVVGSNKGILNRLRVRDVSIQSRTAK 813 >gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168] Length = 817 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 338/883 (38%), Positives = 514/883 (58%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSI EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + G+ ++ K KCA Sbjct: 12 LIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSGKTRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G+V+G+YHPHG+A++YDA+ R+ Q +S+R + I+ QGNFG +DG P AA RYTE ++ Sbjct: 72 TVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYRYTEAKM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ K+TVDF PN+D + QEP VL A++P +L NG GIAVGMATN+P HNL Sbjct: 132 STVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ A IDNPD+ L+ L I++GPDFPTG +I GR GIK AY TGRG I+IRG + Sbjct: 192 REICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIFGRRGIKQAYKTGRGKILIRGRFN 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE RE I+ TEIPYQV + ++I EL R+K I I + D S R+VIELK Sbjct: 252 IEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVRIVIELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA A V+LNQL+ T+LQS F V +AL +PE TL +++ FV R+EVV RRT+Y Sbjct: 312 RGAIAKVVLNQLFSKTALQSSFGVINLALVKGRPEILTLKDLIRYFVEHRQEVVTRRTRY 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L L +A+ N+DEV+RIIR S + +TA+ LM+R Sbjct: 372 DLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMER--------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +VQ +AI++++L RLT L +D+R EL L I D+L+ Sbjct: 417 -----------FEFDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKDLLAHPE 465 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLS 554 ++L +IK+E S++++ RRT IV ++ + ED I E+MV+ +S+LGY+KR+PL+ Sbjct: 466 KILALIKEETESLREKYGDDRRTDIVADEVEQINIEDLIKEEEMVILISNLGYIKRIPLT 525 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+AQ RGGKG + + ++DF+ +FI STH ++F ++ G Y KV +P +R Sbjct: 526 AYKAQGRGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSR 585 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G + +L+++ E ITT++ E + Y+ AT G V++ + S F G I Sbjct: 586 GAHIKGLLTVSPNEEITTVVSLKE---FSDEQYLFMATAAGVVKKVQTSQFSNAKTRGII 642 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A++LD D++++ ++++L ++ GQ +R +++R GR GV G+ LA+GD+ Sbjct: 643 AIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRPM-GRAGRGVGGLKLAQGDE 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ A+ + +DA C M Sbjct: 702 -LAGALRVESDA------CMM--------------------------------------- 715 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 ++EKGFGKR +F R G R VS ++ G +V D+D+I+ Sbjct: 716 -------LLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVS--DKTGEIVGTINAADSDEIV 766 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ +G +RV N + R+ GV +F+ + V+ ++R+ Sbjct: 767 CITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDMVIGLDRV 809 >gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] Length = 815 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 342/900 (38%), Positives = 522/900 (58%), Gaps = 101/900 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 7 KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RY Sbjct: 67 TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMATN+ Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++ Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G R Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R +VV Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S +P+TA+ LM+R Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER--------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G D +VQ +AI++++L RLT L +D+R EL L + I D Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLGY+ Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S +RG + ++LS++ E IT ++ E + + Y++ AT G V++ +F Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFANA 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA+KLD D+++S +++I+L T+ GQ +R IR GR+S GV GI Sbjct: 638 KTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGIK 696 Query: 729 LAKGDQVI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L+ D++ + +++ + Y +R+ + SA R G Sbjct: 697 LSSEDELTGALRVTENQKMLVMTENGYGKRVEF-SEFSAHGRGTGG-------------- 741 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 Q I T+SEK G + Sbjct: 742 ----------------QRIYTLSEK-------------------------------TGEV 754 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + V D+D+++ ++ +G IR+ V+ + R+ +GV I + ++ ++ + E Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814 >gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] Length = 879 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 356/901 (39%), Positives = 512/901 (56%), Gaps = 96/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KCA Sbjct: 30 IEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRAFNKCA 89 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYD L R+ Q W +R L GQGNFGS D AA RYTE ++ Sbjct: 90 RVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETKM 149 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+PNYDG EP VL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 150 APIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHNL 209 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + NP+ L ALME I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 210 REVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGRGSITMR 269 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIA+L++E ++ I+DLRDE S R G R+ Sbjct: 270 AVVNVEEIHG-RTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQRL 328 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+LN LY++T LQ FS NM+A+ P +L ++ +V + +V+V Sbjct: 329 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNHQMDVIV 388 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A + AH+L GL A+ LDEV+ +IR SP + AR LM D Sbjct: 389 RRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM----------DF 438 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E Q +AIL ++L RL L R I++ + L I E I Sbjct: 439 LD----------------IDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLISEYNAI 482 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVK 549 ++S R II +EL + + RRT I+ G DM ED I E++VVT++ GY+K Sbjct: 483 IASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTITRGGYIK 542 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH+ +LFF++LG VY+ K + L Sbjct: 543 RTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKGYELQEA 602 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ L N+L E I +M E + Y+V ATK G V++++LSD+ Sbjct: 603 GRDAKGQHLANLLEFQPDEHIAQVMDLKTYEDAE---YLVLATKGGLVKKSRLSDYDTNR 659 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + E+DILL ++ G +RF + ++R GR++ GV G+ Sbjct: 660 TAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRSTSGVTGM 718 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 GD++IS +V+ Sbjct: 719 KFRDGDELISAQVVI--------------------------------------------- 733 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFP 846 E F+ V+E G+ KRT +R+ R+G GI+ V+K+ E GALV Sbjct: 734 --------PESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIK---VAKLVEGRGALVGGLI 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 V++ND++++V G ++R V+E+ R T GV+ K + ++ + R ++ ++ ++ Sbjct: 783 VSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQK 842 Query: 907 E 907 E Sbjct: 843 E 843 >gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] Length = 922 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 356/908 (39%), Positives = 520/908 (57%), Gaps = 112/908 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 42 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR+ Sbjct: 102 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 161 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP HN+ Sbjct: 162 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 221 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +D+P+ L+ L+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 222 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 281 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 282 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQRL 340 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A VILN LY++T LQ F NM+AL P +L ++ +++ + EVV Sbjct: 341 VLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVVD 400 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKYL +A +R H+L G A+ ++EV+ +IR SP+ + AR LM DL Sbjct: 401 RRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------DL 450 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L RL L R I +E L +I + DI Sbjct: 451 LD----------------VDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDI 494 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ E+ + D+ RRTRI+ +M ED I E++VVTV+H GY+KR Sbjct: 495 LAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 554 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P GS Sbjct: 555 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGS 614 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+ + N+L L E+I ++ + DE+ Y+V AT+ G +++ +L+++ Sbjct: 615 RDSKGQHVANLLQLGPDEKIQQVLSIHDYDEAK----YLVLATRSGKIKKTRLNEYDSTR 670 Query: 670 RSGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--S 711 + G IA++L D DE++ C E++I++ ++ G V+F Sbjct: 671 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 730 Query: 712 AIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+ + A D ++SM +V A++D D Sbjct: 731 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVV-PAESDSD------------------- 769 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ V+ +GF KRT+ ++R+ R+G G++ Sbjct: 770 -------------------------------LVVVTNEGFAKRTALSEYRLQGRNGYGVK 798 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ + G+LV V+++DQI+ + G +IR V EI+ R T+GV + K Sbjct: 799 AINL--VEGRGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 856 Query: 889 ERVVSVER 896 + ++S+ R Sbjct: 857 DEIISIAR 864 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 15/168 (8%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802 ADY++ + + QR ++ + +EI D + + E ++L +E ++T Sbjct: 489 ADYNDILAKPER---QRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVT 545 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V+ G+ KRT + ++R +R GKGI+ T ++ E + F + ++ ++ +++G + Sbjct: 546 VTHSGYIKRTKADEYRAQHRGGKGIKGT---RLREDDVVDHFFLTSTHNWLLFFTNEGRV 602 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907 R+ E+ SR +KG + DE++ V I + DEA+ Sbjct: 603 YRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHD---YDEAK 647 >gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20] Length = 893 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 360/912 (39%), Positives = 515/912 (56%), Gaps = 104/912 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 23 IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG YHPHG++AIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 83 RIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +D+VDF+ NYDG QEPV+L +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++PD LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI R Sbjct: 203 REVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ ++ IAD+RDE S R G R+ Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ T LQ F NM+AL P +L G ++ +VA + +V+V Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVAHQIDVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+++ L KA +R H+L GL A+ LD V+ +IR SP E AR LM Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E Q AIL L+L RL L R I+ E L +K+ +I Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++S R GI+ EL + ++ RRTRIV +M ED I ED+VVT++ GY KR Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP G Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+ + N+L+ GE I +M + D++ Y+V AT+ G V++ +LS++ Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----YLVLATRRGLVKKTRLSEYNSNR 651 Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 G IA+ L + DE++S + D+LL ++ GQ +RF +R GR + Sbjct: 652 SGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRP-TGRATS 710 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ + D +++M +V + D D Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840 + V+E G+ KRT+ D+ + R G G++ ++ ++ N +GA Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899 LV + D+++ + G ++R V E+ R T+GV +R+++V R E Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARSTER 836 Query: 900 --SEIVDEAEST 909 E VD A+S Sbjct: 837 DMEEAVDAADSA 848 >gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] Length = 911 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 356/908 (39%), Positives = 520/908 (57%), Gaps = 112/908 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 31 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 90 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR+ Sbjct: 91 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 150 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP HN+ Sbjct: 151 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 210 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +D+P+ L+ L+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 211 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 270 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 271 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQRL 329 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A VILN LY++T LQ F NM+AL P +L ++ +++ + EVV Sbjct: 330 VLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVVD 389 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKYL +A +R H+L G A+ ++EV+ +IR SP+ + AR LM DL Sbjct: 390 RRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------DL 439 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +VQ AIL ++L RL L R I +E L +I + DI Sbjct: 440 LD----------------VDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDI 483 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ E+ + D+ RRTRI+ +M ED I E++VVTV+H GY+KR Sbjct: 484 LAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 543 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P GS Sbjct: 544 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGS 603 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+ + N+L L E+I ++ + DE+ Y+V AT+ G +++ +L+++ Sbjct: 604 RDSKGQHVANLLQLGPDEKIQQVLSIHDYDEAK----YLVLATRSGKIKKTRLNEYDSTR 659 Query: 670 RSGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--S 711 + G IA++L D DE++ C E++I++ ++ G V+F Sbjct: 660 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 719 Query: 712 AIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768 +R GR + GV+ + A D ++SM +V A++D D Sbjct: 720 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVV-PAESDSD------------------- 758 Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 ++ V+ +GF KRT+ ++R+ R+G G++ Sbjct: 759 -------------------------------LVVVTNEGFAKRTALSEYRLQGRNGYGVK 787 Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 A ++ + G+LV V+++DQI+ + G +IR V EI+ R T+GV + K Sbjct: 788 AINL--VEGRGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 845 Query: 889 ERVVSVER 896 + ++S+ R Sbjct: 846 DEIISIAR 853 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 82/168 (48%), Gaps = 15/168 (8%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILT 802 ADY++ + + QR ++ + +EI D + + E ++L +E ++T Sbjct: 478 ADYNDILAKPER---QRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVT 534 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V+ G+ KRT + ++R +R GKGI+ T ++ E + F + ++ ++ +++G + Sbjct: 535 VTHSGYIKRTKADEYRAQHRGGKGIKGT---RLREDDVVDHFFLTSTHNWLLFFTNEGRV 591 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907 R+ E+ SR +KG + DE++ V I + DEA+ Sbjct: 592 YRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHD---YDEAK 636 >gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] Length = 815 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 320/720 (44%), Positives = 451/720 (62%), Gaps = 30/720 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 +E I + + +M+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ NK Y Sbjct: 4 KEGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAY 63 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI G+V+GKYHPHG+ A+YD+ RMAQD+S+R L++G GNFGS+DGD AA RYT Sbjct: 64 KKSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYT 123 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K +L D+ KDTVDF PNYDGS EP+VL +R PN+LVNG GIAVGMATN+P Sbjct: 124 EMRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVP 183 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G A+IDNP+I +D LM+ I+GPDFPT A+I G GI++ Y TGRGSI +R Sbjct: 184 PHNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVR 243 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 IE+ + +I+VTE+PYQVNKA ++E IA+L R+K I I LRDESDR G R+V Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IEL+ + ++LN LY++T +Q F M+AL P L IL ++ +EEV+ R Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 R++Y L KA +AH+L GL IA+ ++DEV+R IR S E A+ L+ + Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISK----------- 412 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q AIL++RL RLTGL RD I + + I D+L Sbjct: 413 ---------------FGLSEKQAVAILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 SSR +++G++K EL K+ RRT I L DM+ D I + M +T++ Y+KR+ Sbjct: 458 SSREKIMGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITLTKQNYIKRI 517 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 S R Q++GG+G SG+ M+D D+V + STH +LFF++ G VY + + +P S Sbjct: 518 DSSDLRTQKKGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSR 577 Query: 612 QARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG A+IN I SL E +T ++ D S Y++ TK+G +++ L ++ IN+ Sbjct: 578 TARGSAMINFITSLGADEHVTELLDL--DISEEGTKYLLMVTKYGYIKKTALEEYKNINK 635 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IAM+L D +++V +I++ T+ G +RF I V R++ GV G+ L Sbjct: 636 NGLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRL 695 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 60/103 (58%), Gaps = 6/103 (5%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 I T+S G KR ++ +R+ R+G+G + K E+ ALVA +D D+++ +S++ Sbjct: 712 IFTISADGNAKRNAASAYRLQGRNGQG--TINFKKGYEVVALVAA---DDRDELVGISEQ 766 Query: 860 GTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901 G IR+P ++I ++ +GV++ + +R+ S++ + E E Sbjct: 767 GITIRIPADQISSKKAKGGQGVILQRLEEGDRIASIDVVSEPE 809 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 20/116 (17%) Query: 772 ITSLKNDSSV----EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK-G 826 ITSL D V + +ISEE + ++L V++ G+ K+T+ +++ N++G Sbjct: 588 ITSLGADEHVTELLDLDISEEGTK-------YLLMVTKYGYIKKTALEEYKNINKNGLIA 640 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGV 880 +R D + LVAV PV N++II+ + KG IR +++ +R SR+ GV Sbjct: 641 MRLKDEDR------LVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGV 690 >gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 893 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 364/933 (39%), Positives = 526/933 (56%), Gaps = 117/933 (12%) Query: 8 SDEEEE----KGITSVSITD---------EMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54 SDE EE +G TS+++ + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR Sbjct: 2 SDEVEEIIGDEGATSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHR 61 Query: 55 RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114 R+L+ M G + K +R+ G+VMG YHPHG++AIYDALAR+ Q WSLR L+ GQ Sbjct: 62 RVLYAMYDGGYRPTASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQ 121 Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174 GNFG+ PAA RYTEC++ A +L D+ +D+VDF+ NYDG QEPV+L +R+PN+ Sbjct: 122 GNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNL 181 Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAV 230 LVNG GIAVGMAT IP HNL EV G +++PD LDAL+E I GPDFPTGA Sbjct: 182 LVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGAT 241 Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290 ILGR GI++AY TGRGSI R V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ Sbjct: 242 ILGRRGIEDAYRTGRGSITQRAVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRD 300 Query: 291 KRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349 ++ IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL P Sbjct: 301 GQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVP 360 Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409 +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL A+ LD V+ +IR SP Sbjct: 361 RTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPT 420 Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469 E AR LM G + + E Q AIL L+L RL L Sbjct: 421 TEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAALE 454 Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529 R I+ E + L +K+ +I++S R GI+ EL + ++ RRTRIV +M Sbjct: 455 RLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSM 514 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 ED I ED+VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH + Sbjct: 515 EDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWL 574 Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYV 648 LFF++ G VY+ K + LP G ++G+ + N+L+ GE I +M + D++ ++ Sbjct: 575 LFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELRDYDQAD----FL 630 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLG 703 V AT+ G V++ +LS++ G IA+ L + DE++S + D+LL + G Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690 Query: 704 QCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761 Q +RF +R GR + GV G+ +GD +++M +V + D D Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREGDYLLAMDVVDPSWQDAD------------ 737 Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 + V+E G+ KRT+ D+ + Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759 Query: 822 RSGKGIRATDV--SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 R G G++ ++ ++ N +GALV + D+++ + G ++R V E+ R T+G Sbjct: 760 RGGLGVKVANLVEARGNLVGALV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQG 815 Query: 880 VVIFSTAKDERVVSVERIRE---SEIVDEAEST 909 V +R+++V R E E VD A+S Sbjct: 816 VTFAKPDAGDRIIAVARNTERDMEEAVDAADSA 848 >gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152] gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152] Length = 836 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 328/734 (44%), Positives = 462/734 (62%), Gaps = 39/734 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EMQNSY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G ++ YVK A Sbjct: 15 VEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPDRGYVKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG YHPHG++AIYD L RMAQ W++R L++GQGNFGS D AA RYTECRL Sbjct: 75 RPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTECRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L ++ +TVDF PNYDG QEPVVL +R PN+L+NG GIAVGMATNIP HNL Sbjct: 135 TPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + +DN D D L A ME I+GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 195 TELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQGIHDAYTTGRGSIKMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV IE+ + R IV+TE+PYQVN + IAE V++ +I IAD+ DE SDR G R+ Sbjct: 255 GVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGIADIHDESSDRVGLRI 314 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ +KR A A V+LN LY++T LQ+ F NM+++ P L +++ +V + +V++ Sbjct: 315 VVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRLYVNHQLDVII 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YLL KA +RAH+L GL A+ LDEV+ +IR S N +TAR LM+ L Sbjct: 375 RRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTARTGLME----------L 424 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL+++L RL+ L R I ++L + EI + DI Sbjct: 425 LD----------------IDEIQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDI 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R I++ EL + ++ RRT+IV D+ DED I RED+VVT++ GY KR Sbjct: 469 LDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAREDVVVTITETGYAKR 528 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEAN 588 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ E + Y+V ATK+G V++++LSDF NR Sbjct: 589 RTARGQHVANLLAFQPDEKIAQIIQIKTYEDAP---YLVLATKNGLVKKSRLSDF-DSNR 644 Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 SG I A+ L DE++ C+ ++D+LL + GQ +RF + A+R GR + GV+G+ Sbjct: 645 SGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEALRPM-GRATSGVQGM 703 Query: 728 SLAKGDQVISMAIV 741 D+++S+ +V Sbjct: 704 RFNAEDELLSLNVV 717 >gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247] gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247] Length = 827 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 360/904 (39%), Positives = 521/904 (57%), Gaps = 95/904 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E + V + EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ Sbjct: 1 MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK A+ E MG YHPHG+ AIYDAL R+AQ WS+R LI+GQGNFGS Sbjct: 61 YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A +L D+ ++TVDF PNYDG EP VL AR PN+L+NG G Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D + +++PD D L A ME I+GPDFPT A+I+G G Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGSQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI +R V IE+ G +VVTE+PYQVN +++ IAE V E ++ I Sbjct: 241 IRDAYTTGRGSIRMRSVVDIEENKG-TTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 + + D+ SDR G R+V+ L+R A A V+LN LY+++ LQ+ F NM+++ P L Sbjct: 300 SRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +VA + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S N E AR Sbjct: 360 QMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM DL++ + E+Q AIL ++L RL+ L R I + Sbjct: 420 GLM----------DLLE----------------IDEIQADAILAMQLRRLSALERQKIVD 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I++ EL V D+ RRT+I+ D+ DED I R Sbjct: 454 ELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKYGDDRRTKIIAADGDVTDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+QRRGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTK 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIQL---KSYQDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SA 712 V+++KL DF NRSG I A+ L DE++ + C+ ++D+LL ++ GQ +RF A Sbjct: 631 LVKKSKLEDF-DSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV+G+ D ++S+ +V Y+ + SG + Sbjct: 690 LRPM-GRQTSGVQGMRFNADDTLLSLNVVREG--------TYLLVAT------SGGYAKR 734 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 T + +D V+G G G T ++D R G+ I Sbjct: 735 TGM-DDYPVQG---------------------RGGKGVLTIAHD----RRRGELI----- 763 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 GAL+ V+D+ ++ ++ G +IR ++R A R TKGV + + + V+ Sbjct: 764 ------GALI----VDDDSELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVI 813 Query: 893 SVER 896 ++ R Sbjct: 814 AIAR 817 >gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894] gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894] Length = 856 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 362/918 (39%), Positives = 522/918 (56%), Gaps = 112/918 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M G ++ + KCA Sbjct: 20 VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFSKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYDA+ R+ QDWSLR L+ GQGNFGS DP AA RYTECR+ Sbjct: 80 RVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECRM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF+ NYDG QEPVVL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 140 APIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + +P+ L ALM+ ++GPDFPTGA ILG GI+ AY TGRGSI +R Sbjct: 200 REVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQILGTKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ +R +VVTE+PYQVN + KIA+LV + R+ IAD+RDE S R G R+ Sbjct: 260 AVVNVEEIQ-NRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIADIRDETSGRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+AL P +L ++ + + EV+ Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRTLSLDAFIRHWTTHQMEVIR 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT YLL A R H+L G A+ LD+V+ +IR SP+ + AR LM+ Sbjct: 379 RRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAGLME----------- 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL L+L RL L R I +E ++ EI + DI Sbjct: 428 ---------------LLEIDEIQANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + ++ RRT I+ DM ED I E++VVT++ GY KR Sbjct: 473 LAKPERQRSIVGEELDGIVEKYGDERRTHILPYDGDMSMEDLIPEEEVVVTITRGGYAKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP GS Sbjct: 533 TRSDAYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLFFTNFGRVYRAKGYELPEGS 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L+ GE I ++ + +++ Y+V AT+ G V++ +L ++ Sbjct: 593 RDSKGQHVANMLAFQPGEHIAQVLDLRDYDAAE---YLVLATRRGLVKKTRLQEYNSPRS 649 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 +G IA+ L DE++ D++L ++ GQ +RFP + ++R GR + G Sbjct: 650 AGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKGQSIRFPAADESLRPL-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ +GD+V++ A V+ DA Sbjct: 709 VTGMKFREGDEVLTAA-VVREDA------------------------------------- 730 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRT--SSYDFRISNRSGKGIRATDVSKINEIGAL 841 F+ TV+E G KRT S ++R R G GIR ++ + E G L Sbjct: 731 ---------------FLFTVTESGLAKRTELSVDNYRQQGRGGLGIRVANLPE--ERGDL 773 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER----- 896 V V+D+D+++++ ++G ++R V E+R R T+GV K +R+++V R Sbjct: 774 VGALVVDDDDEVLVIMERGKIVRSAVAEVRATGRTTQGVTFAKPDKGDRIIAVARNVERR 833 Query: 897 -------IRESEIVDEAE 907 + ES VDEA+ Sbjct: 834 EEEESASVDESVPVDEAD 851 >gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 860 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 353/913 (38%), Positives = 512/913 (56%), Gaps = 93/913 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M++ E+ I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ Sbjct: 61 YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 PAA RYTEC++ A ++ D+ +++VDF+ NYDG QEP +L AR+PN+LVNG Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMAT IP HNL EV G +++PD L+AL+E I GPDFPTGA ILGR G Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATILGRRG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++AY TGRGSI R V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ ++ I Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 AD+RDE S R G R+VI LKR A A V+LN LY+ T LQ F NM+AL P +L Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 G ++ +V + +V+VRR+++ L KA++R H+L G A+ LD V+ +IR S + AR Sbjct: 360 GFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEARG 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM G + + EVQ AIL L+L RL L R I+ Sbjct: 420 GLM--------------------------GLLGVDEVQADAILALQLRRLAALERLKIQQ 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 E L ++ + DI++S R GI+ EL + ++ RRTRIV +M ED I Sbjct: 454 EAEELQAKVADLKDIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPE 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 E++VVT++ GY KR YR+Q RGGKG G +R++D V F+ +TH +LFF++L Sbjct: 514 EEVVVTITRSGYAKRTRTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNL 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP G A+G+ + N+L+ GE I +M + E + ++V ATK G Sbjct: 574 GRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEEIAQVMELKDYEQA---DFLVLATKRG 630 Query: 656 NVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 V++ +LS++ G IA+ L + DE++S ++ D+LL ++ GQ RF Sbjct: 631 LVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHA 690 Query: 711 S-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 S + GR + GV G+ GD +++M +V D D Sbjct: 691 SDDVLRPTGRATSGVTGMRFRDGDWLLAMDVVDPQWTDAD-------------------- 730 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 + V+E G+ KRT+ ++ R G G++ Sbjct: 731 ------------------------------LFVVTEGGYAKRTNVAEYPTKGRGGLGVKV 760 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++ + E G LV +D+++ + + G ++R V+E+ + R T+GV + Sbjct: 761 ANL--VEERGDLVGALVTAPSDEVLCIMESGKVVRSRVDEVSVTGRNTQGVTFAKPDDGD 818 Query: 890 RVVSVERIRESEI 902 R+++V R E E+ Sbjct: 819 RIIAVARNTEREL 831 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 15/153 (9%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++S + EI D +G +S E +L +E+ ++T++ G+ KRT + Sbjct: 475 QRGIVSDELAEIVEKYGDERRTRIVPFDGEMSME---DLIPEEEVVVTITRSGYAKRTRT 531 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R +R GKG++ + + E + F + ++ ++ G + R E+ Sbjct: 532 DAYRSQHRGGKGVKG---AALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGG 588 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEIVD 904 R KG + + E + V +++ E D Sbjct: 589 RDAKGQHVANLLAFQPGEEIAQVMELKDYEQAD 621 >gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] Length = 970 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 361/909 (39%), Positives = 518/909 (56%), Gaps = 82/909 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VS+ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G W+ K A Sbjct: 73 LLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVWSSPTKKAA 132 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A Y + RMAQD+S+R LI GQGNFGS+DGD AA RYTE +L Sbjct: 133 RVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAAMRYTEVKL 192 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L DL +DTVDF PN+D S EPVVL R P +LVNG GIAVGMATNIP HNL Sbjct: 193 MKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMATNIPPHNL 252 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E +D CV +++PD +D L+ +I PDFPTG ++ G +G+ Y TGRG +++R +H Sbjct: 253 RETIDACVHALEHPDCSVDDLIALISAPDFPTGGIVYGLSGVYEGYRTGRGRVIMRARTH 312 Query: 256 IEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E+ D R +IVV EIPY VNK + E++ EL R+K++ I+++RDES RQ R+ I+ Sbjct: 313 LEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTRQ-IRIAID 371 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+GA +V+LN L++ T +Q F +NMVAL +P L ++ F+ R EVV RRT Sbjct: 372 LKQGAMPEVVLNNLFKNTQMQESFGMNMVALVDGQPMLLNLKQMVVYFLEHRREVVTRRT 431 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN---ASDI--- 427 + L K+R H+L G AIA+AN+DE +R+IR + E A++ LM R W A++I Sbjct: 432 IFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLGFAAEITRR 491 Query: 428 -----KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 KD D + DG YL++VQ IL + L RLTGL R+ I + + Sbjct: 492 AAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKILADYAATME 551 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVT 541 I + +DIL R+ IIK+ELL+ ++ RR+ I + + D I R DMVV+ Sbjct: 552 RIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRDLIPRRDMVVS 611 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ G+VK L+ Y AQ RGGKGR+ +D + F+ +TH +L FS+ G VY Sbjct: 612 LTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFSTAGQVYAI 671 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVR 658 V+ LP G +RG+ ++N+L L + E+I+ I+P F ED Y+ AT G VR Sbjct: 672 DVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEFSEDR------YMFLATDRGTVR 725 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 R LS F R G A L ++++ V + ++D+ L G+CV F S IRV G Sbjct: 726 RTPLSAFSSARR-GIRATNLGD-EKLVGVTITSGDDDVFLLADNGRCVHFKESTIRVM-G 782 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GVRG+ + + V+++A T ++T Sbjct: 783 RTAHGVRGMRVKADESVVALA----------------------------STNDMT----- 809 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 Q L +E GFGKRT+ + + NR GKG+ A V + N Sbjct: 810 -------------------QAFLIATEHGFGKRTALAAYPLRNRGGKGVIAIRVIEKN-- 848 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 GA V+ V D I+L+S G ++R E+ R T G ++ D+ + +V R+ Sbjct: 849 GAPVSGVIVKPEDDIMLLSTGGKVVRTRAGEVPERGRNTVGNILIRMP-DDTLAAVRRVD 907 Query: 899 ESEIVDEAE 907 + DE+E Sbjct: 908 RTGEEDESE 916 >gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505] gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505] Length = 893 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 360/912 (39%), Positives = 515/912 (56%), Gaps = 104/912 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 23 IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMG YHPHG++AIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 83 RIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +D+VDF+ NYDG QEPV+L +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++PD LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI R Sbjct: 203 REVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ ++ IAD+RDE S R G R+ Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ T LQ F NM+AL P +L G ++ +VA + +V+V Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVAHQIDVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+++ L KA +R H+L GL A+ LD V+ +IR SP E AR LM Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E Q AIL L+L RL L R I+ E L +K+ +I Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++S R GI+ EL + ++ RRTRIV +M ED I ED+VVT++ GY KR Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP G Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+ + N+L+ GE I +M + D++ Y+V AT+ G V++ +LS++ Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----YLVLATRRGLVKKTRLSEYNSNR 651 Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 G IA+ L + DE++S + D+LL ++ GQ +RF +R GR + Sbjct: 652 SGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAGQSLRFHADDDTLRP-TGRATS 710 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ + D +++M +V + D D Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840 + V+E G+ KRT+ D+ + R G G++ ++ ++ N +GA Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899 LV + D+++ + G ++R V E+ R T+GV +R+++V R E Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARNTER 836 Query: 900 --SEIVDEAEST 909 E VD A+S Sbjct: 837 DMEEAVDAADSA 848 >gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH] Length = 839 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 334/902 (37%), Positives = 524/902 (58%), Gaps = 88/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ ++ Sbjct: 14 ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R Sbjct: 74 PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ KDTVDF NYDG QEP VL A +PN+L NG GIAVGM+T+ Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP+HNL E++ G + +IDNPD ++ L+ +I+GPDFPTGA I+ GI++ + TG+G++V Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ R +VVTEIPY VNK +++EKI ELV+ + I IAD+RDES R+G R Sbjct: 254 IRSKVSIEQLP-TRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR +V+LNQL++ T LQ F VNM+AL P+ + L ++ + +V+ Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R+T++ L K ++R H+L GL IA N+DEV+ II+ S N + A L +R Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L E+Q RA+L++RL L+ L + ++ E L I+ C Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 +L+ + L +IK++L + ++ PRR+ I+ G+ D++DED I +E++V+T+S GY+ Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 527 KRIGVDSYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G +G +N++ +++ E+I ++ + + N Y F TK+G ++R LS+F I Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISV----NDYQNGYFFFCTKNGTIKRTSLSEFANI 642 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 GK A+ D + SV + ++DI + + G VRF +R + R ++GV GI+ Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +G+ V N S N S Sbjct: 702 LNQGEFV-----------------------------------------NGLSTSSNGS-- 718 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V Sbjct: 719 ----------LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 N+ ++++S G ++R+ + ++ + T GV + + ER+ +V ++ E + + Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826 Query: 909 TE 910 TE Sbjct: 827 TE 828 >gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 820 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 325/890 (36%), Positives = 521/890 (58%), Gaps = 84/890 (9%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Q+G+ N Y Sbjct: 3 EGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSY 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++Y+ + R+AQ W+LR LI+GQGNFGS+D DPPAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+++ + +L D+ K+TVD + N+D S +EP VL R PN+L+NG GIAVGMATNIP Sbjct: 123 EVRMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIP 182 Query: 192 THNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E ++ A IDN + + ++ +M+ ++ PDFPTG +I G G+KNA+ TG+G IV+ Sbjct: 183 PHNLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIYGYDGVKNAFHTGKGRIVL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H E+ G R+ I+V EIPYQVNK+ M+ + L++E ++ I +RDESDR G R+ Sbjct: 243 RAKVHFEEIQG-RQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LK+ + +++LN+L++YT LQ+ F+VN +AL KP + + +++ FV R +V++ Sbjct: 302 VYILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQLNIKDMIQHFVDHRHDVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+KY L K ++R H+L+G + +LD ++++I+ S N A L+++ Sbjct: 362 RRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKK---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +SE Q+++IL++RL LT L D ++ E + L +I+ ++ Sbjct: 412 ----------------FKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNV 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S IIK+ELL +K + RRT+I + ED I E +V+T+SH GY+KR Sbjct: 456 LVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 LS Y+ Q RGG G G R+ DF L I + H +LFF+ G + +V+ +P GS Sbjct: 516 TSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGS 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G+A+ NI+ L Q +++ + + ++ + YV+ T+ G +++ L ++ + Sbjct: 576 KISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSRP 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 + G A+ + D +L ++ + + K G+ +RF + +R GR S GV GI Sbjct: 636 RKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRS-TGRTSSGVIGIH 694 Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 K D VI M Sbjct: 695 FTNKNDMVIGMI------------------------------------------------ 706 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 C + K + +L VSEKGFGKR++ D+RI+NR GKGI+ ++++ + G L+A+ V Sbjct: 707 --CVDGKKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQ--KTGYLIAIKHV 762 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 D D ++++ G +IR+ V+ IR+ R T+GV + + +++ + V ++ Sbjct: 763 TDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVAKV 812 >gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1] gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1] Length = 899 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 343/898 (38%), Positives = 524/898 (58%), Gaps = 56/898 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +V + MQ SY+ YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 18 IETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCA 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG++AIYD L R+AQ W LR LI GQGNFGS DP AA RYTECR+ Sbjct: 78 RVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFGSPGNDPAAAMRYTECRM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF PNYDG QEP +L +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 138 APLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNGSAGIAVGMATNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++PD DAL+E ++GPDFP GA+I+GR GI+ AY TGRGSI R Sbjct: 198 REVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIVGREGIEQAYRTGRGSITQR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +++ + R +V+TE+PY VN + +KIA+L ++ IAD++D S R G ++ Sbjct: 258 AVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQGIADVKDNTSSRTGQQL 317 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L ++T LQ+ FS NM+AL P ++ + +V + +V+ Sbjct: 318 VVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLSIDQFISNWVEHQIDVIR 377 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA + AH+ GL A+ LD V+ +IR SP + AR+ L++ Sbjct: 378 RRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDARQGLIR----------- 426 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL+++L RL L R I + L L + I + DI Sbjct: 427 ---------------LLEIDEIQANAILDMQLRRLAALERQKIIDRLAELELIIADLEDI 471 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ +R I+ EL + + RRT+I+ D+ ED I E++VV+++ GY KR Sbjct: 472 LANVARQRQIVGDELDEIVAKYGDDRRTQIIAADGDLSMEDLIPDEELVVSITRGGYAKR 531 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR Q+RGGKG G +R +D V + H +LFF++ G VY+ K + LP + Sbjct: 532 TLANEYRTQKRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRIKAYNLPEAA 591 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G + +LS E I ++ + E + Y+V AT+ G +++ +L D+ + Sbjct: 592 RDAKGGHVAGLLSFQPDESIAQVLAIRDYEQA---PYLVLATRSGLIKKTRLGDYNSPRQ 648 Query: 671 SGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 +G IA+ + DE++ E E+DILL ++ GQ +RF ++ GR + GV G+ Sbjct: 649 AGVIAINFREDDDELIGAELVNSEDDILLVSRKGQAIRFRADDNQLRPMGRATSGVTGMK 708 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 GD ++SM+++ +H++A+ + +G +E + ++ + V +S Sbjct: 709 FRDGDSLLSMSVI------------RAEHVAAE--IAAGLSE---ANEDTADVAAPVSGA 751 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++KEQF+ T+++ GF KRT ++R+ +R G GI+ ++ + G LV F V Sbjct: 752 ESPD-QVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMALANADR-GGLVGAFIVV 809 Query: 849 DNDQIILVSDKGTLIRVPVN-EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 D D+++ ++ G ++R P+N + R R+T+GV S K + V V R E+ VD+ Sbjct: 810 DGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSPKKGDSVAVVARSVEAREVDD 867 >gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211] gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211] Length = 818 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 358/895 (40%), Positives = 529/895 (59%), Gaps = 97/895 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V IT+E++ +++ YA+NVI+ RA+PD+RDGLKPVHRRI++ M+Q G+ N+K+ K A + Sbjct: 7 VDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAAVV 66 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 GEVM KYHPHG++ IYDA+ R+ Q W++R +++ QGNFGS+DGD AA RYTE R+ K Sbjct: 67 GEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMTKL 126 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TVD +PNYD + EP VL + PN+LVNG GIAVGMATNIP HNL E+ Sbjct: 127 AEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLTEI 186 Query: 199 VDGCVAVIDNP---------DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 V+G +++ID P + LD LM ++GPDFPTG I R+GI++AYATG + Sbjct: 187 VNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI-SRSGIRDAYATGHAGLK 245 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308 +RG + I++ +G R QI+++EIPYQVNK +++ I+ + + +I DI+ LRDESDR + Sbjct: 246 VRGKARIDEKNG-RTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPV 304 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+ELKRGA ++LNQLY+YT LQ+ F+V N+ +NG +P+ L+ ++ F+ R + Sbjct: 305 RIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNG-EPKVLPLLDTMRYFLEHRAD 363 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT Y L KA++RAH+L GL A+ ++DEV+ +IR S AR LM R Sbjct: 364 VVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTR------- 416 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 L++VQ +AIL++RL RL GL R+ ++ E N L I Sbjct: 417 -------------------FQLTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDRL 457 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 IL L IK+EL ++D RR+ I + D+ ED I EDMV+T++ GY Sbjct: 458 KAILGDEKLLWREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMTRAGY 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR L YRAQ RGG+G SG +R+ED T +F+ STH +LFF+ G ++ EK++ LP Sbjct: 518 LKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLP 577 Query: 608 IGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 A+G + N+L L + E + +++ + + + + VFATK G +++ ++ D+ Sbjct: 578 EAGRDAKGTHIKNLLPGLRENESVASVLAIKDFDEAGS---FVFATKRGMIKKTQIRDYG 634 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 I +G IA+ L D ++ V + I+L T GQ +RF + +R GR + GV G Sbjct: 635 NITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVR-DTGRATQGVIG 693 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L GD V+SMA+V GD E+ S Sbjct: 694 IRLRDGDHVVSMAVV------------------------PGDDED--------------S 715 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E +L +SE G GKRT D+ R G G+ DV++ + G LVA+ Sbjct: 716 E------------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTE--KTGKLVALAR 761 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V ++++++++ KGT+IR V E+R+ R +GV I + + V+S IR+ + Sbjct: 762 VAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKED 816 >gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] Length = 838 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 354/896 (39%), Positives = 519/896 (57%), Gaps = 92/896 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V+I DEM++SY+ YA++VI+GRAIPD+RDGLKPVHRR L+ M + G +K Y K A Sbjct: 14 VIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R MGKYHPHG+A+IYD L +MAQ +S R+ L++GQGNFGS+DGD AA RYTE RL Sbjct: 74 RAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEARL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL DL K TVDF PN+D S +EP VL ++ PN+LVNG GIAVGMATN+P HNL Sbjct: 134 TRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV I NPD ++ LM+++ GPDFPTG +I G GI +AY TG G + +RGV+ Sbjct: 194 REVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGTEGIVSAYHTGYGKLTVRGVAE 253 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE +I+++EIPYQVNKA M+E IA LV+EK+I I+DLRDESDR G RVV++LK Sbjct: 254 IEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVDLK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 +G V+LNQLY++T L+S F + +A++ +P+ L I+ F+ R VV RR ++ Sbjct: 314 KGVIPTVVLNQLYKHTPLESTFGIINLAISDNQPKVLGLKAIISEFLHHRATVVRRRCEF 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DR H+L+GL +A+ +DEV+ IR S + E A++ L+ Sbjct: 374 DLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALI----------------- 416 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T L+E QT AIL+++L RL L + IR+E +SL I E ILS + Sbjct: 417 ---------ATFGLTEPQTVAILQMQLRRLAALEQAKIRDERDSLAHVIAELERILSCEA 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + I++E++ V + RRT I +E ED I + ++++++ Y+KR+PL Sbjct: 468 NIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKPVLISITTQNYIKRLPLET 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YR QRRGG+G G+ +DED V D+F+ S H +L F++ G VY KV+ +P S ++G Sbjct: 528 YRMQRRGGRGVIGMATKDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKG 587 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 KA++N+L L Q E IT ++P + ++ Y++F+T+ G V + F + +G A Sbjct: 588 KAIVNLLEL-QDELITAVIPI---RTFRHDRYLLFSTEQGQVVKVPQDQFSRPRSTGINA 643 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + L D ++ V+ +++L+T+ GQ +RF +R GRN+ GVRGI L GD + Sbjct: 644 ISLRENDSLVDVKLTDGTKELILSTRKGQSLRFHEQTVRT-VGRNASGVRGIKLKYGD-L 701 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + A V+ D H+ L G E Sbjct: 702 VQAATVVEKD-----------HLLTITELGYGKRTEF----------------------- 727 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 ++F +G G+ T G+R + N + A A V+ +D+I++ Sbjct: 728 -DEF------RGHGRGT------------MGVRNILTAPQNGVVATKA---VSSDDEIVV 765 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV----ERIRESEIVDEAE 907 +S G +IR+ V++I + R+ +GV I +D+RVV + + I + DEAE Sbjct: 766 MSALGNVIRMKVSDISVQKRSARGVRIIRLDEDDRVVGLAVLQQEILSASFDDEAE 821 >gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Flavobacteriales bacterium ALC-1] gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Flavobacteriales bacterium ALC-1] Length = 622 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 303/649 (46%), Positives = 440/649 (67%), Gaps = 31/649 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + + ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV N + Sbjct: 3 EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAH 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R++K + +L D+ K+TVD + N+D + +EP VL R P +LVNG GIAVGMATN+P Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL EVV+G +A I+N DI++D L++ I+ PDFPTG I G G+K A+ TGRG IV+R Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 ++IE+ +G RE I+V EIPYQVNKA M++K A+LV +K++ I+ +RDESDR G R+V Sbjct: 243 AKANIEEVNG-RECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +++LN+L++YT+LQS FSVN +AL +P+ L ++ FV R EVVVR Sbjct: 302 YVLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RTKY L KA +RAH+L GL IA N+DEV+ +IR S N + AR +L++R Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIER----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE+Q +AI+E+RL +LTGL +D +R E ++L I++ DIL Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + R + IIK+EL VKD+ RR+ I D+ ED I E +V+T+SH GY+KR Sbjct: 456 DKKDRRMDIIKEELEVVKDKYGDERRSNIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 L+ Y+ Q RGG G+ R+EDF+ LF+ + H +LFF+ G + +V+ +P G+ Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAK 575 Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658 ++G+A+ N++++ Q +++ + + D+ N+ YV+ ATK NVR Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDDDYINSHYVIMATK--NVR 622 Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 6/100 (6%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ++T+S G+ KRTS +++ NR G G +A+ NE L +F ++ ++ Sbjct: 500 EKVVITISHAGYIKRTSLTEYKTQNRGGVGQKASTTR--NE-DFLEHLFVGTNHQYMLFF 556 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVS 893 + KG + V EI ++ +KG I + +D++V++ Sbjct: 557 TQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQDDKVMA 596 >gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] Length = 806 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 334/881 (37%), Positives = 521/881 (59%), Gaps = 97/881 (11%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV NK + K ARI GE Sbjct: 7 IEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGE 66 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+AAIYD L R+AQDWS+R L+EGQGNFGSVD DPPAA RYTE RL K + Sbjct: 67 VMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLSKISE 126 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+T++ N+DGS +EP+VL +++PN+L NG GIAVGM TNIP HN+ E+VD Sbjct: 127 ELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNISELVD 186 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+I NP I ++ L+E I GPDFPTG I+GR GI+ Y TG+GS IRG H+E+ Sbjct: 187 GFLALIKNPQISIEELIEFIPGPDFPTGGEIIGRAGIREMYTTGKGSFTIRGKLHVEEDK 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 +++IV+TEIPY V+KA +++KI E E + I D+RDESD++G R+VIE+ + Sbjct: 247 -KKKKIVITEIPYNVSKADLIKKIVEYA-ENSSLQIKDIRDESDKEGLRIVIEIPNNVNE 304 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 D+I+N LY++T LQS F ++ ++ K P L ++ AFV R EVV +R ++ + Sbjct: 305 DIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQFFYKQ 364 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 +AH+L GL A ++D ++ +IR S + +A IK+L+++ D Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSA-------------IKELMEMFD---- 407 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 +E Q +AI++LRL RLT L + + N L ++K +++ ++ Sbjct: 408 ---------FTETQAKAIVDLRLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDEKVYE 458 Query: 500 IIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 I +EL +K + R++ I+ E + + + I +++V++++ GY+K + LS + Sbjct: 459 KIIEELTYIKAQYGDSRKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTF 518 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 R Q+RGGKG +G + ++D + ++ H LFF+S G VY +++ S ++GK Sbjct: 519 RTQKRGGKGVTGSSLMNDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGK 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLY--VVFATKHGNVRRNKLSDFIQINRSGKI 674 + +++++ E+I T++ S +N + F TK G V+R L DF IN G Sbjct: 579 HISKYINIDKDEKILTML-------SVDNFVGELFFVTKFGKVKRTSLKDFENINARGLR 631 Query: 675 AMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+ D D ++SV+ E IL+ TK G +RFPIS +R GR+++GV GI L+K D Sbjct: 632 AINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTM-GRSAMGVTGIKLSKDD 690 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S A+ L ND Sbjct: 691 KVVSSAL----------------------------------LSND--------------- 701 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 E +ILTV+ G+GK T + +RI R+G GI+ ++S +++ G +V+V V N+ I Sbjct: 702 ---ENYILTVTSLGYGKLTETSQYRIQKRAGLGIK--NISDVSKTGYVVSVSYVLGNEDI 756 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ + G I++ ++ +R R TKGV + + ++ +++ + Sbjct: 757 MIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADI 797 >gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] Length = 827 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 346/888 (38%), Positives = 505/888 (56%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T+ I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M + GV N + K + Sbjct: 18 VTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEAGVTSNSAHRKSS 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + GE MG YHPHG++AIYD LARMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 78 SVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ +DTVDF NYD +EP VL A +PN+LVNG GIAVGM+TNIP HNL Sbjct: 138 SPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D VA+I PD ++ LME ++GPDFPTGA I+GR + AY TGRG + +R Sbjct: 198 GEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIVGRNAVHKAYKTGRGRVRVRAEFE 257 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +++ G +IV++E+P+Q NK+ ++E+IAE V + I I DLRDESDR G RVV+ELK Sbjct: 258 VDEEEG---RIVISELPFQQNKSRLVERIAEDVNDGSIEGIRDLRDESDRDGIRVVVELK 314 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+V+ NQL + L+ F V +AL P+ L L+ +V R +VV RR+++ Sbjct: 315 RDAMAEVVKNQLLE-SHLERTFGVINLALVDGSPQVLDLKQTLEYYVEHRRDVVRRRSEH 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L + DRAH+L G A+ +D+VV I+ S + + A+ L Sbjct: 374 ELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAAL------------------ 415 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++ Y SE Q I+ ++L LT + +I +E + I+ IL Sbjct: 416 EADYE--------FSEAQAEHIVRMQLGSLTSMETQEIESEYEDVTARIERLETILGDPD 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +I EL +KDE D RRT +E + D+ ED I E+ VV +S Y+KR+ L Sbjct: 468 ELDQVIITELREIKDEYDDERRTSFIEDVGDVTHEDLIPEEECVVVMSEDDYIKRMSLDT 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGGKG G +++ D V+ +F ++H +L F++ G +Y+ K + +P S ARG Sbjct: 528 FRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTARG 587 Query: 616 KALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 K+ +N++ L+ GE I ++ +DE ++ T+ G ++R + F I +G Sbjct: 588 KSAVNLIDLDDGEEIEAVVNTDDLDDDE------FLTMVTRDGYIKRTAVDQFGNIRSTG 641 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A++L+ DE++ VE DI++ ++ G +RF S R GR + GV GI L +G Sbjct: 642 IRAIRLEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAM-GRTARGVIGIDLREG 700 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V +A I E+R Sbjct: 701 DAVAGVAA--------------------------------------------IDEDR--- 713 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 ++LTV+E G+GKR+ ++R+ +R+GKG+ D+ + G VA+ V D Sbjct: 714 ----HNWVLTVTENGYGKRSDLDEYRLQSRNGKGL--IDIKTGDRNGEAVAIEAVTYGDH 767 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++ +SD G ++R V EI R TKGV++ + D+ V SV+ + ES Sbjct: 768 LLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVSES 815 >gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2] Length = 852 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 355/911 (38%), Positives = 526/911 (57%), Gaps = 103/911 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KC+ Sbjct: 14 VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRNFSKCS 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG+YHPHG++AIYDA+ R+ Q W++R L+ GQGNFGS D AA RYTEC++ Sbjct: 74 RVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGDDGAAAPRYTECKM 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ + TVDF+ NYDG QEP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 134 APLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++ +P+ L+AL+ I++GPDFP GA ILGR GI++ Y TGRGSI R Sbjct: 194 REVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATILGRKGIEDTYRTGRGSITQR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ G R +VVT++PY VN + KIA V++ ++ IADLRDES R G R+ Sbjct: 254 AVVEVEEIQG-RTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIADLRDESSGRTGQRL 312 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++TSLQ FS NM+A+ P +L L+ +V + EV+V Sbjct: 313 VIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDSVPRTLSLDSFLRLWVKHQVEVIV 372 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L G A+ LDEV+ +IR SP+ + AR LM DL Sbjct: 373 RRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARSGLM----------DL 422 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ + E+Q AIL+L+L RL L R I+ E + +I E I Sbjct: 423 LE----------------VDEIQANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYI 466 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L++ +R I+ +EL + + RRT+I+ G D+ ED I E++VVT++ GY K Sbjct: 467 LATPARQREIVSEELDEIVERYGDDRRTKIMAGFDGDVSMEDLIPEEEVVVTITRGGYAK 526 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R +YRAQ RGGKG G +R +D V F+ STH +LFF++ G VY+ K + LP G Sbjct: 527 RTQNHLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEG 586 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 S A+G+ + N+L+L GE I ++ + E + +++ AT+ G V++ +LS++ Sbjct: 587 SRDAKGQHVANLLALQPGETIAKVLSIRDYEEAE---FLILATQSGVVKKTRLSEYDSNR 643 Query: 670 RSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVG 723 G IA+ L DE++S + E+ +L+ ++ G +RF +IR GR + G Sbjct: 644 TGGVIAINLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAADDDSIRPL-GRVTGG 702 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V G+ D++++M + I DT Sbjct: 703 VTGMKFKGDDELLTMDV------------------------IQPDT-------------- 724 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALV 842 F+ V+E G+ KRT ++R+ R G GIR V+KI E G LV Sbjct: 725 ---------------FVFVVTEGGYAKRTPVDEYRLQGRGGLGIR---VAKITEQRGDLV 766 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900 V++ +++++V ++G ++R ++E+ R T GVV K++R+++V R E+ Sbjct: 767 GGLIVDEGEEVLVVMERGKIVRSNIDEVPAKGRNTMGVVFAKPGKNDRIIAVTRGPETVV 826 Query: 901 -EIVDEAESTE 910 E+ +EA+ E Sbjct: 827 EELDEEADEPE 837 >gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974] gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974] Length = 826 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 366/903 (40%), Positives = 518/903 (57%), Gaps = 94/903 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE +S + I V + EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL M Sbjct: 1 MTEPTDTSPPRDR--IEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ YVK AR E MG YHPHG++AIYDAL RMAQ WSLR LI+GQGNFGS Sbjct: 59 QDQGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSR 118 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 D AA RYTE RL A ++ D+ +TVDF PNYDG +EP VL AR PN+LVNG G Sbjct: 119 GNDGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL EV D +++ D D L+A+ EI++GPDFPT +I+G G Sbjct: 179 GIAVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGTDG 238 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ SG R +V+TE+PYQVN M+ IAE VR+ +I I Sbjct: 239 IADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGI 298 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F NM+A+ P L Sbjct: 299 AQIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 I++ +VA + EV+VRRT+YLL KA +RAH+L GL A+ LDEV+ +IR S + + AR Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LM+ L+D + E+Q RAIL ++L RL L R I + Sbjct: 419 GLME----------LLD----------------VDEIQARAILAMQLGRLAALERQKIFD 452 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 EL + EI + DIL+ R I++ EL + D+ RRTRI+ D+ DED I + Sbjct: 453 ELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQ 512 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 513 EDVVVTITETGYAKRTKTELYRSQKRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTR 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP + ARG+ + N+L+L E+I ++ E + Y+V ATK G Sbjct: 573 GRVYRIKAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYEDAP---YLVLATKRG 629 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 ++++L++F NRSG I A+ L DE++ C+ ++D+LL ++ GQ +RF + + Sbjct: 630 LTKKSRLTEF-DSNRSGGIVAVNLKDDDELVGAALCSADDDLLLVSEHGQSIRFHANDEQ 688 Query: 715 VFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR + GV G+ + DQ+++M +V Y+ + Sbjct: 689 LRPMGRATSGVLGMRFNEDDQLLAMNVVRDG--------AYL----------------LV 724 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 + + ++ E Q G G T YD R R G Sbjct: 725 ATSGGYAKRTDLGEYPAQ------------GRGGKGVLTVQYDRR---RGG--------- 760 Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 LV V+D+ ++ ++ G +IR ++R A R TKGV + + A+ +R+++ Sbjct: 761 -------LVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIA 813 Query: 894 VER 896 V R Sbjct: 814 VAR 816 Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 36/257 (14%) Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 KHG+ RR ++ IA + D RDE L QE+ ++ T+ G R Sbjct: 488 KHGDERRTRI-----------IAAEGDVRDEDL----IAQEDVVVTITETGYAKRTKTEL 532 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 R R GV+G +L + D V + D I + R+ + + ++ Sbjct: 533 YRS-QKRGGKGVQGAALKQDDIVAHFFVCSTHDW-----ILFFTTRGRVYRIKAYELPDM 586 Query: 773 TSLKNDSSVEGNIS----EERCQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSG 824 V ++ E+ Q + L+ +++ +++G K++ +F SNRSG Sbjct: 587 NRAARGQHVANLLALQTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTEFD-SNRSG 645 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN--EIRIASRATKGVVI 882 GI A ++ +E LV + +D ++LVS+ G IR N ++R RAT GV+ Sbjct: 646 -GIVAVNLKDDDE---LVGAALCSADDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLG 701 Query: 883 FSTAKDERVVSVERIRE 899 +D++++++ +R+ Sbjct: 702 MRFNEDDQLLAMNVVRD 718 >gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 821 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 340/876 (38%), Positives = 531/876 (60%), Gaps = 85/876 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G ++ Y K A Sbjct: 9 IIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQPYKKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R G+V+GKYHPHG++++Y AL RMAQ+W LR L++GQGNFGS+DGD PAA RYTE RL Sbjct: 69 RTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ K+TVDF N+D + +EP VL R P +L+NG GIAVGMATN+P HNL Sbjct: 129 GNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATNMPPHNL 188 Query: 196 GEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 E ++G +A ID+ +ID+D LM+ I+ PDFPTGA I G GI+ + G+G I++RG Sbjct: 189 TECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIYGFQGIREVFEVGKGRILLRGKV 248 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE ++E+IV+ EIPY VNK ++E IA LV EK++ + + DESDR+G R+V+++ Sbjct: 249 EIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGMRIVVDV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ ++ V+LN+LY+ T+L+S F+VN +AL +P L ++ FV R EVVVRRT+ Sbjct: 308 KKDFNSGVLLNKLYKLTALESSFNVNNIALVNGRPRTLNLKELICYFVEHRVEVVVRRTQ 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LN+ R H++ GL IA ++DE+V II S NP A I Sbjct: 368 YDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEA--------------------I 407 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D S G L+E+Q+RAI+E+RL +LTGL +D +R E L I +ILS+R Sbjct: 408 DRLS------GRFDLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWKEILSNR 461 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + L+ IIK EL+ V+D R+T IV D +D ++M++T+SHLGY+KR PL Sbjct: 462 NILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYIKRTPLV 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 +RAQ RGG G +RD+DFV ++ + H +LFF+ G Y KV+++P G+ ++ Sbjct: 522 DFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPAGAKTSK 581 Query: 615 GKALINILSLNQGERITTIM--PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+A+ N+L+++ ++++ + + D+ + Y+VF TK G +++ L+ + + ++G Sbjct: 582 GRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYSRPRQNG 641 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AK 731 A+ + DE+++V+ N+I++ + G+ +RF + +R GR + GV ++L Sbjct: 642 VKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSM-GRLAAGVISMTLDLV 700 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D++I M I+ ND Sbjct: 701 DDEIIGMIII-----------------------------------NDK------------ 713 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K + +L VSE+G+GKR+ D+RI NR GKGI+ ++++ + G LV++ V +++ Sbjct: 714 ----KRENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITE--KTGFLVSIKNVTEHN 767 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 +++++ G IR+ V+++ + RAT+GV + + K Sbjct: 768 DVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEK 803 >gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421] gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421] Length = 838 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 339/867 (39%), Positives = 506/867 (58%), Gaps = 87/867 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + I E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ KCA+I Sbjct: 15 IPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRYSGPTRKCAKIV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDP AA RYTE ++ K Sbjct: 75 GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPAAAYRYTEAKMAKI 134 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A +++D+ K+TVDF N+D S +EP VL A++P +L NG GIAVGMATN+P HNL E+ Sbjct: 135 AESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREI 194 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 A IDNP+I +D L + I+GPDFPTG I G+ GI+ AY TGRG I++RG IE Sbjct: 195 ASAISAYIDNPEITIDELCKHIKGPDFPTGGTIFGKKGIRQAYKTGRGKILVRGRFTIEV 254 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRG 317 +E I+ TE+PYQVN ++ +I EL R K I IA++ DE SDR G R+VIELKRG Sbjct: 255 DKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDETSDRTGLRIVIELKRG 314 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A V+LNQL+ T+LQS F V +AL +P+ TL +++ FV R EVV RRT++ L Sbjct: 315 AITKVVLNQLFAKTALQSSFGVINLALVEGRPQTLTLKDLVRCFVNHRIEVVTRRTRFDL 374 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 KA +RAH+L L +A+ N+DEV+ IIR S + TA+ LM+R Sbjct: 375 RKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKR----------------- 417 Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497 G D EVQ++AI++++L RLT L D+R EL L I I D+L ++ Sbjct: 418 ---FGFD------EVQSQAIVDMQLKRLTNLEIKDLRKELEELEILIAHLKDLLEHPEKI 468 Query: 498 LGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 ++K E + D+ RRT IV + + ++ ED I +E+MV+ +S+LGY+KR+P+S Y Sbjct: 469 RALVKDETNEIADKFGDERRTDIVADEVEELNIEDLIQKEEMVILISNLGYIKRIPVSAY 528 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 ++Q RGGKG + + ++DF+ +F STH ++F ++ G Y KV +P S +RG Sbjct: 529 KSQNRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGS 588 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + ++LS++ E IT ++ E S Y++ AT G V++ +F G IA+ Sbjct: 589 HIKSLLSVSGDEEITAVVSLKEFSDST---YLLMATAAGVVKKVTTDNFQNAKTRGIIAI 645 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 KLD D+++S T +++I+L T+ Q +R IR GR S GV GI LA+GD++ Sbjct: 646 KLDDGDKLVSAILTTGKDEIMLITRHAQALRMTEEEIRPL-GRASRGVAGIKLAQGDELT 704 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 ++ Q+ LI Sbjct: 705 GA----------------LRVADNQKMLI------------------------------- 717 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 ++E G+GKR +F R+ G R +S+ + G +V + V D+D+++ + Sbjct: 718 ------MTENGYGKRVEFSEFTPHGRATGGQRIYTLSE--KTGEVVGLLTVLDDDEVVCI 769 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIF 883 + +G IRV V+ I I R+ +GV + Sbjct: 770 TGQGKTIRVNVDSISIMGRSAQGVRVL 796 Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 20/228 (8%) Query: 683 EILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 E L++E Q+ + ++L + LG R P+SA + R G +LA+ D + I Sbjct: 497 EELNIEDLIQKEEMVILISNLGYIKRIPVSAYKS-QNRGGKGSNSANLAEDDFIDQ--IF 553 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE 797 + DY I ++ + L + E + S ++ +S EE + LKE Sbjct: 554 TASTHDY---IMFITNEGKAYWLKVHEIPEASRTSRGSHIKSLLSVSGDEEITAVVSLKE 610 Query: 798 ----QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 ++L + G K+ ++ +F+ N +GI A K+++ LV+ D+I Sbjct: 611 FSDSTYLLMATAAGVVKKVTTDNFQ--NAKTRGIIAI---KLDDGDKLVSAILTTGKDEI 665 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 +L++ +R+ EIR RA++GV A+ + + R+ +++ Sbjct: 666 MLITRHAQALRMTEEEIRPLGRASRGVAGIKLAQGDELTGALRVADNQ 713 >gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985] gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985] Length = 826 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 362/901 (40%), Positives = 511/901 (56%), Gaps = 94/901 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL M G ++ YVK A Sbjct: 14 IEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAMQDQGFRPDRGYVKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R E MG YHPHG+ AIYDAL RMAQ WSLR L++GQGNFGS D AA RYTE RL Sbjct: 74 RPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEARL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG +EP VL AR PN+LVNG GGIAVGMATNIP HNL Sbjct: 134 APLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSGGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV D +++ D D L+A+ EI++GPDFPT +I+G G+ +AY TGRGSI +R Sbjct: 194 REVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGTDGVHDAYTTGRGSIRMR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV +E+ S R +V+TE+PYQVN M+ IAE VR+ +I I+ + DE SDR G R+ Sbjct: 254 GVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGISAIDDETSDRIGMRI 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+A+ P L IL+ ++A + EV+V Sbjct: 314 VVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLDQILRLYIAHQIEVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR LM+ L Sbjct: 374 RRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARAGLME----------L 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL ++L RL L R I +EL + I + DI Sbjct: 424 LD----------------VDEIQADAILAMQLRRLAALERQKIIDELAEIEEAIADYQDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + D RRTRI+ ++ DED I RED+VVT++ GY KR Sbjct: 468 LARPERQRAIVRDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAREDVVVTITETGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S Sbjct: 528 TKTDLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTRGRVYRIKAYELPETS 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+L E+I ++ E S Y+V ATK G +++KL++F Sbjct: 588 RAARGQHVANLLALQTDEKIAQVIHLQTYEDSP---YLVLATKRGLTKKSKLTEFDSNRS 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G IA+ L DE++ C+ ++D+LL ++ GQ +RF + ++ GR + GV G+ Sbjct: 645 GGLIAVNLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQLRPMGRATSGVLGMRF 704 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 + DQ+++M +V Y+ + SG + T+L + V+G Sbjct: 705 NEDDQLLAMNVVRDG--------AYLLVAT------SGGYAKRTAL-GEYPVQGR----- 744 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 G G T YD R R G LV V+D Sbjct: 745 ----------------GGKGVLTVQYDRR---RGG----------------LVGAVIVDD 769 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909 + ++ ++ G +IR ++R A R TKGV + + + +R+++V R E D AE Sbjct: 770 DTELYAITQGGGVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIAVARNDE----DSAEVA 825 Query: 910 E 910 E Sbjct: 826 E 826 >gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 893 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 357/912 (39%), Positives = 514/912 (56%), Gaps = 104/912 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 23 IQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASFSKSS 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG++AIYDALAR+ Q WS+R L+ GQGNFG+ PAA RYTEC++ Sbjct: 83 RVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAAPRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +D+VDF+ NYDG QEPV+L AR+PN+LVNG GIAVGMAT IP HNL Sbjct: 143 APLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ G +++PD LDAL+E I GPDFPTGA ILGR GI++AY TGRGSI R Sbjct: 203 REIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ ++ IAD+RDE S R G R+ Sbjct: 263 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ T LQ F NM+AL P +L G ++ +V+ + +V+V Sbjct: 322 VIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLDGFVRHWVSHQIDVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+++ L KA +R H+L GL A+ LD V+ +IR SP E AR LM Sbjct: 382 RRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLM------------ 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E Q AIL L+L RL L R I+ E L +K+ +I Sbjct: 430 --------------GLLDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++S R GI+ EL + ++ RRTRIV +M ED I ED+VVT++ GY KR Sbjct: 476 IASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPEEDVVVTITRSGYAKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP G Sbjct: 536 TRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRWLLFFTNYGRVYRAKGYELPEGG 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 ++G+ + N+L+ GE I +M + D++ ++V AT+ G V++ +LS++ Sbjct: 596 RDSKGQHVANLLAFQPGEEIAQVMELQDYDQAD----FLVLATRRGLVKKTRLSEYNSNR 651 Query: 670 RSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 G IA+ L + DE++S + D+LL + GQ +RF +R GR + Sbjct: 652 SGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAGQSLRFHADDDTLRP-TGRATS 710 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ + D +++M +V + D D Sbjct: 711 GVTGMRFREDDYLLAMDVVDPSWQDAD--------------------------------- 737 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--SKINEIGA 840 + V+E G+ KRT+ D+ + R G G++ ++ ++ N +GA Sbjct: 738 -----------------LFVVTEGGYAKRTNVVDYPVKGRGGLGVKVANLVEARGNLVGA 780 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899 LV + D+++ + G ++R V E+ R T+GV +R+++V R E Sbjct: 781 LV----TDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVTFAKPDAGDRIIAVARSTER 836 Query: 900 --SEIVDEAEST 909 E VD A+S Sbjct: 837 DMEEAVDAADSA 848 >gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1] Length = 836 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 358/897 (39%), Positives = 509/897 (56%), Gaps = 92/897 (10%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + D E + V I EMQ SY+ YA++VI+GRA+P + DGLKPVHRR+L+ M + G Sbjct: 12 AGDGEGGGRVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFR 71 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 ++ +VKCAR+ G+VMG YHPHG++AIYDAL R+AQ WS+R LI GQGNFGS DP A Sbjct: 72 PDRSFVKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAA 131 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTECRL A +L D+ ++TVDF NYDG QEPVVL +R PN+L+NG GIAVGM Sbjct: 132 AMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGM 191 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 ATNIP HNL EV G ++NPD L+ALME I+GPDFPT +I+GR GI++AY Sbjct: 192 ATNIPPHNLREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLIVGRDGIESAYR 251 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGSI +R V +E + R +VVTE+PY VN ++E IA +VR+ +I I+++ DE Sbjct: 252 TGRGSIRMRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDE 311 Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 SDR G R+V+ LKR A A V+LN LY++T LQ F NM+++ P L I++ + Sbjct: 312 SSDRIGMRIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDGVPRTLRLDQIVRHY 371 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 V + EV+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 372 VRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVAR------- 424 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 LIDL + + E+Q +AIL+++L RL L R I +EL + Sbjct: 425 ------AGLIDL-------------LTVDEIQAQAILDMQLRRLAALERQKIVDELAEIE 465 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 EI + DIL+ R I++ EL + ++ RRTRIV D+ DED I ED+VVT Sbjct: 466 REIADYEDILTRPERQREIVRDELAEIVEQHGDDRRTRIVGYDGDVTDEDLIAVEDVVVT 525 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GY KR +YRAQ+RGGKG G ++ +D V F+ STH +LFF++ G VY+ Sbjct: 526 ITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRL 585 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + LP + ARG+ L N+L+L E I +M + ++ Y+V AT++G V++++ Sbjct: 586 KAYELPEANRTARGQHLANLLALQPDEEIAQVMQIKDYQA---RPYLVLATRNGLVKKSR 642 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719 L+DF G I + L DE++ C+ ++D+LL + GQ +RF + A+R GR Sbjct: 643 LTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQSIRFTATDDALRPM-GR 701 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV G+ GD+++++ + I DT + + Sbjct: 702 ATSGVLGMRFNSGDKLLALGV------------------------IRPDTYLLVATTGGY 737 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 + I + Q G G T YD R R T Sbjct: 738 AKRTPIEDYPVQ------------GRGGKGVLTLQYDRR---------RGT--------- 767 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 LV V +D++ ++ G +IR E+R A R TKGV + + + +++V R Sbjct: 768 -LVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGESSTLLAVAR 823 >gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense] gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense] Length = 819 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 340/885 (38%), Positives = 528/885 (59%), Gaps = 88/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++ V N Y K A Sbjct: 13 IKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELSVYSNSSYKKAA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RM+QD+S R L++G GNFGS+DG AA RYTE ++ Sbjct: 73 RIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHKAAAMRYTEVKM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A L+ ++ K+T++F NYDGS +EP+VL PN+L+NG GIAVGMAT IPTHNL Sbjct: 133 AKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAVGMATKIPTHNL 192 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVDG +A I + +I + LM+ I+GPDFPTG +LG G++NAY TG+GS++I+ +H Sbjct: 193 AEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLGLKGLENAYKTGQGSVIIKAKTH 252 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + G + IVVTEIPYQ+ K+A++EKIA LV++K I I DLRDES RQG ++VIELK Sbjct: 253 ILEEKG-KTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDESSRQGMKIVIELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A++ VILNQLY+++ L+ F +NMVAL KP+ +L IL+AF FR +V+ ++ + Sbjct: 312 KNANSKVILNQLYKHSPLRISFGINMVALVDKKPQLVSLKTILEAFFNFRIQVINKQKFF 371 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLI 434 L KA+ R H++ + ++ +++I+ S + + A+++LM Q ++A Sbjct: 372 ELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQYQFDA---------- 421 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +Q++AILE+ L RL+ + E L EI EC I+ S+ Sbjct: 422 -----------------IQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAECQSIIESQ 464 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + I+++ELL +K + RRT + + LD +DED I ++++++T+++ GY+K Sbjct: 465 PKKEKILEKELLEIKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNKGYIKVTDA 524 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YR Q+RGGKG +G+ + +EDF+ L STH +LFF++ G VY+ K +++ + + Sbjct: 525 EFYRQQKRGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSS 584 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G L+N+L+L GE +T+ + N Y+ FATK G V++ L ++ I +GK Sbjct: 585 KGIPLVNLLNLKPGETLTSCASVKNFDQPDN--YLFFATKKGIVKKTSLKEYSNIRENGK 642 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ L DE+L+V +I+L + G + F S R R S GV G+ L KG+ Sbjct: 643 IAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTRK-TSRQSQGVIGMDLKKGE 701 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +I A+ D Sbjct: 702 FLIGAALFDPNSKD---------------------------------------------- 715 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 Q IL ++EKG+GK TS +RI +R+GKG + ++ ++ G L+A+ + + Sbjct: 716 ----QSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKIN--SKTGRLIALKTAASSQDL 769 Query: 854 ILVSDKGTLIRVPVNEIR-IASRATKG--VVIFSTAKDERVVSVE 895 I+ SDKG +IRV +++I+ +AT+G ++ T +V+VE Sbjct: 770 IISSDKGQVIRVSISDIKNTKHKATQGTKIIKLKTGHKAVLVAVE 814 >gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] Length = 839 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 333/902 (36%), Positives = 523/902 (57%), Gaps = 88/902 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ ++ Sbjct: 14 ELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDR 73 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+R Sbjct: 74 PFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQR 133 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL K A LL D+ KDTVDF NYDG QEP VL A +PN+L NG GIAVGM+T+ Sbjct: 134 YTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTS 193 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP+HNL E++ G + +IDNPD ++ L+ +I+GPDFPTGA I+ GI++ + TG+G++V Sbjct: 194 IPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNVV 253 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR IE+ R +VVTEIPY VNK +++EKI ELV+ + I IAD+RDES R+G R Sbjct: 254 IRSKVSIEQLP-TRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGIR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+KR +V+LNQL++ T LQ F VNM+AL P+ + L ++ + +V+ Sbjct: 313 LVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R+T++ L K ++R H+L GL IA N+DEV+ II+ S N + A L +R Sbjct: 373 IRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L E+Q RA+L++RL L+ L + ++ E L I+ C Sbjct: 424 -----------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQ 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 +L+ + L +IK++L + ++ PRR+ I+ G+ D++DED I +E++V+T+S GY+ Sbjct: 467 VLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGYL 526 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P Sbjct: 527 KRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPP 586 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 G +G +N++ +++ E+I ++ + + N Y F TK+G ++R LS+F I Sbjct: 587 GFRTNKGIPAVNLIKIDKDEKICALISV----NDYQNGYFFFCTKNGTIKRTSLSEFANI 642 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 GK A+ D + SV + ++DI + + G VRF +R + R ++GV GI+ Sbjct: 643 LSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGIN 701 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + + V N S N S Sbjct: 702 LNQCEFV-----------------------------------------NGLSTSSNGS-- 718 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V Sbjct: 719 ----------LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTVF 766 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 N+ ++++S G ++R+ + ++ + T GV + + ER+ +V ++ E + + Sbjct: 767 GNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTTA 826 Query: 909 TE 910 TE Sbjct: 827 TE 828 >gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402] Length = 815 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 341/900 (37%), Positives = 521/900 (57%), Gaps = 101/900 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 7 KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RY Sbjct: 67 TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMATN+ Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++ Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G R Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R +VV Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S + +TA+ LM+R Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMER--------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G D +VQ +AI++++L RLT L +D+R EL L + I D Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLGY+ Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S +RG + ++LS++ E IT ++ E + + Y++ AT G V++ +F Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFANA 637 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G IA+KLD D+++S +++I+L T+ GQ +R IR GR+S GV GI Sbjct: 638 KTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTGIK 696 Query: 729 LAKGDQVI-------SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L+ D++ + +++ + Y +R+ + SA R G Sbjct: 697 LSSEDELTGALRVTENQKMLVMTENGYGKRVEF-SEFSAHGRGTGG-------------- 741 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 Q I T+SEK G + Sbjct: 742 ----------------QRIYTLSEK-------------------------------TGEV 754 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + V D+D+++ ++ +G IR+ V+ + R+ +GV I + ++ ++ + E Sbjct: 755 VGLLTVFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDE 814 >gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160] gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160] Length = 822 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/894 (39%), Positives = 510/894 (57%), Gaps = 93/894 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ YVKCA Sbjct: 10 IEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRPDRSYVKCA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG++AIYDAL R+AQ WS+R LI+GQGNFGS DP AA RYTE RL Sbjct: 70 RVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L ++ ++TVDF+PNYDG QEP+VL R PN+L+NG GIAVGMATN+P HNL Sbjct: 130 TPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMATNMPPHNL 189 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV D ++D+P+ + L A ME ++GPDFPT +I+GR GI+ AY TGRGS+ +R Sbjct: 190 REVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIVGREGIEEAYRTGRGSVRMR 249 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ + R Q+VVTE+PYQVN + E IAE VR+ R+ I+++ DE SDR G R+ Sbjct: 250 AVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADESSDRVGRRL 309 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI L+R A A V+LN LY++T LQ+ F NM+++ P L +++ +V + EV+ Sbjct: 310 VITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDGVPRTLRLDELVRYYVLHQIEVIQ 369 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L GLA A+ LD V+ +IR S + + AR LM DL Sbjct: 370 RRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLM----------DL 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL+++L RL L R I +EL L I + I Sbjct: 420 LD----------------IDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAI 463 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S R II+ EL + ++ RRT+ V D+ ED I E++VVT++ GY KR Sbjct: 464 LDSPERQRQIIRDELAEIVEKYGDDRRTKFVANDGDVSMEDLIAEEEVVVTITRTGYAKR 523 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+QRRGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 524 TKSDLYRSQRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEAN 583 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG + NIL+ E+I +M + + Y+V AT +G V++ +L+DF Sbjct: 584 RTARGAHVANILAFQPDEKIAQVMQIKDYGVAP---YLVLATANGQVKKTRLTDFDSPRS 640 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L DE++ + D+LL T+ +RF + +R GR + GVRGI+ Sbjct: 641 GGVIAINLRESDELVGAALIDPDQDLLLVTRKAMSIRFKADDATLRPM-GRATEGVRGIA 699 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L+ D ++SM +V + V+ ++ E Sbjct: 700 LSPDDSLLSMIVV------------------------------------EEGVDVLVATE 723 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 R GF KRT ++ R GKG+ D + G LV V Sbjct: 724 R-----------------GFAKRTGIENYPAQGRGGKGVLTADPK--SRKGNLVGALSVR 764 Query: 849 DNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901 D++ ++ G +IR PVN +R RAT GV + + +D +V++ R +++ Sbjct: 765 LGDELYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPEDVSIVAIARTTDND 818 >gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728] gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728] Length = 831 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 330/736 (44%), Positives = 464/736 (63%), Gaps = 43/736 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + +MQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+GM G ++ YVKC+ Sbjct: 19 IEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYGMYDGGYRPDRGYVKCS 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG+YHPHG++AIYD+L RMAQ WS+R LI+GQGNFGS DP AA RYTE RL Sbjct: 79 RVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTESRL 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +D+VDF PNYDG EP VL AR PN+LVNG GIAVGMAT IP HNL Sbjct: 139 DPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVNGSEGIAVGMATKIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +DN + D L+AL+++++GPDFPT A+I+GR GI++AY TGRGSI +R Sbjct: 199 REVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIVGRAGIEDAYRTGRGSIRMR 258 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VVTE+PYQVN + E+IAELV++ ++ IAD+R+ES R G R+ Sbjct: 259 AVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKLNGIADIREESSGRTGMRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++ +VA + EV+V Sbjct: 319 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFVRHYVAHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL A+ LD V+ +IR SP+ E ++ LM Sbjct: 379 RRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEESKTGLMN----------- 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL+++L RL L R I +EL + +I + DI Sbjct: 428 ---------------LLEVDEIQATAILDMQLRRLAALERQKILDELAEIEAKIADLEDI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ R IIK EL ++ + RRT+IV EG ++M ED I RED+VVT++ GY Sbjct: 473 LAKPERQRQIIKDELGAIVAKWGDERRTKIVPFEGEVNM--EDLIAREDVVVTITRGGYA 530 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + +YR+QRRGGKG SG ++ +D V+ F+ STH +LFF++ G VY+ K + LP Sbjct: 531 KRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPE 590 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQ 667 S ARG+ + N+L+ E+I +M S ++ Y+V AT+ G V++ KL+DF Sbjct: 591 ASRTARGQHVANLLAFQPDEQIAQVMQI----SGYDVAPYLVLATRRGLVKKTKLTDFDS 646 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725 G I + L DE++ ++D+LL +K Q +RF S ++R GR + GV Sbjct: 647 PRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASDESLRPM-GRATSGVI 705 Query: 726 GISLAKGDQVISMAIV 741 G+ + D++++M +V Sbjct: 706 GMRFVEADELLTMEVV 721 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 95/208 (45%), Gaps = 20/208 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L+ + + R GG G+ +RD D V +++ +L S + Sbjct: 627 LVLATRRGLVKKTKLTDFDSPRTGGV--IGINLRDGDEVVGAALINPDDDLLLVSKKAQA 684 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + F+ ++ R P R + + + + + + T+ E + ++ AT Sbjct: 685 IRFMASDESLR-----PMGRATSGVIGMRFVEADELLTM------EVVRGGMDILVATSG 733 Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ Q R GK A + R ++ + T ++++ T G +R P+ Sbjct: 734 GYAKRTPVEEYPQQGRGGKGVLTAKITERRGNLVGALSVTPDDELFAITSEGGVIRTPVK 793 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L +G +++MA Sbjct: 794 PVRRTTDRNTMGVKLMDLPEGVSLLAMA 821 Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 15/146 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR++I + I + D EG ++ E +L +E ++T++ G+ KRT Sbjct: 479 QRQIIKDELGAIVAKWGDERRTKIVPFEGEVNME---DLIAREDVVVTITRGGYAKRTKV 535 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D ++ ++KG + R E+ AS Sbjct: 536 DLYRSQRRGGKGVSGATLKQDDLVSHF---FVCSTHDWMLFFTNKGRVYRAKAYELPEAS 592 Query: 875 RATKG---VVIFSTAKDERVVSVERI 897 R +G + + DE++ V +I Sbjct: 593 RTARGQHVANLLAFQPDEQIAQVMQI 618 >gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578] Length = 809 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 353/883 (39%), Positives = 507/883 (57%), Gaps = 86/883 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+ ++ + K Sbjct: 8 VVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKSG 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R ++ GQGNFGS+DGDPPAA RYTE +L Sbjct: 68 RIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAKL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVDF PNYD S +EP VL A P +L+NG GIAVGMATNIP HNL Sbjct: 128 HKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV AVIDNP+I L+ ++GPDFPTG +I G+ GI++AY TG+G +V+R Sbjct: 188 GEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRARLS 247 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E RE IVVTEIPY VNK+++LE++A LVR+K+I I+++RDESDR G R+V ELK Sbjct: 248 LETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFELK 307 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG V++N+L+ T LQ+ F VN +AL G KP+ TL I++ F++ R+EVV RR +Y Sbjct: 308 RGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRRAQY 367 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL IA+ N+DEV+ II+ S ++AR LM+R Sbjct: 368 DLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR--------------- 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 LSE Q +AIL++RL +LT L I EL + I+E ++L S Sbjct: 413 -----------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLGSER 461 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++L ++K E L + RRT IV E D++ ED I +EDMVV VS G +KR+P+S Sbjct: 462 KILEVVKNETLELAKGYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRMPVS 521 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 YR Q RGGKG G + +D V+ LF+ STH +LF S+ G Y KV +P GS ++ Sbjct: 522 AYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVSQ 581 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK++ +++ L+ E+++ ++ E+ V T G +R + G I Sbjct: 582 GKSIRSLVQLSPDEQVSAVVSV---ETFEEEREVFMITAKGLAKRLPVPALSNARTRGVI 638 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L+ D ++ + ++++ T+ G +R R GR + GV + L GD+ Sbjct: 639 AIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEPGDE 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V C G + E ++L Sbjct: 698 V-----------------C-----------------------------GAVPVEEGKDL- 710 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 L V+ G+GKR F R KG VS G L AV V D ++ Sbjct: 711 ------LLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSA--RTGELAAVLSVEAKDDVM 762 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 +V+ +G +I++ V +I + R GV + + K + VVSV+R+ Sbjct: 763 IVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRV 805 >gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6] gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6] Length = 876 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 358/903 (39%), Positives = 514/903 (56%), Gaps = 95/903 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 29 VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R L GQGNFGS D AA RYTE ++ Sbjct: 89 RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF+ NYDG QEP +L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NP + L+ L+ ++GPDFPTGA ILG GI++AY TGRGS+ +R Sbjct: 209 REVADGVQWYLANPAATREELLEELLRRVKGPDFPTGATILGHKGIEDAYRTGRGSVTMR 268 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ +R +VVTE+PYQ N + KIAELV++ +I IADLRDE S R G R+ Sbjct: 269 AVVNVEELQ-NRTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 327 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS FS NM+A+ P +L ++ +V + +V+ Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDVIA 387 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA + AH+L L A+ LDEV+ +IR S E AR LM+ Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME----------- 436 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + E+Q RAIL+++L RL L R I++ + L I E I Sbjct: 437 --LLD-------------IDELQARAILDMQLRRLAALERQKIQDRHSELEALIAEYNAI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+S R II EL + D+ RRT+I+ G DM ED I E+MVVT++ GYVK Sbjct: 482 LASEERQREIISTELGEIVDKHGDDRRTKILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + L Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ E I ++ + + S Y+V ATK G V++ +L D+ Sbjct: 602 GRDAKGQHVANLLAFQPDEHIAQVLDLKDYQQSP---YLVLATKRGLVKKTRLEDYDTNR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D+ L +++GQ +RF + A+R GR + GV G+ Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLFLVSRMGQSIRFTATDDALRPM-GRATSGVTGM 717 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D++ L D +G+ Sbjct: 718 KFREDDEL---------------------------------------LAADVVTDGS--- 735 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ V+E G+ KRT+ ++R+ R G GI+ + E G LV V Sbjct: 736 -----------FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQE--ERGHLVGALIV 782 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 + D++++V + G ++R V + R T GV+ K++R++ V R E + DE E Sbjct: 783 QEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEDE-E 841 Query: 908 STE 910 S E Sbjct: 842 SAE 844 >gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1] gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1] Length = 889 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 357/902 (39%), Positives = 516/902 (57%), Gaps = 97/902 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 28 VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 87 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+ AIYDAL R+ QDW++R L GQGNFGS D AA RYTE ++ Sbjct: 88 RVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 147 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A ++ D+ ++TVDF+ NYDG QEP +L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 148 AQLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 207 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +DNP + L+E I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 208 REVAEGVQWALDNPTATREELLEALLLRIKGPDFPTGATILGHKGIEDAYRTGRGSITMR 267 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIAELV++ +I IADLRDE S R G R+ Sbjct: 268 AVVNVEELQG-RTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ FS NM+A+ P +L ++ +VA + +V+ Sbjct: 327 VIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLAIVDGVPRTLSLDAFIRHWVAHQMDVIA 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA + AH+L L A+ LDEV+ +IR S E AR LM+ Sbjct: 387 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAAREGLME----------- 435 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q RAIL+++L RL L R I++ + L I+E I Sbjct: 436 ---------------LLEIDELQARAILDMQLRRLAALERQKIQDRHSELEAMIQEYNAI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+S R II +EL + + RRT I+ G DM ED I E+MVVT++ GYVK Sbjct: 481 LASEERQRQIISEELAEIVAKHGDDRRTHILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 540 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + L Sbjct: 541 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELAEA 600 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ E I ++ + + + Y+V ATK+G V++ +L D+ Sbjct: 601 GRDAKGQHVANLLAFQPDEHIAQVLDLRDYQQAP---YLVLATKNGLVKKTRLEDYDTNR 657 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D+LL ++ GQ +RF + A+R GR + GV G+ Sbjct: 658 TAGVIAINLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTATDDALRPM-GRATSGVTGM 716 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+ L++ D + S Sbjct: 717 KFREDDE-----------------------------LLAADVVQDGS------------- 734 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846 F+ V+E G+ KRT+ ++R+ R G GI+ V+K+ E G LV Sbjct: 735 -----------FVFIVTEGGYAKRTAVDEYRLQGRGGLGIK---VAKLAEDRGDLVGALI 780 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI-VDE 905 V + D++++V + G ++R V + R T GV+ K++R++ V R E + V+E Sbjct: 781 VQEEDEVLVVMEGGKVVRSAVTGVPAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEVEE 840 Query: 906 AE 907 +E Sbjct: 841 SE 842 >gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304] gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304] Length = 898 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 351/917 (38%), Positives = 522/917 (56%), Gaps = 112/917 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S+ + EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M G ++ Y KC+ Sbjct: 21 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS DP AA RYTECR+ Sbjct: 81 RVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A L+ D+ KDTVDF PNYDG QEP VL +R+PN+LVNG GIAVGMATNIP+HN+ Sbjct: 141 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHNM 200 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +G +++P+ L+ L+ II+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 201 REIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ +G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 261 AVVNTEEING-RLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQRL 319 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY++T LQ F NM+AL P +L ++ ++ + +VV Sbjct: 320 VLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQLQVVE 379 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ ++EV+ +IR SP+ E AR LM DL Sbjct: 380 RRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLM----------DL 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + ++Q AIL ++L RL L R I +E L I++ DI Sbjct: 430 LD----------------VDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDI 473 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ E+ + D+ RRT+I+ +M ED I E++VVTV+H GY+KR Sbjct: 474 LAKPDRQRKIVGDEMDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIKR 533 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ RGGKG G +R++D V F+ STH +LFF++ G VY+ K + +P GS Sbjct: 534 TKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGS 593 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++G+ + N+L L E+I ++ + +++ Y+V AT+ G +++ +L ++ + Sbjct: 594 RDSKGQHVANLLQLGPDEKIQQVLSIKDYQTAS---YLVLATRSGKIKKTRLDEYDSARQ 650 Query: 671 SGKIAMKL---------DSR-------DEILSVETCTQENDILLTTKLGQCVRFPI--SA 712 G IA++L D DE++ C +++I++ ++ G V+F Sbjct: 651 GGLIAVRLREIEGAFRTDKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQT 710 Query: 713 IRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +R GR + GV+ + GD ++ V+ D D Sbjct: 711 LRPM-GRQTAGVQAMKFRGKPGDDLLLSMDVVPQGTDSD--------------------- 748 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 +L V+ +GF KRT+ ++R+ R+G G++A Sbjct: 749 -----------------------------LLVVTNEGFAKRTALSEYRLQGRNGYGVKAI 779 Query: 831 DV--SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 ++ + N IGA+V V ++DQ++ + G +IR V+EI+ R T+GV + K Sbjct: 780 NLVEGRGNLIGAIV----VAEDDQVMAIMKSGKVIRSDVSEIKRTGRNTQGVTLAKPDKG 835 Query: 889 ERVVSVERIRESEIVDE 905 + ++SV R E+E DE Sbjct: 836 DEIISVARNAETEDQDE 852 >gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51866] gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51866] Length = 861 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 338/908 (37%), Positives = 523/908 (57%), Gaps = 93/908 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SDE ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G Sbjct: 2 SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + +VK +R + MG++HPHG++AIYD L R+AQ WS+R +++GQGNFGS D PAA Sbjct: 62 ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTEC+L A ++ D+ +DTV+F+PNYDG EP VL +R PN+L+NG GIAVGMA Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL E+ + +++NPD L+A ME ++GPDFPT A+I+G GIK+AY T Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +RGV+ IE+ G R IV+TE+PY VN ++ IA+ + ++ + + DE Sbjct: 242 GRGSIKMRGVTSIEEEKG-RTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+ LKR A V+LN L+++++L+S F VNM+++ P L +L + Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRTK+ LN A RAH+L GL A+ LDEV+ +IR S E AR+ LM+ Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+D + E Q + IL+++L +L L R I +EL L Sbjct: 418 -------LLD----------------VDEEQAQHILDMQLRKLAALERQKIIDELAELEN 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R I++ EL + D+ RRT++V D+ DED I +E++VVT+ Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR + YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ + N+L GE I ++ +S + Y+V AT+ G V++++L Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720 +D+ +G IA+ L+ D ++ + E+D+LL ++ GQ +RF + +R GR Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ D+++SM + +D DY Sbjct: 691 TAGVKGMRFKDDDELLSMCVT--SDGDY-------------------------------- 716 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L +E G+GKRT+ ++ R G G+ T + + G Sbjct: 717 -------------------LLVATEGGYGKRTAMEEYPAKGRGGLGV--TTLKYQPKRGK 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L+ VN+ D+I+ ++ G +IR V++IR +SR+T GV + + + +++R E Sbjct: 756 LIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVED 815 Query: 901 EIVDEAES 908 ++AE+ Sbjct: 816 SGEEQAEA 823 >gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680] gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680] Length = 864 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 332/757 (43%), Positives = 468/757 (61%), Gaps = 47/757 (6%) Query: 1 MTEHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56 MT+ S EEE I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+ Sbjct: 1 MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60 Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116 L+ M G K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GN Sbjct: 61 LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120 Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176 FGS DP AA RYTEC++ + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+ Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180 Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVIL 232 NG GIAVGMATNIP HNL EV G ++NP+ LDAL+E I+GPDFP+GA+++ Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240 Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292 GR GI+ AY TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ + Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299 Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351 + IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359 Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411 +L ++ +V + EV+VRRTK+ L KA +RAH+L GL A+ +DEV+ +IR S E Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419 Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 AR LM G + + E+Q AILE++L RL L R Sbjct: 420 IAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453 Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531 I E + L +I E IL+S R GII +EL ++ ++ RR+++V DM ED Sbjct: 454 KIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIED 513 Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 I ED+VVT++ GY+KR YR+Q+RGGKG G ++ +D V F+ +TH +LF Sbjct: 514 LIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLF 573 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651 F++ G VY+ K + LP ARG+ + N+L+ E I I+ + E+ Y+V A Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLA 630 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706 TK G V++ L D+ G IA+ L S DE++ E + E+D+LL +K Q + Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSI 690 Query: 707 RFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 RF + A+R GR + GV+G+S +GD+++SM +V Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVV 726 >gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Haloferax sp gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2] Length = 858 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 369/900 (41%), Positives = 521/900 (57%), Gaps = 79/900 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV N + K + Sbjct: 19 VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIYD LARMA+D+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 79 SIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LLDD+ KDTVDF+ NYD QEP VL + +PN+LVNG GIAVGM+TNIP HNL Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +I+NPD + LME I+GPDFPTGA I+ R + AY TGRG + +R Sbjct: 199 GEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVARNAVHKAYKTGRGRVRVRADYD 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 + + G +IV+ E+PYQ NKA ++E+IA+ V E +I I D+RDES+R G RVVIELK Sbjct: 259 VFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESERDGIRVVIELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA A+V+ NQL L+S F V +AL +P+ TL L+ ++ R +VV RR++Y Sbjct: 316 RGAMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSEY 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G A+ N+D+VV IR S + + A+ L D + L Sbjct: 375 ELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVDGEPL----- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q I+ ++L LT + +I E + I+ IL +S Sbjct: 430 ---------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQS 480 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +I+ ELL +KDE RRT V ++ D I ED+VV VS Y+KR+P+S Sbjct: 481 ELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVSR 540 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +RAQ RGGKG G +++ D V+ +F+ +TH +L F++ G VY+ K +++P S ARG Sbjct: 541 FRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTARG 600 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K+ +N+L + GE IT ++ + E Y+ T++G ++R F I +G IA Sbjct: 601 KSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGIIA 658 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 KLD DE++ VE E D+++ T+ G +RF +R GR++ GVRGI L D V Sbjct: 659 TKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAM-GRSARGVRGIKLEGDDVV 717 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +A + A H S Sbjct: 718 AGVAAIDEA------------HHS------------------------------------ 729 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +ILTV+E G+GKRT +R +R+GKG+ D+ G + A+ V + D +++ Sbjct: 730 ---WILTVTENGYGKRTDLDAYRTQSRNGKGL--IDIKANERNGPVCAINTVGEGDHLVV 784 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAESTE 910 +SD+G ++R PV +I R T G+++ + + V SV+ I E+E +D+A+S E Sbjct: 785 MSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVIPAAMTTEAEELDDADSVE 844 >gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51867] gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium glucuronolyticum ATCC 51867] Length = 861 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 337/908 (37%), Positives = 523/908 (57%), Gaps = 93/908 (10%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SDE ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G Sbjct: 2 SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 + +VK +R + MG++HPHG++AIYD L R+AQ WS+R +++GQGNFGS D PAA Sbjct: 62 ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTEC+L A ++ D+ +DTV+F+PNYDG EP VL +R PN+L+NG GIAVGMA Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNL E+ + +++NPD L+A ME ++GPDFPT A+I+G GIK+AY T Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGS+ +RGV+ IE+ G R IV+TE+PY VN ++ IA+ + ++ + + DE Sbjct: 242 GRGSVKMRGVTSIEEEKG-RTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+V+ LKR A V+LN L+++++L+S F VNM+++ P L +L + Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRTK+ LN A RAH+L GL A+ LDEV+ +IR S E AR+ LM+ Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L+D + E Q + IL+++L +L L R I +EL L Sbjct: 418 -------LLD----------------VDEEQAQHILDMQLRKLAALERQKIIDELAELEE 454 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I + DIL+ R I++ EL + D+ RRT++V D+ DED I +E++VVT+ Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GY KR + YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + +P S ARG+ + N+L GE I ++ +S + Y+V AT+ G V++++L Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQI---QSYEDEPYLVLATRKGRVKKSRL 631 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720 +D+ +G IA+ L+ D ++ + E+D+LL ++ GQ +RF + +R GR Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+G+ D+++SM + +D DY Sbjct: 691 TAGVKGMRFKDDDELLSMCVT--SDGDY-------------------------------- 716 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 +L +E G+GKRT+ ++ R G G+ T + + G Sbjct: 717 -------------------LLVATEGGYGKRTAMEEYPAKGRGGLGV--TTLKYQPKRGK 755 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 L+ VN+ D+I+ ++ G +IR V++IR +SR+T GV + + + +++R E Sbjct: 756 LIGALAVNEGDEIMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNLPNGVSLYAIDRNVED 815 Query: 901 EIVDEAES 908 ++AE+ Sbjct: 816 SGEEQAEA 823 >gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109] gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109] Length = 838 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 346/888 (38%), Positives = 507/888 (57%), Gaps = 93/888 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EMQNSY+ YA++VI+GRA+P++RDG+KPVHRRIL+ M G + YVK A Sbjct: 15 IEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAMFDNGHRPERGYVKSA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + E MG YHPHG++AIYD L RMAQ WS+R L++GQGNFGS D AA RYTECRL Sbjct: 75 KPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDGAAAMRYTECRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTV F+PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 135 TPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D +++NP L+A M ++GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 195 NELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIVGEKGIDDAYRTGRGSIRMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 G + IE+ G R+ IV+TE+PYQVN ++ IAE VR+ ++ I+ + DE SDR G R+ Sbjct: 255 GKAEIEE-EGSRQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGISKIDDESSDRVGLRI 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ+ F NM+++ P L +L +V + +V+V Sbjct: 314 VVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSLYVKHQIDVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA + AH+L GL A+ LDEV+ +IR S + AR LM DL Sbjct: 374 RRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIAREGLM----------DL 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL ++L RL L R I ++L L I + DI Sbjct: 424 ----------------LTVDEIQANAILAMQLRRLAALERQKIIDQLAELERIIADLEDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I++ EL + ++ RRT+IV D+ +ED I RE++VVT++ GY KR Sbjct: 468 LAKPERQRAIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIARENVVVTITSTGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR QRRGGKG G +R +D V F+ STH +VLFF+++G +Y+ K + LP + Sbjct: 528 TKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNMGRMYRLKTYELPEAT 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L GE+I ++ +S + Y+V AT G V++++L+D+ Sbjct: 588 RTARGQHVANLLEFQPGEQIAQVIQI---QSFEDAPYLVLATAQGRVKKSRLTDYATTRS 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 SG IA+ L+ D+++ + C+ E+D+LL ++ GQ +RF +R GR + GV G+ Sbjct: 645 SGLIAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETLRPM-GRATAGVYGMR 703 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 DQ+++M +V + DS++ Sbjct: 704 FRGEDQLLAMTVV----------------------------------QEDSAL------- 722 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 F+ T G+GKRT ++ R G G+ A K G L+ V Sbjct: 723 ----------FVATSG--GYGKRTPMEEYPAKGRGGLGVVAFKYQKSR--GKLIGALTVT 768 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 ++D+I+ ++ G +IR VN+IR R+T GV + K +V+V+R Sbjct: 769 EDDEILAMTSAGGVIRTEVNQIRETGRSTMGVRLVDLDKGVELVAVDR 816 >gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 911 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 346/886 (39%), Positives = 504/886 (56%), Gaps = 76/886 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V +T E+QNS+L YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ + KC+ Sbjct: 38 VDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRGWNKCS 97 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L R+AQ W++R L+ GQGNFGS D AA RYTECR+ Sbjct: 98 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRYTECRM 157 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ + TVDF+PNYD EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 158 APLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNIPPHNL 217 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV + +++P+ L+A M ++GPDFP GA+I+GR GI++AY TGRGS+ +R Sbjct: 218 REVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIVGRKGIEDAYRTGRGSVTMR 277 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +IE+ R ++VVTE+PY N + +KIA+LV R+ I+D+RD+S R G R+ Sbjct: 278 AVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSARTGQRL 337 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 I LKR A V++N LY++T LQ F NM+AL P L ++ +V + EV+V Sbjct: 338 AIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDNVPRTLRLDQFIRYWVLHQIEVIV 397 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L +A AH+ GL A+ LDEV+ +IR SP E A ++ ++ L Sbjct: 398 RRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQA----------SAGLQKL 447 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D IDD VQ AIL ++L RL L R I +++ L I + DI Sbjct: 448 LD-IDD---------------VQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDI 491 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++R R I+ EL + + RRT+I+ D DED I +DMVVT++ GY KR Sbjct: 492 LANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDDDMVVTITRGGYAKR 551 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR QRRGGKG G +R +D V LF + H +LFF+ G VY+ K W+LP G Sbjct: 552 TRTDQYRPQRRGGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQLPEGG 611 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G + +LS E+I ++ S + Y+V ATK G V++ LS + + Sbjct: 612 RDAKGGHVAGLLSFLPDEKIAQVLAL---RSYEDAEYLVLATKQGLVKKTALSAYDSPRQ 668 Query: 671 SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGIS 728 +G IA+ + DE++ E +D+LL ++LGQ +RF ++ GR + GV G+ Sbjct: 669 AGLIAVNFRADDDELIGAELVDASDDVLLISRLGQAIRFRADDEQMRPMGRTTSGVTGMR 728 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 +GD+++SM++V A+R G S+E Sbjct: 729 FREGDELLSMSVV-----------------PAER--------------------GEASDE 751 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 E + + ++ TV+ GF KRT D+R+ NR G GI+A + +E G LV V Sbjct: 752 HADE-EDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMD--DERGHLVGGLVVT 808 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D+D++I + G + R V E+ R T GV + V+++ Sbjct: 809 DSDEVIAIKASGQVTRSSVAEVNPTGRDTMGVKFVGVRGKDEVIAI 854 >gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2] gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2] Length = 862 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 370/900 (41%), Positives = 521/900 (57%), Gaps = 79/900 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q GV N + K + Sbjct: 19 VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIYD LARMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 79 SIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LLDD+ KDTVDF+ NYD QEP VL + +PN+LVNG GIAVGM+TNIP HNL Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V +I+NPD + LME I+GPDFPTGA I+GR + AY TGRG + +R Sbjct: 199 GEVVDATVELIENPDATVADLMEHIKGPDFPTGANIVGRNAVHKAYKTGRGRVRVRADYD 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 + + G +IV+ E+PYQ NKA ++E+IA+ V E +I I D+RDESDR G RVVIELK Sbjct: 259 VFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESDRDGIRVVIELK 315 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A+V+ NQL L+S F V +AL +P+ TL L+ ++ R +VV RR++Y Sbjct: 316 RGVMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKETLEHYLDHRRDVVRRRSEY 374 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G A+ N+D+VV IR S + + A+ L + L Sbjct: 375 ELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVGGEPL----- 429 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q I+ ++L LT + +I E + I+ IL +S Sbjct: 430 ---------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQS 480 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +I+ ELL +KDE RRT V ++ D I ED+VV VS Y+KR+P+S Sbjct: 481 ELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVSR 540 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R Q RGGKG G +++ D V+ +F+ +TH +L F++ G VY+ K +++P S ARG Sbjct: 541 FRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTARG 600 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K+ +N+L + GE IT ++ + E Y+ T++G ++R F I +G IA Sbjct: 601 KSAVNLLDFDDGEEITAVVNCDDLEDIEG--YLTMVTRNGYIKRTGTDRFQNILSTGIIA 658 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 KLD DE++ VE E+D+++ T+ G +RF +R GR++ GVRGI L +GD V Sbjct: 659 TKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAM-GRSARGVRGIKL-EGDDV 716 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 ++ + D H S Sbjct: 717 VAGVAAIDED-----------HHS------------------------------------ 729 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +ILTV+E G+GKRT +R +R+GKG+ D+ G + A+ V + D +++ Sbjct: 730 ---WILTVTENGYGKRTDLDAYRTQSRNGKGL--IDIKANERNGPVCAINTVGEGDHLVV 784 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEAESTE 910 +SD+G ++R PV +I R T GV++ + + V SV+ I E E +D+A+S E Sbjct: 785 MSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVIPAAMTTEGEELDDADSVE 844 >gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53] gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53] Length = 865 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 337/893 (37%), Positives = 530/893 (59%), Gaps = 90/893 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 +E +G+T V+I DE++ S+L YA++V++ RAIPD RDGLKPVHRRIL+ M ++G+ Sbjct: 58 DEPTEGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGT 117 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R L++G GNFGS+DGD PA+ R Sbjct: 118 QYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMR 177 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL+ + K+TVDF NYD + +EP VL +R+PN+LV+G GIAVGMAT+ Sbjct: 178 YTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATS 237 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E +D +A N DI ++ L++ I+GPDFPTG VILG GI AY TGRG I Sbjct: 238 IPPHNLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTKGILEAYKTGRGQIP 297 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R I + ++ +I++T+IPY + K+A++E I++L +E + I+DLRDES+R G R Sbjct: 298 LRSEYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIR 357 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VI++K+G + +V+LN+L++ +SL + FSVNMVAL +P+ TL +L ++ ++EV+ Sbjct: 358 IVIDIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNTQPKLLTLKDVLDVYLEHQKEVL 417 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R + L KA+D H+L GL +A N+D+VV +I+ S + E A ++L+++ Sbjct: 418 TRELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEK--------- 468 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 Y+ LSE Q +AIL +RL RLTGL + NE+ L EI+ Sbjct: 469 ---------YS--------LSEEQAKAILNMRLGRLTGLSYSKMTNEIEELRKEIQRITS 511 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVVTVSHLGYV 548 IL S L+ + +L +K++ R+T I +E+ ++ R+D+V+T + G+V Sbjct: 512 ILDSEQELVNNVIADLEKIKEKYGDSRKTSIDASASSSINEEQLIPRKDIVITATVDGFV 571 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV L Y Q RGG G +G+ D + + +TH + FS+LG VYK + +++ Sbjct: 572 KRVNLEEYNLQNRGGMGSTGMKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQE 631 Query: 609 GSPQARGKALINILSLNQ--GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 +++G + N++ LN+ E+I I+P ES NL+++ TK G V++ L +F Sbjct: 632 ADKKSKGNSFANLVELNKELNEKIIRILPVDSYES---NLHLLTVTKKGIVKKTALDNFK 688 Query: 667 QINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 ++ +G A KL D DE+ V T + +L+ V+F S IR A RNS+GV+ Sbjct: 689 KVRSNGIKAFKLKDEEDELKDVILVTNSDLVLVANNHKNVVKFEASKIRSQA-RNSIGVQ 747 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ L D Y E+ S+ SS EG Sbjct: 748 GMKL---------------DGKY----------------------EVQSI--SSSKEG-- 766 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 +F+LT+ E GFGK T ++ ++NR+ KG + + +K G LV Sbjct: 767 ------------EFVLTIGEFGFGKLTDHKEYSLTNRNAKGKTSINPAK---AGNLVFAK 811 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 VN D++++++ +G IR ++++ + SR +KGV I + ++++SVE I+ Sbjct: 812 FVNPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNEGDKIISVEVIK 864 >gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168] gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168] Length = 796 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 337/884 (38%), Positives = 514/884 (58%), Gaps = 103/884 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S++I D+M++SYL+Y+++VI RA+PD+RDGLKPVHRRIL+ ++G+ +K + K A Sbjct: 5 IRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+A++YDA+ RMAQ ++ R LI+G GNFGS+DGD PAA RYTE RL Sbjct: 65 RIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A ++ D+ +DTVDF N+DGS QEP +L + PN+L+NG GIAVGM+T+IP HNL Sbjct: 125 TELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD V ++ +P+ L+ +M+ I GPDFPTGA I+G +GIK AY TG G I +R + Sbjct: 185 GEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLRARTQ 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK G ++QI++ EIPY +NK +LE IAEL+ + +I +++DLRDESD++G R+V+ELK Sbjct: 245 IEK-KGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVVELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 GA D+ILNQLY++TSLQ+ + +NM+AL+G +P LI ILK F+ FR +V+ RRTKY Sbjct: 304 SGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVITRRTKY 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LNKA++R H+L GL A+ LD V+ IIR S + + AR++L ++ Sbjct: 364 KLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEK--------------- 408 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + ++E Q AIL +RL +L G+ + + E L +IK IL++++ Sbjct: 409 -----------LVITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKN 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+ELL +K++ R+T I+E +E D I +E + +T S+ +KR Sbjct: 458 ELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTS 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S Y R GK D++ D +T ++LFF++ G VY V ++P + Sbjct: 518 SEY---ARAGKN---------DYIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLS 565 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G + + L + ++I ++ E+ Y+ ATK G V++ ++ Q S Sbjct: 566 TGDNIKDFLKIPLSKKIVKVICLNEETKEK---YITIATKQGMVKKTIGGEY-QTTYSRI 621 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 A+KL+ DE++ VE +ILL TK + +RF ++ GRN++G GI LAKGD Sbjct: 622 KAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSVS-DTGRNTIGSIGIKLAKGD 680 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +V+S +V N++SV Sbjct: 681 EVVSFNLV----------------------------------NNNTSV------------ 694 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +++S+ G GKR+ ++ NR+GKG++ S I + V N +D I Sbjct: 695 -------VSISKTGRGKRSPIEEYNPQNRNGKGLKTCGSS----IYKMAGVICANPDDYI 743 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++ + L V VN++ SR + S D+++ VE++ Sbjct: 744 LITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKL 787 >gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M] gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M] Length = 839 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 324/749 (43%), Positives = 464/749 (61%), Gaps = 39/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ + ++N D D L A+ E ++GPDFPT +I+G G Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGTQG 240 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I +AY TGRGSI +RGV IE+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V++RRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 361 QMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 419 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 420 ------------VGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVD 454 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R I++ EL + D+ RRTRI+ ++ DED I R Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGEVSDEDLIAR 514 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATQNG 631 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ E D+LL + GQ +RF + A Sbjct: 632 LVKKSKLTDF-DSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEA 690 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ D+++S+ +V Sbjct: 691 LRPM-GRATSGVQGMRFNADDRLLSLNVV 718 >gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C] gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C] Length = 874 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 325/751 (43%), Positives = 468/751 (62%), Gaps = 47/751 (6%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 S++E+ I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G Sbjct: 12 SAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYR 71 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP A Sbjct: 72 PEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAA 131 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTEC+L A +L D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGM Sbjct: 132 AMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGM 191 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 ATNIP HNL EV G +++P+ DAL+E I+GPDFPTGA+++GR GI+ AY Sbjct: 192 ATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALVVGRKGIEEAYR 251 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGSI +R V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE Sbjct: 252 TGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDE 310 Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ + Sbjct: 311 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHW 370 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 V + EV+VRRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 371 VQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM--- 427 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 G + + E+Q AILE++L RL L R I E + L Sbjct: 428 -----------------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQ 464 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+S + I+ +EL ++ ++ RR+++V DM ED I ED+VVT Sbjct: 465 AKINEYNAILASPEKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIEDLIAEEDIVVT 524 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++H GYVKR YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ Sbjct: 525 ITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRS 584 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + LP ARG+ + N+L+ E+I ++ + E++ Y++ ATK G V++ Sbjct: 585 KAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYEAA---PYLILATKGGLVKKTA 641 Query: 662 LSDFIQINRSGKIAMKL---------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711 L D+ G IA+ L + DE++ E + E+D+LL +K Q +RF + Sbjct: 642 LKDYDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISKKAQSIRFTATD 701 Query: 712 -AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 A+R GR + GV+G+S +GD+++SM++V Sbjct: 702 EALRPM-GRATSGVKGMSFREGDELLSMSVV 731 >gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] Length = 788 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 339/886 (38%), Positives = 520/886 (58%), Gaps = 104/886 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +I +EM++SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+ NK Y K A Sbjct: 3 IQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEVMGKYHPHG+ AIY+ LARMAQD+S+R LL++GQGNFGS+DGD PAA RYTE RL Sbjct: 63 RIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEARL 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ +TVDF PN+DG+ +EPVVL AR PN+L+NG GIAVGMATN+P HNL Sbjct: 123 AKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+VD + +ID+PD D+D L+E ++GPDFPTG I+G G+ +AY TG+G I +R Sbjct: 183 SEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTIIGYEGLVDAYRTGKGKIKVRAKYE 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +++ ++I++ EIPY+VNK+ +L+KIA LVRE ++ I+DL+DESDR+G R+VI++K Sbjct: 243 VKE-----DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKVK 297 Query: 316 RGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 R + ++++NQL +T L+ + + N+V ++G P L ++K ++ R EV+VR+ Sbjct: 298 RDMNPEIVVNQLLEHTDLEVTYGIINLVLVDGV-PRILNLKELMKEYIRHRMEVLVRKLN 356 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA++R H++ GL A+ +DEV+ I+ S + + A I+L+ Sbjct: 357 YQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEA----------------TINLV 400 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 ++ SEVQ +AIL++RL +LT + D + E L +IK +L+S Sbjct: 401 -----------SLGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASE 449 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPL 553 + G+IK+EL +K+ RRT I +G ++ D ED I E+ V+ ++ GY++R+ + Sbjct: 450 EKRYGVIKEELFEIKNLYGDKRRTDIYKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKV 509 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 YRAQ RGGKG + + D D+ + H ++FF+ G VY K + +P G+ ++ Sbjct: 510 DEYRAQGRGGKGVM-INYGEGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRS 568 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNL--YVVFATKHGNVRRNKLSDFIQINRS 671 RG+A+INI+ G + ++ S N+ Y+ F T++G V+R L +F + Sbjct: 569 RGRAIINIIP-KLGSDVIRML-------SLNDFSGYLFFITRNGIVKRTSLEEFSNPRST 620 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G A+ D DE++ V+ DI L TK G+ +RF +RV GR + GV GI L Sbjct: 621 GIRAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQD 679 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD+VIS S+VE Sbjct: 680 GDEVIS-----------------------------------------SAVES-------- 690 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 + ++ V G+GKRT ++R R G G+R + N + +L+ +ND Sbjct: 691 ----EGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNANVVKSLLT----TEND 742 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 + +L++ G IR+ + ++ + R +GV + + VV+V ++ Sbjct: 743 EALLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788 >gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201] gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201] Length = 880 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/899 (39%), Positives = 515/899 (57%), Gaps = 96/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 12 VEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTMYDGGYRPERSFNKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYDAL R+ Q+W++R L GQGNFGS D AA RYTE ++ Sbjct: 72 RVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+ NYDG QEP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 132 APLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NPD+D L+ L++ ++GPDFP+GA ILG GI+ AY TGRGSI R Sbjct: 192 REVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQILGHKGIEQAYRTGRGSITQR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R +VVTE+PYQVN + KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 252 AVVSVEEIH-NRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGIADMRDETSGRTGQRL 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+LN LY++T LQ FS NM+AL P +L + +V+ + +V+V Sbjct: 311 VIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSLDAFVHHWVSHQMDVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A++ AH+L+GL A+ LDEV+ +IR SP E AR LM+ Sbjct: 371 RRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARNGLME----------- 419 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E Q +AIL ++L RL L R I++ L I E +I Sbjct: 420 ---------------LLGIDEAQAQAILNMQLRRLAALERQKIQDRHAELQRLIAEYEEI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 ++S +R GII +EL + + RRT ++ G D+ ED I ++ +VVT++ GYVK Sbjct: 465 IASEARQRGIISEELAEIVERYGDDRRTEVLYGFDGDVSMEDLIPQQQVVVTITRDGYVK 524 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YRAQ RGG+G G +R +D V F+ +TH +LFF++LG VY+ K + Sbjct: 525 RTRADEYRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTTLGRVYRVKAYEFVEA 584 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N++ ERI +M E S + Y+V AT++G V++++L+D+ Sbjct: 585 GRDAKGQHVANLMEFQPEERIAKVM---ELHSYQDAPYLVLATRNGLVKKSRLTDYDTNR 641 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 +G IA+ L DE++S ++DI+L ++ GQ +RF A+R GR + GV G+ Sbjct: 642 SAGVIAINLRDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDALRPM-GRATSGVTGM 700 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 GD+++S +V +DS V Sbjct: 701 KFRSGDELLSANVV----------------------------------SDDSHV------ 720 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846 V+E G+ KRT+ ++R+ R G GI+ V+K+ E+ G LV Sbjct: 721 -------------FVVTEGGYAKRTAVQEYRVQGRGGLGIK---VAKLAEVRGGLVGGLI 764 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905 V +ND++++V + G ++R V+E+ R T GV+ ++ +V V R E EI E Sbjct: 765 VGENDEVLVVMESGKVVRSTVSEVPARGRDTMGVIFAKPGPNDTIVGVARNAEREIEKE 823 >gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] Length = 858 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/894 (40%), Positives = 519/894 (58%), Gaps = 98/894 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M G +K + KC Sbjct: 23 IDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFSKCT 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++++YDAL R+ Q WSLR L GQGNFGS D AA RYTE ++ Sbjct: 83 RVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTETKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTV+F+ NYDG QEP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 APLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G + + NP+ ++AL++ I+GPDFPTGA ILG GI++AY TGRGS+ +R Sbjct: 203 REVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQILGVKGIQDAYRTGRGSVTMR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R +VVTE+PYQVN + KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 263 AVVSVEELQG-RTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+A+ P ++ G + A+ + EV+V Sbjct: 322 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLSIDGFITAWATHQIEVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L G A+ LDEV+ +IR SP E AR L Sbjct: 382 RRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDAR-------------TGL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I L++ + E+Q RAIL+++L RL L R I +E + +EI E I Sbjct: 429 IALLE-------------IDEIQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 ++S R I+ +EL + + RRT I+ G DM ED I E+MVVTV+ GYVK Sbjct: 476 IASEQRQRDIVSEELTELLAKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYVK 535 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V LF+ +TH +LFF++ G VY+ K + L G Sbjct: 536 RTRSDNYRSQHRGGKGVKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEG 595 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N L+L GE I I+ + E++ Y+V AT +G V++ LS++ N Sbjct: 596 GRDAKGQHVANFLALQPGEEIAQILDIRDYETA---TYLVLATHNGLVKKTALSEY-DTN 651 Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726 RSG IA+ L DE++S +D+LL ++ G +RF S A+R GR++ GV G Sbjct: 652 RSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIRFTASDEALRPM-GRSTSGVMG 710 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +S + D+++S ++V D+ Y Sbjct: 711 MSFREDDRLLSASVV--PDSGY-------------------------------------- 730 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVF 845 + V+E GF KRTS+ +R+ R G GI+ V+K++ G L Sbjct: 731 -------------VFVVTEGGFAKRTSADQYRVQGRGGLGIK---VAKLDGARGDLAGAL 774 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 V D+D++++V G ++R V E+ R T GVV A +++++++ R E Sbjct: 775 MVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARFAAEDKIIAIARNSE 828 Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 15/125 (12%) Query: 787 EERCQELKLKE----QFILTVSEKGFGKRT--SSYDFRISNRSGKGIRATDVSKINEIGA 840 EE Q L +++ +++ + G K+T S YD +NRSG GI A ++ + +E Sbjct: 614 EEIAQILDIRDYETATYLVLATHNGLVKKTALSEYD---TNRSG-GIIAVNLREGDE--- 666 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIR 898 LV+ V + D ++LVS KG IR ++ +R R+T GV+ S +D+R++S + Sbjct: 667 LVSAMLVENTDDVLLVSRKGMSIRFTASDEALRPMGRSTSGVMGMSFREDDRLLSASVVP 726 Query: 899 ESEIV 903 +S V Sbjct: 727 DSGYV 731 >gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] Length = 876 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 356/902 (39%), Positives = 512/902 (56%), Gaps = 107/902 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+P + DGLKPVHRR+++GM G +K + KCA Sbjct: 23 IDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVHRRVIYGMYDGGFRPDKSFSKCA 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG+A IYDAL R+ Q WSLR L GQGNFGS AA RYTE ++ Sbjct: 83 RVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALGQGNFGSPGNQGAAAPRYTETKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A ++ D+ ++TVDF NYDG QEPVVL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 SQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + ++NPD L+ALME I GPDFPT A ILG GIK+AY TGRGSI +R Sbjct: 203 REVSAGALWALENPDATREELLEALMERIPGPDFPTAAQILGTRGIKDAYRTGRGSITMR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +IE+ G R +V+TE+PYQVN + KI +L RE +I IAD+RDE S R G R+ Sbjct: 263 AVVNIEEIQG-RTCLVITELPYQVNPDNVAVKIGDLAREGKITGIADIRDETSGRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+A+ P +L G + ++ + V+V Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGVPRTLSLDGFVSHWIDHQVNVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +R H+L G A+ LDEV+ +IR SP + A L + L Sbjct: 382 RRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSPTAQDANEGLQK----------L 431 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D IDD +Q +AIL+++L RL L R I +E L I + DI Sbjct: 432 LD-IDD---------------IQAQAILDMQLRRLAALERQKIVDEATELEARIADFNDI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+S +R II+ EL + D RRT+I+ G D+ ED I E+MV+TV+ GY+K Sbjct: 476 LASPARQRTIIRDELTGIVDRFGDDRRTQILHGFDGDVSIEDLIAEEEMVITVTRDGYIK 535 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R +D V F+ +TH +LFF++ G VY+ K + +P Sbjct: 536 RTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHHWLLFFTNKGRVYRSKAYEVPEA 595 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+L E I I+ + + Y+V AT++G V++ +L ++ Sbjct: 596 GRDAKGQHVANLLALQPDEEIAQILDIRDYSVA---TYLVLATRNGLVKKTRLDEYDTNR 652 Query: 670 RSGKIAMKLDSR-------------DEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714 + G IA+KL + DE++S + +DILL ++LG +RF + A+R Sbjct: 653 QGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILLISRLGMSLRFSATDNALR 712 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR++ GV+G+ +GD ++S ++ Sbjct: 713 PM-GRSTSGVKGMDFREGDSLLSASVA--------------------------------- 738 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 K+D +F+ V+E G+ KRT+ ++R+ NR G GI+ ++ Sbjct: 739 -KDD-------------------EFVFVVTEGGYAKRTAVTEYRMQNRGGLGIKVARLT- 777 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ G L V++ D++++V G ++R V E+ R T GVV D+R++++ Sbjct: 778 -DDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARAGGDDRIIAI 836 Query: 895 ER 896 R Sbjct: 837 AR 838 Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 9/124 (7%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 +G++S ++L +E+ ++TV+ G+ KRT S ++R +R GKG++ +++ + Sbjct: 510 DGDVS---IEDLIAEEEMVITVTRDGYIKRTRSDNYRSQHRGGKGVKG---AQLRADDVV 563 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898 F + ++ ++KG + R E+ A R KG + + DE + + IR Sbjct: 564 EHFFVTTTHHWLLFFTNKGRVYRSKAYEVPEAGRDAKGQHVANLLALQPDEEIAQILDIR 623 Query: 899 ESEI 902 + + Sbjct: 624 DYSV 627 >gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] Length = 814 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/882 (40%), Positives = 510/882 (57%), Gaps = 93/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M +MGV N + K + Sbjct: 15 IEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSNTAHRKSS 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I G+ MG YHPHG +AIYD L RMAQD+S+R LI+GQGNFGS+DGDP AA RYTE R+ Sbjct: 75 SIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSMDGDPAAAMRYTEARM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ KDTVDF NYD QEP VL ++ PN+L+NG GIAVGM+TNIP HNL Sbjct: 135 DPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSSGIAVGMSTNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE+VD V ++ NPD ++ LME I+GPDFPTG I+GR I +AYATGRG + +R Sbjct: 195 GELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIVGRDAIYSAYATGRGRLRVRAEYE 254 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 ++ G +IV++E+PYQ NKA ++E+IA+ V E +I I+DLRDESDR G R+V+ELK Sbjct: 255 VDPEEG---RIVISELPYQENKARVVERIADDVNEGKIEGISDLRDESDRNGVRIVVELK 311 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ DV+ N+L + L+S F V +AL +P+ +L L+ ++ R EVV RR++Y Sbjct: 312 RGANIDVVENRLLDH-HLESTFGVINLALVDGQPKVLSLKESLQHYIDHRREVVRRRSEY 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A DRAH+L G A+ N+++VV +IR + + AR L Q S++ Sbjct: 371 DLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGL-QESFD------------ 417 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 SE Q I+ ++L LT + +I +E + I +L+SR Sbjct: 418 -------------FSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSRE 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 +L +I EL VKD+ D RRT I+E + ED I ED VV ++ Y+KR+P+ Sbjct: 465 KLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVVVITEDDYIKRMPVEN 524 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 + Q RGGKG G ++ D V+ +F ++H +L F++ G VY+ K + +P S ARG Sbjct: 525 FDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARG 584 Query: 616 KALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 K+ IN++ L+ GE +T ++ F +DE + T++G V+R S+F I +G Sbjct: 585 KSAINLIDLDDGEELTAVVSTDEFGDDEC------ITMVTRNGYVKRTCCSEFENILSTG 638 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 IA KL+ DE++ V+ D+++ T+ G +RF S + GR++ GV GI L Sbjct: 639 IIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM-GRSARGVNGIKLQDD 697 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V +M ++ D ++ SL Sbjct: 698 DKVAAM--------------------------VATDDDDPRSL----------------- 714 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 LTV+E GFGKRT ++R +R GKG+ D+ + G + V D D Sbjct: 715 --------LTVTEHGFGKRTKLDEYRTQSRYGKGL--IDIKTDDRNGRVSTAKAVTDEDH 764 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++++S++G ++R+ ++ R TKGV I +D+RV SV Sbjct: 765 LVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASV 806 >gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645] gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645] Length = 922 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 359/900 (39%), Positives = 535/900 (59%), Gaps = 26/900 (2%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +SI DE++ SYLTYA++VI+ RA+PD+RDGLKP RRIL M + + VKCA+IS Sbjct: 1 MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+ G YHPHG + IY L RMAQ+W+ R LL++ QGNFGS+ G PPAA RYTE R+ Sbjct: 61 GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL+DL DTVD+ P YD EP VL ++YPN+LVNG GIAVGMAT+IP HNLGEV Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 V VI+ P + ++ L++II GPDFPTG +I GR+G++ Y TGR +I++R + I+ Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIICGRSGVRRGYLTGRSTILVRSHTTIDN 240 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRG 317 G R +IV+ +IPYQ + + E+IA E RIV I+ +R+ESD ++ R+V+ELKR Sbjct: 241 VKG-RNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKRD 299 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A D++LNQL+++T +Q FS+ M+AL KP T+ ++ F+ R V+ RRT++LL Sbjct: 300 ADPDIVLNQLFQFTPIQDTFSIIMLALVDGKPRTLTIRDLIDEFIRHRVIVIRRRTQFLL 359 Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437 ++AR R H + GL +A+A++DE++RIIR S A+ LM AS L + + Sbjct: 360 SRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPAS---MLARALGEE 416 Query: 438 SYTI-----GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + + G L+ VQ AIL + L +L L ++ + E L EI+E L ILS Sbjct: 417 GFELFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILS 476 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551 + II+ ++L ++ + RRT I +E L ++ ED I E MVV++SH GY+KR Sbjct: 477 DERNIREIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKRT 536 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611 P + Y+AQRRGGKG G D D + LF+ STH +LFF++ G VY +KV+ LP S Sbjct: 537 PATTYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSR 596 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ++RG+A++N+L L +GERI + + Y+V AT+ G V++ KL + + + Sbjct: 597 ESRGRAIVNLLQLEEGERIADCRAV--RDFDVEDHYLVMATRKGLVKKTKLEAYSRPMKK 654 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 G IA+KL DE++ V ++++L+T G +RF S R GRNS GV+GI L Sbjct: 655 GIIAIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPM-GRNSSGVKGIKLDA 713 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+++ M + AD D ++ + +R G + S N + + Sbjct: 714 DDELVGMVV-----ADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAE 768 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 E E + + + +S +R R GKG+R D+ G +V++ V+D D Sbjct: 769 E----EPVVEDEASGDDDELSSGAKYRTQRRGGKGLR--DIKTTARNGRVVSIVRVDDED 822 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAESTE 910 ++++++ +G + RV EI I R T+GV I S KD+ + +V R+ ++ + DE ES+E Sbjct: 823 EVLMMTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSE 882 >gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46] gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46] gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46] Length = 783 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 325/749 (43%), Positives = 465/749 (62%), Gaps = 40/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D+ ++ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDDSLDR-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG G Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATNIP HNL E+ D ++N D D L A+M ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 +AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F NM+A+ P L Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT Y L K +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + E+Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIID 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D RRTRI+ D+ DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ + Y+V AT++G Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI---RGYTDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KL+DF NRSG I A+ L DE++ C+ ++D+LL + GQ +RF + A Sbjct: 631 LVKKSKLTDF-DSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ D+++S+ +V Sbjct: 690 LRPM-GRATSGVQGMRFNIDDRLLSLNVV 717 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 72/147 (48%), Gaps = 15/147 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++ + EI D + +G++S+E +L +E ++T++E G+ KRT + Sbjct: 475 QRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDE---DLIAREDVVVTITETGYAKRTKT 531 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + + F + +D I+ + +G + R ++ AS Sbjct: 532 DLYRSQKRGGKGVQGAGLKQDDIVAHF---FVCSTHDLILFFTTQGRVYRAKAYDLPEAS 588 Query: 875 RATKG---VVIFSTAKDERVVSVERIR 898 R +G + + +ER+ V +IR Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIQIR 615 Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 36/257 (14%) Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712 +HG+ RR ++ IA D DE L +E+ ++ T+ G R Sbjct: 489 RHGDDRRTRI-----------IAADGDVSDEDL----IAREDVVVTITETGYAKRTKTDL 533 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 R R GV+G L + D V + D I + R + D E Sbjct: 534 YRS-QKRGGKGVQGAGLKQDDIVAHFFVCSTHDL-----ILFFTTQGRVYRAKAYDLPEA 587 Query: 773 TSLKNDSSVEGNIS---EER-CQELKLK----EQFILTVSEKGFGKRTSSYDFRISNRSG 824 + V ++ EER Q ++++ +++ + G K++ DF SNRSG Sbjct: 588 SRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD-SNRSG 646 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVI 882 GI A ++ +E LV + +D ++LVS G IR + +R RAT GV Sbjct: 647 -GIVAVNLRDNDE---LVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQG 702 Query: 883 FSTAKDERVVSVERIRE 899 D+R++S+ +RE Sbjct: 703 MRFNIDDRLLSLNVVRE 719 >gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306] Length = 856 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/897 (39%), Positives = 522/897 (58%), Gaps = 91/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG +HPHG++AIYDAL R+AQ W++R +++GQGNFGS D PAA RYTECR+ Sbjct: 72 RPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSPGNDGPAAMRYTECRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG QEP +L +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ D ++ + + L+A M+ ++GPDFPT +I+G +GIK+AY TGRGSI +R Sbjct: 192 KELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIVGDSGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ G R+ IV+TE+PYQVN ++ IAE V +I I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-QGSRQTIVITELPYQVNPDNLVTNIAESVANGKIAGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+++ LQ+ F NM+++ P + +L+ +VA + EV+V Sbjct: 311 VITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRIDQMLRYYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAHVL GL A+ LDEV+ +IR SP + AR LM L Sbjct: 371 RRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEAREGLMS----------L 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + +Q AIL ++L RL L R I +EL + +EI + DI Sbjct: 421 LD----------------VDTIQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + D+ RRT+IV D+ DED I RE++VVT++ GY KR Sbjct: 465 LAKPERQRAIVHDELQEIVDKYGDERRTQIVAATGDVTDEDLIARENVVVTITSTGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y+AQ+RGGKG G ++ +D V + FI STH +LFF++ G VY+ K + LP S Sbjct: 525 TKVDSYKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNFGRVYRLKAYELPEAS 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V ATK G V++++L+D+ Sbjct: 585 RTARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATKQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ E + +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ++S+++V Y+ + SG + T++ EE Sbjct: 702 RDDDQLLSLSVVQEG--------GYLLVAT------SGGYGKRTAI-----------EEY 736 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + G G T F+ + + GK I A V + +EI A+ +V Sbjct: 737 APQ-----------GRGGLGVMT----FKYTPKRGKLIGAITVMEDDEIFAITSV----- 776 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 G +IR VNEIR +SRAT GV + + + D ++ ++R E + +EA Sbjct: 777 ----------GGVIRTEVNEIRPSSRATMGVRLVNLSDDVELLVIDRNVEDDGEEEA 823 >gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797] gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797] Length = 919 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 363/924 (39%), Positives = 541/924 (58%), Gaps = 51/924 (5%) Query: 6 ISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61 ++SD EE K I + I DEM++SYLTYA++VI+ RA+PD RDGLKP RRIL M Sbjct: 1 MASDNGEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVAMN 60 Query: 62 QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121 + + + VKCA+ISG+ G YHPHG+ +IY L R+ QDW +R +LI+ QGNFGS+ Sbjct: 61 DLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGSLA 120 Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181 G PPAA RYTE RL A +LDD+ ++TVDF P YD EPVVL +++PN+LVNG G Sbjct: 121 GLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGSSG 180 Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241 IAVGMAT+IP NLGEV + +IDNPD +D +++++ GPDFPTG +I GR GI+ Y Sbjct: 181 IAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIICGRYGIRKGY 240 Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 ATGR +I +R +H E T + IVVTEIPY + + EK+ LVR+ R+ I+ + D Sbjct: 241 ATGRSTITLRARTHFE-TEKQSDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISRIVD 299 Query: 302 ESDRQ--GYRVVIE--LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +DR ++V ++ LKR A +V+L QL++++ LQ+ FS+ ++AL G +PE ++ + Sbjct: 300 LTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALVGNRPETLSIKEL 359 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 ++ F+ R +V+ RRT++LL +AR R H + GL IA ++DEV++ IR SP+ A+ L Sbjct: 360 IQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEAKISL 419 Query: 418 MQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 + I+ + D + G LS Q AI+ ++L L L R+ + Sbjct: 420 QGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLEREKLSG 479 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534 E L I E L +LS + +I++++L ++ + RRT I E L D+ +D I Sbjct: 480 EHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSDKRRTDISEDELTDVNRDDLIT 539 Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 E MVVT+S GY+KR L+ Y+AQ RGGKG G +ED + LF+ STH+ +LF ++ Sbjct: 540 EEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSSTHSYLLFITN 599 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATK 653 G VY +KV+ LP+ A+G+AL+N+LSL + E ++ + E DE ++V AT+ Sbjct: 600 RGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFDEER----FLVMATR 655 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +G ++++ LS + + + G IA+KLD DE++ + D+LL T G +RF S Sbjct: 656 NGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRFAQSDA 715 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAI-------VLHADADYDER--ICYMKHMSAQRRL 764 R GRN+ GV+GI L+K VI M I + + Y +R ++ Q Sbjct: 716 RSM-GRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKRTPFGFIPPAEEQEEE 774 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 + EEIT+ + DS E N EE QE + S +R R G Sbjct: 775 VLEAEEEITA-EPDSDSEENTDEE--QETR------------------SGMHYRRQRRGG 813 Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 KGIR S N G V + PV ++D++++V+ G + RV EI R T+GV + + Sbjct: 814 KGIRDIRTSARN--GNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVIT 871 Query: 885 TAKDERVVSVERIRESEIVDEAES 908 ++++VS+ RI +EIVDE+E+ Sbjct: 872 LDTNDKLVSLARI-PAEIVDESEN 894 >gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395] gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395] Length = 832 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 344/833 (41%), Positives = 497/833 (59%), Gaps = 56/833 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQNSY+ YA++VI+GRA+P++RDGLKPVHRR+L+ G + YVK A Sbjct: 16 IEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYASFDAGFRPERGYVKSA 75 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R E MG YHPHG+++IYDAL R+AQ WS+R LI+GQGNFGS D AA RYTE RL Sbjct: 76 RPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDGAAAMRYTEARL 135 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF PNYDG QEP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 136 TPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSGGIAVGMATNIPPHNL 195 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV D ++NP+ D L A ME+++GPDFPT A+I+G GI++AY TGRGSI +R Sbjct: 196 NEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGSQGIRDAYMTGRGSIRMR 255 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V IE+ G Q++VTE+PYQVN ++ IAE V + ++ I+ + D+ SDR G R+ Sbjct: 256 SVVDIEEVKG-TTQLIVTELPYQVNPDNLISSIAEQVNDGKLKGISKIEDQSSDRAGLRI 314 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI L+R A V+LN LY+++ LQ+ F NM+++ P L +++ +VA + +V++ Sbjct: 315 VITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMIRYYVAHQIDVII 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S N E AR LM DL Sbjct: 375 RRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAARTGLM----------DL 424 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q AIL ++L RL+ L R I +EL + EI + DI Sbjct: 425 LD----------------IDEIQADAILAMQLRRLSALERQKIIDELAEIEREIADLKDI 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R I++ EL V D+ RRTRI+ D+ DED I RED+VVT++ GY KR Sbjct: 469 LERPERQRAIVRDELKEVVDKYGDDRRTRIIPAEGDVTDEDLIAREDVVVTITETGYAKR 528 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 529 TKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTKGRVYRAKAYELPEAN 588 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ ERI ++ E + Y+V AT++G V+++KL F NR Sbjct: 589 RTARGQHVANLLAFQPEERIAQVIRISGYEDAP---YLVLATRNGLVKKSKLDAF-DSNR 644 Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 SG I A+ L DE++ C+ ++D+LL +K GQ +RF +R GR + GV+G+ Sbjct: 645 SGGIAAINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETLRPM-GRQTSGVQGM 703 Query: 728 SLAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 D+++S+ +V + Y +R ++ SAQ R G + ++++D Sbjct: 704 RFNDDDELLSLTVVRPDTFLLVATSGGYAKR-TDIEEYSAQGRGGKG----VLTIQHDPK 758 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 G++ ++ + I ++ G RT + R + R KG+R ++S Sbjct: 759 -RGDLVGALVVDI---DSEIYAITSGGGVIRTKAKQVRKAGRQTKGVRLMNLS 807 >gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] Length = 865 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 326/738 (44%), Positives = 461/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ LDALME I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS F NM+AL P +L ++ +VA + EV+V Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL A+ +DEV+ +IR S + AR LM+ Sbjct: 379 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLME----------- 427 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 428 ---------------LLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ EL ++ ++ R+T +V DM ED I ED+VVTVS GYVKR Sbjct: 473 LASPVRQRGIVSAELAAIVEKYGDDRKTMLVPYDGDMSIEDLIAEEDIVVTVSRGGYVKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + +++ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYDAA---PYLVLATKAGLVKKTSLKDYDSPRS 649 Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L R DE++ E + ++D+LL +K Q +RF S +R GR + G Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSIRFTASDDTLRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 709 VKGMSFREGDELLSMNVV 726 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++S + I D +G++S ++L +E ++TVS G+ KRT + Sbjct: 479 QRGIVSAELAAIVEKYGDDRKTMLVPYDGDMS---IEDLIAEEDIVVTVSRGGYVKRTKA 535 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 D+R R GKG+R T K+ E + F + ++ ++KG + R E+ A Sbjct: 536 VDYRAQKRGGKGVRGT---KLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899 R +G + + DE + + IR+ Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRD 620 >gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma] Length = 846 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 328/887 (36%), Positives = 522/887 (58%), Gaps = 88/887 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V I +E++ S+L+YA++VI+ RA+PD+RDG+KPV RRIL+ M +G+ +++ K A + Sbjct: 31 VDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMNDLGLSNQERFKKAAAVV 90 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G VMG+ HPHG+ +IY+A+ RMAQD++ R LI G GNFGS+DGD AA RYTE R+ K Sbjct: 91 GAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDGDSAAAMRYTEARMSKI 150 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A L+ ++ ++TVDF YDG+ +EP VL A +PN+LVNG GIAVGMATNIP HN EV Sbjct: 151 AIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGIAVGMATNIPPHNFKEV 210 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 ++ +A I+N +I+ LM+ ++GPDFPTG ILG +KN Y TG+G I IR + I + Sbjct: 211 INALIAFINNKNIETQDLMKYLKGPDFPTGGEILGAENLKNIYNTGKGRIFIRSKTQIIQ 270 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 ++ IV+TEIP+Q+ K++++E IA L +EK I I DLRDES+RQG ++VI+LKR Sbjct: 271 NDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDESNRQGIKLVIDLKRDV 330 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + V+LN LY+ + +Q F+ NM+AL P+ L +LK F FR V+ R+ ++ L+ Sbjct: 331 NPHVVLNNLYKNSQVQVSFNFNMIALVKGVPKLVNLKQMLKEFFDFRINVIQRQKQFELS 390 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA + H++ L IA+ ++D VVR+I+ S N + A+ +LM++ Sbjct: 391 KALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEKYQ---------------- 434 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 L E+Q++ ILE+ L ++T L + I+ E L ++I EC +I++S Sbjct: 435 ----------LDELQSKVILEMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKE 484 Query: 499 GIIKQELLSVKDELDTPRRTRI-VEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 I+KQ+LL+++ RRT I +E LD++ I +E +++T++H GY+KR+ L Y Sbjct: 485 QILKQDLLNLQKNFQDGRRTVINMENQDLDIDKSSLIEKEKILITITHKGYIKRLNLDTY 544 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + Q +GGKG G+ M +DFV I STH LFF++ G VY+ K + + S A+G Sbjct: 545 KKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKGI 604 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 L+N++ + +GE +TT+ E + N Y+V TK G ++RN++ ++ I +GKIA Sbjct: 605 PLVNLIPMAKGEFLTTLTSVT--EFNKNKDYLVLVTKKGFIKRNRIQEYANIRSNGKIAF 662 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 L DE+L+V + + DI+L + G+ +R ++IR R S GV G+ + K +Q++ Sbjct: 663 ALKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRT-TNRKSSGVIGMRMDKDEQIV 721 Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796 A+V H + D Sbjct: 722 GAAVVCHPEQD------------------------------------------------- 732 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAVFPVNDNDQIIL 855 IL V+E G+GK+T + ++ R GKG++ ++ K + AL +FP N+++IL Sbjct: 733 ---ILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKITDKKGHLVALKTIFP---NEELIL 786 Query: 856 VSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESE 901 +S G +IR+ N++ S+ T+G +F D++++++ +++ E Sbjct: 787 ISQCGQVIRIEANKVSTTKSKNTEGNRLFKLKDDDKLLNLVVVQKQE 833 >gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] Length = 983 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 311/710 (43%), Positives = 458/710 (64%), Gaps = 23/710 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +V + DE++ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+ M + + N + K A Sbjct: 54 VATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYDLKIWHNGQTKKSA 113 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+G++HPHG+AA+Y+ + RMAQ +S+R LI GQGNFG++DGD PAA RYTE R+ Sbjct: 114 RVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDGDGPAAMRYTEVRM 173 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ K+TVD PNYDG+ Q P VL R+PN+LVNG GIAVGMATNIP HNL Sbjct: 174 TKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGIAVGMATNIPPHNL 233 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+DG VA++DNPD+ LD LM I GPDFPTG I+G GI+ AY TGRG ++R +H Sbjct: 234 GEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIVGNAGIREAYRTGRGRCIMRARTH 293 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY-RVVIEL 314 IE+ R+ I V EIPY VNK+A++++IAELVR+K+I I+++ D SD+ R+ I+L Sbjct: 294 IEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVNDLSDKDNQVRIAIDL 353 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A + +LN L+ TSLQS F +NM+AL P + L IL F+ FR EVV RRT Sbjct: 354 KRDAYEEAVLNNLFERTSLQSSFPINMIALVHNHPRQLPLKEILSEFINFRREVVTRRTV 413 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL + R +A + GL +A AN++++V +I S N + ARR LM+ W+ + I LI+ Sbjct: 414 YLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLMEEPWDGTLISSLIERT 473 Query: 435 DDSSYTIG-----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483 ++ + I D YLSE Q RAIL L+L RLT L D+I+ + +L Sbjct: 474 EE-GFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHLAGDEIQADYKALIEN 532 Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543 IK L+IL++ R+ +I+ EL+ VK+ RR+ E + D I +D++VT+S Sbjct: 533 IKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKLSKADFIAPQDVIVTLS 592 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+K +S Y AQ+RGGKGR ++D+DF++ + + +TH +++ F+ G V+ KV Sbjct: 593 QEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHDTLMCFTDKGRVFASKV 652 Query: 604 WRLPIGSPQA-RGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNK 661 + LP + RG+ + NI + +GE+IT ++P E DE N +++ AT G +++ K Sbjct: 653 FDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDE----NHFIIMATVMGYIKKVK 708 Query: 662 LSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 LS F ++N A+ L D ++ E + ++D+ + + GQC+R Sbjct: 709 LSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQCIR 758 Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 99/246 (40%), Gaps = 49/246 (19%) Query: 538 MVVTVSHLGYVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ++ + +GY+K+V LS +++ QR + + +R+ D + I S V FSS Sbjct: 694 FIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSD 753 Query: 596 G-------FVYKE-----------------------------KVWRLPIGS---PQARGK 616 G F K+ KV G P RG Sbjct: 754 GQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRPSGRGS 813 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG--- 672 + I+ L G+ +++ DE+ + V T +G +R L+D +++NR Sbjct: 814 GALRIIKLRPGQTAVSLILLSVDET---DPEAVMVTANGYGKRILLTDIPLRMNRGSSGV 870 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 K +D +++ V +D L+ T LG R P+S + GR + GV + +G Sbjct: 871 KTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVSNL-PLPGRTAGGVIVMRPYEG 929 Query: 733 DQVISM 738 + +I++ Sbjct: 930 ESIIAL 935 >gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] Length = 813 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 347/878 (39%), Positives = 506/878 (57%), Gaps = 91/878 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 T+E++ SYL Y+++VI+ RAIPD+RDGLKPV RRIL+ M ++G++ N + K ARI GE Sbjct: 10 FTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFKKNARIVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+AAIYDAL RM Q +++R L+E QGNFGS+DGDPPAA RYTE R+ + Sbjct: 70 VMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTEARMPELGE 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++L D+ K+TVDFR N+DGS EPVVL PN+L+NG GIAVGM TNIP HNL E+V Sbjct: 130 YMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPPHNLNELVA 189 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +I+ P+ ++ L++ I+GPDFPTG ++ G+K Y TGRG I IRG IE Sbjct: 190 ALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDGEGLKELYETGRGKITIRGKYRIE-DE 248 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGYRVVIELKR 316 G IV EIPY V+KA ++E+I V +K+ V I D+RDESD++G R+VIEL++ Sbjct: 249 GKGTSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGIRLVIELRK 308 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A+ ++N L+++T+LQS F V M ++ KP L G+L++F+ R V+ RRTKY Sbjct: 309 NANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPSLMNLKGLLQSFLDHRVNVITRRTKYE 368 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR RAH++ GL AV +D VV IIR S NP+ A + L + Sbjct: 369 LEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQE----------------- 411 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 TIG +SE Q +AI ++RL L+ L ++ EL +L +I+ +DIL + R Sbjct: 412 ---TIG------VSEEQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAMDILQKKER 462 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-DCIVREDMVVTVSHLGYVKRVPLSV 555 LLG+IK+EL V ++ RRT I+ D+ +E + I ED+V+ ++ GY+K +P S Sbjct: 463 LLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVIVLTKWGYLKAIPSSE 522 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y+ Q RGGKG G+ + DED V ++ + + ++ FSS G Y+ + + +G Sbjct: 523 YKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIETTLKNTKG 582 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 K + N +SL++GE I +I+ D ++ ++F TK G V+R L +F SG A Sbjct: 583 KHIANFISLDEGEEIKSIVAISLD-GDYDKDILIF-TKQGKVKRTSLREFSSARASGIRA 640 Query: 676 MKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + L +D ++ V + D+L+ TKLG + F S +R GR ++GV I L +G Sbjct: 641 INLVDKDVVVDVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTM-GRTAMGVNSIKLREG-- 697 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 DE I +K ++ Sbjct: 698 --------------DEVINVVKVDEGKK-------------------------------- 711 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L ++E+G+GKR S + ++ NR G G++ V I+ IG +VA V D I+ Sbjct: 712 -----LLLITERGYGKRVSFHSYKPQNRGGIGVKT--VRDISRIGPIVATMSVEDGRDIL 764 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + + KG IRV VN I + R T+GV+I +D+ VV Sbjct: 765 IFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVV 802 >gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5] gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5] Length = 839 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 322/733 (43%), Positives = 462/733 (63%), Gaps = 37/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M G ++ YVKC+ Sbjct: 27 IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL RMAQ WSLR L++G GNFGS DP AA RYTEC+L Sbjct: 87 RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +DTVD + NYDG +EP +L +R PN+L+NG GIAVGMAT IP HNL Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++P+ D L+AL+EI++GPDFPT +I+G+ GI++AY TGRGSI +R Sbjct: 207 REIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQAGIQDAYRTGRGSIRMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VV+E+PYQVN + E+IAEL++E ++ IAD+RDES R G R+ Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRI 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++ +V + EV+ Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA +RAH+L GL+ A+ LDEV+ +IR SP E AR + L Sbjct: 387 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDAR-------------QGL 433 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I L+D + EVQ AIL+++L RL L R I ++L L +EI + DI Sbjct: 434 IRLLD-------------IDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + + RRT+IV ++ ED I RED+VVT++ GY KR Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSMEDLIAREDVVVTITRTGYAKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +YR+QRRGGKG SG +R +D V+ F+ STH +LFF++ G VY+ K + LP S Sbjct: 541 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E+I I+ P + + Y+V ATK+G V++ +L +F Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 657 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ E+D+LL +K Q +RF + A+R GR + GV G+ Sbjct: 658 GGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 716 Query: 729 LAKGDQVISMAIV 741 + D+++++ +V Sbjct: 717 FSGEDELLAVEVV 729 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QRR++S + EI + D +G +S E +L +E ++T++ G+ KRT Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D I+ ++KG + R E+ AS Sbjct: 544 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 875 RATKG---VVIFSTAKDERVVSV 894 R KG + + DE++ + Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQI 623 Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 20/208 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L + + R GG + +RDED + +V+ +L S + Sbjct: 635 LVLATKNGLVKKTRLEEFDSNRSGGI--IAINLRDEDELVGAVLVAPEDDLLLVSKNAQA 692 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + F ++ R P R + + + + + + + E L V+ AT Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSGEDELLAV------EVVREGLDVLVATNG 741 Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK A + R ++ E+++ T G +R P+ Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPEDELFAITSNGGVIRTPVK 801 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L G ++++A Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829 Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%) Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +++ ++ G K+T +F SNRSG GI A ++ +E+ V V P D ++LVS Sbjct: 634 YLVLATKNGLVKKTRLEEFD-SNRSG-GIIAINLRDEDELVGAVLVAP---EDDLLLVSK 688 Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899 IR + +R RAT GV+ + ++ +++VE +RE Sbjct: 689 NAQAIRFNATDEALRPMGRATSGVIGMRFSGEDELLAVEVVRE 731 >gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827] gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827] Length = 840 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 344/838 (41%), Positives = 501/838 (59%), Gaps = 56/838 (6%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EMQNSY+ YA++VI+GRA+PD+RDGLKPVH R+L+ M + Y KCAR+ G+ Sbjct: 21 LQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSMFDSRFLPERSYNKCARVVGD 80 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMG YHPHG++AIYDAL R+AQ W++R LI+GQGNFGS DP AA RYTECRL A Sbjct: 81 VMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQGNDPAAAMRYTECRLTPLAM 140 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ +DTVDFR NYDG QEP VL +R PN+L+NG GIAVGMATNIP HNL EV + Sbjct: 141 RMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSSGIAVGMATNIPPHNLREVAE 200 Query: 201 GCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256 G V +DNP+ L+A++ I+GPDFPT ILG GI++AY TGRGS+ +R V + Sbjct: 201 GVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGTQGIEDAYRTGRGSVKMRAVVEM 260 Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELK 315 ++ + R +VV+E+PYQVN ++E IA LVR+++I I+++ DES+R+ G R+V+ +K Sbjct: 261 DEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGISNIADESNRRSGMRIVVTVK 320 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A V+LN LY++T LQ F VNM++L P L +++ +V + EV+VRRTK+ Sbjct: 321 RDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDGVPRTLRLDQMIRHYVKHQIEVIVRRTKF 380 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAHV GL A+ LD V+ +IR S E+AR LM+ Sbjct: 381 RLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARSGLME---------------- 424 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + + EVQ+ AILE++L RL L R I ++L + ++I + DIL+ Sbjct: 425 ----------LLSVDEVQSNAILEMQLRRLAALERQKIIDQLAEIELQIADLKDILAKPE 474 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 R I++ ELL + D+ RRT+IV D+ ED I ED+VVT++ GY KR + Sbjct: 475 RQRAIVRGELLEIVDKHGDDRRTKIVPFDGDVSMEDLIAVEDVVVTITRTGYAKRTKTDL 534 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 YRAQ+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP S ARG Sbjct: 535 YRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYDLPEASRNARG 594 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + + N+L+ E I ++ E++ Y+V AT++G V+++KLSDF G I Sbjct: 595 QHVANLLAFQPDEEIAQVIQIKNYEAAP---YLVLATRNGLVKKSKLSDFDSNRSGGLIG 651 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGD 733 + L DE++ + +D+LL +K GQ +RF S +R GR + GV+G+ D Sbjct: 652 INLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVLRPM-GRATSGVQGMRFNSDD 710 Query: 734 QVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 +++SM +V + D Y +R ++ Q R G + ++++D G + Sbjct: 711 ELLSMGVVQEGLFVLVATDGGYAKRTP-IEDYPVQGRGGKG----VLTIQHDRR-RGRLV 764 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 ++ E + ++ G RTS+ + R + R KG+R + + E L+AV Sbjct: 765 GALIVDV---EDELYAITSAGGVIRTSAKEIRKAGRQTKGVR---LMNLGEKSTLIAV 816 >gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24] gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24] Length = 902 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/892 (39%), Positives = 508/892 (56%), Gaps = 94/892 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 29 VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R L GQGNFGS D AA RYTE ++ Sbjct: 89 RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF+ NYDG QEP +L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NP + L+E I+GPDFPTGA ILG GI++AY TGRGSI +R Sbjct: 209 REVADGVQWYLANPTASREELLEELLLRIKGPDFPTGATILGHKGIEDAYRTGRGSITMR 268 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIAELV++ +I IADLRDE S R G R+ Sbjct: 269 AVVNVEELEG-RTCLVVTELPYQANPDNLAIKIAELVKDGKISGIADLRDETSGRTGQRL 327 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F+ NM+A+ P +L ++ +VA + +V+ Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTQLQDNFAANMLAIVDGVPRTLSLDAFIRHWVAHQMDVIA 387 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA + AH+L L A+ LDEV+ +IR S E AR LMQ Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLMQ----------- 436 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + E+Q RAIL+++L RL L R I++ L I E I Sbjct: 437 --LLD-------------IDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNSI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+S R II EL + + RRT+I+ G DM ED I E+MVVT++ GYVK Sbjct: 482 LASEERQREIISTELSEIVAKHGDDRRTKILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + L Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELVEA 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ E I ++ + + + Y+V ATK G V++ +L D+ Sbjct: 602 GRDAKGQHVANLLAFQPDEHIAQVLDLRDYQHAP---YLVLATKRGLVKKTRLEDYDTNR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D++L +++GQ +RF + A+R GR + GV G+ Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTATDDALRPM-GRATSGVTGM 717 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D+ L++ D +K+ S Sbjct: 718 KFREDDE-----------------------------LLAADV-----VKDGS-------- 735 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 F+ V+E G+ KRT+ ++R+ R G GI+ + E G LV V Sbjct: 736 -----------FVFIVTEGGYAKRTAVEEYRLQGRGGLGIKVGKYQE--ERGHLVGALIV 782 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + D++++V + G ++R V + R T GV+ K++R++ V R E Sbjct: 783 QEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVIFAKPDKNDRIIEVARNSE 834 >gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216] gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216] Length = 910 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 356/897 (39%), Positives = 511/897 (56%), Gaps = 101/897 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G ++ Y KCA Sbjct: 15 VEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYSKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+ +IYDAL R+AQDWSLR L++GQGNFGS DP AA RYTECR+ Sbjct: 75 RVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPGNDPAAAPRYTECRM 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 135 APLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G ++DNPD L AL+ I+GPDFPTGA+ILG GI +AY TGRGSI +R Sbjct: 195 REVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHRGISDAYRTGRGSITMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R +VV+E+PYQVN + E IA LVR+ R+ IAD++D S + G R+ Sbjct: 255 AVVEVEEIQG-RTCLVVSELPYQVNPDNLAENIANLVRDGRLTGIADVQDHTSGKTGQRL 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI L+R A A V+LN LY++T LQ+ F NM+AL P + LK ++A + +V+V Sbjct: 314 VIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIHAFLKHWIAHQLDVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L L A+ LDEV+ +IR SP E+AR LM Sbjct: 374 RRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARDGLM------------ 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q+RAILE++L RL L R I +E + L I + DI Sbjct: 422 --------------GLLEIDEIQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL + + R+T+I+ DM ED I ED+VVTV+ GY KR Sbjct: 468 LARPERQRQIVGDELAELVERYGDERKTQILPFEGDMTVEDLIPVEDVVVTVTRGGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YRAQRRGG+G G +R++D V F +TH +LFF++LG VY+ K + LP G Sbjct: 528 TKTDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGG 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 RG+ + N+L+ GERI ++ + E + Y+V AT+ G V++ +LS++ Sbjct: 588 RDGRGQHVANLLAFQPGERIVAVLDIEDYEQAP---YLVLATRGGIVKKTRLSEYDSNRS 644 Query: 671 SGKIAMKLDSR----------DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GR 719 G IA+ L S DE+ + +++ D+ L ++ G VRF + + GR Sbjct: 645 GGLIAINLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMSVRFEATDENLRPMGR 704 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV G+ D++++MA+ ++D Sbjct: 705 ATSGVTGMKFRGEDELLAMAVA----------------------------------RDDL 730 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 V F++T E G+ KRT +R R G GI+ +++ E G Sbjct: 731 FV-----------------FVVT--ELGYAKRTKIEHYRKQGRGGLGIKVAKLTE--ERG 769 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 LV V+++D++++V G ++R V+E+ R T GV +R++++ R Sbjct: 770 DLVGALTVSEDDEVLVVMQAGRVVRSRVDEVPDKGRDTMGVTFARPETGDRILAITR 826 >gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379] gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] Length = 880 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 28 VEPVQLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 87 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 88 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 147 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 148 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 207 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ DAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 208 REVAAGAQWYLEHPEASHEELQDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 267 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 268 AVVAVEEIQG-RQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+V Sbjct: 327 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 387 RRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 434 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L I E + L +I E +I Sbjct: 435 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S ++ GI+ +EL ++ ++ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 481 LASPAKQRGIVSEELAAIVEKFGDDRRSKLVPFEGDMSIEDLIAEEDIVVTISRSGYVKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 541 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E+ Y++ ATK G V++ L D+ Sbjct: 601 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 657 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L DE++ E + E+D+LL +K Q +RF + A+R GR + G Sbjct: 658 GGVIAINLREMPDGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 716 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 717 VKGMSFREGDELLSMNVV 734 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 9/125 (7%) Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 EG++S ++L +E ++T+S G+ KRT + D+R R GKG+R T K+ E + Sbjct: 514 EGDMS---IEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGT---KLREDDIV 567 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898 F + ++ ++KG + R E+ A R +G + + DE++ + IR Sbjct: 568 DHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIR 627 Query: 899 ESEIV 903 + E V Sbjct: 628 DYEAV 632 >gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183] gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183] Length = 839 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 349/899 (38%), Positives = 501/899 (55%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I E+Q SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M G ++ Y KCA Sbjct: 15 IEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG++AIYD L R+AQ W++R L++G GNFGS DP AA RYTECRL Sbjct: 75 RVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTECRL 134 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ K+TVDF PNYDG EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 135 APLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPHNL 194 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV +G +DN + LDAL+E I+GPDFPT A+I+GR GI++AY TGRGSI +R Sbjct: 195 REVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIVGRKGIEDAYRTGRGSITMR 254 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V IE+ G R +VVTE+PYQVN + KIAELV+E ++ IAD+RDE S R G R+ Sbjct: 255 AVVEIEEIQG-RTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTGQRL 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LK+ A A V+LN LY++T LQ F NM+AL P L ++ +V + +V+V Sbjct: 314 VIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQFIRYWVDHQIDVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++LL KA +RAH+L L A+ ++EV+ +IR S + + A+ LM Sbjct: 374 RRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLM------------ 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + EVQ +AIL+++L +L L R I +E L EI + +I Sbjct: 422 --------------ALLQIDEVQAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+++EL + + RRT+IV D+ ED I ED+VVT++ GY KR Sbjct: 468 LASPERQRRIVREELEPIVERYGDERRTQIVPFDGDVSYEDLIPEEDIVVTITRGGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP G Sbjct: 528 TRVDAYREQKRGGKGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGG 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 +RG+ + N+L+ E I ++ + + + Y+V AT+ G V++ L DF Sbjct: 588 RDSRGQHVANMLAFQPEEHIAEVLDLRDYDVA---PYLVLATRQGKVKKTALKDFDSPRT 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 G IA+ L DE+++ +D+LL Q +RF ++ GR + GV G+ Sbjct: 645 GGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRF 704 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 G ++ M ++ D D Sbjct: 705 DTG-HLLDMHVIRDGDED------------------------------------------ 721 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 +L +E G+ KRT + + R GKG+ + + G LV V Sbjct: 722 ----------VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKI--VQARGKLVGALMVRP 769 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 D + ++ G +IR EI+ + R T GV + + A+ + VV++ R ES + +E E+ Sbjct: 770 EDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVAIARNVESSMEEEPEA 828 >gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331] Length = 875 Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust. Identities = 323/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 23 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC++ Sbjct: 83 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR PN+LVNG GIAVGMATNIP HNL Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 203 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+P+Q N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 263 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQS F NM+AL P ++ ++ +V + EV+V Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ ++EV+ +IR S E AR LM Sbjct: 382 RRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSNTVEIAREGLM------------ 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L I E + L +I E +I Sbjct: 430 --------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S + I+ +EL ++ D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 476 LASPEKQRQIVSEELAAIVDKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 536 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E++ Y+V ATK G V++ L D+ Sbjct: 596 RDARGQHVANLLAFQPDEQIAQILAIRDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 652 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + E+D+LL +K Q +RF + A+R GR + G Sbjct: 653 GGVIAINLRETESGADDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 711 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 712 VKGMSFREGDELLSMNVV 729 >gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] Length = 837 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 331/893 (37%), Positives = 527/893 (59%), Gaps = 75/893 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T I+ E++NS++ YA++VI+ RAIPD+RDG KPVHRR+L+ MG+ +K Y K A Sbjct: 19 VTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHDKPYKKSA 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A Y+ + RMAQD+S+R +L++G GNFGS+DGD AA RYTE RL Sbjct: 79 RLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAMRYTEARL 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L ++ K+TVDF NYDGS EP VL A +PN+L NG GIAVGMATNIP HNL Sbjct: 139 SKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMATNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++D + + N D ++ + ++++GPDFPT A I+G GI + + TGRGSI IR + Sbjct: 199 SEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIVGTDGINSYFETGRGSITIRSKAE 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 I + + QI++ EIPY VNK+ +++KI +LV+ + I IADLRDES R+G R+VIE+K Sbjct: 259 IIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGIRIVIEVK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + +V+LN+L++ T LQS FSVNM+AL +P+ + +L+ ++ + V+VR+TK+ Sbjct: 319 KDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKEPKLLNIKEVLQEYLKHQVNVLVRKTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +R H+L GL IAV N+D V++IIR S + + A ++L+ + Sbjct: 379 ELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITK--------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+++Q +AIL++RL L+ L R I EL + I+E IL S Sbjct: 424 -----------YKLTKIQAKAILDMRLRSLSNLERLKIEQELKEVKALIQELSGILKSSD 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + II +EL+++K+ R+T I+ G+ ++DED I E++V++ S Y+KR+ + Sbjct: 473 KQMDIISKELINLKNTYGDERKTEILYGVSASIDDEDLIPVENIVISRSANNYLKRISIE 532 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y+ QRRGG G GV ++D V D+ +THT +LFF+ G VY+ + +P GS Q++ Sbjct: 533 TYKIQRRGGVGVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSK 592 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +N++++ + E+I ++P ED ++ ++ AT G V+R LS++ I +GK Sbjct: 593 GVPALNLMNIEKNEKILVMLPV-ED---YSKGFLFLATTKGIVKRTSLSEYNSIKSNGKR 648 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L D++LS +++I L G RF +RV GR + GV+GI+ Sbjct: 649 AITLREGDQLLSAFLTRGKDEIYLGASNGLLTRFNEQDVRVM-GRTASGVKGIN------ 701 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 I + A+ ++I ++ +SGD Sbjct: 702 -----IEVKAEGRNKKKIDTSINVVGASSSLSGD-------------------------- 730 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 IL++ EKG GK + + ++R++ R KG+ + + ++ G L+ V +++I+ Sbjct: 731 ----LILSIGEKGLGKLSEAENYRLTRRGSKGV--VTLKQNDKTGKLIFSSAVKGDEEIL 784 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 +V+ G +IR + +R+ R+T GV + E+++S ++ E +E E Sbjct: 785 IVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYKKEEDENEIE 837 >gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305] gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305] Length = 952 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 344/906 (37%), Positives = 518/906 (57%), Gaps = 39/906 (4%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DEMQNSYLTYA++VI+ RA+PD+RDGLKP RRIL M + + N KC+ Sbjct: 21 IAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMNDLNLGPNGSRTKCS 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I+GE MG YHPHG+ AIY L RMAQDW++R +LI+ QGNFGS+ G PPAA RYTE RL Sbjct: 81 KITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLAGLPPAAHRYTEARL 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +TVDF P YD EP VL +R+PN+LVNG GIAVGMAT+IP HNL Sbjct: 141 SPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSGIAVGMATSIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV + VID P+ +D + +++ GPDFPTG VI G+ G + Y+TGR +I +R +H Sbjct: 201 TEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVICGQFGTRQGYSTGRSTITLRAKTH 260 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ--GYRVVIE 313 + T + IVVTEIPY + + EK+ LV+++R+ IA + D +DR+ ++V ++ Sbjct: 261 FD-TEKQSDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVVDLTDRKIPNWQVHLQ 319 Query: 314 --LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +V+LNQLY+Y+ LQ+ FS+ ++AL G +P+ ++ +L F+ R V+ R Sbjct: 320 IVLKRDADKEVVLNQLYKYSPLQTTFSIILLALVGNRPQLLSIKDMLLEFIRHRVTVIRR 379 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ L++AR R H + G+ IA N+DEV+ IR SP+ A+ L DIK Sbjct: 380 RTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKNRL-------RDIKVPA 432 Query: 432 DLI---------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 ++I + G+ LS Q AI+ ++L L L R+ + +E L Sbjct: 433 EMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKLGDEHRKLLE 492 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541 EI ECL +LS + + +++E+ ++ + RRT I E L D+ ++ I MVVT Sbjct: 493 EIDECLHLLSDEAHIRAAVREEMDDLQRKYPDKRRTEISEIELTDVNKDELIAEAPMVVT 552 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 ++ GY+KR L+ Y+AQ RGG+G +G +ED + +F+ STH+ +LFF++LG VY + Sbjct: 553 LTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVASTHSYLLFFTNLGRVYWQ 612 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 KV+ LP+ + A+G+AL+N+LSL GE + + E + + +++ ATK G V++ Sbjct: 613 KVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFD---DERFLMMATKKGVVKKTS 669 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS + + R G IA+KLD DE++ V E+D++++T G +RF R GRN+ Sbjct: 670 LSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFNHDDARAM-GRNT 728 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+G+SL K D V+ M + DE++C + G + Sbjct: 729 RGVKGVSLGKDDHVVGMVVA-------DEQMCLLTACENG----YGKRTPFGFGGASDAE 777 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 E + ++ + S S+ +R R GKG+R D+ G Sbjct: 778 EAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKRGGKGLR--DIRTTERNGKA 835 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 V + V D+D ++++S G + R+ +I R T+GV I +R+V + RI Sbjct: 836 VDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGDRLVGLARIPAEI 895 Query: 902 IVDEAE 907 VD E Sbjct: 896 NVDSDE 901 >gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] Length = 839 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 317/733 (43%), Positives = 461/733 (62%), Gaps = 37/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M G ++ YVKC+ Sbjct: 27 IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL RMAQ WSLR L++G GNFGS DP AA RYTEC+L Sbjct: 87 RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +DTVD + NYDG +EP +L +R PN+L+NG GIAVGMAT IP HNL Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++P+ D L+AL+EI++GPDFPT +I+G++GI++AY TGRGSI +R Sbjct: 207 REIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQSGIQDAYRTGRGSIRMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VV+E+PYQVN + E+IAEL++E ++ IAD+RDES R G R+ Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRI 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++ +V + EV+ Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA +RAH+L GL+ A+ LDEV+ +IR SP E AR+ L++ Sbjct: 387 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIR----------- 435 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL+++L RL L R I ++L L +EI + DI Sbjct: 436 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + + RRT+I+ ++ ED I RED+VVT++ GY KR Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDERRTKIIPFDGEVSMEDLIAREDVVVTITRTGYAKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +YR+QRRGGKG SG +R +D V+ F+ STH +LFF++ G VY+ K + LP S Sbjct: 541 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E+I I+ P + + Y+V ATK+G V++ +L +F Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 657 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ +D+LL +K Q +RF + A+R GR + GV G+ Sbjct: 658 GGIIAINLRDEDELVGAALVGPTDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 716 Query: 729 LAKGDQVISMAIV 741 + D++++M +V Sbjct: 717 FSDEDELLAMEVV 729 Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 15/143 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QRR++S + EI + D +G +S E +L +E ++T++ G+ KRT Sbjct: 487 QRRIVSEELGEIVAKWGDERRTKIIPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D I+ ++KG + R E+ AS Sbjct: 544 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 875 RATKG---VVIFSTAKDERVVSV 894 R KG + + DE++ + Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQI 623 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 20/208 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L + + R GG + +RDED + +V +L S + Sbjct: 635 LVLATKNGLVKKTRLEEFDSNRSGGI--IAINLRDEDELVGAALVGPTDDLLLVSKNAQA 692 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + F ++ R P R + + + + + + + E L V+ AT Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSDEDELLAM------EVVREGLDVLVATNG 741 Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK A + R ++ ++++ T G +R P+ Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L G ++++A Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829 >gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] Length = 873 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 332/750 (44%), Positives = 466/750 (62%), Gaps = 46/750 (6%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 + +E+ + I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G Sbjct: 11 AEEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYR 70 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126 K + KCAR+ G+VMG YHPHG+ +IYDAL R+AQ WS+R+ L++ GNFGS DP A Sbjct: 71 PEKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAA 130 Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTEC++ + +L D+ +DTVDF+ NYDG QEP VL AR PN+LVNG GIAVGM Sbjct: 131 AMRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGM 190 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 ATNIP HNL EV G +++P+ LDAL+E I+GPDFPTGA+++GR GI+ AY Sbjct: 191 ATNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVVGRKGIEEAYR 250 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRGSI +R V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ RI IAD+RDE Sbjct: 251 TGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDE 309 Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361 S R G R+VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ + Sbjct: 310 TSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHW 369 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 V + EVVVRRT++ L KA +RAH+L GL A+ ++DEV+ +IR S E AR LM Sbjct: 370 VTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLM--- 426 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 DL+ + EVQ AILE++L RL L R I E L Sbjct: 427 -------DLLS----------------IDEVQANAILEMQLRRLAALERQKILQEHAELQ 463 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I E IL+S + I+ +EL + ++ RR+++V DM ED I ED+VVT Sbjct: 464 EKINEYNAILASPEKQRRIVSEELAVIVEKYGDDRRSQLVPFDGDMSIEDLIAEEDIVVT 523 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GYVKR YR+Q+RGGKG G ++++D V F+ +TH +LFF++ G VY+ Sbjct: 524 ISRGGYVKRTRTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRA 583 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + LP ARG+ + N+L+ ERI I+ + E++ Y+V ATK G V++ Sbjct: 584 KAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYEAA---PYLVLATKAGLVKKTP 640 Query: 662 LSDFIQINRSGKIAMKL--------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS-- 711 L D+ G IA+ L + DE++ E + +D+LL +K Q +RF + Sbjct: 641 LKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKAQSIRFTATDE 700 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 A+R GR + GV+G+S +GD+++SM +V Sbjct: 701 ALRPM-GRATSGVKGMSFREGDELLSMNVV 729 >gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712] Length = 876 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 327/738 (44%), Positives = 461/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 20 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC+L Sbjct: 80 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ ++TVDF+ NYDG QEP VL +R+PN+L+NG GIAVGMATNIP HNL Sbjct: 140 MTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++PD LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 260 AVVEVEEIH-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +V + EV+V Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM DL Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLM----------DL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AILE++L RL L R I E + L +I E I Sbjct: 429 ----------------LQIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ +EL ++ ++ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 473 LASPERQRAIVSEELAALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E++ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDEQIAQILAIRDYEAAP---YLVLATKAGLVKKTALKDYDSPRS 649 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L S DE++ E + E+D+LL +K Q +RF + A+R GR + G Sbjct: 650 GGVIAINLRETEDGSDDELIGAELVSSEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S D+++SM +V Sbjct: 709 VKGMSFRADDELLSMNVV 726 >gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis] Length = 854 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 324/749 (43%), Positives = 466/749 (62%), Gaps = 40/749 (5%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YD-SASSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DPPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236 GIAVGMATN P HNLGE+ + ++N + D +A+ME ++GPDFPT +I+G G Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 239 Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 I++ Y TGRGSI +RGV IE+ S R IV+TE+PYQVN + IAE VR+ ++ I Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299 Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355 +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359 Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 +++ +V + +V+VRRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 360 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR- 418 Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475 LI+L+D + ++Q +AIL+++L RL L R I + Sbjct: 419 ------------AGLIELLD-------------IDDIQAQAILDMQLRRLAALERQKIVD 453 Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +L + EI + DIL+ R GI++ EL + D+ RRTRIV + DED I R Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAR 513 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 ED+VVT++ GY KR +Y +Q+RGGKG G ++ +D V F+ STH +LFF++ Sbjct: 514 EDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 573 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K + LP S ARG+ + N+L+ ERI ++ +S + Y+V AT++G Sbjct: 574 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATRNG 630 Query: 656 NVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--A 712 V+++KLSDF NRSG I A+ L DE++ C+ E+D+LL + Q +RF + A Sbjct: 631 LVKKSKLSDF-DSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEA 689 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV+G+ + D+++S+ +V Sbjct: 690 LRPM-GRATSGVQGMRFNEDDRLLSLNVV 717 >gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] Length = 840 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 320/733 (43%), Positives = 458/733 (62%), Gaps = 37/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M G ++ YVKC+ Sbjct: 28 IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 87 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL RMAQ WSLR L++G GNFGS DP AA RYTEC+L Sbjct: 88 RVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTECKL 147 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +DTVD + NYDG +EP +L +R PN+L+NG GIAVGMAT IP HNL Sbjct: 148 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPHNL 207 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ ++NPD+D LDAL+EI++GPDFPT +I+G I++AY TGRGSI +R Sbjct: 208 REIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHGLIVGTQAIQDAYRTGRGSIRMR 267 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VV+E+PYQVN + E+IAEL++E ++ IAD+RDES R G R+ Sbjct: 268 AVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSGRTGMRI 327 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++ +V + EV+ Sbjct: 328 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQIEVIR 387 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA +RAH+L GL+ A+ LDEV+ +IR SP E AR+ L++ Sbjct: 388 RRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIR----------- 436 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL+++L RL L R I ++L L +EI + DI Sbjct: 437 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + + RRT+IV ++ ED I RED+VVT++ GY KR Sbjct: 482 LAKPERQRRIVSEELGEIVAKWGDERRTKIVPFDGEVSMEDLIAREDVVVTITRTGYAKR 541 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +YR+QRRGGKG SG +R +D V+ F+ STH +LFF++ G VY+ K + LP S Sbjct: 542 TKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEAS 601 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E+I I+ P + + Y+V ATK+G V++ +L +F Sbjct: 602 RVAKGQHVANLLAFQADEQIAQIIEIPNYQVAP---YLVLATKNGLVKKTRLEEFDSNRS 658 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ +D+LL +K Q +RF + A+R GR + GV G+ Sbjct: 659 GGVIAINLRDEDELVGAALVAPSDDLLLVSKNAQAIRFNATDEALRPM-GRATSGVIGMR 717 Query: 729 LAKGDQVISMAIV 741 + D +++M +V Sbjct: 718 FSDEDVLLAMEVV 730 Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 12/125 (9%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QRR++S + EI + D +G +S E +L +E ++T++ G+ KRT Sbjct: 488 QRRIVSEELGEIVAKWGDERRTKIVPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 544 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D ++ ++KG + R E+ AS Sbjct: 545 DLYRSQRRGGKGVSGATLRQDDIVSHF---FVCSTHDWMLFFTNKGRVYRAKAYELPEAS 601 Query: 875 RATKG 879 R KG Sbjct: 602 RVAKG 606 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 22/209 (10%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L + + R GG + +RDED + +V+ +L S + Sbjct: 636 LVLATKNGLVKKTRLEEFDSNRSGGV--IAINLRDEDELVGAALVAPSDDLLLVSKNAQA 693 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATK 653 + F ++ R P+G +A ++ + E + M E L V+ AT Sbjct: 694 IRFNATDEALR-PMG------RATSGVIGMRFSDEDVLLAM-----EVVREGLDVLVATN 741 Query: 654 HGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 G +R + ++ R GK A + R ++ ++++ T G +R P+ Sbjct: 742 GGYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIHPDDELFAITSNGGVIRTPV 801 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L G ++++A Sbjct: 802 KPVRRTRDRNTMGVKLMDLPDGVTIVAIA 830 >gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] Length = 883 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 324/742 (43%), Positives = 464/742 (62%), Gaps = 43/742 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E I SV + EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ + Sbjct: 23 EHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRAF 82 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KC+R+ G+VMGK+HPHG+ AIYDAL R+ QDWSLR L+ GQGNFGS DP AA RYT Sbjct: 83 SKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYT 142 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 ECR+ A ++ D+ KDTVDF+ NYDG QEP +L +R+PN+LVNG GIAVGMATNIP Sbjct: 143 ECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVGMATNIP 202 Query: 192 THNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 HNL EV +G +D+PD LD+L+ II+GPDFPTGA ILG GI++AY TGRGS Sbjct: 203 PHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATILGHRGIEDAYRTGRGS 262 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306 I +R + ++E+ +R +VVTE+PYQVN + KIAELV++ R+ IAD+RDE S R Sbjct: 263 ITMRAIVNVEEIQ-NRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIRDETSGRT 321 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VI LKR A A V+LN LY++T LQ F NM+AL P ++ ++ +VA + Sbjct: 322 GQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRTLSIDAFIRHWVAHQL 381 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EV+VRRT +LL +A + H+ G A+ LD+V+ +IR SP+ + AR Sbjct: 382 EVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRAR------------ 429 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + LI+++D + E+Q AIL ++L RL L R +I +E + L EI E Sbjct: 430 -QGLIEMLD-------------IDEIQATAILNMQLRRLAALQRQEIIDEHDKLEKEILE 475 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 DIL+ SR I+ EL + + RRT ++ ++ ED I E+MVVT++ G Sbjct: 476 YQDILAKESRQRQIVSDELNELVAKYGDERRTTVLPHAGEVSMEDLIAEEEMVVTITRGG 535 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y KR YRAQ+RGGKG G +R++D V F+ +TH +LFF++LG VY+ K + L Sbjct: 536 YAKRTRSDNYRAQKRGGKGVRGAQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYEL 595 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P G A+G+ + N+L+ GE+I ++ + + + Y+V AT+ G V++ +LS++ Sbjct: 596 PEGGRDAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD---YLVLATRRGTVKKTRLSEYD 652 Query: 667 QINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719 G IA+ L DE++S +D++L ++ GQ +RF S A+R GR Sbjct: 653 SNRSGGVIAINLREDADGQPDELVSARLVDATDDLILVSRKGQSIRFTASDEAMRPL-GR 711 Query: 720 NSVGVRGISLAKGDQVISMAIV 741 + GV G+ + D++++M +V Sbjct: 712 ATSGVTGMKFREDDELLAMDVV 733 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 74/152 (48%), Gaps = 9/152 (5%) Query: 759 SAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 S QR+++S + E+ + D ++V + E ++L +E+ ++T++ G+ KRT S Sbjct: 484 SRQRQIVSDELNELVAKYGDERRTTVLPHAGEVSMEDLIAEEEMVVTITRGGYAKRTRSD 543 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 ++R R GKG+R +++ E + F + ++ ++ G + R E+ R Sbjct: 544 NYRAQKRGGKGVRG---AQLREDDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGR 600 Query: 876 ATKG---VVIFSTAKDERVVSVERIRESEIVD 904 KG + + E++ V +R+ ++ D Sbjct: 601 DAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD 632 >gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] Length = 855 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 3 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC++ Sbjct: 63 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 123 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 183 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+P+Q N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 243 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+V Sbjct: 302 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 362 RRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L I E + L +I E +I Sbjct: 410 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S ++ I+ +EL ++ D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 456 LASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 516 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 575 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E+ Y++ ATK G V++ L D+ Sbjct: 576 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 632 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L DE++ E + E+D+LL +K Q +RF + A+R GR + G Sbjct: 633 GGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 691 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 692 VKGMSFREGDELLSMNVV 709 >gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] Length = 879 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 321/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 27 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC++ Sbjct: 87 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 147 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 207 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+P+Q N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 267 AVVAVEEIQG-RQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 325 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+V Sbjct: 326 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 385 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 386 RRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------------ 433 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L I E + L +I E +I Sbjct: 434 --------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEI 479 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S ++ I+ +EL ++ D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 480 LASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVKR 539 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 540 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 599 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E+ Y++ ATK G V++ L D+ Sbjct: 600 RDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPRS 656 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L DE++ E + E+D+LL +K Q +RF + A+R GR + G Sbjct: 657 GGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATSG 715 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 716 VKGMSFREGDELLSMNVV 733 >gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977] gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium abscessus] Length = 839 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 317/733 (43%), Positives = 455/733 (62%), Gaps = 37/733 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M G ++ + K A Sbjct: 17 IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS DP AA RYTE RL Sbjct: 77 RSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARL 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L ++ ++TVDF PNYDG EP VL +R+PN+L NG GGIAVGMATN+P HNL Sbjct: 137 TPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNL 196 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ + +DN + D L A+ E I GPDFPT +I+G GI +AY TGRGSI +R Sbjct: 197 RELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGTQGIHDAYTTGRGSIRMR 256 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ S R +V+TE+PYQVN + IAE VR+ +I I+++ D+ SDR G R+ Sbjct: 257 GVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAGISNIEDQSSDRVGLRI 316 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ+ F NM+++ P L +++ +V + +V++ Sbjct: 317 VVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVNHQLDVII 376 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR L Sbjct: 377 RRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR-------------TGL 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I+L+D + E+Q +AIL+++L RL L R I ++L + EI + DI Sbjct: 424 IELLD-------------VDEIQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDI 470 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+K EL + ++ RRTRI+ D+ DED I RED+VVT++ GY KR Sbjct: 471 LAKPERQRAIVKDELAEITEKYGDDRRTRIISADGDVADEDLIAREDVVVTITETGYAKR 530 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + LP + Sbjct: 531 TKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ ERI ++ +S + Y+V ATK+G V+++KL++F Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQI---KSYEDAPYLVLATKNGLVKKSKLTEFDSNRS 647 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G +A+ L DE++ C+ E+D+LL + GQ +RF + A+R GR + GV+G+ Sbjct: 648 GGLVAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEALRPM-GRATSGVQGMR 706 Query: 729 LAKGDQVISMAIV 741 D ++S+ +V Sbjct: 707 FNGEDDLLSLNVV 719 Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 15/150 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++ + EIT D S +G++++E +L +E ++T++E G+ KRT + Sbjct: 477 QRAIVKDELAEITEKYGDDRRTRIISADGDVADE---DLIAREDVVVTITETGYAKRTKT 533 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG++ + + + + F + +D I+ + KG + R ++ A+ Sbjct: 534 DLYRSQKRGGKGVQGAGLKQDDIVKHF---FVCSTHDWILFFTTKGRVYRAKAYDLPEAA 590 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESE 901 R +G + + +ER+ V +I+ E Sbjct: 591 RTARGQHVANLLAFQPEERIAQVIQIKSYE 620 Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust. Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 22/220 (10%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-- 596 +V + G VK+ L+ + + R GG V +RD D + + S +L S+ G Sbjct: 625 LVLATKNGLVKKSKLTEFDSNRSGGL--VAVNLRDGDELVGAVLCSAEDDLLLVSAHGQS 682 Query: 597 --FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 F ++ R P R + + + N + + ++ E Y++ AT Sbjct: 683 IRFSATDEALR-----PMGRATSGVQGMRFNGEDDLLSLNVVRE------GTYLLVATSG 731 Query: 655 GNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK + ++ D R ++ +E+++ T G +R Sbjct: 732 GYSKRTAIEEYPVQGRGGKGVLTVQYDPRRGSLVGALVVDEESELYAITSGGGVIRTIAK 791 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAI-VLHADADYDE 750 +R AGR + GVR ++L +GD ++++A DAD DE Sbjct: 792 QVRK-AGRQTKGVRLMNLGEGDTLLAIAHNADEGDADPDE 830 >gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium] Length = 836 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 335/885 (37%), Positives = 513/885 (57%), Gaps = 88/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ ++ + K A Sbjct: 20 VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+RYTE RL Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDTVDF NYDG +EP VL A +PN+L NG GIAVGM+T+IP+HNL Sbjct: 140 SKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G + +IDNP L+ +I+GPDFPTGA I+ GI++ + TG+G++VIR Sbjct: 200 SELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVE 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R +VVTEIPY VNK ++EKI ELV+ + I IAD+RDES R+G R+VIE+K Sbjct: 260 IEQLQ-TRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQL++ T LQ F VNM+AL P + L+ ++ + +V+VR+TK+ Sbjct: 319 RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 +LNK ++R H+L GL IA N+DEVV II+ S N + A L + Sbjct: 379 VLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK--------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q +A+L++RL L+ L + ++ E L I+ C +L+ + Sbjct: 424 -----------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQK 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L IIK+EL + D+ RR+ I+ + +++DE I E++V+T+S GY+KR+ + Sbjct: 473 LQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVD 532 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P G + Sbjct: 533 AYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNK 592 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +N++ + + ERI +++ +++++ Y F TK+G V+R L++FI I +GK+ Sbjct: 593 GIPAVNLIKIEKDERICSLLSV----NNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKL 648 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ D D + SV ++I + + G VRF + +RV + R + GV GISL KG+ Sbjct: 649 AISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGISLNKGEF 707 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V N S N S Sbjct: 708 V-----------------------------------------NGLSTSSNGS-------- 718 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V N+ ++ Sbjct: 719 ----LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTVFGNEDLL 772 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++S G ++R + E+ + T GV + +ER+ V +E Sbjct: 773 MISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKE 817 >gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira pseudonana CCMP1335] gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira pseudonana CCMP1335] Length = 820 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 330/870 (37%), Positives = 497/870 (57%), Gaps = 95/870 (10%) Query: 30 LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89 + YA+++ILGRA+PD RDG+KPVHRRIL+ M +G+ + Y KCAR+ GEV+GKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 90 NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK-AAHFLLDDLGK 148 + A+YDAL R+AQ +S + LI+G GNFGS+D DP AA RYTECRL + AA LLDD+ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120 Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID- 207 DTV+F PN+DGS EP VL A+ P +L+NGG GIAVGMATN+P HNLGE++D CVA+ Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180 Query: 208 ----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE------ 257 ++ L++II PDFPTGA I+G++G ++ Y TG G +V+R V H+E Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240 Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 K R I+VTE+PYQVNKAA+LE+IA LV EK++ IADLRDESDR G R+VIELKR Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374 A A V+ N L + TSLQ+ FS N +AL G P+RFTL L F+ FR + + + Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L+K +RAH++ GL IA+ + DEV+ I+R +P+ +AR LM Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMST-------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + + LS Q A+L+L+L +LT L D + +E +L ++L++ Sbjct: 407 --------DNPKLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTND 458 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + + +E +++K TPR+T+I+ D D D + E V+ V+ GY+KR+PL Sbjct: 459 AAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLK 518 Query: 555 VYRAQRRGGKGRSGV--VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + +Q RG +G+ G + D++ V F + H +VL + G Y + +++P G Sbjct: 519 TFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRT 578 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 ARG + ++L + + IT+++P E N ++V AT++G +++ L+ F ++ + G Sbjct: 579 ARGAPIPSVLPVKSDDVITSVLPVSE---FSKNEFIVLATEYGWIKKTPLAAFEKLTQRG 635 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 I L D + E CT +DIL+ + GQ RF + +R A R S GV+ ++L KG Sbjct: 636 LIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRPTA-RTSRGVKSMTLKKG 694 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D + M ++ D Sbjct: 695 DTIADMNVLRKED----------------------------------------------- 707 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 +F+L V+ +G+GKR + +FR + R G G+ A + + VN++D+ Sbjct: 708 -----KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVI 882 I+L++ +G ++R V++I RA GV++ Sbjct: 763 ILLITSQGVIVRQKVSDISCQGRAATGVLV 792 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 18/222 (8%) Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 + + +V + G++K+ PL+ + ++ +G + D D + + + +L S+ Sbjct: 607 KNEFIVLATEYGWIKKTPLAAF--EKLTQRGLIIATLADGDRLNWCEKCTDNDDILVGST 664 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 G + K L P AR + ++L +G+ I + +++ +V+ T Sbjct: 665 RGQATRFKAADL---RPTARTSRGVKSMTLKKGDTIADMNVLRKEDK-----FVLVVTTE 716 Query: 655 GNVRRNKLSDFIQINR--SGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFP 709 G +R +F R SG IA+K + D I ++ ++++ILL T G VR Sbjct: 717 GYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLITSQGVIVRQK 776 Query: 710 ISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYD 749 +S I GR + GV + + + GD + +++IV DAD D Sbjct: 777 VSDISC-QGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGD 817 >gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] Length = 819 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 341/888 (38%), Positives = 503/888 (56%), Gaps = 90/888 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I V + +EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M + G K + Sbjct: 3 EQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKAFS 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ G+VMG++HPHG+AAIYDAL R+ Q W++R L +GQGNFGS D AA RYTE Sbjct: 63 KCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 ++ A ++ D+ +DTVDF PNYDG EP V+ R+PN+LVNG GIAVGMATNIP Sbjct: 123 TKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 HNL EV G + ++NPD +AL+E I+GPDFPTGA +L GIK+AY TGRGS+ Sbjct: 183 HNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307 V+RGV IE+ G R +VV E+PYQVN + KIA LV+E ++ IAD+RDE S R G Sbjct: 243 VMRGVVDIEEIDG-RTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRTG 301 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R++I LKR A A V+LN LY++T LQ F VNM+A+ P +L ++ +V + E Sbjct: 302 QRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCSFIRLWVEHQIE 361 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+VRRT + L +A RAH+L A+ +DEV+++IR S + E A+ LM Sbjct: 362 VIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLM--------- 412 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 + + E Q RAIL+L+L RL L R I +E + I Sbjct: 413 -----------------ALLKIDETQARAILDLQLRRLAALERQRIISEAREIEELISSF 455 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLG 546 ILS ++ +I +EL + + RRT I+ G + ED I E +VV ++ G Sbjct: 456 RKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIEDLIPVEPVVVVMTRCG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR + YR+Q RGG+G G ++ +D V +TH ++FF++ G VY+ K + + Sbjct: 516 YIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEV 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P S +ARG+ + N+L L E +T I+ +S +L V ATK G V++ L ++ Sbjct: 576 PEASREARGQHVANLLPLKPNEAVTRILSVSNFDSEDTSL--VLATKDGYVKKTTLKEYD 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +G IA+KL D+++S + DI+L TK + +RF +R + R S GV+G Sbjct: 634 TSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLS-RGSYGVKG 692 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ISL + D ++S ++L D+ Sbjct: 693 ISLRENDLLLSAELILSDDS---------------------------------------- 712 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +I VSE+G+ KR+ D+++ R G G+R ++++ + G L + Sbjct: 713 ------------YIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITE--QKGVLADMLV 758 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 VND+D+++++ G +IR V E+ R T GVV + ++++++ Sbjct: 759 VNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAM 806 >gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] Length = 856 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 315/723 (43%), Positives = 456/723 (63%), Gaps = 32/723 (4%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G + Y K A G Sbjct: 20 VKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPQHPYRKSADTVGA 79 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A++YDA+ R+AQD+SLR L++GQGNFGSVDGDPPAA RYTE R+ K A Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSKIAC 139 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDT+D+ PN+D + +EP VL +R+PN+LVNG GIAVGMATNIP HNL EVV Sbjct: 140 EMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQGIAVGMATNIPPHNLREVVA 199 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G A++DNPDIDL LME ++GPDFPTG +I+GR+GI+ AYATGRG I +RG + I + Sbjct: 200 GMCALMDNPDIDLAGLMEFVKGPDFPTGGIIMGRSGIRAAYATGRGKITLRGRAEIVEKK 259 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319 R +I++TEIPY VNK ++E IA+LV++KRI I+DL DE S R G ++VIE+K+ A+ Sbjct: 260 NGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLNDESSSRTGMKIVIEIKKDAN 319 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 V+LNQLYRYT LQ V M+AL+ P+ +L +++ ++ F+ EV+ RRT + L K Sbjct: 320 PQVVLNQLYRYTQLQDTVGVIMLALDDGVPKIMSLKTVMERYIDFQMEVIRRRTAFDLKK 379 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A++R H+L GL AV +DE++ IR R+ + ++ Sbjct: 380 AQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVMDNFG---------------- 423 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 E+Q AI++L+L RL GL I EL L I + DILS+ + Sbjct: 424 ---------FDELQADAIVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKR 474 Query: 500 IIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557 I+K +L ++ D+ RRT I V G +D+ ED I E + T++H GY+KR L Y+ Sbjct: 475 IVKTDLQTLADKYGDERRTSIEAVSGEVDI--EDLIPEETCIFTLTHEGYIKRTTLDTYQ 532 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ RGG+G G+ +D+DF +LF+ STH +LF + G VY+ K +++P GS A+G Sbjct: 533 AQNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSH 592 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 ++N+L L +GE++ T+M ++ +N Y+ T+ G ++R LS F I ++G IA+ Sbjct: 593 IVNLLQLQEGEKV-TLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIG 651 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L+ D ++ ++I++ T G + F S R GR GVR I L +GD VI Sbjct: 652 LNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAM-GRTGHGVRVIRLREGDYVIG 710 Query: 738 MAI 740 + Sbjct: 711 AGV 713 Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 82/163 (50%), Gaps = 18/163 (11%) Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFI 800 A ADY + + +H+ +R++ D + + D +S+E E ++L +E I Sbjct: 458 AIADYKDILSNDEHV---KRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCI 514 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 T++ +G+ KRT+ ++ NR G+G++ K ++ +F + +D ++ ++D+G Sbjct: 515 FTLTHEGYIKRTTLDTYQAQNRGGRGVQGM-TQKDDDFTE--ELFVGSTHDYMLFMTDQG 571 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 + R+ ++ SR TAK +V++ +++E E V Sbjct: 572 RVYRLKGYQVPEGSR---------TAKGSHIVNLLQLQEGEKV 605 >gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440] gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440] Length = 839 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 318/736 (43%), Positives = 461/736 (62%), Gaps = 37/736 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M G ++ YVKC+ Sbjct: 27 IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL RMAQ W+LR L++G GNFGS DP AA RYTEC+L Sbjct: 87 RVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L D+ +DTVD + NYDG +EP +L +R PN+LVNG GIAVGMAT IP HNL Sbjct: 147 EPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++P+ D L+AL+ I++GPDFPT +I+GR GI++AY TGRGSI +R Sbjct: 207 REIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIVGRAGIQDAYRTGRGSIRMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VV+E+PYQVN + E+IAEL++E ++ IAD+RDES R G R+ Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTGMRL 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++ +VA + EV+ Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVAHQIEVIR 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA +RAH+L GLA A+ LDEV+ +IR SP + AR+ L++ Sbjct: 387 RRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIR----------- 435 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AIL+++L RL L R I ++L L +EI + DI Sbjct: 436 ---------------LLEIDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + + RRT+I+ ++ ED I RED+VVT++ GY KR Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSMEDLIAREDIVVTITRTGYAKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR+QRRGGKG SG +R +D V+ F+ STH +LFF++ G VY+ K + LP S Sbjct: 541 TKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E+I I+ + + + Y+V ATK+G V++ +L +F Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQVAP---YLVLATKNGVVKKTRLEEFDSNRS 657 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ E D+LL +K +RF + A+R GR + GV G+ Sbjct: 658 GGIIAINLREDDELVGAALVAPEQDLLLVSKNALAIRFNATDEALRPM-GRATSGVIGMR 716 Query: 729 LAKGDQVISMAIVLHA 744 ++ D++++M +V H Sbjct: 717 FSEDDELLAMEVVRHG 732 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 15/151 (9%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QRR++S + EI + D +G +S E +L +E ++T++ G+ KRT Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSME---DLIAREDIVVTITRTGYAKRTKV 543 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D I+ ++KG + R E+ AS Sbjct: 544 DAYRSQRRGGKGVSGASLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902 R KG + + DE++ + I + ++ Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQV 631 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 20/208 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L + + R GG + +R++D + +V+ +L S + Sbjct: 635 LVLATKNGVVKKTRLEEFDSNRSGGI--IAINLREDDELVGAALVAPEQDLLLVSKNALA 692 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + F ++ R P R + + + ++ + + + E + L V+ AT Sbjct: 693 IRFNATDEALR-----PMGRATSGVIGMRFSEDDELLAM------EVVRHGLDVLVATNG 741 Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK A + R ++ ++++ T G +R P+ Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L G ++++A Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829 Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 22/226 (9%) Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +S+E DI++T T+ G R + A R R GV G SL + D ++S V Sbjct: 517 VSMEDLIAREDIVVTITRTGYAKRTKVDAYRS-QRRGGKGVSGASL-RQDDIVSHFFVCS 574 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE-- 797 + I + + R + + E + + V ++ E+ Q +++ + Sbjct: 575 TH----DWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQ 630 Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +++ ++ G K+T +F SNRSG GI A ++ + +E+ V P D ++L Sbjct: 631 VAPYLVLATKNGVVKKTRLEEFD-SNRSG-GIIAINLREDDELVGAALVAPEQD---LLL 685 Query: 856 VSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899 VS IR + +R RAT GV+ ++D+ ++++E +R Sbjct: 686 VSKNALAIRFNATDEALRPMGRATSGVIGMRFSEDDELLAMEVVRH 731 >gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] Length = 834 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 347/843 (41%), Positives = 495/843 (58%), Gaps = 56/843 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G ++ YVKCA Sbjct: 14 IEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYVKCA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+G YHPHG+AA+YD L R+AQ W +R L++GQGNFGS DP AA RYTECRL Sbjct: 74 RVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGNDPAAAMRYTECRL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+GK+TVDF PNYDG EPV+L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 134 TPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGIAVGMATNIPPHNL 193 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++PD L AL+E I+GPDFPTG VI+G GI+ AY TGRGSIV+R Sbjct: 194 REVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIVGHAGIEEAYRTGRGSIVMR 253 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ + R+ +VVT++PYQVN + +IAELV E RI IAD+RD+ S R G R+ Sbjct: 254 AVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIADIRDDSSSRTGQRL 313 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A V+L LY++T LQ F NMVAL P +L ++ +VA + +V+V Sbjct: 314 VISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDNVPRTLSLDAFIRHWVAHQIDVIV 373 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A RAH+L GL A+ LD V+ +IR S + + AR LM+ L Sbjct: 374 RRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARSGLME----------L 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + EVQ AIL+++L +L L R I ++L EI + DI Sbjct: 424 LD----------------VDEVQATAILDMQLRKLAALERQAIIDDLAKHEAEIADLNDI 467 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ SR I+ +EL + D+ RRT IV D+ ED I ED+VVT++ GY KR Sbjct: 468 LANESRQRAIVSEELKEIVDKYGDERRTAIVPADGDVSIEDLIAEEDVVVTITRGGYAKR 527 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 S+YR+QRRGGKG G +R +D V F+ +TH +LFF+ G VY+ K + +P + Sbjct: 528 TKTSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAA 587 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I ++ + +++ Y+V AT+ G V++ L +F Sbjct: 588 RSARGQHVANLLAFQPDEKIAQVLALRDYDAAP---YLVLATRSGLVKKTALREFDSNRT 644 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGIS 728 G IA+ L D ++ + ++++LL ++ Q +RF A+R GR + GV G+ Sbjct: 645 GGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEALRPM-GRATSGVIGMR 703 Query: 729 LAKGDQVISMAIV-------LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 D +++M +V + Y +R ++ R T +IT+ + D Sbjct: 704 FHDDDALLAMMVVRPQAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKITAERGDLVG 763 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 + E E +L ++ G RT + R ++R+ G+R D++ E AL Sbjct: 764 ALMVDE---------EDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLA---ENDAL 811 Query: 842 VAV 844 VA+ Sbjct: 812 VAI 814 >gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] Length = 865 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 322/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 21 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 81 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 141 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ LDAL++ I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 201 REVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 260 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 261 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 319 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +VA + EV+V Sbjct: 320 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 379 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM DL Sbjct: 380 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 430 LE----------------IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEI 473 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ QEL ++ ++ R+T+++ DM ED I ED+VVTV+ GY+KR Sbjct: 474 LASPVRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 533 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 534 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAG 593 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I + E+ Y+V ATK G V++ L D+ Sbjct: 594 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTSLKDYDSPRS 650 Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + ++D+LL ++ Q +RF + +R GR + G Sbjct: 651 GGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 709 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 710 VKGMSFREGDELLSMNVV 727 >gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581] gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae] Length = 867 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 318/888 (35%), Positives = 528/888 (59%), Gaps = 90/888 (10%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 + E+ I I +EM+NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ N Sbjct: 59 DSEKNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNS 118 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+ ++YD++ RMAQ +SLR L++G GNFGS+DGD AA R Sbjct: 119 AYKKSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 178 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++ + K+TVDF PNYDGS QEP VL R+PN+LV+G GIAVGMAT Sbjct: 179 YTEARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATK 238 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + N DI ++ L + + GPDFPTGA I G +GI+ AY TGRGS + Sbjct: 239 IPPHNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIFGVSGIQQAYKTGRGSFI 298 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE + + +I+ EIPY+V K A++EK+ +LV+EKR+ I D+RDE++RQG R Sbjct: 299 LRAKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIR 358 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV E+K+G + ++ILNQLY+ T Q +S+NM+A+ +P+ L IL ++ ++E+ Sbjct: 359 VVFEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGEPKLLNLKEILYQYLLHQKEIN 418 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R + L K +++ +VL+G+ +AV N+DEVV+II+ S + A+ +L +R Sbjct: 419 LRGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKR--------- 469 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+ +QT+AI+++RL RLT L + + E+ + EI + Sbjct: 470 -----------------FDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEE 512 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 I++S +L+ ++ + L + + PRR+ I + ++ DED I R D++++++ YVK Sbjct: 513 IIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPRSDVIISLTDNNYVK 572 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R+ L YR Q RGG G S + +D++ ++ +THT +L +S ++K + ++P Sbjct: 573 RINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDS 632 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 + Q +G +N+L + + E+I T++ + +D + + ++V ++ G +++ L + IN Sbjct: 633 TKQGKGIPFVNLLPIEKDEQIYTLLVWNQD---YAHHFLVTVSRLGLIKKTPLEFYKNIN 689 Query: 670 RSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 ++GK A+KL+ D ++S +EN ++L+ + G+ +F +IR GR ++GV+G Sbjct: 690 KNGKYALKLNENDTLVSA-FIVKENEPCEVLIGSSSGKVNKFDFDSIRS-TGRVAMGVKG 747 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + VI + H+ +SG Sbjct: 748 IKLTNDEFVIGAS---HS--------------------LSG------------------- 765 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++ + G+GK+TS ++R ++R+ KG++ + K G+L + Sbjct: 766 -----------EYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNTEK---AGSLCFISI 811 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + N++ ++V+ KG LIR + +I I SR TKGV I + ++ + SV Sbjct: 812 IKGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSV 859 >gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] Length = 871 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 320/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 23 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 83 RVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ LDAL+E I+GPDFPTGA+++GR GI++AY TGRGSI +R Sbjct: 203 REVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGALVVGRNGIEDAYRTGRGSITMR 262 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 263 AVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 321 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+V Sbjct: 322 VVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 381 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 382 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM------------ 429 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R I E + L +I + I Sbjct: 430 --------------GLLEIDEIQANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAI 475 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S I+ +EL ++ D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 476 LASPELQRKIVSEELAAIVDKFGDDRRSKLVPFEGDMSVEDLIAEEDIVVTISRGGYVKR 535 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 536 TKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 595 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + +++ Y+V ATK G V++ L D+ Sbjct: 596 RDARGQHVANLLAFQPDEQIAQILAIRDYDAA---PYLVLATKGGLVKKTSLKDYDSPRS 652 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + E+D+LL ++ Q +RF + A+R GR + G Sbjct: 653 GGVIAINLRETESGADDELIGAELVSAEDDLLLISRKAQSIRFTATDDALRPM-GRATSG 711 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 712 VKGMSFREGDELLSMNVV 729 >gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA] gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA] Length = 648 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 303/643 (47%), Positives = 426/643 (66%), Gaps = 34/643 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M++SY+ YA++VI RA+PD+RDGLKPV RRIL+ M+++ +K + KCA Sbjct: 9 VHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+ MGKYHPHG+++IY AL MAQ+WS R L++G GNFGSVDGD AA RYTE RL Sbjct: 69 RIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + + L D+ KDTVDF PN+D + +EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 EV+ V +ID N + ++ +++I++GPDFPTGA+ILG GI+ AY TGRG I + Sbjct: 189 REVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRTGRGKIRV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R V+ IE + + +IVVTE+PY VNKA ++EKIAELVR+K+I I DL D+S+R+G R+ Sbjct: 249 RAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREGMRI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL+R +A+V+LNQLY++T LQ F V M+AL +P+ ++ +L ++ +EEVV Sbjct: 309 CIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLRHQEEVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ L++ Sbjct: 369 RRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE----------- 417 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++VQ +AI+++RL LTGL R+ + NE L I E I Sbjct: 418 ---------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R LLG+IK+E+L + + RRT I LD+ ED I +D+V+T++ LGY+KR Sbjct: 463 LADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMTKLGYIKR 522 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + +++Q RGGKG G+ +ED+V +LF+ STH ++FF++ G VY+ K + +P Sbjct: 523 MTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAG 582 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 ARG A+IN+L L E+IT ++P E E Y+ ATK Sbjct: 583 RTARGTAIINLLQLMPDEKITAMIPIREYEDGK---YLFMATK 622 Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 750 ERICYMKHMSAQRRLISGDTEE----ITSLKND---SSVEGNISEERCQELKLKEQFILT 802 ERI ++ + A R+L+ G +E I+ D +S+ + + ++L ++ ++T Sbjct: 454 ERIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVIT 513 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +++ G+ KR ++ F+ NR GKGI+ + + + L F + ++ I+ ++ G + Sbjct: 514 MTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEEL---FMTSTHNYIMFFTNTGRV 570 Query: 863 IRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESE 901 R+ EI A R +G I + + DE++ ++ IRE E Sbjct: 571 YRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE 612 >gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205] gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205] Length = 839 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 322/736 (43%), Positives = 461/736 (62%), Gaps = 37/736 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL+ M G ++ YVKC+ Sbjct: 27 IEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVKCS 86 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL RMAQ W+LR L++G GNFGS DP AA RYTEC+L Sbjct: 87 RVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRYTECKL 146 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ +DTVD + NYDG +EP +L +R PN+LVNG GIAVGMAT IP HNL Sbjct: 147 DPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKIPPHNL 206 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++P+ D L+AL+ I++GPDFPT +I+G+ GI++AY TGRGSI +R Sbjct: 207 REIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIVGQAGIQDAYRTGRGSIRMR 266 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 V +E+ R +VV+E+PYQVN + E+IAEL+RE ++ IAD+RDES R G R+ Sbjct: 267 AVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIREGKLGGIADIRDESSGRTGMRL 326 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY++T LQ F NM+AL P L ++++V + EV+ Sbjct: 327 VLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRSYVEHQIEVIR 386 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KA +RAH+L GLA A+ LDEV+ +IR SP + AR + L Sbjct: 387 RRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDAR-------------QGL 433 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I L+D + E+Q AIL+++L RL L R I ++L L +EI + DI Sbjct: 434 IRLLD-------------IDEIQATAILDMQLRRLAALERQRILDDLVKLELEIADFKDI 480 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ +EL + + RRT+I+ ++ ED I RED+VVT++ GY KR Sbjct: 481 LAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSMEDLIAREDVVVTITRTGYAKR 540 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + YR+QRRGGKG SG +R +D V+ F+ STH +LFF++ G VY+ K + LP S Sbjct: 541 TKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E+I I+ + + + Y+V ATK+G V++ KL +F Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQVAP---YLVLATKNGVVKKTKLEEFDSNRS 657 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGIS 728 G IA+ L DE++ E D+LL +K +RF S A+R GR + GV G+ Sbjct: 658 GGIIAINLREDDELVGAALVAPEQDLLLVSKNALAIRFNASDEALRPM-GRATSGVIGMR 716 Query: 729 LAKGDQVISMAIVLHA 744 ++ D++++M +V H Sbjct: 717 FSEDDELLAMEVVRHG 732 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 15/151 (9%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QRR++S + EI + D +G +S E +L +E ++T++ G+ KRT Sbjct: 487 QRRIVSEELGEIVAKWGDDRRTQIIPFDGEVSME---DLIAREDVVVTITRTGYAKRTKV 543 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 +R R GKG+ + + + + F + +D I+ ++KG + R E+ AS Sbjct: 544 DAYRSQRRGGKGVSGASLRQDDIVSHF---FVCSTHDWILFFTNKGRVYRAKAYELPEAS 600 Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEI 902 R KG + + DE++ + I + ++ Sbjct: 601 RVAKGQHVANLLAFQPDEQIAQIIEISDYQV 631 Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust. Identities = 41/208 (19%), Positives = 90/208 (43%), Gaps = 20/208 (9%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS----S 594 +V + G VK+ L + + R GG + +R++D + +V+ +L S + Sbjct: 635 LVLATKNGVVKKTKLEEFDSNRSGGI--IAINLREDDELVGAALVAPEQDLLLVSKNALA 692 Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + F ++ R P R + + + ++ + + + E + L V+ AT Sbjct: 693 IRFNASDEALR-----PMGRATSGVIGMRFSEDDELLAM------EVVRHGLDVLVATNG 741 Query: 655 GNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 G +R + ++ R GK A + R ++ ++++ T G +R P+ Sbjct: 742 GYAKRTPIEEYPVQGRGGKGVLTAKITERRGGLVGAVVIDPDDELFAITSNGGVIRTPVK 801 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMA 739 +R RN++GV+ + L G ++++A Sbjct: 802 PVRRTRDRNTMGVKLMDLPDGVTIVAIA 829 Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 104/226 (46%), Gaps = 22/226 (9%) Query: 685 LSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743 +S+E D+++T T+ G R + A R R GV G SL + D ++S V Sbjct: 517 VSMEDLIAREDVVVTITRTGYAKRTKVDAYRS-QRRGGKGVSGASL-RQDDIVSHFFVCS 574 Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS----EERCQELKLKE-- 797 + I + + R + + E + + V ++ E+ Q +++ + Sbjct: 575 TH----DWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQ 630 Query: 798 --QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +++ ++ G K+T +F SNRSG GI A ++ + +E+ V P D ++L Sbjct: 631 VAPYLVLATKNGVVKKTKLEEFD-SNRSG-GIIAINLREDDELVGAALVAPEQD---LLL 685 Query: 856 VSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899 VS IR ++ +R RAT GV+ ++D+ ++++E +R Sbjct: 686 VSKNALAIRFNASDEALRPMGRATSGVIGMRFSEDDELLAMEVVRH 731 >gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074] gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074] gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074] Length = 875 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 323/738 (43%), Positives = 462/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 25 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 84 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 85 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 144 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG +EP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 145 APLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARFPNLLINGSAGIAVGMATNIPPHNL 204 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ D LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 205 REVAAGAQWYLENPEADPDTLLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 264 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ RI IAD+RDE S R G R+ Sbjct: 265 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQRL 323 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +VA + EV+V Sbjct: 324 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 383 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S + AR LM+ Sbjct: 384 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRASQTVDVARGGLME----------- 432 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + + E+Q AILE++L RL L R I E + L +I E I Sbjct: 433 ---------------LLEIDEIQANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAI 477 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R II +EL ++ D+ RR+ +V DM ED I ED+VVT++ GYVKR Sbjct: 478 LASPERQRQIISEELAAIVDKFGEDRRSALVPFDGDMSIEDLIAEEDIVVTITRGGYVKR 537 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 538 TKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDVG 597 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + +++ Y+V TK G V++ L D+ Sbjct: 598 RDARGQHVANLLAFQPDESIAQILAIRDYDAA---PYLVLGTKGGLVKKTPLKDYDSPRS 654 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L S DE++ E + ++D+LL +K Q +RF + ++R GR + G Sbjct: 655 GGVIAINLRETPDGSDDELIGAELVSADDDLLLISKKAQSIRFTATDESLRPM-GRATSG 713 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 714 VKGMSFREGDELLSMNVV 731 Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 15/163 (9%) Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQF 799 A DE + QR++IS + I + +G++S ++L +E Sbjct: 469 AKIDEYNAILASPERQRQIISEELAAIVDKFGEDRRSALVPFDGDMS---IEDLIAEEDI 525 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T++ G+ KRT + D+R R GKG+R T K+ E + F + ++ ++K Sbjct: 526 VVTITRGGYVKRTKTDDYRSQKRGGKGVRGT---KLKEDDIVDHFFVSTTHHWLLFFTNK 582 Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 G + R E+ R +G + + DE + + IR+ Sbjct: 583 GRVYRAKAYELPDVGRDARGQHVANLLAFQPDESIAQILAIRD 625 >gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37] gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 836 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 335/885 (37%), Positives = 512/885 (57%), Gaps = 88/885 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G G+ ++ + K A Sbjct: 20 VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHDRPFKKSA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+RYTE RL Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRYTEARL 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A LL D+ KDTVDF NYDG +EP VL A +PN+L NG GIAVGM+T+IP+HNL Sbjct: 140 SKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E++ G + +IDNP L+ +I+GPDFPTGA I+ GI++ + TG+G++VIR Sbjct: 200 SELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVE 259 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ R +VVTEIPY VNK ++EKI ELV+ + I IAD+RDES R+G R+VIE+K Sbjct: 260 IEQLQ-TRSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGIRLVIEVK 318 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R +V+LNQL++ T LQ F VNM+AL P + L+ ++ + +V+VR+TK+ Sbjct: 319 RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDVLVRKTKF 378 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 +LNK ++R H+L GL IA N+DEVV II+ S N + A L + Sbjct: 379 VLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK--------------- 423 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L E+Q +A+L++RL L+ L + ++ E L I+ C +L+ + Sbjct: 424 -----------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQK 472 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 L IIK+EL + D+ RR+ I+ + +++DE I E++V+T+S GY+KR+ + Sbjct: 473 LQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGYLKRIGVD 532 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 Y Q RGG G G+ +D ++ L + STH+ +LFF+ G VY+ + ++P G + Sbjct: 533 AYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTNK 592 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 G +N++ + + ERI +++ +++++ Y F TK+G V+R L++FI I +GK Sbjct: 593 GIPAVNLIKIEKDERICSLLSV----NNYDDGYFFFCTKNGIVKRTSLNEFINILSNGKR 648 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ D D + SV ++I + + G VRF + +RV + R + GV GISL KG+ Sbjct: 649 AISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGISLNKGEF 707 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V N S N S Sbjct: 708 V-----------------------------------------NGLSTSSNGS-------- 718 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +L+V + G GK TS +R++ R+ KG++ V+ + G +V V N+ ++ Sbjct: 719 ----LLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVT--DRTGPVVTTTTVFGNEDLL 772 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++S G ++R + E+ + T GV + +ER+ V +E Sbjct: 773 MISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKE 817 >gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 812 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 350/886 (39%), Positives = 512/886 (57%), Gaps = 91/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I +E++ SYL YA++VI+GRA+PD +DGLKPV RRIL+ MM++G+ N+ Y K A Sbjct: 10 VLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKSA 69 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GE MGKYHPHG+AAIYDA+ RMAQD+S+R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 70 RIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 129 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ +DTVD+ PN+D + QEP+VL + PN+LVNG GIAVGMATNIP HNL Sbjct: 130 SPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHNL 189 Query: 196 GEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EVVD +ID D++L ++E++ GPDFPTG I GR GI NAY TGRG IV+RG Sbjct: 190 SEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTITGREGIINAYRTGRGKIVLRGRV 249 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ + ++VTEIPY VNK ++E IA V+E + IADLRDESDR G RVVIEL Sbjct: 250 SIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVIEL 309 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 +R A ++L QLY T LQ+ F V +AL P LI +LK F+ R +VV RRT Sbjct: 310 QRDADPHLVLKQLYSRTPLQTTFGVINLALVDGVPRELGLIELLKIFLDHRRDVVRRRTN 369 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +RAH++ GL A+ +DE++ +I+ S + + AR + L+ Sbjct: 370 YRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEAR----------------VGLM 413 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 D+ +T E+Q +AIL++RL RLT L R + EL L +I+ IL + Sbjct: 414 DNFGFT----------ELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEMYHSILENP 463 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 S L ++K+EL +K + R+T IV+ L+++ D++ I ED+VV +S GY++R L Sbjct: 464 SVLDSVVKEELTELKRQYGDARKTEIVDELVEVADDELIPEEDIVVVLSKDGYLRRASLG 523 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-A 613 Y Q RGGKG G+ +D D V +TH + F+S G V+ K + LP P+ Sbjct: 524 DYHLQGRGGKGIKGLKQKD-DEVEMFAATTTHHDIFLFTSKGRVFAIKGYLLP--EPKNG 580 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +GK + + +L + ER+ I ++++ +V FAT+ G +R +S+ + R+G+ Sbjct: 581 KGKHVSSFFTLEENERVVAI----KEDTMHGARFVFFATERGIAKRLDVSELANLTRAGR 636 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + LD D I V + E+++L + GQ +R R GR + GVR I L++ D Sbjct: 637 RVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPM-GRQARGVRAIRLSESD 695 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++ C+ L Sbjct: 696 VLVG----------------------------------------------------CEPL 703 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 + + IL +SEKG GKRTS +F + +R G G+RA +S + G+LV + V ++D++ Sbjct: 704 Q-EGMAILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLS--SRTGSLVGAWSVTEDDEV 760 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++V+ KG + R+ V + + SR G ++ + + V + +R+ Sbjct: 761 MIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRD 806 >gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group] gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group] Length = 872 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 342/898 (38%), Positives = 509/898 (56%), Gaps = 116/898 (12%) Query: 30 LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89 + YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + KCAR+ GEV+GK+HPHG Sbjct: 1 MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60 Query: 90 NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD----- 144 ++A+Y+ L RMAQD+S+R L++G GNFGS+D DPPAA RYTECRL F LD Sbjct: 61 DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFLDIDAIF 120 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 +G+ VDF PN+D S +EP +L AR P++L+NG GIAVGMATNIP HNLGE+VD Sbjct: 121 IIGQ--VDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSV 178 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK--TSGD 262 +I+NP+ L L+E + GPDFPTG I+G GI AY TGRG +V+RG + IE Sbjct: 179 MIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVMRGKTDIETIDVKSK 238 Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322 R I++ E+PYQ NK+ ++E+IAELV EK + I+D+RDESDR G RVVIELKRGA + Sbjct: 239 RSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAI 298 Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382 +LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR V+ RR ++ L++A + Sbjct: 299 VLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSVIERRARFKLSQALE 358 Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442 R H++ G+ I + NLD V++IIR + N AR L++ Sbjct: 359 RKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE---------------------- 396 Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS------- 495 LS+ Q A+L++ L +LT L R +E SL EI + ++LS++ Sbjct: 397 ----FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLV 452 Query: 496 ---------------------RLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCI 533 L +I QE +K++ TPRR+ I + +++D D I Sbjct: 453 DGLDYLRAEINVVIRELKLMWSLFKLILQEATDLKNKFATPRRSFIEDSASTEVDDLDII 512 Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593 E+M++ +S GYVKR+ + + Q RG G+S MR D +D + TH VL+FS Sbjct: 513 PNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFS 572 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVF 650 G VY + +++P + A G L+ +LSL+ GERIT+I+P F ED+ Y+V Sbjct: 573 DKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGEDQ------YLVM 626 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710 T +G +++ L+ F I SG I+++L DE+ V C ++ + L ++ G + Sbjct: 627 LTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTC 686 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 + +R GR + GV + L +GD++ SM I+ Sbjct: 687 NKLRAL-GRKTRGVLAMKLKEGDKMASMDII----------------------------- 716 Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 + N+ E + L ++L +++ G GKR FR N + G++ Sbjct: 717 --------PATSHNMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGY 768 Query: 831 DVSKINEIGALVAV-FPVND----NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 + + A+ V F + D ++Q++LVS GT+ R+ V +I I SR+ +GV++ Sbjct: 769 KLPPDCSLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILM 826 >gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810] gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810] Length = 943 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 351/903 (38%), Positives = 507/903 (56%), Gaps = 105/903 (11%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 DE E IT + + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M G + Sbjct: 63 DESEVDRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPD 122 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + + KCA++ GEVMG YHPHG++AIYDA+ R+ Q WS+R LI GQGNFGS D AA Sbjct: 123 RSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAAAP 182 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTEC++ A L+ D+ +DTVD + NYD + EP VL AR+PN+LVNG GIAVGMAT Sbjct: 183 RYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMAT 242 Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 NIP HNL EV D ++ N P++ L+A ++ I+GPDFP+GA I+G +GI++AY T Sbjct: 243 NIPPHNLREVADAVQWLLKNHEATKPEL-LEACLQRIKGPDFPSGATIVGTSGIEDAYRT 301 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI R V E+ +G R +VVTE+PYQVN + KIAE+V+ +I IAD+ DE Sbjct: 302 GRGSITQRAVVSTEEING-RMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDET 360 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 S R G R+VI LKR A A V+LN LY++T LQ FS NM+AL P ++ ++ + Sbjct: 361 SGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREWT 420 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRTK+ L KA ++ H+ G A+ LDEV+ +IR SP+ + AR LM Sbjct: 421 KHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM---- 476 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 DL++ + E+Q AIL ++L RL L R I E + L Sbjct: 477 ------DLLE----------------IDEIQANAILAMQLRRLAALERQKIIEEHDRLQA 514 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+E IL+ R I+ +EL + D RRT I+ DME ED I EDMVVT+ Sbjct: 515 LIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVTI 574 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 + GYVKR YRAQ+RGGKG G +R++D V F +TH +LFF++ G VY+ K Sbjct: 575 TRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAK 634 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + LP A+G+ + N+++ E I +++ +S + ++V AT+ G V++ + Sbjct: 635 GYELPEAPRDAKGQHVANLMAFQPDENIASVLAI---DSYEDAQHLVLATESGLVKKTPM 691 Query: 663 SDFIQINRSGKIAMKL--------DSRDEILSVETCTQENDILLTTKLGQCVRFPI--SA 712 F G IA+ L D ++S +++ILL ++ GQ VRFP Sbjct: 692 PAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDGT 751 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 +R GR + GV G+ D +++M ++ Sbjct: 752 LRP-TGRATSGVTGMKFRHQDTLLAMDVI------------------------------- 779 Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832 + DS F++TV++ GF KRT+ ++R+ R G GIR V Sbjct: 780 ---RPDS-------------------FVITVTDGGFAKRTTVDEYRLQGRGGLGIR---V 814 Query: 833 SKI-NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +K+ ++ G LV V + D++++V ++G ++R V E+ R T GVV K +R+ Sbjct: 815 AKLPDDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRI 874 Query: 892 VSV 894 + V Sbjct: 875 LLV 877 >gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302] gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302] Length = 586 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 297/597 (49%), Positives = 416/597 (69%), Gaps = 27/597 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EPVVL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE+T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVV R Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S E A+ ELM + Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 LSE Q++AIL++RL RLTGL RD I++E + L I + DIL Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R+ IIK+EL VK + PRRT ++ G +L +EDED I D+++T+S+ GY+KR Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 + + AQ+RGG+G G ++D+DFV +L STH +LFF++ G VY+ K + +P Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIP 572 >gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] Length = 857 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 324/738 (43%), Positives = 461/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 13 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 73 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 133 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++N + LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 193 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 253 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS F NM+AL P +L ++ +V + EV+V Sbjct: 312 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIV 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM DL Sbjct: 372 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 422 LE----------------IDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ +EL ++ ++ R+T+++ DM ED I ED+VVTV+ GY+KR Sbjct: 466 LASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 526 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I + E+ Y+V ATK G V++ L D+ Sbjct: 586 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRS 642 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L S DE++ E + E+D+LL +K Q +RF S +R GR + G Sbjct: 643 GGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSG 701 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 702 VKGMSFREGDELLSMNVV 719 >gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] Length = 867 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/909 (38%), Positives = 519/909 (57%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 18 IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSKSS 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 78 RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG GIAVGMAT IP HNL Sbjct: 138 APLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ G +++PD L+AL+++I GPDFPTGA ILG GI++AY TGRGSI R Sbjct: 198 RELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ I IAD+RDE S R G R+ Sbjct: 258 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ TSLQ FS NM+AL P ++ G ++ ++ + +V+V Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWINHQIDVIV 376 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +R H+L G A+ LDEV+ +IR SP + AR L Sbjct: 377 RRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------AGL 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I+L+D + +Q AIL L+L RL L R I +E L + + DI Sbjct: 424 IELLD-------------VDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + D+ RRTRI+ +M ED I ED+VVT++ G+ KR Sbjct: 471 LAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + +P G Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGG 590 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E I ++ E + ++V ATK G V++ LS + Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---FLVLATKRGLVKKTPLSLYNSPRS 647 Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 G IA+ L D + DE++S +T + D++L ++ GQ VRF + ++ + GR++ GV Sbjct: 648 GGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGV 707 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ +GD +E+ S+ Sbjct: 708 RGMKF-RGD------------------------------------DELLSM--------- 721 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E+ +L V+E G+ KRT ++ +R G+R + ++E G LV Sbjct: 722 -------EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKL--VDERGGLVGA 772 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901 V ++ ++++++ G L++V +++R +R T GV+ + +R++++ R +S + Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSGDED 832 Query: 902 IVDEAESTE 910 DE+E+TE Sbjct: 833 ETDESENTE 841 >gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] Length = 867 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 352/909 (38%), Positives = 519/909 (57%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 18 IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSKSS 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 78 RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG GIAVGMAT IP HNL Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ G +++PD L+AL+++I GPDFPTGA ILG GI++AY TGRGSI R Sbjct: 198 RELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R+ +VVTE+PYQVN + +KIA+LVR+ I IAD+RDE S R G R+ Sbjct: 258 AVVNVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ TSLQ FS NM+AL P ++ G ++ ++ + +V+V Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWINHQIDVIV 376 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +R H+L G A+ LDEV+ +IR SP + AR LM+ Sbjct: 377 RRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLME----------- 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + +Q AIL L+L RL L R I +E L + + DI Sbjct: 426 --LLD-------------VDAIQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R II EL + D+ RRTRI+ +M ED I ED+VVT++ G+ KR Sbjct: 471 LAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + +P G Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGG 590 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E I ++ E + ++V +TK G V++ LS + Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---FLVLSTKRGLVKKTPLSLYNSPRS 647 Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 G IA+ L D + DE++S +T + D++L ++ GQ VRF + ++ + GR++ GV Sbjct: 648 GGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRFTATEDQLRSMGRSTSGV 707 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ +GD +E+ S+ Sbjct: 708 RGMKF-RGD------------------------------------DELLSM--------- 721 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 E+ +L V+E G+ KRT ++ +R G+R + ++E G LV Sbjct: 722 -------EVPRDNTDLLIVTESGYAKRTPVDEYPTKSRGTLGVRVGKL--VDERGDLVGA 772 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901 V ++ ++++++ G L++V +++R +R T GV+ + +R++++ R +S + Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDEGDRIIAITRNPDSGDED 832 Query: 902 IVDEAESTE 910 DE+E+TE Sbjct: 833 ETDESENTE 841 >gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] Length = 834 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 344/881 (39%), Positives = 503/881 (57%), Gaps = 88/881 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+PTH Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM I+GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312 IE+T DRE IVV E+PY V K + EKIAELV++ +I +AD+RDE S+R G R++I Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L++ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR LM R Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL + ++ RR+ I+ D E +ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKKIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P + Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK++ IL+L E+IT+ E + + ++ TK G +++ +L + Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ L++ DE+++V +D ++TT G +R IR GR + GV+GI+L Sbjct: 656 RGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKM-GRAAAGVKGIALD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+ IC V GN Sbjct: 715 ------------------DDDIC---------------------------VSGNAIH--- 726 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 K + ++ ++E G GKR SS F + R GKG + N+ G +V+V V D Sbjct: 727 -----KGESLIVITENGIGKRLSSKQFNVKGRGGKG--QIYIKPDNKTGKVVSVKTVGDK 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 D+I++V+ I++ + I R KGV I + + RV Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARV 820 >gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] Length = 898 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 329/904 (36%), Positives = 524/904 (57%), Gaps = 89/904 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E+ G+ + M++S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ Sbjct: 65 ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR LI+G GNFGS+DGD AA R Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A ++D + K+TVDF NYDG+ +EP VL +R+PN+LV+G GIAVGMATN Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNLGE++D A+ NP+I +D LME + PDFPTGA I + G+ AY TGRGSI Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSIT 304 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R ++I++ + + +I++TEIPY+V K ++EKIA+ ++ KRI I+D RDES+R G R Sbjct: 305 MRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIR 364 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVI++K+ A +VILN LY+ T LQ+ FS NM+AL +P+ L L+ ++ + +V Sbjct: 365 VVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVT 424 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L K RAH+L GL I V N+D V+ II+ S A+ +L Q Sbjct: 425 RRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQ---------- 474 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 T LSE+Q +AI+++RL RLTGL + + +EL+ + I E Sbjct: 475 ----------------TFSLSEIQAKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRA 518 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 ILSS +L+ +I +EL VK+ RR+ I ++ + +ED I ++++V+T+S Y+ Sbjct: 519 ILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDVMSSINNEDLIPQKEIVITLSSNNYI 578 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR QRRGG G S V +D + D+ + +TH +L F+ +Y+ + +P Sbjct: 579 KRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPS 638 Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 G+ Q++G ++NI+ ++ + E++ I+ + E S + ++ T+ G +++ L ++ Sbjct: 639 GTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYEESQS---LITVTERGVIKKTNLKEYEL 695 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I ++GK A+ L D ++ V Q+ +I + + RF ++ +R GR + GV GI Sbjct: 696 IRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAASNSRINRFNVADVREM-GRVARGVGGI 754 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L+ D+V+S++ SS +G Sbjct: 755 RLSDDDKVVSVS---------------------------------------SSKDG---- 771 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +I ++ KG+GK + +R + R+ KG+ + K ++ AV V Sbjct: 772 ----------AYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLNEDKAGKLVYAAAVHGV 821 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRESEIVDEA 906 D +I+++ G IR+ + +I + R KGV I + + +++V V +I + + D Sbjct: 822 ED---LIIMTQSGIAIRISLRDINVIGRNAKGVKIINLKGRSDQIVGVAKIYDEDATDRE 878 Query: 907 ESTE 910 + E Sbjct: 879 LTKE 882 >gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] Length = 864 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 320/738 (43%), Positives = 461/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL +R+PN+L+NG GIAVGMATNIP HNL Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ L+AL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 260 AVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +V + EVVV Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVVV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM------------ 426 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 427 --------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ EL ++ ++ R+T++V DM ED I ED+VVTV+ GYVKR Sbjct: 473 LASPVRQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIEDLIAEEDIVVTVTRGGYVKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + +++ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRDYDAA---PYLVLATKGGLVKKTPLKDYDSPRS 649 Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L R DE++ E + ++D+LL +K Q +RF + ++R GR + G Sbjct: 650 GGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSIRFTATDESLRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD ++SM +V Sbjct: 709 VKGMSFREGDALLSMNVV 726 Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 68/148 (45%), Gaps = 15/148 (10%) Query: 761 QRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 QR ++S + I D +G++S ++L +E ++TV+ G+ KRT + Sbjct: 479 QRGIVSAELAAIVEKYGDDRQTKLVPYDGDMS---IEDLIAEEDIVVTVTRGGYVKRTKT 535 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 D+R R GKG+R +K+ E + F + ++ ++KG + R E+ A Sbjct: 536 DDYRAQKRGGKGVRG---AKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 875 RATKG---VVIFSTAKDERVVSVERIRE 899 R +G + + DE + + IR+ Sbjct: 593 RDARGQHVANLLAFQPDEAIAEILAIRD 620 >gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 814 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 343/876 (39%), Positives = 506/876 (57%), Gaps = 89/876 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + +E++ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+ N+ Y K AR+ GE Sbjct: 15 LVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARVVGE 74 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 MGKYHPHG++AIYD + R+AQ++S+R L++GQGNFGS+DGD AA RYTE RLQ+ Sbjct: 75 TMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEARLQELGE 134 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ +DTV++ PN+D S +EP+VL ++ PN+LVNG GIAVGMATN+P HNLGEVVD Sbjct: 135 LMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLGEVVD 194 Query: 201 GCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259 +I+ D D LM + GPDFPTG VILG+ GI +AY TGRG +V++G+ H+E+ Sbjct: 195 AICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRGRLVVQGLVHVEEG 254 Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319 + +V+TEIPY VNK M+E IA V+ K I + D+RDESDR+G RVV+E+ R Sbjct: 255 KRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLEVSRDVD 314 Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 D+++ QLYR + LQ+ F V +AL +P +L +L F+ R VV RRT++ L K Sbjct: 315 PDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRRTVVRRRTEFRLKK 374 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 A RAH+L GL A+ +D V+ +IR S N A+ L+ Sbjct: 375 AEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLV--------------------- 413 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 + SE+Q +AIL+++L RLTGL RD + +E L +I+ IL S L G Sbjct: 414 -----AELDFSEIQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDG 468 Query: 500 IIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558 +I +EL+++K + RRT+IV+ + D DED I RED+VV +S GY++RVPL Y Sbjct: 469 VIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSL 528 Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618 Q +GGKGR G +R+ED V+ + + +TH + F++ G V+ K + + S +GK + Sbjct: 529 QAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIIS-ESRTGKGKLI 587 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 +SL ER+ ++ ES ++ F T+ G +R S+ + R+G+ + L Sbjct: 588 GKYISLENDERVVSMKTRRGQESG----FLFFLTRRGIAKRLPSSELDNLTRAGRRVVTL 643 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 D DEI + + +D+LL + +GQ +R R GR++ GV+ + L GD++IS Sbjct: 644 DEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPM-GRSARGVKAMRLKDGDRIISG 702 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +V + RR I Sbjct: 703 EVV-----------------TEDRRPI--------------------------------- 712 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 VSE G GKRT+ DF + +R G G++ ++ + G L A V+++D+II+++ Sbjct: 713 ---LVSETGIGKRTNFEDFTVHHRGGGGMKVMSIN--SRTGLLAAATSVSEDDEIIVMTA 767 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 KG +IRV EIR+ R G ++ + VV + Sbjct: 768 KGRMIRVAAKEIRVLGRTAAGSIVVRLDGGDSVVDL 803 Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK--EKV 603 G KR+P S R G R V + + D + + S +L S++G + E Sbjct: 620 GIAKRLPSSELDNLTRAG--RRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDE 677 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +R P+G ARG + + L G+RI + ED + ++ G +R Sbjct: 678 FR-PMGR-SARG---VKAMRLKDGDRIISGEVVTEDRRP------ILVSETGIGKRTNFE 726 Query: 664 DFIQINRSGK--IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720 DF +R G M ++SR +L+ T E+D I++ T G+ +R IRV GR Sbjct: 727 DFTVHHRGGGGMKVMSINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVL-GRT 785 Query: 721 SVGVRGISLAKGDQVISMAIV 741 + G + L GD V+ +++V Sbjct: 786 AAGSIVVRLDGGDSVVDLSVV 806 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 31/258 (12%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 V K+G+ RR K+ ++R G+ D DE L +E+ +++ ++ G R Sbjct: 475 VALKGKYGDDRRTKI-----VDRVGQ-----DCSDEDL----IPREDIVVMLSRDGYLRR 520 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY----DERICYMK-HMSAQR 762 P+ + A + G RG L + D+V M + D + R+ +K ++ ++ Sbjct: 521 VPLEDYSLQA-KGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISES 579 Query: 763 RLISGD-TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821 R G + SL+ND V ++ R QE F+ ++ +G KR S + Sbjct: 580 RTGKGKLIGKYISLENDERVV-SMKTRRGQE----SGFLFFLTRRGIAKRLPSSELDNLT 634 Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881 R+G+ V ++E + + P + D ++LVS G +RV +E R R+ +GV Sbjct: 635 RAGR-----RVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPMGRSARGVK 689 Query: 882 IFSTAKDERVVSVERIRE 899 +R++S E + E Sbjct: 690 AMRLKDGDRIISGEVVTE 707 >gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] Length = 867 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/909 (39%), Positives = 515/909 (56%), Gaps = 99/909 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + + K + Sbjct: 18 IRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPSSSFSKSS 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 78 RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG GIAVGMAT IP HNL Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ G + +P+ L+AL+ II GPDFPTGA ILGR GI++AY TGRGSI R Sbjct: 198 RELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATILGRKGIEDAYRTGRGSITQR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+PYQVN + +KIA+LVR+ I IAD+RDE S R G R+ Sbjct: 258 AVVSVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTGQRL 316 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ TSLQ FS NM+AL P ++ G ++ ++ + +V+V Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLSIDGFIRHWITHQIDVIV 376 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +R H+L G A+ LDEV+ +IR SP + AR L Sbjct: 377 RRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------VGL 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+D + VQ AIL L+L RL L R I +E L + + DI Sbjct: 424 IDLLD-------------VDAVQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDI 470 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L++ R II EL + D+ RRTRI+ +M ED I ED+VVT++ G+ KR Sbjct: 471 LATPERQRAIISAELSEIVDKFGDERRTRILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +RD+D V F+ +TH +LFF++LG VY+ K + +P G Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGG 590 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ E I ++ E + Y+V ATK G V++ LS + Sbjct: 591 RDAKGQHVANLLAFQPDEHIAQVLAIRTYEDAD---YLVLATKRGLVKKTPLSLYNSPRS 647 Query: 671 SGKIAMKL----DSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 G IA+ L D + DE++S + + D++L ++ GQ VRF + ++ + GR++ GV Sbjct: 648 GGIIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRFTATDEQLRSMGRSTSGV 707 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ D+++SM V H D Sbjct: 708 RGMKFRGDDELLSME-VPHEGTD------------------------------------- 729 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L V+E G+ KRT ++ +R G+R + ++E G LV Sbjct: 730 ---------------LLIVTESGYAKRTPVEEYPTKSRGTLGVRVGKL--VDERGGLVGA 772 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES---E 901 V ++ ++++++ G L++V +++R +R T GV+ +R++++ R +S E Sbjct: 773 LVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPDDGDRIIAITRNSDSAGEE 832 Query: 902 IVDEAESTE 910 D+A + E Sbjct: 833 DEDDASAAE 841 >gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672] gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] Length = 864 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 322/738 (43%), Positives = 463/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G + + KCA Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++ GNFGS DP AA RYTEC++ Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF+ NYDG QEP VL AR+PN+L+NG GIAVGMATNIP H L Sbjct: 140 APLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHTL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NP+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 260 AVVAVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +VA + EV+V Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR ++DL Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIAR----------GGLRDL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + IDD +Q AILE++L RL L R I E + L +I E I Sbjct: 429 L-AIDD---------------IQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ +EL ++ ++ R+T+++ DM ED I ED+VVTV+ GY+KR Sbjct: 473 LASPVRQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPEAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I + E+ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKSGLVKKTPLKDYDSPRS 649 Query: 671 SGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L R DE++ E + ++D+LL +K Q +RF + +R GR + G Sbjct: 650 GGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 709 VKGMSFREGDELLSMNVV 726 >gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1] gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1] Length = 857 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 324/742 (43%), Positives = 460/742 (61%), Gaps = 51/742 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 4 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ GNFGS DP AA RYTEC+L Sbjct: 64 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +L D+ ++TVDF NYDG QEP VL AR+PN+LVNG GIAVGMATNIP Sbjct: 124 MPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP--- 180 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 +V G +++PD DAL+E I+GPDFP+GA+++GR GI+ AY TGRGSI +R Sbjct: 181 -QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVVGRKGIEEAYRTGRGSITMR 239 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 240 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 298 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ+ F NM+AL P ++ ++ +V + EV+V Sbjct: 299 VIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVIV 358 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 359 RRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM------------ 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 407 --------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNEI 452 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S SR I+ +EL ++ ++ RR+++V DM ED I ED+VVT++H GYVKR Sbjct: 453 LRSESRQRSIVSEELAAIVEKFGDDRRSKLVPFDGDMSMEDLIAEEDIVVTITHGGYVKR 512 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 513 TKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDAG 572 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E+I I+ + E++ Y++ ATK G V++ L D+ Sbjct: 573 RDARGQHVANLLAFQPDEKIAQILAIRDYEAA---PYLILATKGGLVKKTALKDYDSPRS 629 Query: 671 SGKIAMKL---------DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719 G IA+ L + DE++ E + E+D+LL +K Q +RF + A+R GR Sbjct: 630 GGVIAINLRETGADGADGAADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPM-GR 688 Query: 720 NSVGVRGISLAKGDQVISMAIV 741 + GV+G+S +GD+++SM++V Sbjct: 689 ATSGVKGMSFREGDELLSMSVV 710 >gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] Length = 806 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 331/883 (37%), Positives = 518/883 (58%), Gaps = 93/883 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV NK + K ARI GE Sbjct: 7 IEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGE 66 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+AAIYD + RMAQDW++R LI+GQGNFGS+D DPPAA RYTE RL K A Sbjct: 67 VMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIAE 126 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 LL+D+ K+TV+ N+DGS +EP VL +++PN+L NG GIAVGM TNIP HN+ E+V+ Sbjct: 127 ELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELVN 186 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A+I NP+I ++ LM I GPDFPTG I+G++GI+ Y TG+GS IRG H+E+ Sbjct: 187 GLIALIKNPEISIEELMNFIPGPDFPTGGEIIGKSGIREMYTTGKGSFTIRGKVHVEEKK 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 ++ IV+TEIP+ ++KA +++KI E EK + I D+RDESD++G R+VIE+ + Sbjct: 247 -KKKNIVITEIPFNISKADLIKKIVEYA-EKSSLPIKDIRDESDKEGLRIVIEIPNDTNE 304 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379 ++I+N LY++T LQS F ++ ++ KP L ++ AFV R EVV RR +Y + Sbjct: 305 EIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYKQ 364 Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439 +AH+L GL A ++D ++ +IR S + +A I +LID+ + Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSA-------------IHELIDMFN---- 407 Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 +E Q +AI++LRL RLT L + ++ N L ++K +++ + ++ Sbjct: 408 ---------FTETQAKAIVDLRLGRLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVYE 458 Query: 500 IIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 I +EL ++K E R++ I+ E ++ + + I +++V++++ GY+K + L + Sbjct: 459 KIIEELEAIKSEYGDSRKSIILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDTF 518 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 + QRRGGKG +G + D+D + ++ H LFF+S G VY +++ S +RG+ Sbjct: 519 KTQRRGGKGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGR 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 + L++ Q E+I T++ E + F TK+G +R L +F IN G A+ Sbjct: 579 QIAKYLNIGQDEKILTMLSVDNFEGE-----LFFVTKNGKAKRTSLKEFENINSRGMKAI 633 Query: 677 KLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 D D ++SV+ + IL+ TK G C+RFPIS +R GRN++GV GI L+ D V Sbjct: 634 TFDGDDLLVSVQKIDNPDQTILIATKNGLCIRFPISEVRTM-GRNAMGVIGIRLSNDDAV 692 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 +S ++ L +D Sbjct: 693 VSSSL----------------------------------LMDD----------------- 701 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 E ++LTV+ KG+GK T + +RI R G GI+ ++S I++ G +V V V N+ +++ Sbjct: 702 -EHYLLTVTSKGYGKLTETSQYRIQKRGGLGIK--NISDISKAGHIVGVTHVLGNENMMI 758 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 + G +++ ++ +R R TKGV + + ++ + + IR Sbjct: 759 FTKNGMTLKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIR 801 >gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] Length = 877 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 334/894 (37%), Positives = 527/894 (58%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL M ++G+ + Sbjct: 67 ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR LI+G GNFGS+DGD AA R Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G GIAVGMAT Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + NPDI + L + + PDFPTGA ILG +GI+ AY TGRG+ V Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE S + +I+V EIPY+V K ++EK+ +LVR+K+I + D+RDE++R+G R Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV ++K+G S ++ILNQLY+ T LQ +++NM+AL P+ L IL ++ +EEVV Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R ++ L KA++R ++L+G+ IAV N+DEV++IIR S + A+ L QR Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E QT+AI+++RL RLT L + + E+ L EI+ Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 I++S +L+ +I + + RRT IV G + + DED I + +V+T++ Y+ Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR Q RGG G S +D + ++ + STH+ +L +S +++ + ++P Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN++ + + E I +++ E+ +NLY+V +K G +++ LS + +I Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIISLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +++G IA+ L DE+L+ T+E++I++ G+ VRF R + R S+GV+GI+ Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + + V+ + S S+V Sbjct: 759 LGENEVVVGAS----------------------------------STDQGSTV------- 777 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 F+L ++G+GK+T ++R + R GKG+ K + G L + V Sbjct: 778 ----------FVL--GQEGYGKKTHIDEYRKTARGGKGVITL---KTEKAGNLAFISCVK 822 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRE 899 +++I++++ +G +IR + + SR TKGV + + + + SV E+I E Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEKIYE 876 >gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054] Length = 867 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/910 (38%), Positives = 516/910 (56%), Gaps = 105/910 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + EMQ SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M G K Y KCAR+ Sbjct: 29 IELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCARVV 88 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G+VMG YHPHG+ +IYD L R+AQ WS+R+ L++G GNFGS DP AA RYTEC++ Sbjct: 89 GDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFGSPGNDPAAAMRYTECKMMPL 148 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A ++ D+ ++TVDF NYDG QEP VL +R PN+LVNG GIAVGMATNIP HNL EV Sbjct: 149 AMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNGATGIAVGMATNIPPHNLREV 208 Query: 199 VDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 G + +++P L+AL+E I+GPDFPTGA+I+GR GI++AY TGRGSI +R V Sbjct: 209 ASGALWALEHPGASNEELLEALVERIKGPDFPTGALIVGRRGIEDAYRTGRGSITMRAVV 268 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIE 313 +E+ G R+ +V+TE+P+QVN + KIA+LV++ RI IAD+RDE S R G R+VI Sbjct: 269 EVEEIQG-RQCLVITELPFQVNPDNLALKIADLVKDGRIAGIADVRDESSSRTGQRLVIV 327 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKR A A V+LN LY++T LQ+ F NM+AL P +L ++ +VA + EV+VRRT Sbjct: 328 LKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVAHQIEVIVRRT 387 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + L KA +RAH+L L A+ +D V+ +IR S + + AR LM+ L+D Sbjct: 388 TFRLRKAEERAHILRALLKALDQIDAVIALIRASESADAARTGLMR----------LLD- 436 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 + E+Q AILE++L RL L I +E + L +I E IL+S Sbjct: 437 ---------------IDELQANAILEMQLRRLAALESARILSEHDELQAKINEYNAILAS 481 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +R I+ +EL ++ ++ RR+ ++ D+ ED I ED+VVT++ GYVKR Sbjct: 482 PARQREIVSEELTAIVEKYGDERRSTLIPSDGDLSIEDLIAEEDIVVTITRGGYVKRTRS 541 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +YR+Q+RGGKG G ++ +D V F+ +TH +LFF++ G VY+ K + LP A Sbjct: 542 DLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVYRAKGYELPDAGRDA 601 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG+ + N+L+ E IT +M E + Y+V AT+ G V++ L D+ G Sbjct: 602 RGQHVANLLAFQPEEHITQVMAVRTYE---DKPYLVLATRGGLVKKTPLKDYDSPRSGGL 658 Query: 674 IAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726 IA+ L DE++ E + ++D+LL ++ Q +RF + A+R + R + GV+G Sbjct: 659 IAINLRQDEEGQGDELIGAELVSADDDLLLISRKAQSIRFKATDEALRPMS-RATSGVKG 717 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 ++ + D+++SM +V T T+ + ++ Sbjct: 718 MAFREDDELLSMNVVRPG------------------------TYVFTATDGGYAKRTSVD 753 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 E R Q GFG I+A + + G+LV Sbjct: 754 EYRVQ------------GRGGFG-----------------IKAAKI--VEGRGSLVGALV 782 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES------ 900 V ++D+I+ ++ G +IR V+E+R R T GV + + K + VV + R E+ Sbjct: 783 VEESDEIMAITLSGGVIRTRVSEVRETGRDTMGVQLINLGKRDAVVGMARNAEADEEEGA 842 Query: 901 -EIVDEAEST 909 + VDE ES Sbjct: 843 DDTVDETESA 852 >gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 858 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/908 (39%), Positives = 516/908 (56%), Gaps = 100/908 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M G +K + KCA Sbjct: 17 IDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFSKCA 76 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG++HPHG++AIYDAL R+ Q WSLR L GQGNFGS D AA RYTE ++ Sbjct: 77 RVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETKM 136 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+ NYDG QEP VL +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 137 APLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 196 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + + +P+ L+ L++ I+GPDFPTGA ILG GI++ Y TGRGSI IR Sbjct: 197 REVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVKGIQDTYRTGRGSITIR 256 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V IE+ G R +VVTE+PYQVN + KIAELV++ R+ IAD+RDE S R G R+ Sbjct: 257 AVVSIEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTGQRL 315 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+A+ P L G + A+V + EV+V Sbjct: 316 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDNVPRTLALDGFITAWVDHQIEVIV 375 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L G A+ LDEV+ +IR S + AR L K L Sbjct: 376 RRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEAREGL----------KSL 425 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +++ D +Q AIL ++L RL L R I +E + + +I E I Sbjct: 426 LEVDD----------------IQADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAI 469 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L+ +R I+ +EL + D RRT I+ G DM ED I E+MV+TV+ GY+K Sbjct: 470 LADSARQRSIVSEELTEIVDRFGDDRRTEIMLGFDGDMSLEDLIPEEEMVITVTRGGYIK 529 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q RGGKG G +R ED V F+ +TH +LFF+ G VY+ K + + Sbjct: 530 RTRSDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEVQEA 589 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+L E I I+ + E + Y+V AT+ G +++ L ++ N Sbjct: 590 GRDAKGQHVANLLALQPDEEIAEILDIRDYEVAQ---YLVLATRDGLIKKTALREY-DTN 645 Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726 RSG IA+KL DE++S +++D+LL ++ G +RF + A+R GR++ GV G Sbjct: 646 RSGGIIAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPM-GRSTSGVIG 704 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 + D ++ ++V S EG Sbjct: 705 MHFRGDDSLLDASVV--------------------------------------SDEG--- 723 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 ++ V+E G+ KRT++ +R+ NR G GI+ +S ++ G LV Sbjct: 724 ------------YVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLS--DDRGDLVGALI 769 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV----ERIRESEI 902 V ++D++++V G ++R V E+ R T GVV A+ ++++++ ER +S+ Sbjct: 770 VEEDDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAETDKIIALAKNTERNLDSQE 829 Query: 903 VDEAESTE 910 D S E Sbjct: 830 TDADSSAE 837 >gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD] Length = 877 Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust. Identities = 334/894 (37%), Positives = 527/894 (58%), Gaps = 88/894 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E I I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL M ++G+ + Sbjct: 67 ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR LI+G GNFGS+DGD AA R Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G GIAVGMAT Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV++ + + NPDI + L + + PDFPTGA ILG +GI+ AY TGRG+ V Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE S + +I+V EIPY+V K ++EK+ +LVR+K+I + D+RDE++R+G R Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV ++K+G S ++ILNQLY+ T LQ +++NM+AL P+ L IL ++ +EEVV Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R ++ L KA++R ++L+G+ IAV N+DEV++IIR S + A+ L QR Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 L+E QT+AI+++RL RLT L + + E+ L EI+ Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548 I++S +L+ +I + + RRT IV G + + DED I + +V+T++ Y+ Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ L YR Q RGG G S +D + ++ + STH+ +L +S +++ + ++P Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S QA+G IN++ + + E I +++ E+ +NLY+V +K G +++ LS + +I Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIVSLLVTQENYED-DNLYLVTVSKLGIIKKTSLSLYKRI 699 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 +++G IA+ L DE+L+ T+E++I++ G+ VRF R + R S+GV+GI+ Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L + + V+ + S S+V Sbjct: 759 LGENEVVVGAS----------------------------------STDQGSTV------- 777 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 F+L ++G+GK+T ++R + R GKG+ K + G L + V Sbjct: 778 ----------FVL--GQEGYGKKTHIDEYRKTARGGKGVITL---KTEKAGNLAFISCVK 822 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV---ERIRE 899 +++I++++ +G +IR + + SR TKGV + + + + SV E+I E Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEKIYE 876 >gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Streptomyces coelicolor gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)] gi|1093585|prf||2104262E DNA gyrase Length = 864 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 323/738 (43%), Positives = 460/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+P +RDGLKPVHRR+L+ M G + + KCA Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++N + LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 200 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMR 259 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQ N + +KIA+LV++ ++ IAD+RDE S R G R+ Sbjct: 260 AVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRL 318 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS F NM+AL P +L ++ +V + EV+V Sbjct: 319 VIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIV 378 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM DL Sbjct: 379 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----------DL 428 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 ++ + E+Q AILE++L RL L R I E + L +I E +I Sbjct: 429 LE----------------IDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEI 472 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R GI+ +EL ++ ++ R+T+++ DM ED I ED+VVTV+ GY+KR Sbjct: 473 LASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKR 532 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YRAQ+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 533 TKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAG 592 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I + E+ Y+V ATK G V++ L D+ Sbjct: 593 RDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRS 649 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L S DE++ E + E+D+LL +K Q +RF S +R GR + G Sbjct: 650 GGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSG 708 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S +GD+++SM +V Sbjct: 709 VKGMSFREGDELLSMNVV 726 >gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 806 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 337/818 (41%), Positives = 476/818 (58%), Gaps = 104/818 (12%) Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R+ K AH LL DL K+TVD+ PNYDG+ P V+ R PN+LVNG GIAVGMAT Sbjct: 2 RYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMAT 61 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I Sbjct: 62 NIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRI 121 Query: 249 VIRGVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 +R S +E G R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ Sbjct: 122 YMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD 181 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIEL+RG +VILN LY T LQS+F +N+VAL +P L +L+AFV R Sbjct: 182 GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRR 241 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S Sbjct: 242 EVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSA 301 Query: 427 IKDLIDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 + ++++ D Y + +G +LS Q +AILELRL RLTGL + + E Sbjct: 302 VVEMVERAGADSCRPENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEY 360 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 + +I E + IL+S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ Sbjct: 361 QEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEE 420 Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597 VVT+SH GY K PL+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G Sbjct: 421 RVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGK 480 Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--------------------- 636 VY K + +P S ARG+ L+N+L L+ GE ITT++P Sbjct: 481 VYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELD 540 Query: 637 -PEDESSWNN--------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 E+ S ++ +T +G V++ L F + SG IA++LD Sbjct: 541 DAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEG 600 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 D ++S E +I+L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 601 DILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML-- 657 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 I EE Q IL Sbjct: 658 -------------------------------------------IPEEGSQ--------IL 666 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861 T SE+G+GKRT+ +F R G+G A ++ N G LV V D ++I+L+SD+GT Sbjct: 667 TASERGYGKRTAISEFPEYKRGGQGGIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGT 724 Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 L+R V E+ R T+GV + A DE++V +ER++E Sbjct: 725 LVRTRVGEVSSLGRNTQGVTLIKLASDEKLVGLERVQE 762 >gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor] gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor] Length = 845 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 316/745 (42%), Positives = 458/745 (61%), Gaps = 41/745 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + E +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+ + + KCA Sbjct: 96 ILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCA 155 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG+ A+Y++L RMAQD+S+R L++G GNFGSVD DPPAA RYTECRL Sbjct: 156 RVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYTECRL 215 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A L DL +TVDF PN+D S +EP +L AR P++L+NG GIAVGMATNIP HN Sbjct: 216 DSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHN 275 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VD +I NP+ L L+E + GPDFPTG ILG GI AY +GRG IV+RG + Sbjct: 276 LGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTILGNQGILEAYKSGRGRIVVRGKT 335 Query: 255 HIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 IE R I++ EIPYQ NKA +++KIAEL +K + I+D+RDESDR G RVVI Sbjct: 336 DIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTGMRVVI 395 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELKR A ++LN LYR+T+LQS FS NMVA+ +P+ L IL+AF+ FR V+ RR Sbjct: 396 ELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSVIERR 455 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +Y L++A +R H++ G+ I + NLD V+++IR + N A L++ Sbjct: 456 ARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKE------------ 503 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q A+L++ L RLT L R +E L EI + ++LS Sbjct: 504 --------------FDLSEKQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLS 549 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV-SHLGYVKR 550 S+ + +I+QE +K++ TPRR+ I + + +++D D I E+M++ + S GY KR Sbjct: 550 SKELIFQLIQQEAADLKNKFSTPRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGYAKR 609 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + + + Q RG G+S MR D +D + TH VL+FS G VY + +++P + Sbjct: 610 MNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECT 669 Query: 611 PQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 A G L+ +L L+ GERIT+I+P F ED+ +V T +G +++ L+ F Sbjct: 670 RTATGTPLVQLLPLSDGERITSIIPVSEFGEDQC------LVMLTVNGYIKKVPLNAFSS 723 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 I +G I+++L DE+ V C ++ + L ++ G+ + +R GRN+ GV + Sbjct: 724 IRSTGIISIQLVPGDELKWVRRCGNDDLVALASQKGRVIVNSCDKLRAL-GRNTRGVYAM 782 Query: 728 SLAKGDQVISMAIVLHADADYDERI 752 L +GD++ +M I+ E+I Sbjct: 783 KLKEGDKMAAMDIIPATAHKMPEKI 807 >gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] Length = 834 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 342/881 (38%), Positives = 502/881 (56%), Gaps = 88/881 (9%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ + A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+P H Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM ++GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312 +E+T DRE IVV E+PY V K + EKIA+LV++ +I +AD+RDE S+R G R++I Sbjct: 265 LEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L++ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR LM R Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL + ++ RR+ I+ D E +ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P S Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALS 598 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ++GK++ IL+L E+IT+ E + + ++ TK G +++ +L + Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 G +A+ L++ DE+++V +D ++TT G +R IR GR + GV+GISL Sbjct: 656 RGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKM-GRAAAGVKGISLD 714 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 D+ IC V GN Sbjct: 715 ------------------DDDIC---------------------------VSGNAIH--- 726 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 K + ++ ++E G GKR SS F + R GKG + N+ G +V+V V D Sbjct: 727 -----KGESLIVITENGIGKRLSSKQFNVKGRGGKG--QIYIKPDNKTGNVVSVKTVGDK 779 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 D+I++V+ I++ + I R KGV I + + RV Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARV 820 >gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] Length = 817 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/899 (39%), Positives = 509/899 (56%), Gaps = 102/899 (11%) Query: 11 EEEKG------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64 EE+KG + + + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM++G Sbjct: 2 EEKKGEPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELG 61 Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 + N Y K AR+ GE MGKYHPHG++AIYD + RMAQD+S+R L++GQGNFGS+DGDP Sbjct: 62 LRHNTAYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDP 121 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL + +L D+ +DTVD+ PN+D S QEP+ L A PN+L+NG GIAV Sbjct: 122 AAAMRYTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAV 181 Query: 185 GMATNIPTHNLGEVVDGCVAVIDN-PD-IDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 GMATNIP HNL EVVD +ID P+ +D+ ++ + GPDFPTG +ILGR GI +AY Sbjct: 182 GMATNIPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYR 241 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 TGRG I +RG +HIE+ + IV+TEIPY VNK ++E IA+ V++K I + DLRDE Sbjct: 242 TGRGKITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDE 301 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYKPERFTLIGILKAF 361 SDR+G R+VIE+ R +++L QLYR T LQS F V N+ ++GY P+ ++ +L F Sbjct: 302 SDREGLRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGY-PKELSIEEMLNIF 360 Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421 + R VV RRT++ L KA RAH++ GL A+ +DEV+ +IR S E A+ L+ + Sbjct: 361 LNHRRSVVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISK- 419 Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 + SE Q +AILE+RL RLTGL R+ + EL L Sbjct: 420 -------------------------LDFSEAQAQAILEMRLQRLTGLEREKLEAELAQLL 454 Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541 +I+ IL + L +IK+ELL VK R+T I++ + D+ ED I D+VV Sbjct: 455 SDIERYQTILGNPKVLDSVIKEELLEVKRRFGNERKTEIIDAVEDVSIEDLIPESDIVVV 514 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S GY++R L Y Q RGGKGR G +++ED V + + STH + F+S G V Sbjct: 515 LSRDGYLRRKDLQEYTLQGRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLAL 574 Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661 K + +P S RGK + ++L +GER+ T+ D + Y F T G +R Sbjct: 575 KGYVIP-ESKTGRGKLINRFVALEEGERVVTMHGRAVDGAK----YAFFITLRGTAKRLD 629 Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 LS+ + R+G+ M LD DEI + + ++ +L+ T GQ +R S R GR + Sbjct: 630 LSELENLTRAGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPM-GRTA 688 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GVRGI L K D VI +V + Sbjct: 689 RGVRGIRLRKNDYVIGCDVVANG------------------------------------- 711 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841 ++ L +SE GFGKRT +F + +R G G+ ++S + G + Sbjct: 712 ----------------RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLS--DRTGLI 753 Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF-----STAKDERVVSVE 895 V + V + D+I+ ++ +G +IR+ V+E + R G ++ T VVS E Sbjct: 754 VGCWSVAEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTE 812 >gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74] gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74] Length = 874 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 318/738 (43%), Positives = 458/738 (62%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ GNFGS DP AA RYTEC++ Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL +R+PN+L+NG GIAVGMATNIP HNL Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +++P+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 211 REVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L+++T LQ+ FS NM+AL P +L ++ +V + EV+V Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLM------------ 437 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R + E + L I E I Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAI 483 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 484 LASPERQRQIVSDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + +++ Y+V AT+ G V++ L D+ Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIRDYDAA---PYLVLATQGGLVKKTSLKDYDSPRS 660 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + ++D+LL +K Q +RF + +R GR + G Sbjct: 661 GGVIAINLRETDNGADDELIGAELVSADDDLLLISKKAQSIRFTATDDTLRPM-GRATSG 719 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S GD+++SM +V Sbjct: 720 VKGMSFRDGDELLSMNVV 737 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%) Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802 DE + QR+++S + +I D +G++S E +L +E ++T Sbjct: 478 DEYHAILASPERQRQIVSDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ KRT + D+R R GKG+R +K+ E + F + ++ ++KG + Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899 R E+ A R +G + + DE + + IR+ Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRD 631 >gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG] gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF] Length = 874 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 319/738 (43%), Positives = 457/738 (61%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++ GNFGS DP AA RYTEC++ Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + +P+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L+++T LQ+ FS NM+AL P +L ++ +V + EV+V Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLM------------ 437 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R + E + L I E I Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAI 483 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 484 LASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + E++ Y+V ATK G V++ L D+ Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIKDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 660 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + ++D+LL ++ Q +RF + +R GR + G Sbjct: 661 GGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 719 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S GD+++SM +V Sbjct: 720 VKGMSFRDGDELLSMNVV 737 Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802 DE + QR+++ + +I D +G++S E +L +E ++T Sbjct: 478 DEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ KRT + D+R R GKG+R +K+ E + F + ++ ++KG + Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 R E+ A R +G + + DE + + I++ E Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633 >gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] Length = 874 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 319/738 (43%), Positives = 457/738 (61%), Gaps = 43/738 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M G K + KCA Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++ GNFGS DP AA RYTEC++ Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + ++ D+ ++TVDF NYDG QEP VL AR+PN+L+NG GIAVGMATNIP HNL Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G + +P+ LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIPMR 270 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ +R+ +VVTE+PYQVN + +KIA+LV++ +I IAD+RDE S R G R+ Sbjct: 271 AVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQRL 329 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN L+++T LQ+ FS NM+AL P +L ++ +V + EV+V Sbjct: 330 VVVLKRDAVAKVVLNNLFKHTDLQTNFSANMLALVDGVPRTLSLDAFIRHWVTHQIEVIV 389 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +RAH+L GL A+ +DEV+ +IR S E AR LM Sbjct: 390 RRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLM------------ 437 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 G + + E+Q AILE++L RL L R + E + L I E I Sbjct: 438 --------------GLLEIDEIQANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAI 483 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + D+ RR+++V DM ED I ED+VVT+S GYVKR Sbjct: 484 LASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSMEDLIAEEDIVVTISRSGYVKR 543 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G ++++D V F+ +TH +LFF++ G VY+ K + LP Sbjct: 544 TRTDDYRSQKRGGKGVRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAG 603 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L+ E I I+ + E++ Y+V ATK G V++ L D+ Sbjct: 604 RDARGQHVANLLAFQPDESIAQILAIKDYEAA---PYLVLATKGGLVKKTSLKDYDSPRS 660 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723 G IA+ L + DE++ E + ++D+LL ++ Q +RF + +R GR + G Sbjct: 661 GGVIAINLRETDDGNDDELIGAELVSADDDLLLISRKAQSIRFTATDDTLRPM-GRATSG 719 Query: 724 VRGISLAKGDQVISMAIV 741 V+G+S GD+++SM +V Sbjct: 720 VKGMSFRDGDELLSMNVV 737 Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDS------SVEGNISEERCQELKLKEQFILT 802 DE + QR+++ + +I D +G++S E +L +E ++T Sbjct: 478 DEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQLVPFDGDMSME---DLIAEEDIVVT 534 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +S G+ KRT + D+R R GKG+R +K+ E + F + ++ ++KG + Sbjct: 535 ISRSGYVKRTRTDDYRSQKRGGKGVRG---AKLKEDDIVDHFFVTTTHHWLLFFTNKGRV 591 Query: 863 IRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901 R E+ A R +G + + DE + + I++ E Sbjct: 592 YRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633 >gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1] gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1] Length = 733 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 335/811 (41%), Positives = 496/811 (61%), Gaps = 86/811 (10%) Query: 97 LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156 + RMAQ WS R +L++G GNFGS+DGD AA+RYTE R+ K A +L D+ K+TVDF+ N Sbjct: 1 MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60 Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216 YDGS +EP+VL AR+PN+LVNG GIAVGMATNIP HNLGE +D V+DNPD+ L Sbjct: 61 YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120 Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276 ME+I GPDFPTGA+++GR+GI AY TG+GSIV+R + IE TS +E+IVVTE PY VN Sbjct: 121 MEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVN 180 Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336 K + E I L +EKRI I +RDES R+G R VIE++R ASA+VILN L++ TSLQ+ Sbjct: 181 KTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQTN 240 Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396 FS NM+A+ P+ +L I+ ++ ++EV+VRRT++ KA RAH+L GL +A+ + Sbjct: 241 FSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVALDH 300 Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456 LDEV+ IIR S A+ ELM R LSE Q++A Sbjct: 301 LDEVITIIRNSETDTIAQAELMSR--------------------------FELSERQSQA 334 Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516 IL++RL RLTGL RD I++E N L I + DIL+ R++ IIK+E+ VK + R Sbjct: 335 ILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADAR 394 Query: 517 RTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575 RT ++ G +L +EDED I ED+++T+S+ GY+KR+ +RAQ+RGG+G G + ++D Sbjct: 395 RTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDD 454 Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635 FV +L STH +VLFF++LG VY+ K + +P A+G ++N+L L++GE I TI+ Sbjct: 455 FVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIIN 514 Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695 +++ + N Y F T+ G V+R +S+F I ++G A+ L DE+++V + D Sbjct: 515 ARKEDVA--NKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENED 572 Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755 +++ T+ G VRF ++A+R GR + GVRG++L +GD+V+ + Sbjct: 573 VIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLREGDKVVGAS---------------- 615 Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815 R+++G Q +L ++EKG+GKRT + Sbjct: 616 -------RIVNG------------------------------QEVLIITEKGYGKRTEAS 638 Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875 ++ R GKGI+ +++ N G L + +N N+ I++++D G +IR V I R Sbjct: 639 EYPTKGRGGKGIKTANITAKN--GPLARLVTINGNEDIMVITDTGVIIRTNVANISQTGR 696 Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 +T GV + ++ ++V+V + E EI D++ Sbjct: 697 STMGVKVMRLDQEAKIVTVALV-EQEIEDKS 726 >gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium accolens ATCC 49726] gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium accolens ATCC 49726] Length = 851 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 345/899 (38%), Positives = 522/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTEC+L Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++NP D L A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ SG R+ IV+TE+P+QVN ++ IAE V +I I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSNYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR L K+L Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D +Q AIL ++L RL L R I +EL + EI + I Sbjct: 421 LDVDD----------------IQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL ++ ++ RRT I+ ++ DED I RE++VVT++ GY KR Sbjct: 465 LAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIARENVVVTITATGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP Sbjct: 525 TKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V AT+ G V++++L+D+ Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ+++M++V +D + SG + T++ EE Sbjct: 702 RGDDQLLAMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + G G T F+ + + GK I A + K Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISIDK--------------- 766 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 +D+I ++ G +IR VN+IR +SRAT GV + A D +++++R E + ++A++ Sbjct: 767 DDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQA 825 >gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC 49725] gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC 49725] Length = 851 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 346/899 (38%), Positives = 522/899 (58%), Gaps = 91/899 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M G + YVK A Sbjct: 12 IFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRPERGYVKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R + MG++HPHG++AIYD L R+AQ W++R L++GQGNFGS D PAA RYTEC+L Sbjct: 72 RPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECKL 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF PNYDG EP VL +R PN+L+NG GGIAVGMATNIP HNL Sbjct: 132 TPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGGIAVGMATNIPPHNL 191 Query: 196 GEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ +++NP D L A ME ++GPDFPT +I+G GIK+AY TGRGSI +R Sbjct: 192 NELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQGIKDAYTTGRGSIRMR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 GV+ IE+ SG R+ IV+TE+P+QVN ++ IAE V +I I+ + DE SDR G R+ Sbjct: 252 GVTSIEE-SGSRQTIVITELPFQVNPDNLISNIAESVANGKIAGISKIEDESSDRVGMRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A A V+LN LY+++ LQ+ F NM+++ P L +L +VA + EV+V Sbjct: 311 VVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLDQMLSNYVAHQIEVIV 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L++A RAH+L GL A+ LDEV+ +IR SP + AR L K+L Sbjct: 371 RRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGL----------KEL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D +Q AIL ++L RL L R I +EL + EI + I Sbjct: 421 LDVDD----------------IQADAILAMQLRRLAALERQKIVDELAEIEEEIADLKHI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ EL ++ ++ RRT I+ ++ DED I RE++VVT++ GY KR Sbjct: 465 LAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIARENVVVTITATGYAKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + Y++Q+RGGKG G ++ +D V + F+ STH +LFF++ G VY+ K + LP Sbjct: 525 TKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPESG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 ARG+ + N+L E+I ++ +S + Y+V AT+ G V++++L+D+ Sbjct: 585 RAARGQHVANLLEFQPEEKIAQVIQI---QSYEDAPYLVLATQQGRVKKSRLTDYESARS 641 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISL 729 +G IA+ L+ D ++ + ++ +DILLT++ GQ +RF ++ GR + GV+G+ Sbjct: 642 AGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRF 701 Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789 DQ+++M++V +D + SG + T++ EE Sbjct: 702 RGDDQLLAMSVV------HDGEFLLVA--------TSGGYGKRTAI-----------EEY 736 Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 + G G T F+ + + GK I A + K +EI A+ + Sbjct: 737 TPQ-----------GRGGLGVMT----FKYTPKRGKLIGAISIDKDDEIFAITSA----- 776 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 G +IR VN+IR +SRAT GV + A D +++++R E + ++A++ Sbjct: 777 ----------GGVIRTEVNQIRPSSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQA 825 >gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 808 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 331/848 (39%), Positives = 497/848 (58%), Gaps = 122/848 (14%) Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R I GQGNFGS+DGD AA RY Sbjct: 12 FVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRY 71 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K +H LL D+ KDTVDF PNYDGS EP VL +R PN+L+NG GIAVGMATNI Sbjct: 72 TEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNI 131 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H+L E++DG + ++DN D L+ +M+ I+GPDFPTG +I G+ GI AY TGRG + + Sbjct: 132 PPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKV 191 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R +HIEK + +++ I++ E+PYQ NKA ++E+IAELV+E++I I+++RDES+++G RV Sbjct: 192 RAKTHIEKKT-NKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRV 250 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELKR A ++++LN L++ T+++S F V M+A++ +P+ F+L+ +L F+ R+ V++ Sbjct: 251 VIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVII 310 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S + TAR L+ + Sbjct: 311 RRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK---------- 360 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q AIL+++L RLTGL R+ I NEL L EI +I Sbjct: 361 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 404 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L S + L +I+ EL ++ + D PR T+I + D++ ED I E+MVVT++H GY+KR Sbjct: 405 LKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKR 464 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP Y Q+RGGKG+ V D+DF+ F +TH +++F + G +Y KV+++P GS Sbjct: 465 VPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGS 524 Query: 611 PQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 +GKA++N+++L E+I I+P + DES + F TK+G V+R LS++ I Sbjct: 525 RTVKGKAVVNLINLQAEEKIMAIIPTTDFDESKS----LCFFTKNGIVKRTNLSEYQNIR 580 Query: 670 RSGKIAMKLDSRDEILSV------------------------------------ETCTQE 693 G A+ LD DE+++ TQ Sbjct: 581 SVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESVSTQG 640 Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 + TK G C++FP++ +R GR S GV I + + + A+V+ D Sbjct: 641 KMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEND-------- 691 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 EQ IL++S KG GKRT+ Sbjct: 692 -------------------------------------------EQEILSISAKGIGKRTN 708 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 + ++R+ +R GKG+ +++ + L++V V++ ++ ++ G +IRV + IR A Sbjct: 709 AGEYRLQSRGGKGVICMKLTE--KTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKA 766 Query: 874 SRATKGVV 881 R T GV+ Sbjct: 767 GRNTSGVI 774 >gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii] gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii] Length = 880 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/905 (38%), Positives = 515/905 (56%), Gaps = 86/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V + E SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K + KCAR+ Sbjct: 25 VELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKCARVV 84 Query: 79 GEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVDGDPPAA 127 GEV+GK+HPHG+ A+YDAL R+AQ +SLR LI G GNFGS+DGDP AA Sbjct: 85 GEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLDGDPAAA 144 Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTECRL + LL DL DTVDF PN+DGS +EPVV+ AR PNVL+NG GIAVGM Sbjct: 145 MRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGIAVGM 204 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EVVD A+I NP+ ++ LME + GPDFPTG ILG +GI +A+ TGRG Sbjct: 205 ATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFRTGRG 264 Query: 247 SIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +I +RG + E+ G R IV+TEIPY NK+ ++ KIAELV K + ++D+RDESD Sbjct: 265 TITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVSDIRDESD 324 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+V+ELKRGA A V+LN LY++T+LQS FS N+V + +PE F++ +L+ F+ F Sbjct: 325 RAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEIFLDF 384 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R VV RR + L +A R H+L G + LD+VV++++ + + +A + L Q+ + Sbjct: 385 RCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQAL-QKDFG- 442 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS Q A+L + L R+T L R+ I E NSL + Sbjct: 443 ------------------------LSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQA 478 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543 + ++LS++ R+L ++++E L++K+E +PRRT + E G +++ D I + +T+S Sbjct: 479 SDLRELLSNKQRVLKVVEKEALALKNEFGSPRRTVLEEYGDGRIDNIDVIPNNESFLTLS 538 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR+ + AQRRG G+SG M+ D + D F+ H VL FS G VY + Sbjct: 539 EKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRA 598 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P S + G +I +LS+ GERIT+I P E + ++V T G ++R +L Sbjct: 599 YQVPECSRTSTGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYIKRTELP 655 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721 F I G +A++L DE+ V TQ + I + ++ G ++ P ++R R + Sbjct: 656 AFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMR----RGA 711 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 G+R + + +GD++ ++ IV + + E + Sbjct: 712 RGLRAMRIKEGDEIAAIDIV--PGSVWKESPTLL-------------------------- 743 Query: 782 EGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + C K E ++L VSE G KR F + G+ + + + Sbjct: 744 ---CTHVLCNRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLAS 800 Query: 841 LVAV-FPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + V V+D N++I++ + G R V EI I SR +G+ + D++V SV Sbjct: 801 MFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSV 860 Query: 897 IRESE 901 + S+ Sbjct: 861 VAASD 865 >gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii] gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii] Length = 880 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/905 (38%), Positives = 514/905 (56%), Gaps = 86/905 (9%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 V + E SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ K + KCAR+ Sbjct: 25 VELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHRKCARVV 84 Query: 79 GEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVDGDPPAA 127 GEV+GK+HPHG+ A+YDAL R+AQ +SLR LI G GNFGS+DGDP AA Sbjct: 85 GEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLDGDPAAA 144 Query: 128 ERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 RYTECRL + LL DL DTVDF PN+DGS +EPVV+ AR PNVL+NG GIAVGM Sbjct: 145 MRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGASGIAVGM 204 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIP HNL EVVD A+I NP+ ++ LME + GPDFPTG ILG +GI +A+ TGRG Sbjct: 205 ATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADAFRTGRG 264 Query: 247 SIVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 +I +RG + E+ G R I++TEIPY NK+ ++ KIAELV K + ++D+RDESD Sbjct: 265 TITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVSDIRDESD 324 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+V+ELKRGA A V+LN LY++T+LQS FS N+V + +PE F++ +L+ F+ F Sbjct: 325 RAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLLEIFLDF 384 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R VV RR + L +A R H+L G + LD+VV++++ + + +A + L Sbjct: 385 RCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ------ 438 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 KD LS Q A+L + L R+T L R+ I E NSL + Sbjct: 439 ---KDF-----------------ELSAAQAEALLGMPLRRITSLERNKILEEHNSLLAQA 478 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543 ++LS++ R+L ++++E L++K+E +PRRT + E G +++ D I + +T+S Sbjct: 479 SNLRELLSNKQRVLRVVEKEALALKNEFGSPRRTVLEEDGDGRIDNIDVIPNNESFLTLS 538 Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603 GY+KR+ + AQRRG G+SG M+ D + D F+ H VL FS G VY + Sbjct: 539 EKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGVVYSFRA 598 Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +++P S + G +I +LS+ GERIT+I P E + ++V T G ++R +L Sbjct: 599 YQVPECSRTSAGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYIKRTELP 655 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNS 721 F I G +A++L DE+ V TQ + I + ++ G ++ P ++R R + Sbjct: 656 AFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPCEFRSMR----RGA 711 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 G+R + + +GD++ ++ IV + + E + Sbjct: 712 RGLRAMRIKEGDEIAAIDIV--PGSVWKESPTLL-------------------------- 743 Query: 782 EGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 + C+ K E ++L VSE G KR F + G+ + + + Sbjct: 744 ---CTHVLCKRSKASEAPWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDRLAS 800 Query: 841 LVAV-FPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 + V V+D N++I++ + G R V EI I SR +G+ + D++V SV Sbjct: 801 MFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDKVKSVSV 860 Query: 897 IRESE 901 + S+ Sbjct: 861 VAASD 865 >gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501] gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501] Length = 795 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 333/893 (37%), Positives = 514/893 (57%), Gaps = 104/893 (11%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ ITSV I ++M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ ++G+ NK + Sbjct: 3 EQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKPHK 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI GEV+GKYHPHG+AA+YDA+ RMAQ +S R LI+G GNFGS+DGD AA RYTE Sbjct: 63 KSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRYTE 122 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+T++F N+DGS QEP VL +R PN+LVNG GIAVGM+T+IP Sbjct: 123 ARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDIPP 182 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+ + ++++ D+ ++ LME I GPDFPTG I+G IK AY TG+G I +RG Sbjct: 183 HNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDEIKKAYRTGKGRITLRG 242 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IEK S + E+IV+TEIPYQ+NKA ++E+IA +++ ++ ++ ++RDESD+ G R+VI Sbjct: 243 KTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLRIVI 302 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK A+ ++ILN+LY+YTSLQ+ +NM+AL +PE L IL+ F+ FR EVV RR Sbjct: 303 ELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQQPEVMDLKTILQHFLDFRREVVTRR 362 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ L K++DR H+L+GL A+ NLD+V+ IIR S P TA++ L + Sbjct: 363 TEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDK------------ 410 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 + +S+ Q AIL+++L RL L R I EL L +I+ IL+ Sbjct: 411 --------------LNVSKKQAAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILN 456 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 + + +IK+EL+ +K+E R+T I+ E ++++ D I ED+V++ S+ Y+KR Sbjct: 457 EKEVMDDLIKKELIEIKEEYGDERKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLKR 516 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 + R GKG D++TD+ +T +LFF++ G V+ K ++P Sbjct: 517 ---TTDIENIRAGKG---------DYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHH 564 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 + G L + L L E I I+ DE+ Y+ AT+ G +++ ++ + Sbjct: 565 GLSTGDPLSDYLKLPLDEEIVDILILT-DETKEK--YITIATEEGLIKKTVGKEY-ETTV 620 Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 S A+ L+ DE++ + + ++LL TK GQ + F +I GRN+ G +GI LA Sbjct: 621 SSIKAINLNEEDEVIGAKVTDGQQNLLLGTKGGQTIHFSEDSIS-DTGRNTKGSKGIDLA 679 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 + D+VIS L A+++Y Sbjct: 680 ENDKVISFN--LTANSNY------------------------------------------ 695 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++T + G RT ++I NR+GKG++ N+ ++ + + Sbjct: 696 ---------VITATADGRATRTDINAYQIQNRNGKGLKTL----TNDSYEVIDIITASKE 742 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESE 901 D+++ V+++G L PV+EI R + F D + V+ + ++ ++E Sbjct: 743 DKLLFVTEEGQLEEAPVSEITETERVGRMYTQFKLDDDKIKEVIRLPQLNKTE 795 >gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 816 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 328/886 (37%), Positives = 502/886 (56%), Gaps = 89/886 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + +E+++SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+ ++ + K A Sbjct: 14 VIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKKSA 73 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GE MGKYHPHG+AAIY+ + RM+QD+S+R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 74 RVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 133 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +L D+ +DTVD+ PN+D S +EP VL +R PN+LVNG GIAVGMATN+P HNL Sbjct: 134 HSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPHNL 193 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVVD C ++DNPD+++ LM + GPDFPTG VI+GR GI +AY TGRG IV+RG + Sbjct: 194 REVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIVVRGCAE 253 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE ++ IV+T+IPY VNK+ ++E I + V+ ++ I D+RDES+R+G R+V+EL Sbjct: 254 IEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIRLVLELH 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ++L QLY T LQ+ F V +AL +P L G+L+ F+ R VV RRT+Y Sbjct: 314 RDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMVVRRRTQY 373 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +RAH+L GL A+ +D V+ +IR S +P A+ L++ Sbjct: 374 RLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE--------------- 418 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + +E Q +AIL++RL RLT L + ++ EL L +I IL + Sbjct: 419 -----------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPA 467 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L ++++ELL VK RRT I + + D+ ED I ++VV ++ G+++R+PL Sbjct: 468 ELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPLQD 527 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-R 614 YR Q RGGKG G ++ ED V+ + + +TH S+ F+ G V+ K +P P++ R Sbjct: 528 YRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIP--EPKSGR 585 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GK + +SL++GE + T D + +V TK G +R + + I R+G+ Sbjct: 586 GKHVSTFISLDEGESVVTF----RDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRR 641 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 + L+ D I V E+ +LLTT GQ +R + R GR + GVRGI L D Sbjct: 642 ILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRP-QGRAAKGVRGIKLDPDDL 700 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+ +++ ++ ++ + +R Sbjct: 701 VVGCDVIMPG-----RQVLFISQLGMGKR------------------------------- 724 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 T +F + +R G G+RA + + G LV + V D+D+I+ Sbjct: 725 -----------------TRYEEFTVHHRGGMGVRAMRLGE--RTGHLVGAWGVADDDEIM 765 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 +++ +G ++R ++ SR+ G+ + + ++V V IR S Sbjct: 766 VITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRCS 811 Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 24/190 (12%) Query: 518 TRIVEGLLDMEDEDCIVR------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571 TR +L +E++D I R ED ++ + G RV + +R Q R KG G+ + Sbjct: 636 TRAGRRILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKL 695 Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631 +D V ++ VLF S LG + + + RG + + ++ GER Sbjct: 696 DPDDLVVGCDVIMPGRQVLFISQLGMGKRTRYEEFTV---HHRGG--MGVRAMRLGERTG 750 Query: 632 TIMPFPEDESSW---NNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEI-- 684 ++ +W ++ ++ T G V R D ++RS G ++LD D++ Sbjct: 751 HLV------GAWGVADDDEIMVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVAD 804 Query: 685 LSVETCTQEN 694 ++V C+ E Sbjct: 805 VTVIRCSMEE 814 >gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] Length = 850 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 348/898 (38%), Positives = 507/898 (56%), Gaps = 96/898 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M G + K + Sbjct: 18 VRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPASSFSKSS 77 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR L+ GQGNFG+ PAA RYTEC++ Sbjct: 78 RVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTECKM 137 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++ VDF+ NYDG QEP +L AR+PN+L NG GIAVGMAT IP HNL Sbjct: 138 APLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNL 197 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 E+ G +D+ L+AL+++I GPDFPTGA ILG GI++AY TGRGSI R Sbjct: 198 RELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATILGHKGIEDAYRTGRGSITQR 257 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R+ +VVTE+PYQVN + +KIA+LVR+ +I IAD+RDE S R G R+ Sbjct: 258 AVVSVEEIQG-RQCLVVTELPYQVNPDNLADKIAQLVRDGQIQGIADIRDETSGRTGQRL 316 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY+ T LQ FS NM+AL P ++ G ++ ++ + +V+V Sbjct: 317 VIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVDGVPRTLSIDGFIRHWITHQIDVIV 376 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L KA +R H+L G A+ LDEV+ +IR SP + AR L Sbjct: 377 RRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEAR-------------AGL 423 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 IDL+D + VQ AIL L+L RL L R I +E L + + DI Sbjct: 424 IDLLD-------------VDAVQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDI 470 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L R II +EL + D+ RRT I+ +M ED I ED+VVT++ G+ KR Sbjct: 471 LDKPERQRTIISEELSEIVDKFGDERRTTILPFDGEMSMEDLIPEEDVVVTITRDGFAKR 530 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 YR+Q+RGGKG G +R D V F+ +TH +LFF++LG VY+ K + +P G Sbjct: 531 TRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGG 590 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ ERI ++ E + ++V ATK G V+++ L+ + Sbjct: 591 RDAKGQHVANLLAFQPDERIAQVLAIRTYEDAD---HLVLATKSGLVKKSPLALYNSPRS 647 Query: 671 SGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGV 724 G IA+ L + DE++S +T + D++L ++ GQ VRF + ++ GR++ GV Sbjct: 648 GGIIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRFAATDEQLRPMGRSTSGV 707 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 RG+ D+++SM + VEG Sbjct: 708 RGMKFRGDDELLSMEV---------------------------------------PVEGT 728 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L V+E G+ KRT ++ +R G+R +S +E G LV Sbjct: 729 --------------DLLIVTESGYAKRTPVAEYPTKSRGTMGVRVGKLS--DERGGLVGA 772 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 V ++ ++++++ G L++V +++R SR T GV+ D+R++++ R +S + Sbjct: 773 LVVKPDEDVMVITESGKLVQVNASDVRPTSRNTMGVIFARPDADDRIIAITRNSDSTV 830 >gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 353/900 (39%), Positives = 505/900 (56%), Gaps = 95/900 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EH + + +K + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 32 EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS Sbjct: 91 GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA+RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GI Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238 AVGMATNIP HN+ EV G +++P+ L+AL+ + GPDFPTGA ILGR GI+ Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG I +R V ++E+ G R +VVTE+PY N + KIAE+VR+ +I IAD Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329 Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 + +V + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 K+L+D IDD VQ +AIL+++L +L L I++E Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536 + L +I E IL S R +I +EL + + RRT I+ G DM ED I E Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MVV+++ GYVKR + YR+Q RGGKG G +R +D V L VSTH +LFF++ G Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFG 603 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + L A+G+ + N+L+ ERI I P + Y+V AT+ G Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714 V++ L D+ +G IA+KL DE++S + ++D++L + GQ +RF + A+R Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV G+ D +++M Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 ++ EE + ++ TV++ GF KRT ++R+ NR G GI+ + Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++ G L V ++ ++++V G ++R V + R T GV+ K +R+V+V Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844 Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 16/145 (11%) Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 QR +IS + EI + D + +G++S ++L +E+ +++++ G+ KRT Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 +R R GKG+R + + + L+ V+ + ++ ++ G + R+ E+ A Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHLLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616 Query: 874 SRATKG---VVIFSTAKDERVVSVE 895 R KG + + DER+ ++ Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641 >gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000] gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000] Length = 832 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 344/884 (38%), Positives = 499/884 (56%), Gaps = 94/884 (10%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K + +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + +K Y K Sbjct: 25 KRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A GEV+ +YHPHG+AA+Y + RMAQD+S+R LL++GQGNFGSVD DPPAA RYTE Sbjct: 85 SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEA 144 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K A +L+D+ K+TV F PN+D S EP VL A P +LVNG GIA+GMATN+P H Sbjct: 145 RMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EVV+ V ID+ D ++ LM I+GPDFPT +I G+ GIK AY TG+G I +R Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVI 312 IE+T DRE IVV E+PY V K + EKIAELV++ +I +AD+RDE S+R G R++I Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLII 324 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+G + ++LNQL+++T L+ F + +AL +P+ L ++K FV R EV+ +R Sbjct: 325 ELKKGVATQIVLNQLWKHTDLEITFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N E AR LM + Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSK------------ 432 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 LSE Q +AIL++ L RLT L + I EL L I C D+L+ Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKR 550 ++L +IK EL ++ ++ RR+ I+ D E +ED I ED+ V+++ G++KR Sbjct: 479 HPEKILAVIKDELKNIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 VP S YR Q RGG G G + E ++ LF+ ST + F+ G + KV +P + Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598 Query: 611 PQARGKALINILSLNQGERIT---TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 ++GK++ IL+L E+IT T+ F +S ++ TK G +++ +L Sbjct: 599 KTSQGKSIKFILNLAPDEKITSYFTVSDFNPKQS------IIMVTKMGTIKKMELKHLEN 652 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G +A+ L++ DE++ V +D ++TT G +R +R GR + GV+GI Sbjct: 653 AKKRGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNM-GRAAAGVKGI 711 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 +L D IC V GN Sbjct: 712 TLDDND------------------IC---------------------------VSGNGIH 726 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 K + ++ ++E G GKR SS F R GKG + N+ G +V+V V Sbjct: 727 --------KGESLIVITENGIGKRLSSKQFNAKGRGGKG--QIYIKPDNKTGNVVSVKTV 776 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 D D+I++V+ I++ + I R KGV I + + +V Sbjct: 777 GDKDEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGAKV 820 >gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] Length = 898 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 352/900 (39%), Positives = 504/900 (56%), Gaps = 95/900 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EH + + +K + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 32 EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS Sbjct: 91 GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA+RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GI Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238 AVGMATNIP HN+ EV G +++P+ L+AL+ + GPDFPTGA ILGR GI+ Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG I +R V ++E+ G R +VVTE+PY N + KIAE+VR+ +I IAD Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIAD 329 Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 + +V + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 K+L+D IDD VQ +AIL+++L +L L I++E Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536 + L +I E IL S R +I +EL + + RRT I+ G DM ED I E Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MVV+++ GYVKR + YR+Q RGGKG G +R +D V VSTH +LFF++ G Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + L A+G+ + N+L+ ERI I P + Y+V AT+ G Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714 V++ L D+ +G IA+KL DE++S + ++D++L + GQ +RF + A+R Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV G+ D +++M Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 ++ EE + ++ TV++ GF KRT ++R+ NR G GI+ + Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++ G L V ++ ++++V G ++R V + R T GV+ K +R+V+V Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844 Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 16/145 (11%) Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 QR +IS + EI + D + +G++S ++L +E+ +++++ G+ KRT Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 +R R GKG+R + + + + V+ + ++ ++ G + R+ E+ A Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHFLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616 Query: 874 SRATKG---VVIFSTAKDERVVSVE 895 R KG + + DER+ ++ Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641 >gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 352/900 (39%), Positives = 504/900 (56%), Gaps = 95/900 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 EH + + +K + V + EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 32 EHYVLPEGAADK-VEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYD 90 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 G ++ + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW R L GQGNFGS Sbjct: 91 GGYRPDRAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGN 150 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D AA+RYTE ++ A ++ D+ +DTVD + NYDG QEPVVL ARYPN+LVNG GI Sbjct: 151 DGAAAQRYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGI 210 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238 AVGMATNIP HN+ EV G +++P+ L+AL+ + GPDFPTGA ILGR GI+ Sbjct: 211 AVGMATNIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIE 270 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG I +R V ++E+ G R +VVTE+PY N + KIAE+VR+ +I IAD Sbjct: 271 EVYRTGRGPITMRAVVNVEEIQG-RTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIAD 329 Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 +RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+AL P +L G Sbjct: 330 MRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGF 389 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 + +V + +V+VRRT + KA +RAH+L GL A+ LDEV+ IR S + + AR L Sbjct: 390 VHHWVKHQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREAL 449 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 K+L+D IDD VQ +AIL+++L +L L I++E Sbjct: 450 ----------KELLD-IDD---------------VQAQAILQMQLRQLAALESQKIQDEY 483 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVRE 536 + L +I E IL S R +I +EL + + RRT I+ G DM ED I E Sbjct: 484 DDLMAKIAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEE 543 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 +MVV+++ GYVKR + YR+Q RGGKG G +R +D V VSTH +LFF++ G Sbjct: 544 EMVVSITRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFG 603 Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656 VY+ K + L A+G+ + N+L+ ERI I P + Y+V AT+ G Sbjct: 604 RVYRIKTYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVD---YGRAPYLVLATRGGL 660 Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIR 714 V++ L D+ +G IA+KL DE++S + ++D++L + GQ +RF + A+R Sbjct: 661 VKKTPLLDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALR 720 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 GR + GV G+ D +++M Sbjct: 721 PM-GRATSGVTGMKFRDDDSLLTM------------------------------------ 743 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 ++ EE + ++ TV++ GF KRT ++R+ NR G GI+ + Sbjct: 744 ---------DVVEE--------DGYVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL-- 784 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++ G L V ++ ++++V G ++R V + R T GV+ K +R+V+V Sbjct: 785 VDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAV 844 Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 16/145 (11%) Query: 761 QRRLISGDTEEITSLKND-------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 QR +IS + EI + D + +G++S ++L +E+ +++++ G+ KRT Sbjct: 503 QREVISEELAEIVAKHGDDRRTEIMAGFDGDMS---IEDLIPEEEMVVSITRGGYVKRTR 559 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 +R R GKG+R + + + + V+ + ++ ++ G + R+ E+ A Sbjct: 560 IDQYRSQARGGKGVRGATLRGDDVVEHFLT---VSTHHWLLFFTNFGRVYRIKTYELLEA 616 Query: 874 SRATKG---VVIFSTAKDERVVSVE 895 R KG + + DER+ ++ Sbjct: 617 GRDAKGQHVANLLAFQPDERIAQIQ 641 >gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 813 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 328/881 (37%), Positives = 492/881 (55%), Gaps = 87/881 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +SI E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ ++ KCA Sbjct: 12 LVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+V+G +HPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RYTE ++ Sbjct: 72 KIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +++D+ K+TV F PN+D S EP VL R+P +L NG GIAVGM TN+P HNL Sbjct: 132 ARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNL 191 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+ A I+NP++ + L + I GPDFPTG +I G+ GI+ +Y TGRG IV+R Sbjct: 192 REIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIEL 314 IE S R+ I+ TE+PYQVN ++ +I EL R K I IA++ DE SDR G R+V+EL Sbjct: 252 IETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVEL 311 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+G A V+LN L+ T LQS F+V +AL +P TL +++ FV R +VV RR Sbjct: 312 KKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRAH 371 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA++R H++ L A+ +D+++ +IR S N E A++ L ++ Sbjct: 372 FELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQ-------------- 417 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 VQ +AI+++++ RLTGL + +R EL L I ++L+S Sbjct: 418 ------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKDLTELISSLEELLTSP 465 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPL 553 ++LG++K+E + D RRT IV ++ D ED I +E+MV+ +SHLGY+KRVP+ Sbjct: 466 QKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPV 525 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 S YR Q RGGKG S + DF++ +F STH V+F +S G Y KV+ +P Sbjct: 526 SAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRAN 585 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG + ++L + E IT I+ E N YV AT G V++ +F+ G Sbjct: 586 RGSHIKSLLMVATDEEITAIVSLRE---FSNKSYVFMATARGVVKKVTTDNFVNAKTRGI 642 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+KL D ++S E++++L T+ G+ +R +R GRNS GV GI L D Sbjct: 643 IALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREM-GRNSSGVIGIKLTSED 701 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 V A VL +S QR+ Sbjct: 702 LV---AGVL--------------RVSEQRK------------------------------ 714 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L ++E G+GKR S +F + R G + ++ + GA++ V D D+ Sbjct: 715 ------VLIMTENGYGKRVSFSEFSVHGRGTAGQKI--YTQTDRKGAIIGALAVLDTDEC 766 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ +G IRV V I + R +GV + + VV + Sbjct: 767 MCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGL 807 Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 16/224 (7%) Query: 683 EILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 E L VE Q+ + ++L + LG R P+SA R R G +LA D + I Sbjct: 497 EYLDVEDFIQKEEMVILISHLGYIKRVPVSAYR-NQNRGGKGSSSANLAAHDFI--SQIF 553 Query: 742 LHADADY------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + DY R ++K + I SL ++ E + +E Sbjct: 554 TASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFSN 613 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 K ++ + +G K+ ++ +F N +GI A +S + LV+ V D D+++L Sbjct: 614 K-SYVFMATARGVVKKVTTDNF--VNAKTRGIIALKLSGGD---TLVSAVLVQDEDEVML 667 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++ +G +R+ E+R R + GV+ ++ V V R+ E Sbjct: 668 ITRQGKALRMSGREVREMGRNSSGVIGIKLTSEDLVAGVLRVSE 711 >gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8] gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8] Length = 829 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 334/896 (37%), Positives = 514/896 (57%), Gaps = 91/896 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT + + E +SI EM+ S++ YA++VI+ RAIPD+RDGLKPVHRR L+ M Sbjct: 1 MTSEVPPAGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 MG +K K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R L++GQGNFGSV Sbjct: 61 WDMGNTSDKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL A LL+DL K+TV+F PNYD S +EP VL ++ PN+LVNG Sbjct: 121 DGDAAAASRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTD 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT +P HNL EV +D P + ++ L++I+ GPDFPTG +++G G+KN Sbjct: 181 GIAVGMATKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILMGVDGVKNI 240 Query: 241 YATGRGSIVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 YATG+G IV+RGV+ IE++ G ++I+VTE+PYQVNKA + IA++V++K++ I+D Sbjct: 241 YATGQGRIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISD 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 +RDESD+ G RVV EL++G + VILN LYR+T+L+S FS +A+ P+ L +L Sbjct: 301 IRDESDKDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDGTPKLLNLPALL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 FV R EV+ RR+++ L K ++R H+L GL A+A++D+++ IR S + AR L+ Sbjct: 361 GNFVHHRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALI 420 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 L E+Q AIL+++L RL L + I +E + Sbjct: 421 S--------------------------GFGLDELQANAILQMQLRRLAALEQQKIVDEKS 454 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 +L EI + IL+S + I++E + + RRT I D+ ED I + + Sbjct: 455 TLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLSTEDLIEDKTV 514 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V+++ Y+KR+ L YR QRRGG G +G+ +++D V+ +F +L F+++G V Sbjct: 515 LVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRV 574 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y KV+++P S A+GK ++N+L+L + E +TT++P E + Y++FAT+ G V Sbjct: 575 YWLKVYQIPESSRIAKGKPIVNLLNL-KDEVVTTVIPIRE---FRKDRYLLFATQLGQVI 630 Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 + +F +G A++L D+++ V T +++L+T+ G +RF +R+ G Sbjct: 631 KIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFGYGLRFHEDTVRI-VG 689 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 R + GV G+ L +G+ I +A+ L Sbjct: 690 RGASGVIGMRL-RGNDTI-VALTL------------------------------------ 711 Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 +++ +L++++ GFGKRT DFR R+ G++ V + Sbjct: 712 ----------------VEKDHLLSITDAGFGKRTEFDDFRGHGRATMGVKNMQVER---- 751 Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ V D D+I +++ G +IR VN IRI R KGV I + ++V+ V Sbjct: 752 DVVIHSRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDKVIGV 807 >gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] Length = 808 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 330/881 (37%), Positives = 501/881 (56%), Gaps = 93/881 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S +I DE+ Y+ Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++G+ N + KCA Sbjct: 4 ILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKCA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+A++YDAL R+AQ +S+R L+ GQGNFGS+D DPPAA RYTE +L Sbjct: 64 RIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAKL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L DL K+TV N+D S EP VL ++ PN+L+NG GIAVGMAT+IP HNL Sbjct: 124 SELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EVV+ +I+NP+ + L+ II+GPDFPTGA+I+ + YATG+G IV+RG H Sbjct: 184 QEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNELTEVYATGKGRIVLRGKVH 243 Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ G R +V+TEIPY V+KAA++E+IA + + I ++RDESD+ G R+V+E+ Sbjct: 244 FEE--GKRFNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 + A+A++ILN LY++TSLQ+ FSV M+ ++G +P+ L +LKAF+ R +V+ +R + Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKRAE 361 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L RAH+L G+ A + VV I+R S + E A + L++ Sbjct: 362 YELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIE--------------- 406 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + ++ Q +AIL++RL RLTGL + ++ E + L +I++ DILS Sbjct: 407 -----------ALSITNEQAKAILDMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRD 455 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 R+ ++ QEL +K + RRT+I + L ED I ED+V+T++ GY+K Sbjct: 456 ERVYNVMYQELEELKKKYADERRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTS 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L YR+QRRGGKG G ++D + + H+ LF +S G Y K + + + Sbjct: 516 LKDYRSQRRGGKGIVGARTAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRD 575 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 +GK + L+L + E + T++ F E W +V TK G ++R L +F G Sbjct: 576 TKGKPIRAYLNLEEDESVLTMISFDE----WKG-DLVLVTKSGRIKRTPLKEFENTTSRG 630 Query: 673 KIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 A+ D ++S + E+D I++ TK G +RFP+ +R GR+++GV GI L + Sbjct: 631 IRAITFSDSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQM-GRSAMGVIGIRLRE 689 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D+V+ M N+ +E C+ Sbjct: 690 KDEVVGMV--------------------------------------------NVPDENCE 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-N 850 ILT++ +GFGKRT D+R+ +R G GI+ + + + G L + V D Sbjct: 706 --------ILTITVRGFGKRTPVNDYRVQSRGGVGIKT--MPGVEKAGQLCGIDIVADPK 755 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +I+++ G IR ++ + SR +GV I + D+ V Sbjct: 756 SDVIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDLSGDDEV 796 Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 ++L E ++T++EKG+ K TS D+R R GKGI ++ +EI + V + Sbjct: 493 EDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGARTAEDDEI---LTVCTSKMH 549 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSV 894 Q + V+ G + EI + R TKG I + +DE V+++ Sbjct: 550 SQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTM 596 >gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii ATCC 51333] gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii ATCC 51333] Length = 847 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%) Query: 3 EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 E II SD E E + V + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++ Sbjct: 13 EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G N Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R L+ GQGNF Sbjct: 73 YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS PAA RYTEC++ A ++ D+ +DTVDF NYDG QEP VL +R PN+L+N Sbjct: 133 GSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233 G GIAVGMAT IP HNL EV D + NP+ L A ++ I+GPDFPTGA ILG Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R GI+ Y TGRGSI R V ++E+ +G R +V TE+PYQVN + KIA+LV++ ++ Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE SDR G R+V+ LKR A V+LN LY+ T LQ F NM+AL P Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 ++ G + ++A + +V+ RRT + L KA++R H+L G A+ LDEV+ +IR SP E Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR LM + + EVQ AIL L+L RL L R Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L ++ + DIL+ R I+ +EL + D+ R+T IV +M ED Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I ED+VVT++ GY KR + YR+Q RGGKG G +R+ED V F S+H +LFF Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + +P G ++G+ + N+L+ ERI ++ S + Y+V AT Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFADKDYLVLAT 642 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707 + G V++ +L+D+ G IA+KL DS D+++S +D++L ++ GQ +R Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702 Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 F ++ GR + GV G+ D++++M +V +AD Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 F++T E G+ KRT+ ++R+ R G G Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 I+ ++ + G LV ++ +++++ G ++R V+E+ R T+GV+ Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAV 827 Query: 887 KDERVVSV 894 + ++V+++ Sbjct: 828 EGDKVIAI 835 Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%) Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790 +L A+ + ++ K + A QR ++S + EIT D +G +S E Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +E ++T++ G+ KRT +R +R GKGI+ + + +++ F + + Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 D ++ ++ G + R EI R +KG + + DER+ V ++ Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629 Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583 +D +V + LG+VK+ L+ Y R GG K R + V+ DL +V Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642 S H L F++ E++ P R + + + + + T+ + PE Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699 +L+VV T+ G +R LS++ R G K+A +++R +++ +++++L+ Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 G+ VR + + GRN+ GV +GD+VI AI L+ D D Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRAVEGDKVI--AITLNVDND 842 >gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063] gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC 43063] gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 847 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%) Query: 3 EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 E II SD E E + V + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++ Sbjct: 13 EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G N Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R L+ GQGNF Sbjct: 73 YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS PAA RYTEC++ A ++ D+ +DTVDF NYDG QEP VL +R PN+L+N Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233 G GIAVGMAT IP HNL EV D + NP+ L A ++ I+GPDFPTGA ILG Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R GI+ Y TGRGSI R V ++E+ +G R +V TE+PYQVN + KIA+LV++ ++ Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE SDR G R+V+ LKR A V+LN LY+ T LQ F NM+AL P Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 ++ G + ++A + +V+ RRT + L KA++R H+L G A+ LDEV+ +IR SP E Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR LM + + EVQ AIL L+L RL L R Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L ++ + DIL+ R I+ +EL + D+ R+T IV +M ED Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I ED+VVT++ GY KR + YR+Q RGGKG G +R+ED V F S+H +LFF Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + +P G ++G+ + N+L+ ERI ++ S + Y+V AT Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFADKDYLVLAT 642 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707 + G V++ +L+D+ G IA+KL DS D+++S +D++L ++ GQ +R Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702 Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 F ++ GR + GV G+ D++++M +V +AD Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 F++T E G+ KRT+ ++R+ R G G Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 I+ ++ + G LV ++ +++++ G ++R V+E+ R T+GV+ Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827 Query: 887 KDERVVSV 894 + ++V+++ Sbjct: 828 EGDKVIAI 835 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%) Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790 +L A+ + ++ K + A QR ++S + EIT D +G +S E Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +E ++T++ G+ KRT +R +R GKGI+ + + +++ F + + Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 D ++ ++ G + R EI R +KG + + DER+ V ++ Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629 Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583 +D +V + LG+VK+ L+ Y R GG K R + V+ DL +V Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642 S H L F++ E++ P R + + + + + T+ + PE Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699 +L+VV T+ G +R LS++ R G K+A +++R +++ +++++L+ Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 G+ VR + + GRN+ GV +GD+VI AI L+ D D Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRADEGDKVI--AITLNVDND 842 >gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 847 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 339/908 (37%), Positives = 504/908 (55%), Gaps = 101/908 (11%) Query: 3 EHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57 E II SD E E + V + EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR++ Sbjct: 13 EEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVI 72 Query: 58 FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 + M G N Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R L+ GQGNF Sbjct: 73 YTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNF 132 Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 GS PAA RYTEC++ A ++ D+ +DTVDF NYDG QEP VL +R PN+L+N Sbjct: 133 GSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLIN 192 Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILG 233 G GIAVGMAT IP HNL EV D + NP+ L A ++ I+GPDFPTGA ILG Sbjct: 193 GSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILG 252 Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293 R GI+ Y TGRGSI R V ++E+ +G R +V TE+PYQVN + KIA+LV++ ++ Sbjct: 253 RRGIEETYRTGRGSITQRAVVNVEELNG-RTCLVATELPYQVNPDNLQVKIAQLVKDGQL 311 Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352 IAD+RDE SDR G R+V+ LKR A V+LN LY+ T LQ F NM+AL P Sbjct: 312 QGIADIRDETSDRAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTL 371 Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412 ++ G + ++A + +V+ RRT + L KA++R H+L G A+ LDEV+ +IR SP E Sbjct: 372 SIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAED 431 Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472 AR LM + + EVQ AIL L+L RL L R Sbjct: 432 ARVGLMD--------------------------FLKVDEVQADAILALQLRRLAALERQK 465 Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532 I +E L ++ + DIL+ R I+ +EL + D+ R+T IV +M ED Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDL 525 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 I ED+VVT++ GY KR + YR+Q RGGKG G +R+ED V F S+H +LFF Sbjct: 526 IPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFF 585 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 ++ G VY+ K + +P G ++G+ + N+L+ ERI ++ S + Y+V AT Sbjct: 586 TNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV---SSFTDKDYLVLAT 642 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DS---RDEILSVETCTQENDILLTTKLGQCVR 707 + G V++ +L+D+ G IA+KL DS D+++S +D++L ++ GQ +R Sbjct: 643 RLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLR 702 Query: 708 FPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766 F ++ GR + GV G+ D++++M +V +AD Sbjct: 703 FNACDEQLRPMGRATSGVTGMRFRADDELLTMDVV-RPEADL------------------ 743 Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 F++T E G+ KRT+ ++R+ R G G Sbjct: 744 --------------------------------FVVT--EGGYAKRTALSEYRVQGRGGLG 769 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 I+ ++ + G LV ++ +++++ G ++R V+E+ R T+GV+ Sbjct: 770 IKVANL--VEARGDLVGALVTEEDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVIFSRAD 827 Query: 887 KDERVVSV 894 + ++V+++ Sbjct: 828 EGDKVIAI 835 Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 19/170 (11%) Query: 741 VLHADADYDERICYMKHMSA----QRRLISGDTEEITSLKNDS------SVEGNISEERC 790 +L A+ + ++ K + A QR ++S + EIT D +G +S E Sbjct: 466 ILDEHAELEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSME-- 523 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 +L +E ++T++ G+ KRT +R +R GKGI+ + + +++ F + + Sbjct: 524 -DLIPEEDVVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHF---FTTSSH 579 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897 D ++ ++ G + R EI R +KG + + DER+ V ++ Sbjct: 580 DWLLFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQV 629 Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 104/228 (45%), Gaps = 36/228 (15%) Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGG----KGRSGVVMRDEDFVT--------DLFIV 583 +D +V + LG+VK+ L+ Y R GG K R + V+ DL +V Sbjct: 635 KDYLVLATRLGFVKKTRLTDYDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILV 694 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESS 642 S H L F++ E++ P R + + + + + T+ + PE Sbjct: 695 SRHGQSLRFNAC----DEQL------RPMGRATSGVTGMRFRADDELLTMDVVRPE---- 740 Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLT 699 +L+VV T+ G +R LS++ R G K+A +++R +++ +++++L+ Sbjct: 741 -ADLFVV--TEGGYAKRTALSEYRVQGRGGLGIKVANLVEARGDLVGALVTEEDSEVLVI 797 Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 G+ VR + + GRN+ GV +GD+VI AI L+ D D Sbjct: 798 MAGGKIVRSRVDEVS-RTGRNTQGVIFSRADEGDKVI--AITLNVDND 842 >gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776] gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776] Length = 938 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 346/893 (38%), Positives = 518/893 (58%), Gaps = 25/893 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V+I EM+ SY+TYA++VI+ RA+PD RDGLKP RRIL M + + N VKCA Sbjct: 13 ILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNSGRVKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+ G YHPHG+ +IY L R+AQ+W++R LI+ QGNFGS+ G PPAA RYTE RL Sbjct: 73 KICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMRYTEARL 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A +LDDL +DTVD+ YD +EPVVL +R+PN+LVNG GIAVGMAT+IP HNL Sbjct: 133 SAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATSIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV + ++++P+ +D LME++ GPDFPTG +I GR GI+ Y TGR ++ +R + Sbjct: 193 AEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIICGRYGIRQGYLTGRSTLTLRAKTR 252 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR--QGYRVVIE 313 T + + I VTEIPY + + EK+ +LVR+ +I I+ + D +DR ++V + Sbjct: 253 F-LTEKNTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTPAWQVCLH 311 Query: 314 --LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 LKR A +VILNQL++Y+ LQS FSV ++AL+G +P+ + ++ F+ R V+ R Sbjct: 312 IVLKRDADKEVILNQLFQYSPLQSTFSVILLALSGNRPKTMNIKELIGEFIRHRITVIRR 371 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 +T++ L +AR R H + GL IA N+DEV++ IR S + A +E +Q S + + Sbjct: 372 KTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEA-KERLQAILVPSAM--VA 428 Query: 432 DLIDDSSYT-----IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + D+ + G T LS QT AI+ ++L L L ++ +R E L +I Sbjct: 429 RALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLIEDIFG 488 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 L +LS + + +I++E+ + D+ RRT I E L D++ ED I E MVVT+S Sbjct: 489 YLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTLSQR 548 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+P+ Y+AQ RGG+G G DED + DLFI STH +LFF+ G V+ +KV+ Sbjct: 549 GYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQKVYD 608 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ S ++G+AL+N+LSL +GE++ T + + N Y+V AT+ G V++ L + Sbjct: 609 LPLQSRTSKGRALVNLLSLQEGEQVATCV---NTRTFEENRYLVMATRAGIVKKTSLDAY 665 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + + G IA+ L D ++ + + DILL+T G +RF + R GRN+ GVR Sbjct: 666 KRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAM-GRNTSGVR 724 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-GN 784 GI L K D+VI M + AD + M +R G E +++ E G Sbjct: 725 GIKLRKDDEVIGMVV-----ADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGV 779 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +++E E L E+ + G +SS + G+ D+ I G +V + Sbjct: 780 VADEEIAE-ALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVRDIRVIPRNGKVVKI 838 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + D +++V+ G + RV EI R T+GV + + +RV S+ RI Sbjct: 839 LAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASMARI 891 >gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3] gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3] Length = 892 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 321/734 (43%), Positives = 451/734 (61%), Gaps = 39/734 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M G ++ + KCA Sbjct: 29 VEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRSFNKCA 88 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG+YHPHG+ AIYDAL R+ QDW++R L GQGNFGS D AA RYTE ++ Sbjct: 89 RVVGEVMGQYHPHGDTAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAAPRYTETKM 148 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ ++TVDF+ NYDG QEP +L AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 149 APLAMEMVRDIDEETVDFQDNYDGKNQEPTILPARFPNLLVNGSSGIAVGMATNIPPHNL 208 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG + NP + L+E ++GPDFPTGA ILG GI++AY TGRGS+ +R Sbjct: 209 REVADGVQWYLANPGASREELLEELLLRVKGPDFPTGATILGHKGIEDAYRTGRGSVTMR 268 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V ++E+ G R +VVTE+PYQ N + KIAELV++ +I IADLRDE S R G R+ Sbjct: 269 AVVNVEELQG-RTCLVVTELPYQANPDNLAIKIAELVKDGKIQGIADLRDETSGRTGQRL 327 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQS FS NM+A+ P +L ++ +V + +V+ Sbjct: 328 VIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIVDGVPRTLSLDAFIRHWVTHQMDVIA 387 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA + AH+L L A+ LDEV+ +IR S E AR LM+ L Sbjct: 388 RRTRYRLRKAEEEAHILRALLKALDMLDEVIALIRASNTTEAARDGLME----------L 437 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D + E+Q RAIL+++L RL L R I++ L I E +I Sbjct: 438 LD----------------IDELQARAILDMQLRRLAALERQKIQDRHAELEALIAEYNEI 481 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L S R II EL + D+ RRTRI+ G DM ED I E+MVVT++ GYVK Sbjct: 482 LGSEQRQREIISTELGEIVDKHGDDRRTRILMGFDGDMSMEDLIPEEEMVVTITRGGYVK 541 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R YR+Q+RGGKG G +R +D V F+ +TH +LFF++LG VY+ K + L Sbjct: 542 RTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+++ E I ++ + + + Y+V ATK G V++ +L D+ Sbjct: 602 GRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQA---PYLVLATKRGLVKKTRLEDYDTNR 658 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGI 727 +G IA+ L DE++S + ++ +D+LL ++ GQ +RF + A+R GR + GV G+ Sbjct: 659 SAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTATEDALRPM-GRATSGVTGM 717 Query: 728 SLAKGDQVISMAIV 741 + D++++ +V Sbjct: 718 KFREDDELLAANVV 731 Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 31/280 (11%) Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGK-------IAMKLDSR-DEILSVETCTQENDILL 698 +++F T G V R K + ++ R K +A + D ++L ++ Q ++L Sbjct: 580 WLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQQAPYLVL 639 Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-----ADYDERIC 753 TK G + + + + S GV I+L GD+++S +V D + + I Sbjct: 640 ATKRGLVKK---TRLEDYDTNRSAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIR 696 Query: 754 YMKHMSAQRRLISGDTEEITSLK---NDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810 + A R + T +T +K +D + N+ + F+ V+E G+ K Sbjct: 697 FTATEDALRPMGRA-TSGVTGMKFREDDELLAANVVTDGS--------FVFIVTEGGYAK 747 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 RT+ ++R+ R G GI+ +++ E G LV V + D++++V + G ++R V + Sbjct: 748 RTAVEEYRLQGRGGLGIKVAKLAE--ERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGV 805 Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 R T GV+ K++R++ V R E I E ES E Sbjct: 806 PAKGRDTMGVIFAKPDKNDRIIEVARNSERGIEGE-ESAE 844 Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 16/144 (11%) Query: 761 QRRLISGDTEEITSLKNDS-------SVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 QR +IS + EI D +G++S E +L +E+ ++T++ G+ KRT Sbjct: 488 QREIISTELGEIVDKHGDDRRTRILMGFDGDMSME---DLIPEEEMVVTITRGGYVKRTR 544 Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873 S ++R R GKGI+ +++ + F + ++ ++ G + R E+ A Sbjct: 545 SDNYRSQQRGGKGIKG---AQLRGDDVVEHFFVTTTHHWLLFFTNLGRVYRAKAYELMEA 601 Query: 874 SRATKG---VVIFSTAKDERVVSV 894 R KG + + DE + V Sbjct: 602 GRDAKGQHVANLMAFQPDEHIAQV 625 >gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171] Length = 592 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 299/616 (48%), Positives = 419/616 (68%), Gaps = 27/616 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ ++PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 415 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 416 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ GY+ Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + +P Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576 Query: 609 GSPQARGKALINILSL 624 A+G +IN+L + Sbjct: 577 YGRTAKGIPIINLLGI 592 >gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 554 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/547 (52%), Positives = 385/547 (70%), Gaps = 9/547 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 L IL S RL+ +I++E+ ++D+ RRT I D+ ED I +ED+VVT+SH G Sbjct: 488 LLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQG 547 Query: 547 YVKRVPL 553 YVK PL Sbjct: 548 YVKYQPL 554 >gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] Length = 823 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 339/883 (38%), Positives = 513/883 (58%), Gaps = 99/883 (11%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E+ + + DE+ SYL+Y+++VI+GRAIPD+RDGLKPV RRI++ M ++G+ NK + Sbjct: 17 EQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPF 76 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI GEVMGKYHPHG+++IY+AL RMAQ W +R L+EGQGNFGS+D DPPAA RYT Sbjct: 77 KKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYT 136 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +++D+ K TV N+DGS QEP VL A+ PN+L+NG GIAVGMATNIP Sbjct: 137 EARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIP 196 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 THNL +VVD +A I N DI ++ L++II+GPDFPTG +I+G++GI+ Y TG+G IR Sbjct: 197 THNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMYITGKGGFTIR 256 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 G + I K ++ I++TEIPY ++KA ++++IA+ ++E+ I + DLRDESD+ G RVV Sbjct: 257 GKAEI-KHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEI-PVKDLRDESDKDGLRVV 314 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVV 370 IE +VILN LY+ T+LQ+ F+ N + ++G K P L +++A+V R EVV Sbjct: 315 IEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEVVR 374 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RT+Y + RAH++ GL A +D VV IIR S + A + L Sbjct: 375 KRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEA-------------LSQL 421 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D++ +SE Q +A+L++RL RLT L +++ E L + +++ ++ Sbjct: 422 VDILQ-------------MSEEQAKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKEL 468 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV---EGLLDMEDEDCIVREDMVVTVSHLGY 547 L + ++ +I +EL +K + PR+T I E + +D I +D+V+T++ G+ Sbjct: 469 LMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGF 528 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +K + + +R QRR GKG G + ++D ++ + H+ LFF+SLG VY+ + + Sbjct: 529 LKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIE 588 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---VFATKHGNVRRNKLSD 664 + +GK + + L GER+ ++ + YV F TK G V+R L D Sbjct: 589 ESNRGTKGKPINKYIKLENGERVLAMVDITD--------YVGELFFVTKKGVVKRTSLED 640 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 F I G A+ DE++SV E N +L++TKLG +RF I +R GRN+ G Sbjct: 641 FKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTM-GRNAAG 699 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 VRGI L +GD+VIS T L+ND+ Sbjct: 700 VRGIRLREGDEVISS----------------------------------TVLENDNG--- 722 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +ILT++E G+GK T D+R +R G GI+ ++ +I + G +V Sbjct: 723 ---------------YILTITENGYGKLTEVSDYRKQSRDGLGIK--NIGEIEKTGPIVG 765 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886 V VN +++I+L + G I+ V++I SR +GV + + A Sbjct: 766 VAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLA 808 Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 21/207 (10%) Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYK 600 V+ G VKR L ++ KG + +D D V+ L I S +VL + LG + Sbjct: 627 VTKKGVVKRTSLEDFK--NITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIR 684 Query: 601 ---EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657 E+V + + RG + L +G+ + + D N Y++ T++G Sbjct: 685 FGIEEVRTMGRNAAGVRG------IRLREGDEVISSTVLEND-----NGYILTITENGYG 733 Query: 658 RRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 + ++SD+ + +R G K +++ I+ V + +I+L TK G ++F +S I Sbjct: 734 KLTEVSDYRKQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIP 793 Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIV 741 + R + GV+ ++LA GD V A++ Sbjct: 794 TRS-RTAQGVKVMNLADGDIVADFAVI 819 >gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 827 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 338/892 (37%), Positives = 514/892 (57%), Gaps = 97/892 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V + M+NSY+ YA++VI+ RAIPD+RDGLKPV RR+L+ + +GV +KK KCA Sbjct: 9 VQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPDKKTKKCA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MGKYHPHG+++IY AL M Q WS+R +LI+ QGNFGS DGD PAA RYTE ++ Sbjct: 69 TIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAMRYTEAKM 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +L + KDTVDF PN+ ++EP VL AR+PN+LVNG GIAVGMATNIP HNL Sbjct: 129 SRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMATNIPPHNL 188 Query: 196 GEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV+D +I + + +LD +++ I+GPDFPTGA+ILGR GI+ AY +GRG I +R Sbjct: 189 REVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALILGRRGIEEAYRSGRGKIKMR 248 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRV 310 V IE + +I+V E+PY V ++ ++EK+AELV++K+I I + D + + ++ Sbjct: 249 AVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAGKGSSAKI 308 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 IEL++ A+ +VILNQLY++T LQ F V M+ + +P L +L F+ + VV Sbjct: 309 NIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGEPRILNLQEMLNEFLKHQINVVT 368 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LNK +RAH+L GL A+ ++DE+VRIIR + E A+++L+ R Sbjct: 369 RRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIAR---------- 418 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 S+ Q +AI+++RL LTGL R +++E L I +I Sbjct: 419 ----------------FAFSDAQAQAIVDMRLRALTGLERGRLQSEYEELLRRIARYREI 462 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548 LS + LL +I++EL +K++ RRT+ D ++DED I +D+V++ + LGY+ Sbjct: 463 LSDQRELLSVIREELTQLKEKFGEKRRTQFA---FDDALDDEDLIPDDDIVISSTRLGYI 519 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ +R Q RGGKG G+ D D + DLF+ + H ++ F++ G ++ K + +P Sbjct: 520 KRMSPENFRQQNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKGYEIPE 579 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S +RG AL+N+L L ER+ D SS Y+V ATK G V++ LS + + Sbjct: 580 ASRTSRGTALVNLLKLQPEERVNACFSL-RDLSSEQ--YLVLATKSGLVKKTPLSQYANV 636 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++G IAM + D+++ + +I+L TK G +RF IR GR+++GVRGI Sbjct: 637 RKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRS-TGRSAMGVRGI- 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 RL SGD E+ ++ S Sbjct: 695 ----------------------------------RLDSGD--ELIGMQKLS--------- 709 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSEKG+GK T++ +F+ NR GKG+ +++ + G LV + Sbjct: 710 -------QGGYLLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITE--KTGDLVGFKLCD 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERIR 898 + +I+L++ +G LIR+ + ++ + R T GV K D + S+ ++R Sbjct: 761 QDREIMLITSEGILIRMSLEKVSVIGRNTSGVKFMDLPKNGDTVIASIAKVR 812 >gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] Length = 871 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 338/899 (37%), Positives = 507/899 (56%), Gaps = 95/899 (10%) Query: 10 EEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 EE+E G + + E++ SYL YA++VI+GRA+PD RDGLKPV RR+L+GM+ +G+ N Sbjct: 2 EEQEMGRVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHN 61 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 + Y K AR+ GEVMGKYHPHG+A+IYD + R+AQ W+LR L++GQGNFGSVDGD AA Sbjct: 62 QAYKKSARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAM 121 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE R + +L D+ +DTVD+ PN+D S +EP+ L + PN+LVNG GIAVGMAT Sbjct: 122 RYTEARFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMAT 181 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 N+P HNLGEV+D +ID+P+ +L LM + GPDFPTG +I+GR GI +AY TGRG I Sbjct: 182 NMPPHNLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKI 241 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 ++RG +E+ R +V+TEIPY VNK ++E IA+ V+E I ++DLRDESDRQG Sbjct: 242 IVRGRCVVEEGK-RRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGL 300 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V++L R +++ QLY T +QS F V + L +P L +L+ F+ +R +V Sbjct: 301 RIVLDLNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDV 360 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L KA++R H++ GL A+ +DEV+RIIR + E A L ++ Sbjct: 361 VRRRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ-------- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + SE Q +AIL++RL RLTGL RD + E+ L +I Sbjct: 413 ------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIARYQ 454 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLG 546 +IL+ L G+I+ EL ++ + RRT I + D ED + E++V+T+S G Sbjct: 455 EILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDG 514 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y++R L Y Q RGGKGR G + +ED V + + +TH VL F+S G V+ K + Sbjct: 515 YLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMV 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMP-FPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 P + +G+ + +SL++GE + I+ FP++ S+ VV T+ G +R S+ Sbjct: 575 P-ETKSGKGRKVEQFISLSEGETVVEILGRFPDNCST-----VVLITRRGIAKRMDKSEL 628 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + R+G+ M LD D+I + +D+ L + +G+ +R IR GR++ GV+ Sbjct: 629 QNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTM-GRSARGVK 687 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 + L K D++IS + I+GD+ Sbjct: 688 AMKLGKDDEIISCEV------------------------IAGDSR--------------- 708 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS-KINEIGALVAV 844 IL VS++G GK TS +F + +R+ G RA + + + V Sbjct: 709 --------------ILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVANTV 754 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 FP +D++ L++ G +IR+ V+ I R G ++ + V +V I + ++V Sbjct: 755 FP---DDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLV 810 >gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi DSM 16790] gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi DSM 16790] Length = 856 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 310/715 (43%), Positives = 445/715 (62%), Gaps = 20/715 (2%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + I EM+ SY+ YA++VI GRA+PD RDGLKPVHRRIL+ M Q G+ + K + Sbjct: 19 VETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARSAHRKSS 78 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE MG YHPHG++AIY+ALARMAQD+S+R L++GQGNFGSVDGDPPAA RYTE R+ Sbjct: 79 SIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LLD++ DTV+F NYD EP VL A +PN+LVNG GIAVGM+TNIP HNL Sbjct: 139 SPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + +I +P+ ++ LM ++GPDFPTGA I+G+ I AY TGRG + +R Sbjct: 199 GEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAIYKAYKTGRGRVRVRAEFD 258 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 ++ ++IV+TE+P+Q NKA ++E+IA+ V I I DLRDESDR G RVV+ELK Sbjct: 259 VQD-----DRIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGIRVVVELK 313 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+ D++ NQL + L+S F V +AL +P+ TL L ++ R VV RR++Y Sbjct: 314 RGANPDIVKNQLLEH-HLESTFGVINLALVDGQPQVLTLKETLHEYLEHRRTVVRRRSQY 372 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L++ RDRAH+L G A+ +D+VV IIR S + + A+ L SD + Sbjct: 373 ELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESDERG------ 426 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 S T SE Q I+ ++L LT L D+I +E S+ I+ IL++ Sbjct: 427 ------ESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPD 480 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 L +++ EL +++D+ RRTRI+E + ED I +ED+VV V+ Y+KR+ L Sbjct: 481 ELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQEDVVVVVTEDDYIKRMSLED 540 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 +R+Q RGGKG G ++D D V+ +++ +TH +L+F+S G VY+ K +++P S ARG Sbjct: 541 FRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPEMSRTARG 600 Query: 616 KALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 K+ +N+L L+ GE+IT ++ E D Y T+ G ++R ++ F I +G I Sbjct: 601 KSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGYIKRTSVNSFQNIRSTGII 660 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729 A+ L + D+++ VE DI+L T+ G +RF +R GR++ GV GI L Sbjct: 661 AISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSV-GRSARGVHGIKL 714 >gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246] Length = 883 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 315/745 (42%), Positives = 462/745 (62%), Gaps = 28/745 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I DE+++SYLTYA +VI+ RA+PD+RDGLKP RRIL M +G+ KCA Sbjct: 23 INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 I GE M +YHPHG+A+IYD+L RMAQDW+LR L+ GQGNFGS+ G PPAA RYTE RL Sbjct: 83 GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPPAAHRYTEARL 142 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 AA LL+DL +DTVDF NYDG ++EP+VL ++PN+LVNG GIAVGMAT+IP HNL Sbjct: 143 TPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNL 202 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV V ++DNP L L++II GPDFPTG +I+GR G+ AYA G G I +R + Sbjct: 203 REVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMGRQGLLEAYARGAGKITLRARAQ 262 Query: 256 I-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG--YRVV 311 + E+ G I+++E+P+QV + A++E+IA LV+E+RI D++ +RDES R G R++ Sbjct: 263 VMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLI 322 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 +E+KRG ++LNQLY+YT LQ S+ M+AL +P TL +L+ F+ R V+ R Sbjct: 323 VEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRR 382 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE---------LMQRSW 422 RT++LL +A+ R HVL G IA+A++++V++I R SPN A+ LMQR+ Sbjct: 383 RTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRAI 442 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 L +G+ ++E Q A++ LRL +L L ++I E L Sbjct: 443 GEGAFAAL-------QRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRE 495 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 I+ +LS + + +I+++L + + R+T + + D++ ED IV E VVT+ Sbjct: 496 LIRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNVVTI 555 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 SH G+VKR+ L+ YR Q R G +RD DFV F+ ST +L F++ G +Y K Sbjct: 556 SHEGFVKRMALTEYRVQGR-GGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLK 614 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 V+R+P + G+A+ N+LSL +GE+I++I+P E +++ AT+ G V++ L Sbjct: 615 VYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVRE---FVEGAHLLMATRQGTVKKTDL 671 Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + + G I + LD DE+++V ++++L+T+ G +RF SAIR GR + Sbjct: 672 MAYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIRFRESAIRPM-GRTAR 730 Query: 723 GVRGISLAKGDQVISMAIVLHADAD 747 GVRGI L K D ++ M + AD D Sbjct: 731 GVRGIKLGKDDALVGMVV---ADPD 752 >gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine microorganism HF4000_APKG8D23] Length = 898 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 345/915 (37%), Positives = 506/915 (55%), Gaps = 88/915 (9%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I+DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+GM Q G +K Y K AR GE Sbjct: 10 ISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGYSKSARSVGE 69 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 VMGKYHPHG+ A+YD + RMAQD+SLR LI+GQGNFGS+DGDPPAA RYTE RL + + Sbjct: 70 VMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYTESRLDRLSQ 129 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +LDD+ KDT+D PN+D + EP VL AR PN+L+NG GIAVGMAT IP HNL EV Sbjct: 130 HMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIPPHNLNEVAA 189 Query: 201 GC-------------VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 + + + P ID ME ++GPDFPTGA I G GI + Y TG G Sbjct: 190 AIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGILDMYRTGNGR 249 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 IR +++ S + ++VV IPYQV KA ML+ IAELVR+ I I D+RDES ++G Sbjct: 250 FQIRSDVEVQEDSRGK-RLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIRDIRDESSKEG 308 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 RVVIE+K+ A +LNQLY+ + LQ +S NM+ + +P + L IL +V RE Sbjct: 309 IRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTILHTYVRHRES 368 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 VV RRT++ +KA RAH+L GL A + E++ + R S + R+ ++ + Sbjct: 369 VVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDS-----RDQFEQYLRGDEK 423 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487 I D S+ Q +AI E RL +LT L ++ +EL L IK+ Sbjct: 424 YPKIRRFD-------------FSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDY 470 Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547 +IL SR R L II EL V D RR+RI L M+ ED + + +V++++ Y Sbjct: 471 QNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDREDLVAEQAIVISLTRDNY 530 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 ++ +P+ +R Q RGGKG GVV ++ED + + + +L F+ +G VY + W P Sbjct: 531 IRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETP 590 Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDE-SSWNNLYVVFATKHGNVRRNKLSDF 665 S RG + N+L+ + E++ +I+P + Y++FAT +G +++++LS++ Sbjct: 591 SASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEY 650 Query: 666 IQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRF--------------- 708 ++INR+GK A++ D ++SV T + ++L + G RF Sbjct: 651 VKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSGE 710 Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH--MSAQRRL 764 +RV GR S GV G+ L KGDQVI M + D+D + + M+ + RL Sbjct: 711 TITTHVVRV-QGRVSQGVSGMKLRKGDQVIGMIVT----DDFDTSVLTISRYGMAKRSRL 765 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 SG+ + + L +DS + V ++ G +R +NR Sbjct: 766 GSGEMKPV--LDDDS---------------------MPVLDEDGGLVQQRDGYRRTNRGT 802 Query: 825 KGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIR-IASRATKGVVI 882 +G+R + + I V+V V D +DQ+ +++ G +IR+ + + + TKG I Sbjct: 803 RGVRTMSLRDGDHI---VSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTKGTRI 859 Query: 883 FSTAKDERVVSVERI 897 +R V+ I Sbjct: 860 MELRNADRTGYVDEI 874 >gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola] Length = 611 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/630 (45%), Positives = 415/630 (65%), Gaps = 28/630 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 7 KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RY Sbjct: 67 TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMATN+ Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++ Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G R Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R +VV Sbjct: 307 VVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S +P+TA+ LM+R Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER--------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G D +VQ +AI++++L RLT L +D+R EL L + I D Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLGY+ Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE 638 S +RG + ++LS++ E IT ++ E Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 752 ICYMKHMSAQRR----LISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTV 803 I ++K + A LI +T EI D V + E ++L KE+ ++ + Sbjct: 455 IAHLKDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILI 514 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 S G+ KR + ++ NR GKG + +++ E L +F + +D I+ +++ G Sbjct: 515 SHLGYIKRIPATAYKSQNRGGKGSNSVNLA---EDDFLDQIFTASTHDYIMFITNAGKAY 571 Query: 864 RVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 + V+EI+ ASR ++G I S + DE + +V ++E Sbjct: 572 WLKVHEIQEASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610 >gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271] gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271] Length = 717 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 317/748 (42%), Positives = 457/748 (61%), Gaps = 70/748 (9%) Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226 + + PN+LVNG GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFP Sbjct: 1 MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60 Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIA 285 T A+I GR GI+ AY TGRG + IR + +E RE I+V EIPYQVNKA ++EKIA Sbjct: 61 TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIA 120 Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345 ELV+EKR+ I+ LRDESD+ G R+VIE+KR A +V+LN LY T LQ F +NMVAL+ Sbjct: 121 ELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH 180 Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405 +P+ L I+ AFV R EVV RRT + L KARDRAH+L LA+A+AN+D ++ +IR Sbjct: 181 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 240 Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMYLSEVQTRAI 457 +P P A+ L+ W ++ +++ D + G DG YL+E Q +AI Sbjct: 241 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 300 Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517 L+LRL +LTGL + + +E L +I E L IL S RL+ +I++EL V+++ RR Sbjct: 301 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 360 Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577 T I D+ ED I +ED+VVT+SH GYVK PLS Y AQRRGGKG+S +++EDF+ Sbjct: 361 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 420 Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637 L + +TH +L FSS G VY KV++LP + ARG+ ++N+L L Q ERIT I+P Sbjct: 421 DRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT 480 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697 E E + V AT +G V++ L++F ++ +GK+A+KL DE++ V+ + E++++ Sbjct: 481 EFEEG---VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 537 Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757 L + G+ VRF S++R G N+ GVRGI L +GD+V+S+ + Sbjct: 538 LFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVP---------------- 580 Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 GD +T+ +N G+GKRT+ ++ Sbjct: 581 --------RGDGAILTATQN-----------------------------GYGKRTAVAEY 603 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 +R+ KG+ + V++ N G +V V+D DQI++++D GTL+R V+EI I R T Sbjct: 604 PTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 661 Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDE 905 +GV++ TA+DE VV ++R+ +E VDE Sbjct: 662 QGVILIRTAEDENVVGLQRV--AEPVDE 687 >gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] Length = 858 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 311/743 (41%), Positives = 447/743 (60%), Gaps = 41/743 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + V + EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M G N Sbjct: 22 EVEASRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNG 81 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KCAR+ G+V+G +HPHG++++YDALAR+ Q WS+R L+ GQGNFGS PAA+R Sbjct: 82 GFSKCARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQR 141 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTEC++ A ++ D+ +DTVDF NYDG QEP VL +R PN+L+NG GIAVGMAT Sbjct: 142 YTECKMAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 201 Query: 190 IPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 IP HNL E+ D + ++NP+ L+A M+ I+GPDFPTGA ILGR GI++ Y TGR Sbjct: 202 IPPHNLREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 261 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304 GSIV R V ++E+ G R +V TE+PYQVN +L KIA+L ++ ++ IAD+RDE SD Sbjct: 262 GSIVQRAVVNVEELHG-RTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 320 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+V+ LKR A V+LN LY+ T LQ F NM+AL P +L G + +V Sbjct: 321 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 380 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + V+ RRT++ L KA++R H+L G A+ LDEV+ +IR SP E AR LM Sbjct: 381 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 434 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL+ + EVQ AIL L+L RL L R I +E L ++ Sbjct: 435 ----DLLS----------------VDEVQADAILALQLRRLAALERQKILDEHAELEAKV 474 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R I+ EL + ++ R+T IV +M ED I EDMVVT++ Sbjct: 475 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 534 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G+ KR + YR+QRRGGKG G +R++D V F S+H +LFF++ G VY+ K + Sbjct: 535 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 594 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P G ++G+ + N+L+ ERI ++ S + Y+V ATK G V++ L+D Sbjct: 595 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHI---SSFEDKEYLVLATKRGFVKKTHLTD 651 Query: 665 FIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718 + G IA+KL D+++S D++L ++ GQ +RF S ++ G Sbjct: 652 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 711 Query: 719 RNSVGVRGISLAKGDQVISMAIV 741 R++ GV G+ D++++M +V Sbjct: 712 RSTSGVTGMRFRDDDELLTMDVV 734 Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 9/147 (6%) Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 QR ++S + EI + D +++ E ++L +E ++T++ GF KRT + Sbjct: 487 QRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAY 546 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R R GKG++ + + +++ F + +D I+ ++ G + R EI R + Sbjct: 547 RSQRRGGKGVKGAQLREDDQVEHF---FTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDS 603 Query: 878 KG---VVIFSTAKDERVVSVERIRESE 901 KG + + +ER+ V I E Sbjct: 604 KGQHVANLLAFQPEERIAQVLHISSFE 630 >gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 816 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 358/887 (40%), Positives = 507/887 (57%), Gaps = 94/887 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + +EM+ S+L Y+++VI+ RA+PD RDGLKPVHRRIL+ M G ++ +VKCA++ Sbjct: 15 IELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKCAKVV 74 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP-PAAERYTECRLQK 137 G+VM ++HPHG+AAIYDAL RMAQD+SL LI+G GNFGS D PAA RYTECRL Sbjct: 75 GDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTECRLAP 134 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A LL + +DTVDF PNYD EP VL AR+PN+LVNG GIAVGMAT IP+HNLGE Sbjct: 135 IALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSHNLGE 194 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 VVD +ID+P+ +D LM + GPDFPTG +ILGR GI++AY TGRGS+ +R V+ IE Sbjct: 195 VVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRTGRGSVKLRAVATIE 254 Query: 258 KT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316 + SG QIVVTEIP+Q + + +KI LV EK + I D+++ S R VIELKR Sbjct: 255 EARSG--YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRFVIELKR 312 Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376 A+ +V+LN LYR T LQ+ F + M+AL P L+G+ + +V + EV+ RR+++ Sbjct: 313 DANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVDHQREVIRRRSEFR 372 Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436 L KAR+R H++ GL + LD V+ IR S + AR LM + Sbjct: 373 LGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFG------------- 419 Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496 SE+Q IL++ L RLT LGR+++ E +L I E IL+ R Sbjct: 420 ------------FSELQANHILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQR 467 Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 L ++K E+L+ E RRTR D ED I E +VV +S GY+K VP S + Sbjct: 468 LSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLISRSGYIKAVPESSF 527 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 +AQ RGG+G G ++DED + + S + +L FSS G VY+ + + LP ARG Sbjct: 528 KAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGT 587 Query: 617 ALINILSLNQGERITTIM---PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 AL+N++ L ERIT++M FPED +VF T++G V+R ++++ + R G Sbjct: 588 ALVNLVPLADDERITSVMGTKDFPEDAD------LVFFTRNGMVKRTAMAEYARSRRDGI 641 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 IA+ + DE++SV T+E+D ++ TK GQ +RFP++ +R GR + GVR I A GD Sbjct: 642 IAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVR-RTGRATAGVRSIRRADGD 700 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 +++ G + E+ + Sbjct: 701 WIVA---------------------------------------------GGLIEDGVE-- 713 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 +L V+ +G+GKRT F + +R G GIR +++ G LVA V D++ Sbjct: 714 ------VLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERK--GELVAAAFVRPEDEV 765 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900 ++VS +G +IRV + +I R GV + S +E V SV + ES Sbjct: 766 LIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPES 812 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 33/214 (15%) Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G VKR ++ Y RR G + +R D++ V+ + H V+F + +V Sbjct: 623 GMVKRTAMAEYARSRRDGI--IAIDVRGDDELVSVVVATEEHDGVVF------TKRGQVL 674 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW--------NNLYVVFATKHGN 656 R P+ + G+A + S+ + + W + + V+ T G Sbjct: 675 RFPLAEVRRTGRATAGVRSIRRAD------------GDWIVAGGLIEDGVEVLLVTSRGY 722 Query: 657 VRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 +R L F +R G + + + E+++ E+++L+ + GQ +R I I Sbjct: 723 GKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAAAFVRPEDEVLIVSSQGQMIRVRIGDI 782 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 GR + GV+ ISL + V S+ +V + D Sbjct: 783 S-NQGRYATGVKLISLQAEESVASVGVVPESGTD 815 >gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola] Length = 611 Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust. Identities = 283/630 (44%), Positives = 414/630 (65%), Gaps = 28/630 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+ + Sbjct: 7 KEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGP 66 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR +I QGNFG++ GDPPAA RY Sbjct: 67 TRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAYRY 126 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ K A +++D+ K+TVDF PN+D S +EP VL A++P +L NG GIAVGMATN+ Sbjct: 127 TEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNM 186 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL E+ D A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I++ Sbjct: 187 PPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKILV 246 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309 RG IE +E IV TE+PYQVN ++ +I EL REK I IA++ DE SDR G R Sbjct: 247 RGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKRGA V+LNQL+ T+LQS F V +AL +PE L ++K FV R +VV Sbjct: 307 IVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVDVV 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRTK+ L KA +RAH+L L +A+ N+DEV++IIR S + +TA+ LM+R Sbjct: 367 TRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMER--------- 417 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 G D +VQ +AI++++L RLT L +D+R EL L + I D Sbjct: 418 -----------FGFD------DVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHLKD 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+ ++L +IK+E + ++ R+T IV + + ++ ED I +E+MV+ +SHLGY+ Sbjct: 461 LLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+P + Y++Q RGGKG + V + ++DF+ +F STH ++F ++ G Y KV + Sbjct: 521 KRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQE 580 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE 638 S +RG + ++LS++ E IT ++ E Sbjct: 581 ASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 752 ICYMKHMSAQRR----LISGDTEEITSLKNDSS----VEGNISEERCQELKLKEQFILTV 803 I ++K + A LI +T EI D V + E ++L KE+ ++ + Sbjct: 455 IAHLKDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILI 514 Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863 S G+ KR + ++ NR GKG + +++ E L +F + +D I+ +++ G Sbjct: 515 SHLGYIKRIPATAYKSQNRGGKGSNSVNLA---EDDFLDQIFTASTHDYIMFITNAGKAY 571 Query: 864 RVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRE 899 + V+EI+ ASR ++G I S + DE + +V ++E Sbjct: 572 WLKVHEIQEASRTSRGSHIKSLLSVSSDEEITAVVSLKE 610 >gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1] gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1] Length = 836 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 322/884 (36%), Positives = 495/884 (55%), Gaps = 88/884 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 +T + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM +G++ N+ Y K A Sbjct: 11 VTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKSA 70 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GE MGKYHPHG++AIY+ + R+AQ+WS+R L++GQGNFGS+DGD AA RYTE R Sbjct: 71 RVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRYTEARF 130 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + +L D+ +DTVD+ PN+D S +EP+ L + PN+L+NG GIAVGMATN+ HNL Sbjct: 131 AETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPHNL 190 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEVVD +I PD +LD LM + GPDFPTG +I+GR GI +AY TGRG I++RG H Sbjct: 191 GEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGRGKIILRGKCH 250 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +E+ S + +V+TEIPY +NK ++E I + V+ K+I ++D+RDESDR+G R+V+EL Sbjct: 251 VEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVVELT 310 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A A+++ QLY TSLQS F + +AL KP L +L+ F+ +R VV RRT++ Sbjct: 311 READAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYRRSVVRRRTQF 370 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA R H++ GL A+ +D+V+ IIR + + A+ L+ Sbjct: 371 RLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLI----------------- 413 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 G + +++Q +AIL++RL RLTGL R+ + EL L +I+ IL + S Sbjct: 414 ---------GELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPS 464 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPL 553 L G+I EL ++ + RRT + L D ED + ED++VT+S G+++R PL Sbjct: 465 VLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPL 524 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y Q RGGKGR G V++D+D V + + STH+ + F+S G V+ + +P + Sbjct: 525 ENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIP-ETKTG 583 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 +G+A+ +SL ER+ + E+ ++ +++F TK G +R + + R+G+ Sbjct: 584 KGRAVSKFVSLTDDERVVAMRGTLEETATS---HLLFITKRGIGKRMDAEELENLTRAGR 640 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 + LD DEI ++ + +LL T + S R GR + GV+ + LA D Sbjct: 641 RVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPM-GRAARGVKAMKLAPDD 699 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793 ++I+ V DE + + +R Sbjct: 700 RIIAAWTVAP-----DENLLLVSETGIGKR------------------------------ 724 Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 T +F I +R G++A + G L A V +D++ Sbjct: 725 ------------------TKPEEFPIHHRGSGGVQAMHLGA--RTGRLAAAVGVASSDEV 764 Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 L+++KG +IR+ ++I + SR G ++ + + SV I Sbjct: 765 GLMTEKGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVI 808 Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/256 (22%), Positives = 102/256 (39%), Gaps = 56/256 (21%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 +V +K G +RR+ L ++ NR GK + L DE+ + + +DI L T G Sbjct: 510 LVTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRG-- 567 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 RVFA +RG + + A+ DER+ M+ Sbjct: 568 --------RVFA------IRGHMIPETKTGKGRAVSKFVSLTDDERVVAMR--------- 604 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 G EE + +L ++++G GKR + + R+G+ Sbjct: 605 -GTLEETAT-----------------------SHLLFITKRGIGKRMDAEELENLTRAGR 640 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 + + D +EI A++ + N +++LV+ K V +E R RA +GV Sbjct: 641 RVLSLDDG--DEIAAIIDT---DGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKL 695 Query: 886 AKDERVVSVERIRESE 901 A D+R+++ + E Sbjct: 696 APDDRIIAAWTVAPDE 711 >gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642] gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642] Length = 775 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 330/862 (38%), Positives = 488/862 (56%), Gaps = 104/862 (12%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+ N+ Y K ARI G+ Sbjct: 7 IAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVGD 66 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+AA+Y+AL RMAQD+++R LI+GQGNFGS+DGD PAA RYTE RL K A Sbjct: 67 VLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIAE 126 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDTVDF PN+D + +EP VL A +PN+L NG GIAVGMATNIP HNL E+ D Sbjct: 127 EMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREICD 186 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 V I NPD+ + LM+ ++GPDFPTG +I+G GI AY TGRG I++RG E + Sbjct: 187 AIVEYIRNPDVTVRELMKHVKGPDFPTGGIIVGVEGIIKAYETGRGRIILRGKVEFEDNA 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 I++ E+PY V K+ ++EKIA LV+E ++ ++ +RDESDR+G RVV+ELK G Sbjct: 247 -----IIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGVDK 301 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 +++L +LY YT LQ +S+ ++AL +P+ TL ++ +V R EVV RRT Y L KA Sbjct: 302 NLVLKKLYLYTPLQITYSIMLLALVNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEKA 361 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +R HVL G I ++NLDE + +IR S +P A+ +L+ R Sbjct: 362 EERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINR-------------------- 401 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LSE Q A+L++RL +LT + D I E L +IKE ILSS+ ++ I Sbjct: 402 ------FSLSEKQADAVLQMRLQKLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDEI 455 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I +EL +K RRT+IVE ++ + D I E+ V+ ++ GY KR+ S +R QR Sbjct: 456 IIKELEEIKKNYGDDRRTKIVEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRVQR 515 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG G SG+ +RD D+ + V + +L F+ G + + +P +G +L Sbjct: 516 RGGVGTSGISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKR 575 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 L + + I I+PF + VV T+ G +++ +++F RSG +A S Sbjct: 576 FLRIE--DEIVGIVPFGKGS-------VVILTESGYIKKVNIAEFENAKRSGILA----S 622 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 + + V+ + ++++ T+ G+ VRF + + RN+ GV+ +SL Sbjct: 623 PESVAFVKKLDGK-EVIIATENGRLVRFKAEEVPEYK-RNARGVKAVSL----------- 669 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 D D +I +M S E I Sbjct: 670 ----DGD---KIAWMDVGS-------------------------------------EDLI 685 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LT++E G+GK T + +FR++ R KG+ A K+NE + +D+++++S G Sbjct: 686 LTLTENGYGKMTKTEEFRLTGRGAKGVTA---HKVNEKTGKLVFAEFVKSDKLMVISKDG 742 Query: 861 TLIRVPVNEIRIASRATKGVVI 882 +I V +I + R GV + Sbjct: 743 NVIVVETKQIPVMGRNAVGVAV 764 Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 28/219 (12%) Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 ++ +EI V+T E ++L+ TK G R S RV R VG GISL GD Sbjct: 476 VEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRV-QRRGGVGTSGISLRDGDYAAY 534 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-------NISEERC 790 + V D RI + + S + EI K + S +G I +E Sbjct: 535 IVKVRSLD-----RILL---FTKDGKAFSINAYEIP--KQERSGKGVSLKRFLRIEDEIV 584 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + + ++ ++E G+ K+ + +F + RS GI A+ S VA D Sbjct: 585 GIVPFGKGSVVILTESGYIKKVNIAEFENAKRS--GILASPES--------VAFVKKLDG 634 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 ++I+ ++ G L+R E+ R +GV S D+ Sbjct: 635 KEVIIATENGRLVRFKAEEVPEYKRNARGVKAVSLDGDK 673 >gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1] gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris ATCC 35239] gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16] gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1] gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris ATCC 35239] gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16] Length = 857 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 312/743 (41%), Positives = 444/743 (59%), Gaps = 41/743 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E E + V + EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M G N Sbjct: 21 EAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 80 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + KC R+ G+V+G +HPHG+A++YDALAR+ Q WS+R L+ GQGNFGS PAA R Sbjct: 81 GFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 140 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTEC++ A ++ D+ +DTVDF NYDG QEP VL +R PN+L+NG GIAVGMAT Sbjct: 141 YTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 200 Query: 190 IPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 IP HNL EV D +++P+ L+A M+ I+GPDFPTGA ILGR GI++ Y TGR Sbjct: 201 IPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 260 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304 GSIV R V ++E+ G R +V TE+PYQVN +L KIA+L ++ ++ IAD+RDE SD Sbjct: 261 GSIVQRAVVNVEELHG-RTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 319 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R G R+V+ LKR A V+LN LY+ T LQ F NM+AL P +L G + +V Sbjct: 320 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 379 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 + V+ RRT++ L KA++R H+L G A+ LDEV+ +IR SP E AR LM Sbjct: 380 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 433 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 DL+ + EVQ AIL L+L RL L R I +E L ++ Sbjct: 434 ----DLLS----------------VDEVQADAILALQLRRLAALERQKILDEHAELEAKV 473 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + DIL+ R I+ EL + ++ R+T IV +M ED I EDMVVT++ Sbjct: 474 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 533 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G+ KR + YR+QRRGGKG G +R++D V F S+H +LFF++ G VY+ K + Sbjct: 534 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 593 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P G ++G+ + N+L+ ERI ++ S + Y+V ATK G V++ L+D Sbjct: 594 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHI---SSFEDKEYLVLATKRGFVKKTHLTD 650 Query: 665 FIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-G 718 + G IA+KL D+++S D++L ++ GQ +RF S ++ G Sbjct: 651 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPMG 710 Query: 719 RNSVGVRGISLAKGDQVISMAIV 741 R++ GV G+ D++++M +V Sbjct: 711 RSTSGVTGMRFRDDDELLTMDVV 733 Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 9/147 (6%) Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 QR ++S + EI + D +++ E ++L +E ++T++ GF KRT + Sbjct: 486 QRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITRGGFAKRTRVDAY 545 Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877 R R GKG++ + + +++ F + +D I+ ++ G + R EI R + Sbjct: 546 RSQRRGGKGVKGAQLREDDQVEHF---FTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDS 602 Query: 878 KG---VVIFSTAKDERVVSVERIRESE 901 KG + + +ER+ V I E Sbjct: 603 KGQHVANLLAFQPEERIAQVLHISSFE 629 >gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii] gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii] Length = 877 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 315/892 (35%), Positives = 498/892 (55%), Gaps = 87/892 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + EM SY+ YA++VI GRA+PD+RDG+KPVHRRILF M ++G+ + + KCA Sbjct: 59 IITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAMNELGLNPDTPFRKCA 118 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R +LI G GNFGS+D DPPAA RYTEC++ Sbjct: 119 RVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSIDHDPPAAMRYTECKI 178 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 K + LL D+GK T D+ N+DGS EP VL + P +L+NG GIAVGMATNIP HN Sbjct: 179 SKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGSSGIAVGMATNIPPHN 238 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L E++ +I+ P + L+++I PDFPTG ILG G Y G+GSI++RG + Sbjct: 239 LTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSILGLQGCSKLYKNGQGSIIVRGKT 298 Query: 255 HIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 H E +R I++TE+P+Q+NKA+++ KIAELV EK + I DLRDESDR G R+ Sbjct: 299 HFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDGIVDLRDESDRNGIRI 358 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ + +VILN L++ T LQ+ F +++AL G +P +L +L F+ FR++ + Sbjct: 359 VIELKKDTNKEVILNNLFKKTPLQTSFGGHILALVGQQPATLSLKELLLLFIQFRKKTIR 418 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ LN + ++ H++ GL + + +++ +++++R S N A+ LM+ Sbjct: 419 RRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKIILMESG--------- 469 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L++ Q+ AIL ++L RLT L + + NE L IK Sbjct: 470 ------------------LTQNQSDAILNIQLRRLTRLESNKLNNEYEILNNTIKNLKKP 511 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L+ L IK++L + PRRT +V E +++ + I +V V+ ++ Sbjct: 512 LALPEELSKNIKKDLFEISILFGMPRRTNVVHSETSGSIDEMEMIDNHATIVMVTKF-FI 570 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + + Q RG +G+ GV+++++D ++ F + H ++L S G + + +++PI Sbjct: 571 KRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNNHDTILCISQNGIAFAFRAYQIPI 630 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 A+G AL +L +I++I+P S Y++ TK+G +++ L F I Sbjct: 631 SRRTAKGVALSAVLPNITTGKISSIIPVSVFSSEK---YLILLTKNGMIKKTPLIAFKNI 687 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 G +K+ DE+ V C+ E+ IL++TK G+ +RF + ++ A GRNS GV+ I Sbjct: 688 TARGLTVLKVGEEDELCWVRKCSLEDSILISTKNGKALRFLTNEKQLRATGRNSKGVKSI 747 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 ++ K D +I M ++ + + + CY Sbjct: 748 TIEKNDTIIDMDVLSTSKTKHQD--CY--------------------------------- 772 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 IL +++ GFGK+ + DFRI NR GKG+ + K + L F V Sbjct: 773 ------------ILAITKNGFGKKINHSDFRIQNRGGKGVTVIKLQKKDNDELLSLRFCV 820 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + +I++ + GT++R + I I + +GV++ + + V V I E Sbjct: 821 KE-QEILMSTKNGTILRQKIEAITIQKKNARGVIVQKLMEGDYVSKVSLISE 871 >gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595] Length = 854 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 332/908 (36%), Positives = 512/908 (56%), Gaps = 100/908 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M G + + K Sbjct: 13 IKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDGGYRPDSSFSKSV 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 +I G+VMG +HPHG+AAIYD + R+ Q W++R L+ GQGNFG+ AA RYTE R+ Sbjct: 73 KIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDLGAAAPRYTEARM 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A ++ D+ ++TVDF PN+DGS QEP VL AR+PN+LVNG GIAVGMAT IP HNL Sbjct: 133 AQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIAVGMATRIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G +DNP+ LDAL+E ++GPDFPTGA ILG GI++ Y TG GSI R Sbjct: 193 REVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTKGIESMYRTGNGSITQR 252 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310 + +++ +G R+ +VVT++P+QVN +L+K+ E +++ R+ IAD+RDES R G R+ Sbjct: 253 AIVEVDEING-RQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIADIRDESSGRAGQRI 311 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LK+ A A V+LN LY++T +Q+ F NM+AL P +L G ++ +V + EV+ Sbjct: 312 VIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDGVPRTLSLDGFVRHWVNHQIEVIR 371 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT++ L K +R +L GL A+ LDEV+ +IR SP + AR LM+ Sbjct: 372 RRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREGLMK----------- 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D ++E+Q IL ++L RL L R I +E + + DI Sbjct: 421 --LLD-------------INEIQADHILAMQLRRLAALERQKILDERDEKLALRDDYQDI 465 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ R I+ E+ + + RRT+I+ ++ DED I +D+VVT++ G+VKR Sbjct: 466 LAKPERQRTIVSDEVGDIVAKFGDDRRTKILPFDGEVSDEDLIPEDDVVVTITRSGFVKR 525 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 +S YRAQ RGGKG G +RD+D V + STH LFF+++G VY+ K + LP G+ Sbjct: 526 TKVSEYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNMGRVYRIKGYELPEGA 585 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L+ ERI +++ S++ Y+V AT+ G V++ +L+D+ Sbjct: 586 RDAKGQHIANLLAFQPDERIASMVSI----RSYDQADYLVLATEDGLVKKTRLADYDSAR 641 Query: 670 RSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722 G IA+KL R D ++S D+LL ++ GQ +RF + +R GR + Sbjct: 642 TGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTADDATLRPM-GRATS 700 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV G+ +GD +R+ M Sbjct: 701 GVTGMKF-RGD----------------DRLLAM--------------------------- 716 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 ++ +E + + V+E G+ KRT +R+ R+G GI+ +V + G LV Sbjct: 717 -DVVDEGAE--------VFVVTEGGYAKRTDIEQYRVQGRAGLGIKVANV--VEARGDLV 765 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 + D+++++ + G ++R V+E+ + R T+GV + K ++++S+ E + Sbjct: 766 GALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKGDKIISIALNLEKQE 825 Query: 903 VDEAESTE 910 DE +T+ Sbjct: 826 DDEEVTTD 833 >gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] Length = 838 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 333/915 (36%), Positives = 506/915 (55%), Gaps = 121/915 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID+PD+ + L+E+I GPDFPTG I+G GIK AY TG+G I++RGV Sbjct: 193 LGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIILRGVV 252 Query: 255 HIE---KTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E T G R + I+VTE+PYQVNKA +EK+A+LV + R+ I+DLRDESDRQG R Sbjct: 253 SLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDRQGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+ + ++ QLY T+LQ+ F ++AL +P + +L +L+ F+ FRE+ + Sbjct: 313 VVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFREDTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA +RA ++ GL A+ +DEV+ I+R SP+ TA+ L Q+ Sbjct: 373 NRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L+E Q AIL + L RLT L R +++ E + L +I Sbjct: 424 -----------------LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRR 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------EDEDCIVR- 535 +L R LL +K++L ++K + RRT+++ G + + E E + Sbjct: 467 LLEDRRELLKSLKKDLRTIKRKYGDTRRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQ 526 Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E ++ +H GYV+R+ +A ++ +M D DF+ I +TH +L Sbjct: 527 EEQPPEPAILEFTHRGYVRRLAPGSKKA-------KAETIMGDNDFLIQTEITNTHQDLL 579 Query: 591 FFSSLGFVYKEKVWRL-PIGSPQARGKALINILS-LNQG--ERITTIMPFPEDESSWNNL 646 ++ G VY KV + PI RG LI +L+ QG E I PE + + + Sbjct: 580 ILNTSGKVYPAKVGDISPISPRSPRGIPLITLLTNTAQGNVEGILGRFTLPETKDTHD-- 637 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 +V TK G ++R L + +++ G +K+ D++ + ++++L + G+C+ Sbjct: 638 -MVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCL 696 Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 RF I+ ++ GR ++G++ + K Q+I Sbjct: 697 RFAINDDQLPVMGRGAMGLQSFRILKSQQIIG---------------------------- 728 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 C + +E +L V+++G+ K+ SS R NR Sbjct: 729 ------------------------CVAIGQEENLLL-VTQEGYAKKISSSSLRAGNRGDL 763 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 G + N+ LVA+ N + ++ LV++K +I+ + I I R +G I Sbjct: 764 GTQMLKFH--NKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPILDRDARGENILPM 821 Query: 886 AKDERVVSVERIRES 900 +DE + SV + E+ Sbjct: 822 TRDEIITSVVLVLET 836 >gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus] gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus] Length = 886 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 344/897 (38%), Positives = 506/897 (56%), Gaps = 96/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M G ++ + K A Sbjct: 56 IEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFFKSA 115 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG++HPHG+++IYDAL R+ Q WSLR L GQGNFGS D AA RYTE ++ Sbjct: 116 RVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTETKM 175 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+ NYDG EP +L +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 176 APLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPPHNL 235 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++ +PD + + L+E I+GPDFPTGA +LG GI AY TGRGSI +R Sbjct: 236 REVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSITMR 295 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R +VVTE+PYQVN + KIAELV++ ++ +AD+RDE S R G R+ Sbjct: 296 AVVAVEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSGRTGQRL 354 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+A+ P L G + A+V + +V+V Sbjct: 355 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQIDVIV 414 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN+A RAH+L G A+ LD+V+ +IR S E AR LM+ Sbjct: 415 RRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK----------- 463 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + E+Q AILE++L RL L R I+++ L I E I Sbjct: 464 --LLD-------------IDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYKHI 508 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L++ + II EL + D+ RRT I+ G DM ED I E+MVVTV+ GY+K Sbjct: 509 LATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYIK 568 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + YR+Q RGGKG G +R +D V F+ +TH +LF + G VY+ K + L Sbjct: 569 RTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEA 628 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L++ E I ++ + + + Y+V AT+ G +++ L+++ Sbjct: 629 GRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYDTNR 685 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 G IA+ L D ++S +++D+LL ++ G +RF A+R GR++ GV+G+ Sbjct: 686 TGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGVKGM 744 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D ++S +SV G Sbjct: 745 TFRGDDTLLS-----------------------------------------ASVVG---- 759 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846 ++ ++ V+E GF KRT++ +R+ NR G GI+ V+K+ + G L Sbjct: 760 --------EQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIK---VAKLQDARGDLAGALI 808 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V + D+I++V G ++R V E+ R T GVV A D+R++S+ + E +V Sbjct: 809 VGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 865 >gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2] Length = 788 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 337/834 (40%), Positives = 478/834 (57%), Gaps = 94/834 (11%) Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 CA + GEV+ YHPHG++++YD L R+AQ W +R LI+ QGNFGSVDGD AA RYTEC Sbjct: 1 CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 RL+ A LL D+ +DTVDF PNY+ S EP VL + PN+L+NG GIAVGM TNIP H Sbjct: 61 RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL E++ VAV+DNP LD L +II+GPDFPTG VI GR GI + TGRG + +RG Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIAGRDGIDSYLRTGRGIVRMRGR 180 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + E+T EQI++TEIPY VN+A ++ +IAELV EK+I I D+RDESD + R+VIE Sbjct: 181 AITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESD-ENTRIVIE 239 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LKRG + ILNQLY+ T+L+S F V ++AL+ +P++ + +L ++ R +V+ RRT Sbjct: 240 LKRGEQSSPILNQLYQKTALESSFGVILLALDKRRPKQMNIRELLDCYIDHRRDVITRRT 299 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 ++ L +A DRAH+L G IA+ NLD+ VRIIR S + + A+ +LM + Sbjct: 300 RFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAK------------- 346 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 LSE QT +ILELRL +LTGL RD I E L I+E IL + Sbjct: 347 -------------YPLSERQTDSILELRLYQLTGLERDKIEAEYLELLKLIEELKVILEN 393 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 RL +IK+ELL +K++ R+T I L D ED I E V+TVSHLG++KR P Sbjct: 394 DWRLREVIKEELLVMKEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPS 453 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + YR+Q+RGGKG G DEDFV LF STH ++F +S G +KV+ +P G A Sbjct: 454 ADYRSQKRGGKGVIGTETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTA 513 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671 +GK++ + L LN+GE+I ++ + S + Y+V AT+ G +++ LSD++ R+ Sbjct: 514 KGKSVSSFLRLNEGEKIAAMLCLQDFAS---DRYLVMATRRGVIKKTALSDYLGTTRNLE 570 Query: 672 -GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF----PISAIRVF--AGRNSVGV 724 G I + L D I+ T ++I+L + G VRF P + +F GR + GV Sbjct: 571 GGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGV 630 Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 G+ DQ+ + +V H Sbjct: 631 TGMRFKLDNDQLDVIEVVDHT--------------------------------------- 651 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 +F++ SE G G RT D+R+ NR G+G+ A + N I + Sbjct: 652 -------------AKFLV-ASEAGLGVRTRFEDYRLINRGGRGVWAITLPDDNSIN-IAG 696 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V D D+I+L++ KG +R PVN IR +R KGV + + A+ ++++S+ ++ Sbjct: 697 ALSVKDTDEIMLLTTKGQSVRCPVNTIREVNRGGKGVKLLTLAEGDKLLSIAKV 750 >gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728] gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma acidophilum] Length = 796 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 314/876 (35%), Positives = 495/876 (56%), Gaps = 92/876 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV +K Y KCARI GE MG Sbjct: 12 EIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMG 71 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ AIYDAL RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL + A ++ Sbjct: 72 KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMM 131 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DD+ ++TV FR N+DG+ EP L ++ PN+L+NG GIAVGMATN+ HNL E+ D + Sbjct: 132 DDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAIL 191 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +D+ D +D L++ ++GPDFP G ++ + AY TGRG ++++G E + + Sbjct: 192 YEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG----EVDATED 247 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++++ IPY VNKA +++ IA+L + + I DI D++DESDR G R+VI+++ ++ Sbjct: 248 RRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRDDDIKPLV 307 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LNQLY +T+L+S + + L G +P+ L ++ +F+ R +V++RR+++ L++ ++R Sbjct: 308 LNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLDRKKER 367 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 VL G+ AV ++D VV I++ S + + A +S +++ DL D Sbjct: 368 LDVLTGILTAVEHIDRVVEILKSSKDADEA----------SSKLRNEFDLNDR------- 410 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 Q +AILE+RL RL ++ +R+E+ + EIK+ +I+ S R + K+ Sbjct: 411 ---------QIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKK 461 Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 E+ ++ + RR+RI G+ + ED I E+ ++ +S+ G VKRV YR+QRRG Sbjct: 462 EITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRG 521 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG M+ D + + +H +V +F++ G V+K K + +P S + G + L Sbjct: 522 GKG-VNTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFL 580 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L QGER+T IM P ++ Y++ T+ G+V++ SG + L+ D Sbjct: 581 KLAQGERVTEIMKAPPEK----GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDD 636 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E++SV + ++ + + G+ F S IR GR S+GVR + L +GD +++ A V+ Sbjct: 637 ELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTILT-AFVV 694 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 ++D D IL+ Sbjct: 695 NSDED----------------------------------------------------ILS 702 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +SEKG+GKRT+ +F I +R G+ G + PV D D++ILVS Sbjct: 703 ISEKGYGKRTNISEFPIHHRGSSGVMV--YRDTERTGRVSHAIPVRDEDEVILVSMNEKT 760 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 IR+ +EI SR T GV + D+RV++ I+ Sbjct: 761 IRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 >gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum] Length = 498 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 274/523 (52%), Positives = 372/523 (71%), Gaps = 27/523 (5%) Query: 43 PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102 PD+RDGLKPVHRRIL+ M ++G+ K Y KCARI GEV+GKYHPHG++++YDAL RMAQ Sbjct: 1 PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60 Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162 D+S+R +L++G GNFGSVDGD AA RYTE ++ K A +L D+ KDTV+F PN+DG + Sbjct: 61 DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120 Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222 EP VL +RYPN+LVNG GIAVGMATNIP HNLGEV+DG + +IDNP+ + LM +I+G Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180 Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282 PDFPTGA I+G++GI+ AY TG+G +++R + IE+ + +R +I+VTEIPYQVNKA ++E Sbjct: 181 PDFPTGATIMGKSGIRAAYETGKGRVIVRAKAEIEEEN-NRHRIIVTEIPYQVNKAKLIE 239 Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342 IA+LV++K+IV I+DLRDESDR+G R+VIELK+ A+ +V+LN LY++T +Q F V M+ Sbjct: 240 NIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIML 299 Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402 AL +P+ + +L +++F++EV+ RRT + LNKA RAH+L GL IA+ N+DEV+ Sbjct: 300 ALVNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEVIS 359 Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462 IIR S E AR LM+R +N LSE Q+ AILE+RL Sbjct: 360 IIRGSKTSEIARNTLMER-FN-------------------------LSEKQSTAILEMRL 393 Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522 RLTGL RD I E L I IL+S +LLG+IK ELL +K + RRT I + Sbjct: 394 RRLTGLERDKIEEEYAELMKLIDYLNSILASEEKLLGVIKDELLQIKTKYGDERRTSIEK 453 Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 + +++ ED I E++VVT++H GY+KR+ Y AQ+RGGKG Sbjct: 454 VVNEIDIEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKG 496 >gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN] gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN] Length = 816 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 329/879 (37%), Positives = 509/879 (57%), Gaps = 103/879 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E EK I S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G +K Sbjct: 3 ENEKMI-SINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RY Sbjct: 62 YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +L+K + +L DL K+TVD + N+D S +EP+VL PN+L+NG GIAVGMATN+ Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ E ++ + IDN +I ++ LM+ I+ PDFPTG +I G G+K A+ TGRG I++ Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H EK R I++ EIPYQ+ KA + K ELV+E R+ + +RDESDR G R+ Sbjct: 242 RSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LK+ + ++LN L++ T L++ FSVN +AL KP + L ++K FV R V++ Sbjct: 301 VFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA+ RAH++ G + + +L+ V+ +I+ S + E A+ +L+ + Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNKYK-------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++ILEL+L LT L + I+ E L +I I Sbjct: 413 ------------------LSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + IIK+EL +K++ RRT I L+ E + +V+T S+ GY+KR Sbjct: 455 LNDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEP---NKQVVLTTSYDGYMKR 511 Query: 551 VPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 L+ Y+ ++ G G G +DF+ + + +TH +LFF+ G + +V+ +P Sbjct: 512 TDLNEYKIKKIGVGGIVNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPE 571 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSW--NNLYVVFATKHGNVRRNKLSDFI 666 G ++G+A+ N++ +++ ++I + + + + + NN YV+ TK G +++ L + Sbjct: 572 GYKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYS 631 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + N++G A+K+ D ++ + +++IL+ K G+ +RF S +R R ++GV+ Sbjct: 632 KPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMT-RITLGVKS 690 Query: 727 ISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 I+L+K D+VI M IC ND Sbjct: 691 ITLSKLLSKDKVIGM-------------ICI----------------------NDP---- 711 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN---EIGA 840 K+++IL +SE GF +ISN S R TD+ IN + G Sbjct: 712 ------------KKEYILVISENGF--------VKISNLS--HYRKTDLKTINITSKTGC 749 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 LVA+ V + D II+++ G +R+PV EI + RATKG Sbjct: 750 LVAIKNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKG 788 >gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS] gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS] Length = 820 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 324/876 (36%), Positives = 511/876 (58%), Gaps = 95/876 (10%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E EK I S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G +K Sbjct: 3 ENEKMI-SINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKH 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RY Sbjct: 62 YKKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +L+K + +L DL K+TVD + N+D S +EP+VL PN+L+NG GIAVGMATN+ Sbjct: 122 TEIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ E ++ + IDN +I ++ LM+ I+ PDFPTG +I G G+K A+ TGRG I++ Sbjct: 182 PPHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H EK R I++ EIPYQ+ KA + K ELV+E R+ + +RDESDR G R+ Sbjct: 242 RSKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V LK+ + ++LN L++ T L++ FSVN +AL KP + L ++K FV R V++ Sbjct: 301 VFFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LNKA+ RAH++ G + + +L+ V+ +I+ S + E A+ +L+ + Sbjct: 361 RRTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK---------- 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++ILEL+L LT L + I+ E L +I I Sbjct: 411 ----------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+ + IIK+EL +K++ RRT I L+ E + +V+T S+ GY+KR Sbjct: 455 LNDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLEP---NKQVVLTTSYDGYMKR 511 Query: 551 VPLSVYRAQRRGGKG--RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 L+ Y+ + G G G +DF+ + + +TH +LFF+ G + +V+ +P Sbjct: 512 TDLNEYKIKNIGVGGIVNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPE 571 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSW--NNLYVVFATKHGNVRRNKLSDFI 666 ++G+A+ N++ +++ ++I + + + + + NN YV+ TK G +++ L + Sbjct: 572 VYKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYS 631 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + N++G A+K+ D ++ + +++IL+ K G+ +RF S +R R ++GV+ Sbjct: 632 KPNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMT-RITLGVKS 690 Query: 727 ISLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 I+L+K D+VI M IC ND Sbjct: 691 ITLSKLLSKDKVIGM-------------ICI----------------------NDP---- 711 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 K+++IL +SE GF K ++ +R ++ +GI+ +++ ++ G LVA Sbjct: 712 ------------KKEYILVISENGFVKISNLSHYR---KTDQGIKTINIT--SKTGCLVA 754 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 + V + D II+++ G IR+PV EI + RATKG Sbjct: 755 IKNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKG 790 >gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 895 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/897 (38%), Positives = 506/897 (56%), Gaps = 96/897 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M G ++ + K A Sbjct: 65 IEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFFKSA 124 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEVMG++HPHG+++IYDAL R+ Q WSLR L GQGNFGS D AA RYTE ++ Sbjct: 125 RVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTETKM 184 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ +DTVDF+ NYDG EP +L +R+PN+LVNG GIAVGMATNIP HNL Sbjct: 185 APLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPPHNL 244 Query: 196 GEVVDGCVAVIDNPDIDLDALMEI----IRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++ +PD + + L+E I+GPDFPTGA +LG GI AY TGRGSI +R Sbjct: 245 REVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSITMR 304 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +E+ G R +VVTE+PYQVN + KIAELV++ ++ +AD+RDE S R G R+ Sbjct: 305 AVVAVEEIQG-RVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSGRTGQRL 363 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VI LKR A A V+LN LY++T LQ F NM+A+ P L G + A+V + +V+V Sbjct: 364 VIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQIDVIV 423 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y LN+A RAH+L G A+ LD+V+ +IR S E AR LM+ Sbjct: 424 RRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK----------- 472 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 L+D + E+Q AILE++L RL L R I+++ L I E I Sbjct: 473 --LLD-------------IDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEYNHI 517 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVK 549 L++ + II EL + D+ RRT I+ G DM ED I E+MVVTV+ GY+K Sbjct: 518 LATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGGYIK 577 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + YR+Q RGGKG G +R +D V F+ +TH +LF + G VY+ K + L Sbjct: 578 RTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYELQEA 637 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669 A+G+ + N+L++ E I ++ + + + Y+V AT+ G +++ L+++ Sbjct: 638 GRDAKGQHVANLLAMQPDEEIQQVLDIRDYQVAQ---YLVLATRDGLMKKTALTEYDTNR 694 Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGI 727 G IA+ L D ++S +++D+LL ++ G +RF A+R GR++ GV+G+ Sbjct: 695 TGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGVKGM 753 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + D ++S +SV G Sbjct: 754 TFRGDDTLLS-----------------------------------------ASVVG---- 768 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-GALVAVFP 846 ++ ++ V+E GF KRT++ +R+ NR G GI+ V+K+ + G L Sbjct: 769 --------EQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIK---VAKLQDARGDLAGALI 817 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903 V + D+I++V G ++R V E+ R T GVV A D+R++S+ + E +V Sbjct: 818 VGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSERNLV 874 >gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102] gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102] Length = 827 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 326/906 (35%), Positives = 501/906 (55%), Gaps = 115/906 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 +H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATN+P HN Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNVPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+IDNPD+ + L ++I GPDFPTG I+G TGI+ AY G+G I++RGV+ Sbjct: 193 LGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEIIGETGIREAYTIGKGGILLRGVA 252 Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E + S R I++TE+PYQVNKAA +EK+A+LV + R+ I+DLRDESDR+G R Sbjct: 253 TLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR + +L LY T+LQ F ++A+ +P + +L +L+ F++FREE + Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQPRQLSLRQLLQEFLSFREETL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA+ R H++ GL A++NLD V+ I+R +P+ TA+ L + Sbjct: 373 NRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSEVQ AIL + L RLT L + +++ E + +I Sbjct: 424 -----------------LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQ 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-----------CIVREDM 538 +L+ R LL +K++L S+K + PRRT+I E +E E+ Sbjct: 467 LLNDRRELLKALKKDLRSLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEA 526 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 ++ + GYV+R Q G K ++ + D DF+ + T +L + G V Sbjct: 527 ILEFTQRGYVRRT-------QPSGRKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKV 579 Query: 599 YKEKVWRLPIGSPQA-RGKALINILS-LNQG--ERITTIMPFPEDESSWNNLYVVFATKH 654 Y V +P + ++ RGK LI +LS QG E + + P++ + ++ TK Sbjct: 580 YPVNVGEIPPTTGRSPRGKPLITMLSNTAQGAQEAVVSRFLLPDNLETQQ---MILLTKQ 636 Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714 G ++R L +F + R G +KL DE+ + ++L + G+ +RF + + Sbjct: 637 GRIKRLSLGEFTNLTRRGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQ 696 Query: 715 V-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 + GR ++G++ L K Q++ C +T Sbjct: 697 LPIMGRTAMGLQAFRLLKNQQMVG---------------C------------------VT 723 Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD-V 832 K+D +L V+++G+ KR ++ R +NR G +A Sbjct: 724 VGKDD--------------------HLLLVTQEGYAKRMAASQLRAANRGDLGTQALKFA 763 Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 SK + + +V + ++ LV++K ++R+PV + I R KG I +DE+++ Sbjct: 764 SKTDNLAGMVIAIA---SGEVALVTNKERVVRIPVETVPILGRDVKGESIIQLNRDEKII 820 Query: 893 SVERIR 898 +V +R Sbjct: 821 TVAEVR 826 >gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum] Length = 793 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 315/876 (35%), Positives = 492/876 (56%), Gaps = 92/876 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV +K Y KCARI GE MG Sbjct: 9 EIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMG 68 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ AIYDAL RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL + A ++ Sbjct: 69 KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMM 128 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DD+ ++TV FR N+DG+ EP L ++ PN+L+NG GIAVGMATN+ HNL E+ D + Sbjct: 129 DDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAIL 188 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +D+ D +D L++ ++GPDFP G ++ + AY TGRG ++++G E + + Sbjct: 189 YEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQG----EVDATED 244 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++++ IPY VNKA +++ IA+L + + I DI D++DESDR G +VI+++ ++ Sbjct: 245 RRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRDDDIKPLV 304 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LNQLY +T+L+S + + L G +P+ L ++ +F+ R +V++RR+++ L + ++R Sbjct: 305 LNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLERKKER 364 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 VL G+ AV ++D VV I++ S + + A +S +++ DL D Sbjct: 365 LDVLTGILTAVEHIDRVVEILKSSKDADEA----------SSKLRNEFDLNDR------- 407 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 Q +AILE+RL RL + +R+E+ L EIK+ +I+ S R + K+ Sbjct: 408 ---------QIKAILEMRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKK 458 Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 E+ ++ + RR+RI G+ + ED I E+ ++ +S+ G VKRV YR+QRRG Sbjct: 459 EITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRG 518 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG M+ D + + +H +V +F++ G V+K K + +P S + G + L Sbjct: 519 GKG-VNTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFL 577 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L QGER+T IM P ++ Y++ T+ G+V++ SG + L+ D Sbjct: 578 KLAQGERVTEIMKAPPEK----GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDD 633 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E++SV + +I + + G+ F S IR GR S+GVR + L +GD +++ A V+ Sbjct: 634 ELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTILT-AFVV 691 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 ++D D IL+ Sbjct: 692 NSDED----------------------------------------------------ILS 699 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 +SEKG+GKRT+ +F I +R G+ G + PV D D++ILVS Sbjct: 700 ISEKGYGKRTNISEFPIHHRGSSGVMV--YRDTERTGRVSHAIPVRDEDEVILVSMNEKT 757 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 IR+ +EI SR T GV + D+RV++ I+ Sbjct: 758 IRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 793 >gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] Length = 825 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 337/905 (37%), Positives = 511/905 (56%), Gaps = 96/905 (10%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 M + + E + + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M Sbjct: 1 MPRQLELTGPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++G+ ++ + KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGS+ Sbjct: 61 HELGLAPDRPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSI 120 Query: 121 DGDPPAAERYTECRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179 D DPPAA RYTECRL LL ++ TV+F N+DGS +EP VL AR P +L+NG Sbjct: 121 DNDPPAAMRYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGS 180 Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239 GIAVGMATNIP HNLGE+VDG VA+IDNP++ + L+ II GPDFPTG I+G GI+ Sbjct: 181 AGIAVGMATNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIRE 240 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296 AY TGRGSI +RG++H E+ R + I+VT +PYQVNKAA +EK+AELV ++ I Sbjct: 241 AYLTGRGSITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGI 300 Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356 +DLRDES+R+G RVV+E+KR A + IL LYR T LQ+ F ++ L G +P L Sbjct: 301 SDLRDESNREGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRE 360 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +L+ F+ FR + RR +Y L +A +RAH L G +A+ANL +V+++ + + AR E Sbjct: 361 LLEQFLEFRVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAE 420 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 L ++SY LSE Q+ IL++ L RLT L R+ + +E Sbjct: 421 L------------------EASYG--------LSERQSEEILQMPLRRLTQLDRERLASE 454 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536 L ++ E L SR +LLG++K+EL +K + PRRT I + I + Sbjct: 455 HRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHADPRRTCIEARTAPLPTLAEITSD 514 Query: 537 D-MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 D +VV ++H GYV+R+P + + +RR R+ D DFV + + T +L + Sbjct: 515 DEVVVQLTHRGYVRRIPAAAF--ERRSRSRRAVSRTEDNDFVVESYPTRTRNELLVITRS 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G Y KV +P P++RG L+ +LS+ QGE+I E+ +L++V T+ G Sbjct: 573 GRAYSLKVSEIPETGPRSRGTPLVTLLSI-QGEQIAATF---VRENYPPDLFLVLLTREG 628 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 +++ LS+ + G + +KL D+++ V T + I++ T G+ +RF ++ Sbjct: 629 RIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLATAHSQIVVGTSAGRLLRFVADEAQL 688 Query: 716 FA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 A GR+++G++ I L +G+ + +M +V G+ E+ Sbjct: 689 PAMGRSALGLQAIKLRRGESLAAMTVV-------------------------GNGED--- 720 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 +L VS G GKR + + R+ R+G G T V Sbjct: 721 -------------------------LLMVSRLGLGKRLKTGEIRLQERAGLG---TPVGL 752 Query: 835 INEIG--ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892 + E +L+AV V ++ + +D+ L++V + E+ R++ G + E+++ Sbjct: 753 LRERNGDSLLAVLAVGAEGEVAMATDQERLVQVDLGELAATDRSSPGKPLAVLNPAEQII 812 Query: 893 SVERI 897 +V R+ Sbjct: 813 AVTRL 817 >gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50] gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50] Length = 834 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 328/882 (37%), Positives = 503/882 (57%), Gaps = 89/882 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I+ E++ +L YA++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K A Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQ++S R LI+G GNFGS+DGD AA RYTE RL Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +++L+ D+ DTV F NYD S EP L PN+LVNG GIAVGMAT+IP HNL Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EVV A IDN DI +D +++ I GPDFPTGA++ T ++ Y TGRGS++IR Sbjct: 202 KEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTKMREGYKTGRGSVIIRAKI 261 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ ++ VVTEIPYQ NKA ++EKIAELV++K I I D+RDES+ +G R++IEL Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ DV+L++LY+YT+LQS FS+N++ LN P L I+K +V F+ V+++R+ Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSI 380 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + NK R H+L L IA+ N+D+V+ II+ S + A+ +L + +N Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTNK-YN----------- 428 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 E Q +AIL++RL RL GL RD I E+ ++ + +++++ Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTK 474 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 ++K +L + D+ RRT ++ E L+++EDE+ I ++ +S GY++R+ Sbjct: 475 EEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINP 534 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 +R Q+RGG+G S V + D + + VLFF++ G VY+ K++ + S A Sbjct: 535 DEFRIQKRGGRGVS-VNVEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTA 593 Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 RG ++N L+ L ++IT I+P ++ +N Y+ F T+ G ++R K+S+F INR+G Sbjct: 594 RGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNG 651 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 K A+ L D+++SV T ++ I + + G+ +R S + R GVR + L Sbjct: 652 KKAINLRENDQLISVFATTGQDTIFIANESGKVIRIKESVVNP-QSRVGSGVRALKLEAN 710 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D V+ G IS Sbjct: 711 DVVV----------------------------------------------GAISS----- 719 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K I TVS KG K+T D+RIS R+GKGI+ ++++ G A+ + D Sbjct: 720 --FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIDARETDL 775 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 I+++S G LI+ V+ I SR GV A ++ + ++ Sbjct: 776 ILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADNQEINAI 817 >gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus] Length = 1031 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 296/722 (40%), Positives = 432/722 (59%), Gaps = 43/722 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + +V + E++ S++ YA+++ILGRA+PD+RDGLKPVHRRIL+ M + + + KCA Sbjct: 165 VVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRKCA 224 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YDAL RMAQD+ + LI+G GNFGS+D DP AA RYTEC+L Sbjct: 225 RVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTECKL 284 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A LL D+ DTVD N+DG+ +EPVVL +R P +L+NG GIAVGMATNIP HN Sbjct: 285 SSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPPHN 344 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVV +A+I NP I D L ++ PDFPTG I+G G + Y T G + +R + Sbjct: 345 LGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRATT 404 Query: 255 HIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 HIE K R +VVTE+PYQVNK+++L+++AE+V +K++ I+DLRDESDR G RV Sbjct: 405 HIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDGVRV 464 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEV 368 V+ELKR A+ V+ N L++ T LQ+ FS NM+AL +G KP RF+L +++FV FR Sbjct: 465 VVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFRFTT 524 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RRT + L K R R H++ G+ A+ +D V+ ++R S + AR LM + Sbjct: 525 VRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAEPYG----- 579 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LS+ Q AIL LRL RLT + ++ E L ++ Sbjct: 580 --------------------LSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMERLE 619 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +++ S+++ II +EL K++ PRRT I ++ +ED + ++ VV V+ GY+ Sbjct: 620 GVMNEDSKVMDIIVEELTEAKNKHAVPRRTMIKPDEGELHEEDLLANDNSVVVVTAAGYI 679 Query: 549 KRVPLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 KR+PL + AQ RG +G++G M D D V F H ++LF S G Y + +++P Sbjct: 680 KRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQVP 739 Query: 608 IGSPQARGKALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +GS A+G + +L + E+I +++ F EDE Y+V T+ G ++R L+ Sbjct: 740 VGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFREDE------YLVLLTQKGYIKRTPLAA 793 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVG 723 F + G I + L D + V+ C EN I++ +K G RF + + +GR S G Sbjct: 794 FKSTSSRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRPSGRTSRG 853 Query: 724 VR 725 V+ Sbjct: 854 VK 855 Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 17/137 (12%) Query: 770 EEITSLKNDSSV---------EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 EE+T KN +V EG + EE +L + ++ V+ G+ KR +F Sbjct: 634 EELTEAKNKHAVPRRTMIKPDEGELHEE---DLLANDNSVVVVTAAGYIKRMPLEEFTAQ 690 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 NR +G +S +++ + F D+D I+ VSDKG + ++ + SR KGV Sbjct: 691 NRGTRGKAGAKMSSDHDV--VQHFFTCQDHDTILFVSDKGVAYGIRAFQVPVGSRTAKGV 748 Query: 881 V---IFSTAKDERVVSV 894 + A DE++ SV Sbjct: 749 PVPQVLPIAGDEQIASV 765 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 125/299 (41%), Gaps = 48/299 (16%) Query: 629 RITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDS-R 681 R T I P E++ N+ VV T G ++R L +F NR GK K+ S Sbjct: 647 RRTMIKPDEGELHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQNRGTRGKAGAKMSSDH 706 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNSVGV---RGISLAKGDQVIS 737 D + TC + IL + G V + I A +V G R + GV + + +A +Q+ S Sbjct: 707 DVVQHFFTCQDHDTILFVSDKG--VAYGIRAFQVPVGSRTAKGVPVPQVLPIAGDEQIAS 764 Query: 738 MA----------IVLHADADYDERICYMKHMSAQRR---LIS-GDTEEITSLKNDSSVEG 783 + +VL Y +R S R +IS G+ + + +K G Sbjct: 765 VLAVDDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTLRWVKRCCDENG 824 Query: 784 NI--------------------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + S + +K + +L ++ +G+GKR + +F+ + R Sbjct: 825 IVIGSKQGYATRFLANQKDLRPSGRTSRGVKEEGHSLLVLTTRGYGKRVALNEFKTTRRG 884 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 GKG+ A + + E L V +D+I+L + +GT++R I SR GV++ Sbjct: 885 GKGVIALKLRQKLE-DTLACFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIV 942 Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI---NEIGALVAVFP 846 CQ+ IL VS+KG ++ + +R+ KG+ V I +I +++AV Sbjct: 715 CQD----HDTILFVSDKGVAYGIRAFQVPVGSRTAKGVPVPQVLPIAGDEQIASVLAVDD 770 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +++ ++L++ KG + R P+ + S +++G++I S +D+ + V+R Sbjct: 771 FREDEYLVLLTQKGYIKRTPLAAFK--STSSRGLIIISLGEDDTLRWVKR 818 >gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9] gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9] Length = 838 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 330/916 (36%), Positives = 506/916 (55%), Gaps = 121/916 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID+PD+ + L+E+I GPDFPTG I+G GIK AY TG+G I++RGV Sbjct: 193 LGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIILRGVV 252 Query: 255 HIE---KTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E T G R + I+VTE+PYQVNKA +EK+A+LV + R+ I+DLRDESDRQG R Sbjct: 253 SLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDRQGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+ + ++ QLY+ T+LQ+ F ++AL +P + +L +L+ F+ FRE+ + Sbjct: 313 VVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFREDTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA +RA ++ GL A++ +DEV+ I+R SP+ TA+ L Q+ Sbjct: 373 NRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + L+E Q AIL + L RLT L + +++ E + L +I Sbjct: 424 -----------------LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRR 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-------------EDEDCIVR- 535 +L R LL +K++L ++K + RRT+++ G + + E E + Sbjct: 467 LLEDRRELLKSLKKDLRTLKRKYGDTRRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISP 526 Query: 536 -----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E ++ + GYV+R+ +A ++ + D DF+ I +TH +L Sbjct: 527 EEQPPEPAILEFTQRGYVRRLAPGSKKA-------KAETITGDNDFLIQTEITNTHQDLL 579 Query: 591 FFSSLGFVYKEKVWRL-PIGSPQARGKALINILS-LNQG--ERITTIMPFPEDESSWNNL 646 ++ G VY KV + PI + RG LI +L+ QG E I PE + + + Sbjct: 580 ILNTSGKVYPVKVGDISPISARSPRGMPLITLLTNTAQGNVEGILGRFILPETKDTHD-- 637 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 +V TK G ++R L + +++ G +KL D++ + ++++L + G+C+ Sbjct: 638 -MVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCL 696 Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 RF I+ ++ GR ++G++ + K Q+IS + + +E + + +R+ Sbjct: 697 RFAINDDQLPVMGRAAMGLQSFRILKSQQIISCVTI-----EQEENLLLVTQEGYAKRIS 751 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 SG R NR Sbjct: 752 SG------------------------------------------------SLRAGNRGDL 763 Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 GI+ N+ LVA+ N + +++LV++K +++ V I I R +G IF Sbjct: 764 GIQMLKFH--NKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPILDRDARGENIFPM 821 Query: 886 AKDERVVSVERIRESE 901 +DE + SV + E+E Sbjct: 822 TRDEVITSVVVVLETE 837 >gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 862 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 337/903 (37%), Positives = 504/903 (55%), Gaps = 100/903 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V + EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M G + + K A Sbjct: 12 IKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDNSFSKSA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 ++ G+VMG YHPHG+ AIYD + R+ Q WS+R L+ GQGNFG+ AA RYTE R+ Sbjct: 72 KVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTPGDLGAAAPRYTEVRM 131 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ + TVDF PNYDGS EP VL +R+PN+LVNG GIAVGMAT IP HNL Sbjct: 132 APLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSEGIAVGMATRIPPHNL 191 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV G ++NPD L AL++ I+GPDFPTGA+ILG GI++ Y TG GSI R Sbjct: 192 REVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTRGIEDMYRTGHGSITQR 251 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V +++ G R+ +VVT++PYQVN +L+K+ E +++ R+ IAD+RDE S R G R+ Sbjct: 252 AVVEVDEIHG-RQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGIADIRDETSGRAGQRI 310 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LK+ A A V+LN LY++T LQ+ F NM+AL P +L G ++ +V F+ EV++ Sbjct: 311 VVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDGVPRTLSLDGFVRHWVTFQMEVIL 370 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L +A R H+L G A+ LD V+ +IR S + AR LM DL Sbjct: 371 RRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLARTGLM----------DL 420 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +++ +D Q AILE++L RL L R I +E + + DI Sbjct: 421 LEIDED----------------QANAILEMQLRRLAALERQKIIDEYEEKAALVADYKDI 464 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 ++ R II +EL ++ D+ RRT I+ +M ED I ED+VVT++ G++KR Sbjct: 465 IAKPERQRAIIGEELGAIVDKYGDDRRTTILPFDGEMSVEDLIPEEDVVVTITRGGFIKR 524 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 S YRAQ RGGKG G +R +D V + STH LFF++LG VY+ K + +P Sbjct: 525 TKTSEYRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNLGRVYRIKGYEIPEAG 584 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 A+G+ + N+L+ GE I + + + + Y+V AT G V++ +LSD+ Sbjct: 585 RDAKGQHIANLLAFQPGETIASTITLKGYDQAQ---YLVLATADGLVKKTRLSDYDSPRT 641 Query: 671 SGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724 G IA+KL + D +++ +++D+LL ++ G +RF + A+R GR S GV Sbjct: 642 GGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLRFKATDEALRPM-GRPSSGV 700 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 G+ +GD +++M R++ + E Sbjct: 701 TGMKFREGDSLLTM------------------------RVVRDNAE-------------- 722 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 + V+E GF KRTS ++RI R+G GI+ +++ E G LV Sbjct: 723 ---------------VFVVTEGGFAKRTSVDEYRIQGRAGLGIKVAKLTE--ERGDLVGA 765 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 + + + ++++ + G ++R E+ R T+GV +R++++ R E+ I Sbjct: 766 L-ITEGEDVMVIMESGKVMRASAAEVSKTGRNTQGVTFARPDGGDRIIAIARNIETTI-- 822 Query: 905 EAE 907 EAE Sbjct: 823 EAE 825 >gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135] gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135] Length = 815 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 320/889 (35%), Positives = 509/889 (57%), Gaps = 87/889 (9%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 9 EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 69 AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A L+ D+ + TVDFR NYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 129 YTEARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E+ D V ++++ + + L+ I++GPDFPT A I+ + AY TG+GS+V Sbjct: 189 MAPHNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYNESLVKAYTTGKGSVV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ D I++T+IPY VNK+++L KIA L++E+++ I+D+RDESDR+G R Sbjct: 249 IRSRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ F+ R+E+V Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISEFIDHRKEIV 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L KARD+AH+L GL I++ ++D V+ IIRFS + A +E + + +N Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDA-KECIIKEFN------ 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT L + + E + IK+ D Sbjct: 422 -------------------LSEIQANSILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYED 462 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL S R++ I+++E++++ + RRT+I+ E +L D + RE+++V ++ G+ Sbjct: 463 ILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ Y+ Q GGKG ++D+D V V+TH +L S+ G +Y + + Sbjct: 523 IKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIK 582 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+ + +++L + E I I +E S +N Y++ T +G + R + F Sbjct: 583 DSSRTSKGQNIRELINLGETEEILAIKNC--NELSLDN-YLLITTANGKIARIETEGFKT 639 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I +KLD +D + S E ++ + I+ +K G F + IR+ R + GV G+ Sbjct: 640 VKSRGVIVIKLDDKDFVTSAEIVSKNDKIICISKKGNAFAFNSNDIRL-THRGTQGVSGM 698 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + +GD +I K +SA+ Sbjct: 699 KVREGDMLI-------------------KALSAK-------------------------- 713 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 + +L VSE G+GKR R G S + GA+V V Sbjct: 714 --------QGSHLLIVSENGYGKRLEISRVTELKRGATGYTCYKKSD-EKAGAVVDAITV 764 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896 +D+I+LVS ++R V++I + +G+ + S +D +++SV + Sbjct: 765 AQDDEILLVSKTSKVLRTLVDKISEQGKDARGMQVLSLDED-KLMSVSK 812 >gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 834 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 331/869 (38%), Positives = 498/869 (57%), Gaps = 91/869 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I+ E++ +L YA++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K A Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQ++S R LI+G GNFGS+DGD AA RYTE RL Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +++L+ D+ DTV F NYD S EP L PN+LVNG GIAVGMAT+IP HNL Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EVV A IDN DI +D ++ + I GPDFPTGA++ + ++ Y TGRGS++IR Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ ++ VVTEIPYQ NKA ++EKIAELV++K I I D+RDES+ +G R++IEL Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ DV+L++LY+YT+LQS FS+N++ LN P L I+K +V F+ V+++R+ Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVSVIIKRSI 380 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + NK R H+L L IA+ N+D+V+ II+ S E A+ EL + +N Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNK-YN----------- 428 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493 E Q +AIL++RL RL GL RD I E+ ++ E LD+L ++ Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDVLINT 473 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K +L + D+ RRT ++ E L+++EDE+ I ++ +S GY++R+ Sbjct: 474 KEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +R Q+RGG+G S V D + + VLFF++ G VY+ K++ + S Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG ++N L+ L ++IT I+P ++ +N Y+ F T+ G ++R K+S+F INR+ Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GK A+ L D+++SV T ++ + + + G+ +R S + R GVR + L Sbjct: 651 GKKAINLRENDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVRALKLED 709 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ G IS Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K I TVS KG K+T D+RIS R+GKGI+ ++++ G A+ + D Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880 I+++S G LI+ V+ I SR GV Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803 >gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708] gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708] Length = 835 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 330/910 (36%), Positives = 500/910 (54%), Gaps = 123/910 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG + +IDNPD+ + L EII GPDFPTG I+G +GI+ AY TG+G IV+RGV+ Sbjct: 193 LGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIVGNSGIREAYTTGKGGIVLRGVA 252 Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E K S R I++TE+PYQVNKA +EK+A+LV + R+ I+DLRDESDR+G R Sbjct: 253 TLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR + IL LY T+LQ+ F ++AL +P + +L L+ F+ FRE + Sbjct: 313 VVIELKRDTNPQEILQHLYHQTALQTTFGAILLALVEGQPRQLSLRQTLQEFLNFREHTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA +R +++ GL A++ LDEV+ I+R + + TA+ L ++ Sbjct: 373 NRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSEVQ AIL + L RLT L + +++ E +SL +I Sbjct: 424 -----------------LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRR 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----------EGLLDMED---------E 530 +L R LL +K++L S+K + PRRT+I+ +G + ED + Sbjct: 467 LLEDRRELLKALKKDLRSLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKLQTPK 526 Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E+ ++ + GYV+R+ + G K ++ + + DF+ + T +L Sbjct: 527 SEQPPEEAILEFTQRGYVRRLSPT-------GKKPKAENGLHENDFIIQTELTDTEKDLL 579 Query: 591 FFSSLGFVYKEKVWRLP-IGSPQARGKALINIL-SLNQG--ERITTIMPFPEDESSWNNL 646 ++ G VY KV +P I RG LI +L S QG E + PE L Sbjct: 580 ILNTGGKVYPVKVGDIPAITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQML 639 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 + TK G ++R + +F ++R G +KL DE+ + T ++L + G+ + Sbjct: 640 LL---TKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRLL 696 Query: 707 RFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765 RF ++ ++ GR ++G++ L K Q++ A V D Sbjct: 697 RFAVNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDD-------------------- 736 Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825 Q +L V+++G+ KR + + R +NR Sbjct: 737 --------------------------------QLLL-VTQEGYAKRIPASNLRAANRGDL 763 Query: 826 GIRATDV-SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884 GI+ +K + + +V P ++ LVS+K ++R+PV+ + I R KG + Sbjct: 764 GIQMLKFHNKTDNLAGMVRATP---GVEVALVSNKERVVRIPVDTVPILDRDAKGESVLQ 820 Query: 885 TAKDERVVSV 894 +DE++++V Sbjct: 821 LNRDEKIITV 830 >gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] Length = 793 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/728 (40%), Positives = 455/728 (62%), Gaps = 47/728 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRIL+ ++G+ NK + K A Sbjct: 5 IYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAHKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A+YDAL RMAQD++ R LI+G GNFGS+DGD AA RYTE +L Sbjct: 65 RLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYTETKL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL+++ ++TV FR N+DG+ QEP VL ++ PN+L+NG GIAVGM+T+IP HNL Sbjct: 125 TEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+D + +++ P+ LD +++ + GPDFPTGA I+G GIK+AY G+G I++R S Sbjct: 185 AEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIVGNEGIKSAYENGKGKIILRAKS 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G + I++TEIPYQ+NK+ ++E+IAELV + ++ ++DLRDESD+ G R++I L Sbjct: 245 KIEK-EGRHKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIRILIAL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K GA ++ LN+LY+YTS+QS F +N++AL+ KP+ L+ IL F+ FR+EV+ TK Sbjct: 304 KSGADPELTLNRLYKYTSMQSSFRINLLALDNKKPKVMGLLEILNHFIEFRKEVIKNHTK 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y LNK+ +R H+L GL IA+ LD V++IIR S A+ +L+++ Sbjct: 364 YNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQ-------------- 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +SEVQ ++IL+++L RL G+ + + E L +IKE IL+ Sbjct: 410 ------------LNISEVQAQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEE 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L +K EL +KD+ RRT I+E ++ +D I ++ VV++S+ G +KR Sbjct: 458 KTLKEYLKNELKEMKDKFADKRRTTIIEDDEKAEINKQDLIKEKEAVVSLSYRGIIKR-- 515 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + S + D++ S+ +LFFS G VY +V L Sbjct: 516 ----------NEEYSNLRAAKNDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHGL 565 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A G L + L E I ++ + ++ NN Y VF T+ G ++R ++ + N S Sbjct: 566 ATGDNLSKYMQLPLEENIISLNILSK-KNKQNNFY-VFVTESGQIKRTAAKEY-ETNYSH 622 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+KLD+ D++++VE +++ I++ ++ G +RF + GRN++G + I LAK Sbjct: 623 IRAIKLDN-DKLINVEKAEEKDQIMIISQNGYAIRFKGKSFSS-TGRNTMGSKAIKLAKN 680 Query: 733 DQVISMAI 740 D+V + +I Sbjct: 681 DKVTAFSI 688 Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 11/111 (9%) Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 L ND + +EE+ Q I+ +S+ G+ R F + R+ G +A ++K Sbjct: 628 LDNDKLINVEKAEEKDQ--------IMIISQNGYAIRFKGKSFSSTGRNTMGSKAIKLAK 679 Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 +++ A ++F N N ++ V++ G ++ +++ R+ R +G IFS Sbjct: 680 NDKVTAF-SIF--NKNKYLVSVTETGRANKIKLSQFRLQKRNGRGQRIFSN 727 >gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31] gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a] gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7] gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b] gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26] gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31] gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a] gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7] gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b] gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26] gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1] Length = 810 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 500/889 (56%), Gaps = 87/889 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + AR L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L++RL +LT L + ELN L IK+ DI Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++K +S + Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I+LVS + +R ++ + +G+ + D +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808 >gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 804 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 326/881 (37%), Positives = 491/881 (55%), Gaps = 88/881 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I SI +EMQ+SY+ YA++VI+GRA+PD RDGLKP RRIL+ M ++ +++ K A Sbjct: 5 IVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A Y+ L RMAQD+S+ +L+EGQGN GSVDGDPPAA+RYTE RL Sbjct: 65 RVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEVRL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 +K A +L D+ K++V F PN+D + EPVVL ++ PN+++NG GIAVG+ATNI HNL Sbjct: 125 RKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV A +DN +I L+ ++GPDFPTG ++ + +Y GRGS+ IR Sbjct: 185 REVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGRLIESYIKGRGSVTIRARVS 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IEK E+IV+ EIPY VNKA+++EKI LV+++ I I+DLRDESD++G R+ IELK Sbjct: 245 IEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + D +LN LY++T LQ V VA+ G + + ++K FV R VV+ RT Y Sbjct: 304 ANTNPDYVLNALYKHTQLQITMPVMNVAVLGNRLLNLNIRDMIKIFVEHRFGVVINRTNY 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L A R H++ GL IA ++D VV IIR S N A+ LM + Sbjct: 364 DLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYG------------- 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++E Q AIL+++L++LT L ++++ E L I +L S+ Sbjct: 411 -------------ITEAQAAAILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKE 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 ++ IIK E + ++ RRT I L+++E+ED I ED ++ ++ GY+KR+P+ Sbjct: 458 KVYQIIKDETKEIAEKYGIDRRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLPMD 517 Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614 VY+ Q RGG+G + +++ DFV + T +L +S G VY K + +P G A+ Sbjct: 518 VYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRYAQ 577 Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674 GKA +N++S+ +GERI I+ D S N ++FAT+ G ++ K F + +G Sbjct: 578 GKAAVNLISIAEGERIEQIIN-TRDFSGKN---LIFATRRGRIKSTKAELFSRPRANGIR 633 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+KL+ D ++ V T +++ L T+ G+ +RF S +R GR + GVRGI L D+ Sbjct: 634 AIKLNEDDIVVGVCLSTGGSNVFLATRNGKAIRFMESDLR-HMGRVASGVRGIRLKPNDE 692 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 ++ + + AD + I Sbjct: 693 LVDVVV-----ADPKKNI------------------------------------------ 705 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 +T++E+G+GK T +R+ R G G+ V++ + G +V V +D +I Sbjct: 706 ------ITITERGYGKATLLERYRLQRRGGGGVINLKVTE--KTGKVVRVLDGEQDDNVI 757 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895 + + KG IR N IR+ R GV + D +VV + Sbjct: 758 IFNSKGLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQ 798 >gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a] Length = 810 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 501/889 (56%), Gaps = 87/889 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ +L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVS----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L++RL +LT L + ELN L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++K +S + Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I+LVS + +R ++ + +G+ + D +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808 >gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1] Length = 791 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 320/874 (36%), Positives = 486/874 (55%), Gaps = 93/874 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV +K Y K ARI GE Sbjct: 6 IEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIGE 65 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 MGKYHPHG+++IY+ALARMAQD+SLR LI+GQGNFGS+DGD PAA RYTE RL K A Sbjct: 66 TMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMAE 125 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++ D+ K+TV F PN+DGS EPV +R P +L+NG GIAVGMATN+ HNL E+ D Sbjct: 126 EMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEISD 185 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + ID+PD ++ L++ ++GPDFP G +I + + N Y TG G + +G E Sbjct: 186 AIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRNSDLLNIYRTGHGKVFCQG----EIDD 241 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 ++++I++ +PY VNKA ++ +AE V+ I +I+D+RDESDR G RVVI++K S Sbjct: 242 EEKKKIIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDDSK 301 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 + +NQLY +T L++ VN + L +P+ TL ++ F+ FR E++ +R+ + +NK Sbjct: 302 GLTINQLYEHTPLETTIGVNNLVLLNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEVNKL 361 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 DR H+L GL IA+ N+D V++IIR S N + A+ LM + Sbjct: 362 MDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQ-------------------- 401 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 + LSE Q AIL++RL RLTGL I +EL S+ I+ +I+++ S+ + Sbjct: 402 ------LSLSEKQALAILDMRLQRLTGLEIKKINDELISIKENIERLNEIINNESKRRDV 455 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +KQE L +K + RRT+++ ++ DED I E+ ++ +S G +KRV Y Q Sbjct: 456 LKQETLEIKKQFGDVRRTKVLNRDINARNDEDIIPNEESIMILSENGLLKRVSSEEYNVQ 515 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 +RGGKG + R ED V + +H + FF++ G V + K + + S + G Sbjct: 516 KRGGKG-TITATRKEDTVRSILSCMSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVGG 574 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 L +N+ E+I IM P +S N +++ TK G ++R + + + + SG +KLD Sbjct: 575 TFLKMNENEKIKQIMKSP---ASPKN-FLIIITKKGFIKRTPVKEILDMRESGLKIIKLD 630 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 +DE++SV + + I + + F +S GR S GV+ + L G +VI+ Sbjct: 631 DQDEVVSVMDLEKPSKIFVAASNNKAAVF-LSDEVSSTGRASRGVKSMRL-NGAEVINSF 688 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 +V D Sbjct: 689 LVDDNDT----------------------------------------------------- 695 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +++++E G GKRT DF I +R G S+ G+LV PV D+ ++++V+ Sbjct: 696 VMSITENGLGKRTKITDFSIHHRGSSGNLIFKESE--RTGSLVTALPVGDSQEVLIVTRN 753 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 IR+ +EI+I SR T GV + + D+ VV+ Sbjct: 754 NKTIRLNSDEIKIQSRVTSGVKLINVDDDDLVVA 787 >gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 834 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 329/869 (37%), Positives = 499/869 (57%), Gaps = 91/869 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I+ E++ +L YA++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K A Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQ++S R LI+G GNFGS+DGD AA RYTE RL Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +++L+ D+ DTV F NYD S +EP L PN+LVNG GIAVGMAT+IP HNL Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EVV A IDN DI +D ++ + I GPDFPTGA++ + ++ Y TGRGS++IR Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ ++ VVTEIPYQ NKA ++EKIAELV++K I I D+RDES+ +G R++IEL Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ DV+L++LY+YT+LQS FS+N++ LN P L I+K +V F+ V+++R+ Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISVIIKRSI 380 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + NK R H+L L IA+ N+D+V+ II+ S E A+ +L + +N Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNK-YN----------- 428 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493 E Q +AIL++RL RL GL RD I E+ ++ E LD+L ++ Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDVLINT 473 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K +L + D+ RRT ++ E L+++EDE+ I ++ +S GY++R+ Sbjct: 474 KEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +R Q+RGG+G S V D + + VLFF++ G VY+ K++ + S Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG ++N L+ L ++IT I+P ++ +N Y+ F T+ G ++R K+S+F INR+ Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GK A+ L D+++SV T ++ + + + G+ +R S + R GV+ + L Sbjct: 651 GKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKLED 709 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ G IS Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K I TVS KG K+T D+RIS R+GKGI+ ++++ G A+ + D Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880 I+++S G LI+ V+ I SR GV Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803 >gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 834 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 330/869 (37%), Positives = 499/869 (57%), Gaps = 91/869 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I+ + I+ E++ +L YA++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K A Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG++A+Y+ + RMAQ++S R LI+G GNFGS+DGD AA RYTE RL Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K +++L+ D+ DTV F NYD S +EP L PN+LVNG GIAVGMAT+IP HNL Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 196 GEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EVV A IDN DI +D ++ + I GPDFPTGA++ + ++ Y TGRGS++IR Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKI 261 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 E+ ++ VVTEIPYQ NKA ++EKIAELV++K I I D+RDES+ +G R++IEL Sbjct: 262 DFEENK-KHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIEL 320 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ DV+L++LY+YT+LQS FS+N++ LN P L I+K +V F+ V+++R+ Sbjct: 321 KKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSI 380 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + NK R H+L L IA+ N+D+V+ II+ S E A+ +L + +N Sbjct: 381 FEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNK-YN----------- 428 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SS 493 E Q +AIL++RL RL GL RD I E+ ++ E LDIL ++ Sbjct: 429 --------------FDEEQNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDILINT 473 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K +L + D+ RRT ++ E L+++EDE+ I ++ +S GY++R+ Sbjct: 474 KEEQNNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRIN 533 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 +R Q+RGG+G S V D + + VLFF++ G VY+ K++ + S Sbjct: 534 PDEFRIQKRGGRGVS-VNAEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRT 592 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 ARG ++N L+ L ++IT I+P ++ +N Y+ F T+ G ++R K+S+F INR+ Sbjct: 593 ARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRN 650 Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 GK A+ L D+++SV T ++ + + + G+ +R S + R GV+ + L Sbjct: 651 GKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKLED 709 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 D V+ G IS Sbjct: 710 DDVVV----------------------------------------------GAISS---- 719 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 K I TVS KG K+T D+RIS R+GKGI+ ++++ G A+ + D Sbjct: 720 ---FKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIGARETD 774 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGV 880 I+++S G LI+ V+ I SR GV Sbjct: 775 LIMIISSDGNLIKTKVSNIPSLSRNASGV 803 >gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805] gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805] Length = 810 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 312/889 (35%), Positives = 502/889 (56%), Gaps = 87/889 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SS+ LSE+Q ++L++RL +LT L + E N L IK+ DI Sbjct: 413 ------SSFG--------LSEIQANSVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++K +S + Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I+LVS + +R ++ + +G+ + D +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808 >gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a] gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a] gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a] gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a] gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a] gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a] gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a] gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a] Length = 810 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 311/889 (34%), Positives = 500/889 (56%), Gaps = 87/889 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L++RL +LT L + ELN L IK+ DI Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++K +S + Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I+LVS + +R ++ + +G+ + D +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808 >gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40] Length = 810 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 500/889 (56%), Gaps = 87/889 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DE+++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L++RL +LT L + ELN L IK+ DI Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD ++K +S + Sbjct: 695 LKEGD-------------------LFVKVLSVK--------------------------- 708 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848 + ++L VSE G+GKR + R G + S + G++V V+ Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSD-KKAGSVVDAIAVS 760 Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 ++D+I+LVS + +R ++ + +G+ + D +VSV + Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDNDS-LVSVSKF 808 >gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413] gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413] Length = 835 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 325/915 (35%), Positives = 504/915 (55%), Gaps = 124/915 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 +H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID PD+ + L+E+I GPDFPTG I+G TGI+ AY TG+G IV+RGV+ Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGETGIREAYITGKGGIVLRGVA 252 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E+ G R I+VTE+PYQVNKA +EK+AELV + R+ I+DLRDESDR+G R Sbjct: 253 TVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR + +L LY T+LQ+ F ++A+ +P + +L +L+ F+ FRE + Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFREHTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA R + + GL A++NLDEV+ I+R +P+ TA+ L + Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCSQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSE Q AIL + L RLT L + +++ E L +I Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---------------MEDEDC-- 532 +LS R LL +K++L S+K + PRRT++ L+ DED Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTEN 526 Query: 533 ----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 E+ ++ ++H GY++R+ + G K + + + DF+ I TH Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQA-RGKALINILSLN-QG--ERITTIMPFPEDESSWN 644 +L ++ G +Y KV +P+ + ++ RG LI +L+ QG E + + + PE+ ++ Sbjct: 579 LLVLTNGGKLYPVKVGDIPLTTGRSPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQ 638 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 ++ TK G ++R L + + R G +KL DE+L + ++L + G+ Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKAGQHLILASSGGR 695 Query: 705 CVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF + ++ GR ++G++ L + ++ V A A+Y Sbjct: 696 LLRFSANDEQLPIMGRTAMGLQAFRLLRNQCMV--GCVNAAQAEY--------------- 738 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 +L V+E+G+ KR + +NR Sbjct: 739 ------------------------------------LLLVTEEGYAKRLPVNQIKSANRG 762 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G ++ +N+ L A+ N + ++ L++++ ++R+ + + I R KG I Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSSEVALLTNRERVVRISTDTVPILPRDGKGETIL 820 Query: 884 STAKDERVVSVERIR 898 +DE+V++V +R Sbjct: 821 QLNRDEKVIAVVEVR 835 >gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 1247 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 311/836 (37%), Positives = 488/836 (58%), Gaps = 86/836 (10%) Query: 65 VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124 V+ + ++V + +GK+HPHG+ A+YDAL RMAQD+S+R LI+GQGNFGS+DGD Sbjct: 490 VDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSIDGDS 549 Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184 AA RYTE RL K + LL D+ KDTVDFRPN+D S EP VL AR+PN+LVNG GIAV Sbjct: 550 QAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSAGIAV 609 Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 GMATNIP HNL EV ++D+ + + L++ ++GPDFPTGA I+ +K Y TG Sbjct: 610 GMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINPENLKKIYETG 669 Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304 RGS+ IR IE+ + IV+TE+PYQVNKAA++++IA+LV+EK+I I+D+RDESD Sbjct: 670 RGSVTIRAKHTIEEVR-KKTAIVITELPYQVNKAALIKQIADLVKEKKIDGISDIRDESD 728 Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 R+G RVVIELKR A+ +V+LN+LY++T LQ+ F+ NM+AL +P+ L LK F+ F Sbjct: 729 REGIRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALVNGEPKLLNLKTYLKEFIEF 788 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R EV++R+T + L KA R H+L GL IA+ N++ V+ I+R S +P A +EL+++ + Sbjct: 789 RREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIA-QELLEKEFG- 846 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS+ Q++AIL+++L RLTGL R+ I +E +L +I Sbjct: 847 ------------------------LSQKQSKAILDMKLQRLTGLEREKIDSEYEALEKDI 882 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544 + +LS+R +IK+++ + R+T IV +++ E I E++V+ ++H Sbjct: 883 EYYRFVLSNREEQKRLIKEDIDEIIKNYGDERKTAIVSKESEIDIESMIEEEEVVIFLTH 942 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 G++ R Y+ Q R G G G+ R+ DFV D+ S+ +L F++ G VY K + Sbjct: 943 KGFIARTSAKSYKTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYWLKAY 1002 Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663 +P RG+++ N L ++ E ++ I+P +D S +++ F T+ G V+R LS Sbjct: 1003 EIPKTEKSTRGQSIRNFLPGMSGAEVVSRIIPV-KDFSEKKDIF--FVTQRGYVKRTSLS 1059 Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +F +G A+ L+ D ++ V ++++ILL +K G+ +RF + +R GR++ G Sbjct: 1060 EFSNPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQM-GRSARG 1118 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+G+ L + D++++ +V D Sbjct: 1119 VKGMLLDEEDRIMAGTVVQPDDV------------------------------------- 1141 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 ++L V EKG+GKR +F + R GKG+ A +S+ + G + Sbjct: 1142 ---------------YLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSE--KTGKIAD 1184 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + + + +I+VS G +IRV +++ + SR T+GV I +K++ VVSV +++E Sbjct: 1185 AITLKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTRGVRIQKLSKEDVVVSVSKVQE 1240 Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/69 (62%), Positives = 53/69 (76%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I VSI DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+ +K Y K A Sbjct: 4 IIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKKSA 63 Query: 76 RISGEVMGK 84 RI GE K Sbjct: 64 RIVGECFVK 72 >gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 818 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 333/900 (37%), Positives = 490/900 (54%), Gaps = 108/900 (12%) Query: 30 LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89 + YA+++I+GRAIPD RDGLKPVHRRIL+ M Q+ + N + KCAR+ GEV+GK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 90 NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGK 148 + A+YDAL R+AQ +S LI+G GNFGS+D DP AA RYTECRL K + LL+DL Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120 Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID- 207 DTVDF PN+DG+ EP VL A+ P +L+NG GIAVGMATNIP HNL E++ C A++ Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180 Query: 208 ---NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-TSG-- 261 + L++++ GPDFPTGA IL G + Y TG G IV+R V+ IEK T+G Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240 Query: 262 ---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 R I+VTE+PYQVNKAA+LEKIA LV EK++ IADLRDESDR G RVVIELKR A Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300 Query: 319 SADVILNQLYRYTSLQSLFSVNMVAL--------NGYKPERFTLIGILKAFVAFREEVVV 370 A V+LN LY+ T LQ+ FS N +AL + P+RFTL + F+ FR E + Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R++++ L K R+H++ GL +A+ +D V++I+R S + + AR L Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREAL------------Y 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 I+L GT S QT AIL+L+L +LT L + + +E L + + Sbjct: 409 IEL-----------GT---SSEQTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHL 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549 L + ++++E + + R++ IVE D D D I V+ V+ GY+K Sbjct: 455 LEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIK 514 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDF---VTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 R+PL + +Q RG +G+ G E V F + H ++L + G Y + +++ Sbjct: 515 RMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQV 574 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664 PI A+G+ + ++L + E IT I+P E DE YVV T+ G ++R L Sbjct: 575 PIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFSDEE-----YVVLTTEQGWIKRTPLDA 629 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F +++ G L+ D + E+DIL+ T G RF + +R GR S GV Sbjct: 630 FEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRP-TGRTSRGV 688 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 R + L +GD + M + +SG +E Sbjct: 689 RAMKLREGDTIADMNV------------------------LSGKNKE------------- 711 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +ILTV+ +G+GKR ++ +FR R G G+ A + E + + Sbjct: 712 --------------YILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCL 757 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904 V D+++I++++ +G ++R ++I R+ GV++ + + SV + + E +D Sbjct: 758 RIVKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEID 817 >gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414] gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414] Length = 836 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 328/915 (35%), Positives = 506/915 (55%), Gaps = 124/915 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 ++ +L ++ +TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID PD+ L EII GPDFPTG I+G +GI+ AY +G+GSIV+RGV+ Sbjct: 193 LGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIVGDSGIREAYTSGKGSIVLRGVA 252 Query: 255 HIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 E K S R I++TE+PYQVNKA +EK+A+LV R+ I+DLRDESDR+G R Sbjct: 253 KTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR + +L LY T+LQS F ++AL +P + +L +L+ F+ FRE+ + Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQPRQLSLRQMLQEFLKFREQTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA R H++ GL A++ LD+++ I+R + + TA+ L R Sbjct: 373 NRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSE Q AIL + L RLT L + +++ E L +I Sbjct: 424 -----------------LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQI 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI----------VEGLLDME----------D 529 +LS R LL +K++L S+K + + PRRT++ V+G+ ++ Sbjct: 467 LLSDRKELLKTLKKDLRSLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNS 526 Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589 D E++++ SH GYV+R+ Q G K ++ + D DF+ + +T + Sbjct: 527 PDAEPPEEVILDFSHRGYVRRL-------QPSGKKSKAENGLPDHDFIIQSDLTATDKEL 579 Query: 590 LFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLN-QG--ERITTIMPFPEDESSWNN 645 L +S G VY V + P RG LI +LS QG E + + + PE+ + Sbjct: 580 LVITSSGKVYPVNVGDIRPTTGRSPRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQ- 638 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 +V TK G ++R L + + R G +KL DE+L + T + +++L + G+ Sbjct: 639 --MVLLTKEGRIKRLTLGELTNLTRRGITILKLKEDDELLFTQLTTPKENLILASSGGRL 696 Query: 706 VRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 ++F ++ GR ++G++ + L K Q++ C Sbjct: 697 LKFAADDQQLPVMGRTAMGLQALRLLKHQQMVG---------------C----------- 730 Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824 +T+ D+ +L V+E+G+ KR + + ++R Sbjct: 731 -------VTAAGEDN--------------------LLLVTEEGYAKRLPVSNLKRADRGN 763 Query: 825 KGIRATD-VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G ++ SK + + A+V + ++ LV++K ++R+PV+ + I +R KG I Sbjct: 764 IGTQSLKFASKTDNLAAMVQAIA---SAEVALVTNKDRVVRIPVDTVPILARDGKGESIL 820 Query: 884 STAKDERVVSVERIR 898 +DER++SV ++ Sbjct: 821 DLNRDERIISVMEVQ 835 >gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120] gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120] Length = 835 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 325/915 (35%), Positives = 504/915 (55%), Gaps = 124/915 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 +H +L ++G++TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID PD+ + L+E+I GPDFPTG I+G GI+ AY TG+GSIV+RGV+ Sbjct: 193 LGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGEAGIREAYITGKGSIVLRGVA 252 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E+ G R I+VTE+PYQVNKA +EK+AELV + R+ I+DLRDESDR+G R Sbjct: 253 TVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR + +L LY T+LQ+ F ++A+ +P + +L +L+ F+ FRE + Sbjct: 313 VVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFRENTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR Y L KA R + + GL A++ LDEV+ I+R +P+ TA+ L R Sbjct: 373 NRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + LSE Q AIL + L RLT L + +++ E L +I Sbjct: 424 -----------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDR 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---------------MEDEDC-- 532 +LS R LL +K++L S+K + PRRT++ L+ DED Sbjct: 467 LLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDEDTEN 526 Query: 533 ----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588 E+ ++ ++H GY++R+ + G K + + + DF+ I TH Sbjct: 527 LSPLEPAEEAILEITHRGYLRRI--------QPGKKSKVENGLLEHDFIIQTNITDTHKE 578 Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQA-RGKALINIL-SLNQG--ERITTIMPFPEDESSWN 644 +L ++ G +Y KV +P + ++ RG LI +L S QG E + + + PE+ ++ Sbjct: 579 LLILTNGGKLYPVKVGDIPPTTGRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQ 638 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 ++ TK G ++R L + + R G +KL DE+L + ++L + G+ Sbjct: 639 ---LILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKPGQQLILASSGGR 695 Query: 705 CVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 +RF + ++ GR ++G++ L + +++ Sbjct: 696 LLRFSTNDEQLPIMGRTAMGLQAFRLLRNQRMV--------------------------- 728 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 G ++ + + L L V+E+G+ KR + +NR Sbjct: 729 -------------------GCVNAAQAEHLLL-------VTEEGYAKRLPVNQIKSANRG 762 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G ++ +N+ L A+ N + ++ L++++ ++R+P + + I R KG I Sbjct: 763 DLGTQSMKF--VNKTDNLAAMVGANTSGEMALLTNRERVVRIPTDTVPILPRDGKGESIL 820 Query: 884 STAKDERVVSVERIR 898 +DE+V++V +R Sbjct: 821 QLNRDEKVIAVVEVR 835 >gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH] gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH] Length = 810 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 289/729 (39%), Positives = 453/729 (62%), Gaps = 32/729 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 4 EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 63 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 64 AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMR 123 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A L+ D+ K TVDFR NYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 124 YTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 183 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL E+ D V ++D+ + + L+EI++GPDFPT A I+ + AY TG+GS+V Sbjct: 184 MAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYNESLIKAYTTGKGSVV 243 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 244 IRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIR 303 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ AF+ R+E+V Sbjct: 304 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISAFIEHRKEIV 363 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +AR++AH+L GL IA+ N+D V+ IIRF+ + A +E + + +N Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDA-KECIIKEFN------ 416 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT + + + E L IK+ D Sbjct: 417 -------------------LSEIQANSILDMKLQKLTSIETEKLEEEFKILLALIKDYED 457 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL+S R++ I+++E++++ + RRT+I+ E +L D + RE+++V ++ G+ Sbjct: 458 ILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 517 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KR+ Y+ Q GGKG ++D D V V+TH + S+ G +Y + + Sbjct: 518 IKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIK 577 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ++G+ + +++L + E I I +E S +N Y++ T +G + R + F Sbjct: 578 DTSRTSKGQNVRELINLGETEEILAIKNC--NELSVDN-YLLITTANGKIARIETEGFKT 634 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I +KLD D + S E ++ I+ +K G F IR+ R + GV G+ Sbjct: 635 VKARGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIRL-THRGTQGVSGM 693 Query: 728 SLAKGDQVI 736 + +GD +I Sbjct: 694 KVREGDVLI 702 Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L +E I+ ++++GF KR ++++ GKG+ + D+ +++ + VN +D Sbjct: 501 DLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLC---VNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + I+ SR +KG Sbjct: 558 FLFMISNEGKLYVINAYGIKDTSRTSKG 585 >gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly] gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly] Length = 815 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 290/729 (39%), Positives = 452/729 (62%), Gaps = 32/729 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A L+ D+ K TV+F+PNYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV D + ++++ D+ + L+ II+GPDFPT A I+ + AY TG+GS+V Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ S D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ F+ R+ ++ Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS + AR +M+ Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT L I + + IK+ D Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL S SR++ +I++E++++ + RRT+I+ E +L D + RE+++V ++ G+ Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV Y+ Q GGKG ++D D V V+TH +L S+ G +Y + + Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S +RG+ + +++L + E I I E S +N Y++ T +G + R + F Sbjct: 583 DSSRTSRGQNIRELINLGEKEEILAIKNCS--ELSVDN-YLLITTANGKIARIETEGFKT 639 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I MKLD +D + S E ++++ I+ +K G F + IR R + GV G+ Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698 Query: 728 SLAKGDQVI 736 + +GD +I Sbjct: 699 KVREGDMLI 707 Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 19/120 (15%) Query: 762 RRLIS-GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 R LI+ G+ EEI ++KN C EL + + ++L + G R + F+ Sbjct: 594 RELINLGEKEEILAIKN------------CSELSV-DNYLLITTANGKIARIETEGFKTV 640 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R + K+++ + + V+ +D+II +S KG N+IR+ R T+GV Sbjct: 641 KS-----RGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV 695 >gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] Length = 810 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 300/827 (36%), Positives = 488/827 (59%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+PNYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + D++ I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+D+AHVL GL IA+ N+DE+++II+ S + A+ L+ Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + +E N L IK+ +I Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDREEILTI---KNSKDFTDDAYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSENDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI V VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1] gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1] Length = 815 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 290/729 (39%), Positives = 452/729 (62%), Gaps = 32/729 (4%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR ++ GQGNFGS+DGDPPAA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K A L+ D+ K TV+F+PNYD S EP VL A +P +LVNG GIAVGMATN Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 + HNL EV D + ++++ D+ + L+ II+GPDFPT A I+ + AY TG+GS+V Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IR HIE+ S D I++T+IPY VNK+++L KIA L++E+++ ++D+RDESDR+G R Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+E+K+G V++N LY YT L+ FS+N +AL P++ L ++ F+ R+ ++ Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS + AR +M+ Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMRE--------- 419 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LSE+Q +IL+++L +LT L I + + IK+ D Sbjct: 420 -----------------FQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547 IL S SR++ +I++E++++ + RRT+I+ E +L D + RE+++V ++ G+ Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 +KRV Y+ Q GGKG ++D D V V+TH +L S+ G +Y + + Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S +RG+ + +++L + E I I E S +N Y++ T +G + R + F Sbjct: 583 DSSRISRGQNIRELINLGEKEEILAIKNCS--ELSVDN-YLLITTANGKIARIETEGFKT 639 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 + G I MKLD +D + S E ++++ I+ +K G F + IR R + GV G+ Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698 Query: 728 SLAKGDQVI 736 + +GD +I Sbjct: 699 KVREGDMLI 707 Score = 37.7 bits (86), Expect = 9.1, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 19/120 (15%) Query: 762 RRLIS-GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820 R LI+ G+ EEI ++KN C EL + + ++L + G R + F+ Sbjct: 594 RELINLGEKEEILAIKN------------CSELSV-DNYLLITTANGKIARIETEGFKTV 640 Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 R + K+++ + + V+ +D+II +S KG N+IR+ R T+GV Sbjct: 641 KS-----RGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIRLTHRGTQGV 695 >gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr] gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr] Length = 810 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 307/829 (37%), Positives = 487/829 (58%), Gaps = 51/829 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A LV+E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S + AR L+ Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D V V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666 S ++G+ + +++L E I TI E D+S Y++ T G + R + +DF Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKELTDDS-----YLLLTTASGKIARFESTDFK 633 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G Sbjct: 634 TVKSRGVIVIKLNDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCG 692 Query: 727 ISLAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + L +GD + + +++ ++ Y +R+ K +S +R +G T S K Sbjct: 693 MKLKEGDLFVKVLAIKENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAG 751 Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 SV I+ E IL VS++ RT + + +GI+ Sbjct: 752 SVVDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +E+ + VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04] gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04] Length = 810 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 305/827 (36%), Positives = 486/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A LV+E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S + AR L+ Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D V V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI E ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKE---FTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLAIRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +E+ + VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus] Length = 545 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 282/570 (49%), Positives = 393/570 (68%), Gaps = 27/570 (4%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++ + V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV +K + Sbjct: 2 QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNL E +D ++DNP++ LME++ GPDFPTG +++G++GI AY TG+GSIV+R Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I L +EKRI I +RDES R+G R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE++R ASA+VILN L++ T LQ+ FS NM+A+ P+ +L IL ++A ++EVVVR Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ +KA RAH+L GL IA+ +LDEV+ IIR S A+ ELM R Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 L+E Q++AIL++RL RLTGL RD I+NE + L I + DIL Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKR 550 + R++ IIK+EL K + RRT ++ G ++ +EDED I ED+V+T+S+ GY+KR Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580 + +R+Q+RGG+G G + D+DFV D+ Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDI 545 >gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 795 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 327/865 (37%), Positives = 492/865 (56%), Gaps = 91/865 (10%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K ARI GEV+GKYHPHG++A+ Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153 Y+ + RMAQ++S R LI+G GNFGS+DGD AA RYTE RL K +++L+ D+ DTV F Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120 Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213 NYD S EP L PN+LVNG GIAVGMAT+IP HNL EVV A IDN DI + Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180 Query: 214 DALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272 D +++ I GPDFPTGA++ + ++ Y TGRGS++IR E+ ++ VVTEIP Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENK-KHDRFVVTEIP 239 Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332 YQ NKA ++EKIAELV++K I I D+RDES+ +G R++IELK+ A+ DV+L++LY+YT+ Sbjct: 240 YQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYTA 299 Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392 LQS FS+N++ LN P L I+K +V F+ V+++R+ + NK R H+L L I Sbjct: 300 LQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALHI 359 Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452 A+ N+D+V+ II+ S E A+ +L + +N E Sbjct: 360 ALDNVDDVINIIKNSKTSEEAKIQLTNK-YN-------------------------FDEE 393 Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL-SSRSRLLGIIKQELLSVKDE 511 Q +AIL++RL RL GL RD I E+ ++ E LDIL +++ ++K +L + D+ Sbjct: 394 QNKAILDMRLQRLVGLERDKITLEMTNIK-ERLTYLDILINTKEEQNNVLKNQLNEIADK 452 Query: 512 LDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570 RRT ++ E L+++EDE+ I ++ +S GY++R+ +R Q+RGG+G S V Sbjct: 453 FGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVS-VN 511 Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGER 629 D + + VLFF++ G VY+ K++ + S ARG ++N L+ L ++ Sbjct: 512 AEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 571 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 IT I+P ++ +N Y+ F T+ G ++R K+S+F INR+GK A+ L D+++SV Sbjct: 572 ITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFA 629 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 T ++ I + + G+ +R S + R GVR + L D V+ Sbjct: 630 TTGQDTIFIANESGKVIRIKESVVNP-QSRVGSGVRALKLETNDVVV------------- 675 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 G IS K I TVS KG Sbjct: 676 ---------------------------------GAISS-------FKLTHITTVSNKGLF 695 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 K+T D+RIS R+GKGI+ ++++ G A+ + D I+++S G LI+ V+ Sbjct: 696 KKTPIDDYRISGRNGKGIKVMNLNQ--RTGKFKAIIDARETDLILIISSDGNLIKTKVSN 753 Query: 870 IRIASRATKGVVIFSTAKDERVVSV 894 I SR GV A ++ + ++ Sbjct: 754 IPSLSRNASGVKAIRLADNQEINAI 778 >gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] Length = 810 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 301/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR ++VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV+++I+ S + A+ L+ Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ ++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDACLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLALRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +G++ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGVQ 793 Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI V VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo] gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo] Length = 810 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 303/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ + A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V++H + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI + VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALC---VNSHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 Length = 522 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 269/514 (52%), Positives = 361/514 (70%), Gaps = 9/514 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 7 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 67 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 127 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 187 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 246 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 247 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 306 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 307 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 366 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ +++ Sbjct: 367 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 426 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 427 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 486 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 L IL S RL+ +I++EL V+++ RRT I Sbjct: 487 LLRILGSADRLMEVIREELELVREQFGDKRRTEI 520 >gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51] gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 808 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 322/888 (36%), Positives = 484/888 (54%), Gaps = 91/888 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ IT S+ + + SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+ +K Y Sbjct: 5 EENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYS 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+ MGKYHPHG+++IYDA RMAQ W+ R LI+GQGNFGS+DGD AA RYTE Sbjct: 65 KSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ + + D+ KD + F+PNYD +EP+VL + +PN+LVNGG GIAVGMA+NIP Sbjct: 125 MRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EVV + IDNP + L+ LME ++GPDFPTG +I+G G AY +GRG + +RG Sbjct: 185 HNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMRG 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + IV+TEIP+QV+K+ + KI +I I+++RDESDR+G R+V+ Sbjct: 245 KAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLVV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 E K+ A IL LY+YT LQ F +N+V P L I ++++ R+EVV+R Sbjct: 305 ECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKEVVLR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S P A+ L+ R Sbjct: 365 RTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SEVQ +AIL+++L LT L D IR E + I E IL Sbjct: 414 ---------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED--MVVTVSHLGYV 548 + +++ IIK EL + ++ RRT I+ E + D D + M V ++ G++ Sbjct: 459 ADINKVYTIIKHELKQIAEQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K++P R+Q +D D + + ++ ++ FF+ G Y K + Sbjct: 519 KQIPTPTRRSQINA----IAFAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVAE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + +G+A+ N+ L + ERI ++ E++ Y VF TK G V R+ + DF + Sbjct: 575 AGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQ---YFVFVTKDGQVMRSPVKDF--L 629 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N AM L +DEI+ V E ++ L + GQ +RF + + GR S GV+G++ Sbjct: 630 NARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGMT 688 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ A+++ AD + +GD Sbjct: 689 LNEGDYVVD-ALLIQPGADGE----------------TGD-------------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFP 846 ++TV+E+G+ KRTS +++ R+G+GI D K + +L+ V P Sbjct: 712 -----------LITVTEQGYVKRTSLVEYKPQGRAGRGIAIAKIDAEKTGNLVSLIQVGP 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D + ++ GT+ V ++ SR G + + ++ +V V Sbjct: 761 KEDK-LLHIIQAGGTVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807 >gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens] Length = 915 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 330/927 (35%), Positives = 488/927 (52%), Gaps = 119/927 (12%) Query: 6 ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65 + S EE + + E+ S++ YA++ ILGRA+PD RDGLKPVHRRILF M ++ + Sbjct: 54 LRSTTEEHTAPIPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMRELNL 113 Query: 66 EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125 Y KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+ + L++G GNFGSVD DPP Sbjct: 114 TPGTPYRKCARVVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDADPP 173 Query: 126 AAERYTECRLQKAAHFLL---DDLGKD----------TVDFRPNYDGSFQEPVVLCARYP 172 AA RYTEC+L K A+ L DDLGK +V+F N+D S EP VL AR P Sbjct: 174 AAMRYTECKLTKFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPARVP 233 Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----DALMEIIRGPDFPTG 228 +LVNG GIAVGMAT+IP HNLGEV D + V D L + PDFPTG Sbjct: 234 VLLVNGAAGIAVGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFPTG 293 Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288 +I+G TG+ AYATG+GSIVIR +H EK R IV TE+PYQV K+ +L K A+ + Sbjct: 294 GLIMGTTGVARAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTADAI 353 Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY- 347 +RI IADLRDES R+G RVV ELKR A A+++L+ L++ T LQ+ F N+VA++ Sbjct: 354 NARRIEGIADLRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDHAL 413 Query: 348 --------KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399 P R TL L+ +++FR + V R + +A R H++ GL +A AN+D Sbjct: 414 NDDGDDVRSPVRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANVDA 473 Query: 400 VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459 VV +IR S P A+ +L++ I + G LSE Q A+L Sbjct: 474 VVALIRASDAPADAKAKLVE------------------GGAIPAMGA--LSEDQASAVLA 513 Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519 L L+RLT L D + +E L ++++ ++S + + + E+ ++K TPRR+ Sbjct: 514 LTLSRLTTLEADKLDSERKDLEVKLEGLRKLMSEDAAVYDAVVDEVAAIKKAYPTPRRSE 573 Query: 520 IV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578 IV +G ++ DED I V V+ GYVKR L + AQ RGG+GR+ + + Sbjct: 574 IVFDGDAELRDEDVIENARSAVLVARDGYVKRTSLEEFGAQSRGGRGRNAL---QGGTLR 630 Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM---- 634 L H ++L + G Y + + +P S ARG + ++L +++ RI ++ Sbjct: 631 HLVTCHDHDTLLCIADTGVAYGVRAFNVPQASRAARGVPVPSVLPVDRSTRIKGLLAVAH 690 Query: 635 -----PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 P P D+ + L++V T++G V++ L+ F + G IA+KL D + Sbjct: 691 DTLQNPKPGDD---DELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLGEGDAVTHARL 747 Query: 690 CTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 C + ++L T G RF S +R + R + GVR ++L GD ++ M + Sbjct: 748 CRASDSLILATAAGMVTRFAADDSELRSMS-RTTRGVRAMNLRDGDAIVKMDVA------ 800 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 GD +L ++ +G Sbjct: 801 ------------------GGD----------------------------HSHVLVLTAEG 814 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 +GKR + D R R G G+ A K + LV++ PV ND++++V++ G ++R+ Sbjct: 815 YGKRVALADLRSQKRGGMGVSAIKFKKKGD--DLVSICPVAPNDEVMVVTESGVIVRMDA 872 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894 + SR GV++ AKD+ +V + Sbjct: 873 ASVTAQSRTATGVLVQKAAKDDALVDL 899 >gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067] Length = 722 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 310/772 (40%), Positives = 461/772 (59%), Gaps = 86/772 (11%) Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186 A RYTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGM Sbjct: 1 AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60 Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 ATNIPTH+LGEV+DG +A+ ++PDI + LME I GPDFPT +I+GR+GI+ AY +GRG Sbjct: 61 ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRG 120 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 SI +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR Sbjct: 121 SITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 180 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ Sbjct: 181 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 240 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 V+ RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 241 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN--- 296 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 297 ----------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 334 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T++ Sbjct: 335 LKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKR 394 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY+KR+PLS YR+QRRGG+G G+ ++DFV L STH ++LFF++ G VY+ K + Sbjct: 395 GYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYE 454 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 +P A+G +IN+L + E++ ++ E ++ Y+ F TKHG V+R LS F Sbjct: 455 VPEYGRTAKGIPIINLLGIESQEQVNAVINLSE---FTDDNYLFFTTKHGVVKRTTLSQF 511 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 +I +SG A++L DE++SV+ ++++ TK GQ + FP + IRV GR + GVR Sbjct: 512 AKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVR 570 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 GI L +GD+VI M + L++D V Sbjct: 571 GIRLREGDEVIGMEV----------------------------------LEDDEKV---- 592 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L V+EKG+GK+T + + + NR G G++ +++ N G LVA+ Sbjct: 593 ---------------LVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMK 635 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 V + ++L++ G LIR ++ + R+ GV + +DE+V +V ++ Sbjct: 636 TVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 687 >gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] Length = 810 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 302/827 (36%), Positives = 485/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++ + A +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS++I Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVII 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V++H + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGAQEEILTI---KNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLAVRENPYLLIISENGYGKRLSVSK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI + VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALC---VNSHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1] gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1] Length = 810 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 302/827 (36%), Positives = 486/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQ++SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + D+ I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVL----------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + +EL L IK+ DI Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +L+L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELLNLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD ++ + +++ ++ Y +R+ M +S +R +G T S K SV Sbjct: 695 LKEGDLLVKVLAVRENPYLLIVSENGYGKRLN-MSKISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI V VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304] gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304] Length = 786 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 320/879 (36%), Positives = 497/879 (56%), Gaps = 101/879 (11%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I++E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+ N+ Y K ARI GE Sbjct: 7 ISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVGE 66 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG++A+YDAL RMAQD+ +R L++GQGNFGS+DGD PAA RYTE RL K A Sbjct: 67 VLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIAE 126 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+GK+TVDF PN+D + +EPVVL ++ PN+L+NG GIAVGMATN+P HNL EV + Sbjct: 127 EMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVCE 186 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A I NP+I ++ LM+ ++GPDFPTG VI+G GIK AY TGRG I +RG +EK + Sbjct: 187 GIIAYIQNPEISVEELMKYVKGPDFPTGGVIVGVDGIKEAYLTGRGKITVRGKVEVEKNA 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 I++ E+PY VNKA ++E IAEL ++ RI +I +RDESDR+G RVVIELK G++ Sbjct: 247 -----IIIREVPYMVNKAKLVESIAELAKD-RIDEIRTIRDESDREGIRVVIELKSGSNP 300 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 + ++ +LY Y++LQ+ F + +AL +P L ++ FV R E++ RRT Y L KA Sbjct: 301 ETVIKKLYAYSNLQTTFGIINLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEKA 360 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++R H++ GL + V ++D + +I+ S +P A+ +L++ Sbjct: 361 QERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIE--------------------- 399 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 T LSE Q A+L++RL +LT + D + E SL +I E IL+S ++ I Sbjct: 400 -----TYSLSEKQADAVLQMRLQKLTAMEIDALLKEYESLKEKIAEYESILASPEKIDAI 454 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I E+ ++++ RRT I+ + ++ D I E+ V ++ GY KR+ L +R Q Sbjct: 455 IADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQS 514 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG G G + D + I ++ +L F++ G + + +P ARG L Sbjct: 515 RGGVGVIGASVSPGDEIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKR 574 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 ++ L GE++ + + + +N V + G +++ L +F R+G A S Sbjct: 575 LIRLENGEKVVSALGVKD----FNGKIAVILSPDGYIKKVPLIEFENAKRAGVKA----S 626 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 EI VE + + I + T G VR + + + GRN+ GV + L GD Sbjct: 627 AGEIQQVE-LLEGDSIFIATANGNVVRLRETDVPEY-GRNAKGVIAVRLRDGD------- 677 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 RI +M S+ EG +++ Sbjct: 678 ----------RIAWM-----------------------SASEG--------------EYL 690 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 L ++E+G+GKR +FR R G+ +I+E +A + +++ ++S+ G Sbjct: 691 LMLTERGYGKRCDVNEFRFIGRGSMGMIGY---RISEKTGKLAFISACNGEEVFIMSEDG 747 Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 IR+ + I + R + GVV+ K + V+++++R+ Sbjct: 748 YCIRIDSSTIPVQGRYSSGVVV--ARKGVKRVALKKVRK 784 >gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 817 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 316/874 (36%), Positives = 485/874 (55%), Gaps = 90/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG+A Sbjct: 21 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGDVMGNYHPHGDA 80 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +LI+G GN+GS D DP AA RYTE RL + A LL D+ K TV Sbjct: 81 SIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAMELLRDIEKRTV 140 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +R+PN+LVNG GI+ G AT IPTHNL EV+D CVA++D P++ Sbjct: 141 LFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVIDACVAMMDQPEM 200 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 ++ LM II+GPDFPTG +I+G GIK+AY +G+G I +R + IE G R+QI+VTEI Sbjct: 201 TVEQLMGIIKGPDFPTGGIIMGEEGIKDAYTSGKGRIYVRAKTSIESVRGGRQQIIVTEI 260 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ I + +K++ I+++RDES R G R+V++LK+ A A IL L + T Sbjct: 261 PYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLKKDADAQGILAYLLKKT 320 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P++ + +L+A++ +++VV+ RT+Y L KA DRAHVL GL Sbjct: 321 DLQVTYNFNMVAIVNKTPKQLGIREMLQAYIDHQKDVVIHRTQYDLEKAEDRAHVLEGLV 380 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDE++ I+ S N + A+ L+++ +E Sbjct: 381 KALNILDEIIETIKASKNRQDAQNNLVEK--------------------------YAFTE 414 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AIL L+L RLT L + ELN + +I IL S +L +IK+E++ ++D+ Sbjct: 415 RQADAILTLQLYRLTNLEVTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDK 474 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I + L + E + ED++VT+S GY+KRV + Y R GG+ + Sbjct: 475 YGIDRRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSY--TRSGGELHT-T 531 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 +++ DFV L V+T S+L F++ G + V ++P + G A++N++ +++ +R Sbjct: 532 GLKEGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDR 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 I ++P E S +L VF TK G V+R +L +++ + +A K+ DE++ VE Sbjct: 592 IVNVIPVKNFEESGKSL--VFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEV 649 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 D+LL TK G +RF + GR + GVRGI L GD+VIS A++ Sbjct: 650 SESNKDLLLVTKQGMSIRFREDEVNPM-GRAAGGVRGIQLKDGDEVIS--------AEW- 699 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 I GD E +L +S++G+ Sbjct: 700 ---------------IFGDEGE----------------------------LLVISDRGYA 716 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLIRV 865 KRT +D+ + R GKGI + + + + L+A F V + I + G + Sbjct: 717 KRTLVFDYPLQARGGKGILTFEFKEGKRVRSNGTELIASFLVKMDYDITAYLNNGEQVIF 776 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 + + R G V+ + + + ++R+ E Sbjct: 777 STEKAPLDDRKATGKVVIPVGRTDSITHIQRMPE 810 >gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2] Length = 808 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 322/888 (36%), Positives = 481/888 (54%), Gaps = 91/888 (10%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ IT S+ + + SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+ +K Y Sbjct: 5 EENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYS 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K AR+ G+ MGKYHPHG+++IYDA RMAQ W+ R LI+GQGNFGS+DGD AA RYTE Sbjct: 65 KSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 R+ + + D+ KD + F+PNYD +EP+VL + +PN+LVNGG GIAVGMA+NIP Sbjct: 125 MRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EVV + IDNP + L+ LME ++GPDFPTG +I+G G AY +GRG + +RG Sbjct: 185 HNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMRG 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE + IV+TEIP+QV+K+ + KI +I I+++RDESDR+G R+V+ Sbjct: 245 KAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLVV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFS-VNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 E K+ A IL LY+YT LQ F +N+V P L I +++ R EVV+R Sbjct: 305 ECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVLR 364 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S P A+ L+ R Sbjct: 365 RTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR----------- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SEVQ +AIL+++L LT L D IR E + I E IL Sbjct: 414 ---------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESIL 458 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVRED--MVVTVSHLGYV 548 + +++ IIK EL + D+ RRT I+ E + D D + M V ++ G++ Sbjct: 459 ADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K++P R+Q +D D + + ++ ++ FF+ G Y K + Sbjct: 519 KQIPTPTRRSQINA----IAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAE 574 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + +G+A+ N+ L + ERI ++ E++ Y VF TK G V R+ + DF + Sbjct: 575 AGAKEKGRAVNNLFPLPEEERIVAMVSLREEKEGQ---YFVFVTKDGQVMRSPVKDF--L 629 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 N AM L +DEI+ V E ++ L + GQ +RF + + GR S GV+G++ Sbjct: 630 NARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGMT 688 Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788 L +GD V+ A+++ AD + +GD Sbjct: 689 LNEGDYVVD-ALLIQPGADGE----------------TGD-------------------- 711 Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGALVAVFP 846 ++TV+E+G+ KRTS +++ R+G+GI D K + +L+ V P Sbjct: 712 -----------LITVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDAEKTGYLVSLIQVGP 760 Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 D + ++ G + V ++ SR G + + ++ +V V Sbjct: 761 KEDK-LLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807 >gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi] gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi] Length = 810 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 304/827 (36%), Positives = 483/827 (58%), Gaps = 47/827 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 5 ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE ++++ +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ R I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ V+ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNVIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV+ II+ S + AR L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L+++L +LT L + ELN L IK+ DI Sbjct: 413 --------------ANFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + +R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D V V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI E ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTIKNSKE---FTDDSYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 G I +KL+ +D + S E ++ ++ +K G F +R+ R + GV G+ Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVRL-TNRGTQGVCGMK 694 Query: 729 LAKGDQVISMA-------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 L +GD + + +++ ++ Y +R+ K +S +R +G T S K SV Sbjct: 695 LKEGDLFVKVLAIRENPYLLIISENGYGKRLSISK-ISELKRGATGYTSYKKSDKKAGSV 753 Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828 I+ E IL VS++ RT + + +GI+ Sbjct: 754 VDAIAVSEDDE-------ILLVSKRSKALRTVAGKVSEQGKDARGIQ 793 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +E+ + VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALC---VNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + +VS++G L + EI+ +SRA+KG Sbjct: 558 YLFMVSNEGKLYLINAYEIKDSSRASKG 585 >gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228] Length = 794 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 313/885 (35%), Positives = 495/885 (55%), Gaps = 102/885 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRILF ++G+ +K + K A Sbjct: 5 IYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAHKKSA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GK+HPHG++A+YDA+ RMAQD++ R LI+GQGNFGS+DGD AA RYTE +L Sbjct: 65 RLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYTETKL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL ++ + TV+F N+DGS QEP VL ++ PN+LVNG GIAVGM+T+IP HNL Sbjct: 125 TEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIPPHNL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 GEV+D V ++D P+ L+ +++ + GPDFPTGA I+G GIK AY +G+G I +R S Sbjct: 185 GEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASIIGNDGIKAAYQSGKGKITLRAKS 244 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK + +++TEIPYQVNK+ ++E+IAELV + +I ++DLRDESD++G R+VIEL Sbjct: 245 KIEKKKRHK-NLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIRIVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K A ++ LN+LY+YT+LQ+ F +N++A+N KP L+ IL F+ FR+E++ +K Sbjct: 304 KANADPELTLNRLYKYTNLQNNFRINLLAINDKKPVVMGLLEILNHFLDFRKEIIKNHSK 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA +R H+L GL A+ LD V+ +IR S A++E + I Sbjct: 364 YNLTKAENRYHILEGLKKAIDQLDIVIDVIRNS----EAKKEAKAKLVKKLKI------- 412 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 SE Q ++ILE++L RL G+ + + E L +IK +IL++ Sbjct: 413 ---------------SERQAQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNE 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L +++ EL +K + PRRT I+ + ++ D I + ++++S+ G +KR Sbjct: 458 EELKSVLRAELKEIKKKFSDPRRTDIIADDSKAEITKNDLIKEKKAIISLSYRGIIKRN- 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y+ R D++ S+ +LFFS+ G VY +V + Sbjct: 517 -DEYKNLRTA----------KNDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGL 565 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 A G+ L L + E I + ++++ N Y F T++G ++R ++ ++ + N S Sbjct: 566 ATGENLSKYLQIPINESIIDLNILSKNKAKTKNKYYTFVTENGLIKRTEVDEY-RTNYSH 624 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 A+KLD D++++VE + +D+++ +K G +RF S+ GRN++G R I+L K Sbjct: 625 IRAIKLD-EDQLVNVEKTDEASDLIVISKKGYLIRFKGSSFST-TGRNTLGSRAINLIKN 682 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792 D+V+ S+ E N Sbjct: 683 DKVLYF----------------------------------------STFENN-------- 694 Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 FI+++SE G + +F R+GKG R N+ L D+ Sbjct: 695 -----SFIISISENGRANKIKLSEFETQKRNGKGNRIFS----NKSYKLAGAVKAKAGDK 745 Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897 I++ + G + + V++I S A I E++ +V++I Sbjct: 746 ILIAAKNGEIYEIEVDQIPETSPAGNMYQITKELDFEKITTVKKI 790 >gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis] Length = 726 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 294/686 (42%), Positives = 416/686 (60%), Gaps = 39/686 (5%) Query: 64 GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS D Sbjct: 1 GFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 60 Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183 PPAA RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG GGIA Sbjct: 61 PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 120 Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKN 239 VGMATNIP HNLGE+ + +DN + D L A+ME ++GPDFPT +I+G GI + Sbjct: 121 VGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIAD 180 Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299 AY TGRGSI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ I+++ Sbjct: 181 AYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNI 240 Query: 300 RDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L ++ Sbjct: 241 EDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLI 300 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 + +V + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 301 RHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR---- 356 Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478 + LI+L+D + E+Q +AIL+++L RL L R I ++L Sbjct: 357 ---------QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLA 394 Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538 + EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I RED+ Sbjct: 395 KIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDV 454 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G V Sbjct: 455 XXXXXXXXXXXXXXXXLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRV 514 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 Y+ K + LP S ARG+ + N+L+ ERI ++ S + Y+V AT++G V+ Sbjct: 515 YRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNGLVK 571 Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRV 715 + KL+DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A+R Sbjct: 572 KTKLTDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRP 630 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIV 741 GR + GV+G+ D ++S+ +V Sbjct: 631 M-GRATSGVQGMRFNADDYLLSLNVV 655 >gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796] Length = 804 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 302/881 (34%), Positives = 499/881 (56%), Gaps = 97/881 (11%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + +E+++SYL YA++VI+GRAIPD+RDGLKPV RRI++ M +MG+ ++K + KCAR+ GE Sbjct: 8 VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GK+HPHG+ A+YDAL RMAQD++ R LI+G GNFGS+DGD AA RYTE RL K ++ Sbjct: 68 VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 L+ ++G + V + N+DGS +EP VL A++P +L NG GIAVGMAT+IP HNLGE++D Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 + ++ NP + + L++++ GPDFPTG +I+G+ GIK + TG+G I++RG IE S Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIVGKNGIKEYFLTGKGKIILRGRHKIEMGS 247 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 ++V++EIPY VNKA ++EKI +L++EKR+ ++++RDES R+G R+V++LK+GA++ Sbjct: 248 -KTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGANS 306 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 + I+ +LY++T++Q F V M++L P+ + +L F+ FR+++ +R + +L Sbjct: 307 EKIVKKLYKHTTMQITFGVIMLSLVAGVPKVLPVKDVLLHFLTFRKDIQRKRLEKILEDL 366 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 + R +L L+ A+ +D+V+ II+ S NP A++ L + Sbjct: 367 KKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCE--------------------- 405 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 + +SE + IL+LRL RLT L R+ I +L +EIKE L+ + L I Sbjct: 406 -----FLQISEEGAQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEI 460 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVPLSVYRAQ 559 ++ EL+ +K RRT I + + + + E +++VT+S LG++KR+ V+ Q Sbjct: 461 LENELVEIKSNFADKRRTEISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQ 520 Query: 560 RRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 +GGKG G+ +D + ++S +LF SS G Y + +P S +RG Sbjct: 521 NKGGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTG 580 Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677 + NIL L++ E+IT ++ E+E + ++ AT G +++ KL + + R+G IA+K Sbjct: 581 IANILPLSEDEKITFMVQIKEEEIKKD---IILATSMGYLKKIKLENIVSKRRNGVIAIK 637 Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 L+ + ++ +E LL + G + +R G NS GV G+ L+K D+++ Sbjct: 638 LNDSESVVGACMVCEEK-FLLYSSNGFATLANLKDLRNM-GNNSHGVIGMRLSKDDKLLG 695 Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797 + D+ Y Sbjct: 696 IV----PDSKY------------------------------------------------- 702 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 + + + G GK+ SS +F R KG+R VSK L + + +I+ + Sbjct: 703 --FIVIDKNGNGKKVSSDNFTSHKRGTKGVR---VSK----NKLATILNYKEGMDLIIYT 753 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898 +KG +IR+ ++ ++ SR KG+ + K + V+ +R Sbjct: 754 EKGKVIRIDIDSVKQLSRNAKGIKLQKLDKADSVLDATIVR 794 Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 4/108 (3%) Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 + I+T+S+ GF KR F N+ GKGI S + ++ +++ D+I+ +S Sbjct: 498 EVIVTISKLGFIKRMKKDVFERQNKGGKGIDGIQKSSAIQDRIQTSIV-LSNKDRILFIS 556 Query: 858 DKG---TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 KG TL+ + E SR T I ++DE++ + +I+E EI Sbjct: 557 SKGRAYTLLAFSIPEFSRTSRGTGIANILPLSEDEKITFMVQIKEEEI 604 >gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1] gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1] Length = 825 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 305/840 (36%), Positives = 491/840 (58%), Gaps = 56/840 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + I E++ +L Y+++VI+ RA+PDL+DGLKPVHRRI++ M +G+ +K + K A Sbjct: 13 IKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITADKPHKKSA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+YD++ RMAQD+S R L++G GNFGS+DGD AA RYTE RL Sbjct: 73 RIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARL 132 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K ++F++ D+ +TV F NYD S +EP L +PN+L NG GIAVGMAT+IP HNL Sbjct: 133 AKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIAVGMATSIPPHNL 192 Query: 196 GEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 EV+ A IDN DI +D +++ I GPDFPTGA++ ++ Y TGRG++ IR Sbjct: 193 REVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIRMREGYKTGRGAVTIRAKV 252 Query: 255 HIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 +E+ DR + ++TEIPYQ NKA ++E+IAELV+ K++ I+D+RDES+ +G R+VIE Sbjct: 253 ALEEN--DRHARFIITEIPYQTNKAKLIERIAELVKTKQLEGISDIRDESNYEGIRIVIE 310 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 L+R ++ DV+L++LY++T+LQ+ +S+N+++L+ P L I+K +V F+ V+++R+ Sbjct: 311 LRRDSNPDVVLSKLYKFTNLQTTYSLNLLSLHNNIPVLLDLKSIIKHYVDFQINVIIKRS 370 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 + +K R H+L L A+ N+D +V I+R SP A+ +L + Sbjct: 371 IFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTE-------------- 416 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD---- 489 G D E Q +AIL++RL RL GL R I+ E+ +IKE +D Sbjct: 417 ------AFGFD------EEQNKAILDMRLQRLVGLERGKIQQEM----AQIKERIDYLTL 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548 ++S + ++K +L + ++ RRT + EGL+D+EDE+ I ++ +S GY+ Sbjct: 461 LISDETEQNNVLKNQLSEIAEKFGDNRRTETIDEGLMDIEDEELIPDVKTMILLSDEGYI 520 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 +RV +R Q+RGG+G S V +ED + + VLFF++ G V++ K + + Sbjct: 521 RRVDPEEFRVQKRGGRGVS-VNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQ 579 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 S ARG ++N L+ L G++IT I+P + N Y+ F T+ G +++ +S F Sbjct: 580 YSRTARGLPIVNFLNGLTAGDKITAILPLRNVKEKMN--YLTFITEKGMIKKTDISLFDN 637 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 IN++GKIA+ L D++++V T E+ I + K G+ +R + +R + R + GV+ I Sbjct: 638 INKNGKIAINLKEDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLS-RTASGVKAI 696 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L + D V+ E I + + ++ + E S +N ++ Sbjct: 697 KLDENDVVVGAVTSFGI-----ENITTISSKGSFKK--TNIDEYRISGRNGKGIKVMNLN 749 Query: 788 ERCQELKL-----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 E+ + K + + +S G +T + D + R+ G+R +S+ N+I A++ Sbjct: 750 EKTGDFKSIIAARETDLVCIISTDGNLIKTKASDIPVLGRAAAGVRGIRLSEGNKIQAVM 809 >gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 501 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 263/494 (53%), Positives = 351/494 (71%), Gaps = 9/494 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 487 Query: 487 CLDILSSRSRLLGI 500 L IL S RL+ + Sbjct: 488 LLHILGSADRLMEV 501 >gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata] gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata] Length = 744 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 317/809 (39%), Positives = 455/809 (56%), Gaps = 89/809 (11%) Query: 99 RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158 R+AQ WSLR L++G GNFGS DPPAA RYTE RL A +L D+ +DTVDF PNYD Sbjct: 2 RLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNYD 61 Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LD 214 G QEP +L +R+PN+LVNG GGIAVGMATNIP HNL EV DG + +PD L+ Sbjct: 62 GRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELLE 121 Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274 AL+E+I+GPDFPT +I+GR GI++AY TGRGSI +R V +E+ G R Q+VVTE+PYQ Sbjct: 122 ALLELIKGPDFPTAGLIVGRQGIEDAYRTGRGSIRMRAVVQVEENKG-RTQLVVTELPYQ 180 Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSL 333 VN + EKIAELVR+ RI I+D+RDE S R G R++I+LKR A A V+LN LY++T L Sbjct: 181 VNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHTQL 240 Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393 Q F VNM+A+ P L +++ +V + +V+VRRT+Y L KAR+R HVL GL IA Sbjct: 241 QDTFGVNMLAIVDGVPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGLLIA 300 Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453 + +LDEV+ +IR + + + AR +LM R LSE+Q Sbjct: 301 LDHLDEVINLIRNAESADAARGQLMDR--------------------------FSLSEIQ 334 Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513 AIL+++L RL L R I +E L +I E IL+S +R II +EL + D Sbjct: 335 AVAILDMQLRRLAALERQKIIDEAAELRAKIAELEAILASPARQREIIGEELTEIVDRFG 394 Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573 RRTR+V DM ED I RED+VVTV+ GY KR +YR+QRRGGKG G +R+ Sbjct: 395 DERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALRE 454 Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633 +D V F+ +TH +LFF++ G VY+ K LP + A+G+ + NIL+ Q ERI + Sbjct: 455 DDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEV 514 Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 M + +++ Y+V AT+ G ++ L++F G +A+ L DE+++ + Sbjct: 515 MAIKDYQAAP---YLVLATRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAG 571 Query: 694 NDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752 +D+LL ++ Q +RF ++ GR + GV G+ D++++M +V Sbjct: 572 DDLLLVSRQAQSIRFHADDEQLRPMGRATSGVIGMRFDSDDELLAMEVV----------- 620 Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812 E N+ L + G+ K+T Sbjct: 621 -------------------------PPESEANL---------------LVATSGGYAKQT 640 Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872 S ++ + R GKG+ + ++ G LV V+ +DQ+ ++ G ++R ++R Sbjct: 641 SLGEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVSPDDQLYAITSNGGVLRTVARDVRR 698 Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901 A R T GV + +VV V R ++E Sbjct: 699 AQRQTMGVRLIDLEAGVQVVGVARNADAE 727 >gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790] gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790] Length = 789 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 313/873 (35%), Positives = 481/873 (55%), Gaps = 96/873 (10%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++NSYL YA++VI+ RAIPD+RDGLKPV RRI++ M ++ + +K Y K ARI GE Sbjct: 5 IEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVGE 64 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 MGKYHPHG++AIYDALARM+QD+SLR L++GQGNFGS+DGD PAA RYTE RL + A Sbjct: 65 TMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIAE 124 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 ++ D+ K+TV F PN+DGS EPV ++ P +L+NG GIAVGMATN+ HNL EV D Sbjct: 125 EMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVCD 184 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 ID+ D L L++ I+GPDFP G +I + + Y TG G ++ RG Sbjct: 185 AIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKDMIDIYKTGHGKVICRG-----SIE 239 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 + ++I++ +PY +NKA ++ +A LV +I +I+D++DESDR G R+VI++K Sbjct: 240 AEDKRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDRI 299 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 D+++NQLY T L++ SV + L P L ++K F+ FR +V+ +R++Y L K Sbjct: 300 DLVVNQLYEKTQLETSISVTNLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKKL 359 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +R H+L GL IA+ N+D V++IIR S + +AR L++ Sbjct: 360 NERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKE-------------------- 399 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 + L+E Q AIL++RL RLT L ++ E++ + +I+ D++++ + + Sbjct: 400 ------LSLTEAQANAILDMRLQRLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKNV 453 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 +K EL +K + RRT ++EG + D ED I E+ V+ +S G +KRV L Y++Q Sbjct: 454 LKAELDEIKKQYGDRRRTEVIEGEISRRDEEDLIPNEESVIILSEKGLLKRVSLDEYKSQ 513 Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619 RRGG+G RD D V + H ++ FF++ G V KEK +R+ +A G + Sbjct: 514 RRGGRGII-TNTRDNDSVKSVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRDRKALGVSGN 572 Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679 L LN E I I+ PE+ ++ TK+G +++ +S+ + + +SG + L Sbjct: 573 KFLKLNDNEIIRQIIKSPENLEDL----LIIVTKNGFIKKTNISEILDMRKSGIKIINLA 628 Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739 + DE++SV + + I + G+ F +S R+S GV+ + L G VIS Sbjct: 629 NNDEVVSVSEISGSSKIFVAASNGKAAVF-LSDEVPLTSRSSRGVKSMKL-NGSYVISAF 686 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 V K+D + Sbjct: 687 PV----------------------------------KDDDT------------------- 693 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQIILVSD 858 IL+++E G GKRT + +F +R G+ + K NE G LV PV D+D+II+V+ Sbjct: 694 ILSITENGLGKRTRATEFPEHHRGSSGVY---LFKENEKTGKLVMALPVKDDDEIIIVTK 750 Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 IR+ ++I I SR GV + +++ + Sbjct: 751 NDQTIRIKSSDISILSRFASGVRLVGLTENDSI 783 >gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis] Length = 718 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 292/682 (42%), Positives = 413/682 (60%), Gaps = 39/682 (5%) Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS DPPAA Sbjct: 2 DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 61 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG GGIAVGMA Sbjct: 62 MRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMA 121 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243 TNIP HNLGE+ + +DN + D L A+ME ++GPDFPT +I+G GI +AY T Sbjct: 122 TNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIADAYKT 181 Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302 GRGSI +RGV +E+ S R +V+TE+PYQVN + IA+ VR+ ++ I+++ D+ Sbjct: 182 GRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIEDQS 241 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G R+VIELKR A A V+LN LY++T LQ+ F NM+A+ P L +++ +V Sbjct: 242 SDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRHYV 301 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 + +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 302 DHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR-------- 353 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 + LI+L+D + E+Q +AIL+++L RL L R I ++L + Sbjct: 354 -----QGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEA 395 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 EI + DIL+ R GI++ EL + ++ RRTRIV D+ DED I RED Sbjct: 396 EIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDXXXXX 455 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602 YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K Sbjct: 456 XXXXXXXXXXXXXYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAK 515 Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662 + LP S ARG+ + N+L+ ERI ++ S + Y+V AT++G V++ KL Sbjct: 516 AYELPEASRTARGQHVANLLAFQPEERIAQVIQI---RSYEDAPYLVLATRNGLVKKTKL 572 Query: 663 SDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGR 719 +DF NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A+R GR Sbjct: 573 TDF-DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GR 630 Query: 720 NSVGVRGISLAKGDQVISMAIV 741 + GV+G+ D ++S+ +V Sbjct: 631 ATSGVQGMRFNADDYLLSLNVV 652 >gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23] gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23] Length = 662 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 273/680 (40%), Positives = 424/680 (62%), Gaps = 31/680 (4%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+ +K Sbjct: 5 ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR +I GQGNFGS+DGDPPAA RY Sbjct: 65 FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +++K +++ D+ K+TV+F+ NYD S EP ++ + +P +LVNG GIAVGMATN+ Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 HNL E+ D V ++DN + + L++I++GPDFPT I+ + AY TG+GS+VI Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R HIE+ + DR I+VTEIPY VNK+A+L K+A L +E+++ + D+RDESDR+G R+ Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+E+KRG VI+N LY YT + FS+N +AL P++ L +L F+ R+ ++ Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S + A+ L+ Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++L++RL +LT L + ELN L IK+ DI Sbjct: 413 --------------SNFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548 L + R++ II++E +++ + RRT+I+ E +L D + +E++VV ++ G++ Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR+ + Y+ Q GGKG S + D D + V+TH + S+ G +Y + + Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 S ++G+ + +++L E I TI + ++ Y++ T G + R + +DF + Sbjct: 579 SSRASKGQNISELINLGDQEEILTI---KNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635 Query: 669 NRSGKIAMKLDSRDEILSVE 688 G I +KL+ +D + S E Sbjct: 636 KSRGVIVIKLNDKDFVTSAE 655 Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 54/88 (61%), Gaps = 3/88 (3%) Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 +L KE ++ +++KGF KR S ++++ GKG+ + D++ +EI V VN +D Sbjct: 501 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEI---VIALCVNTHD 557 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG 879 + ++S++G L + EI+ +SRA+KG Sbjct: 558 YLFMISNEGKLYLINAYEIKDSSRASKG 585 >gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71] gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71] Length = 689 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 295/747 (39%), Positives = 440/747 (58%), Gaps = 85/747 (11%) Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207 K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP HNLGE +D V+D Sbjct: 5 KNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMD 64 Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267 NP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R + IE T RE+IV Sbjct: 65 NPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIV 124 Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327 VTE PY VNK + E I LV+EKRI I +RDES+R+G R VIE+KR ASA+VILN L Sbjct: 125 VTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNL 184 Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387 ++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVRRT++ KA RAH+L Sbjct: 185 FKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHIL 244 Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447 GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 245 EGLLIALDHIDEVIRIIRASETDAEAQAELMSK--------------------------F 278 Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 LSE QT+AIL++RL RLTGL RD I++E + L I + DIL+ R+ IIK EL Sbjct: 279 KLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDE 338 Query: 508 VKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566 VK + RRT ++ G +L +EDED I D+++T+S+ GY+KR+ + AQ+RGG+G Sbjct: 339 VKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 398 Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626 G ++D+DFV +L STH +LFF++ G VY+ K + +P A+G ++N+L L++ Sbjct: 399 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 458 Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 E I T++ D S ++ Y+ F T+HG V+R + +F I ++G A+ L DE+++ Sbjct: 459 DESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELIN 516 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 V + DI++ TK G VRF SA+R + R + GV+G++L +GD V+ +++ Sbjct: 517 VLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGASLI----T 571 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 D DE +L ++EK Sbjct: 572 DQDE-------------------------------------------------VLVITEK 582 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G+GKRT + ++ R GKG++ +++ N G L + V ++ +++++D G +IR Sbjct: 583 GYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTN 640 Query: 867 VNEIRIASRATKGVVIFSTAKDERVVS 893 + I RAT GV + +D ++V+ Sbjct: 641 LANISQTGRATMGVKVMRLDQDAQIVT 667 Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ++T+S +G+ KR +F R G+G++ T V + + LV+ + +D ++ ++K Sbjct: 371 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVS---TSTHDHLLFFTNK 427 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIVDEA 906 G + R+ EI R KG+ + + K DE + +V + ES+ D+A Sbjct: 428 GRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV-ESDRSDDA 476 >gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab] gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab] Length = 849 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 300/751 (39%), Positives = 436/751 (58%), Gaps = 67/751 (8%) Query: 19 VSITD---EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 V +TD EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 23 VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R L+ G GNFGSVD DPPAA RYTECRL Sbjct: 83 RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + +H LL + + VDF PN+DGS EP VL AR P +L+NG GIAVGMATNIP HN Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+ID PD+ + L+ I GPDFPTG I+ GI+ AY TGRGSI +RGV+ Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262 Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 E+ R ++++E PYQVNKAA LEK+AELV + R+ IADLRDESDR G R Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VV+ELKR A+ +L QLY+ T LQS F V ++AL KP++ +L IL+ F+ FRE + Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R + L + + +A + G+ +A+A+L+ V+ ++R +P+ TA+ +L R S Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQ--- 439 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 Q IL + L RLT L R+ + E L I E Sbjct: 440 -----------------------QAETILAMPLRRLTTLERERLYQEQAELQARIAELQG 476 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-----ED--MVVTV 542 +L R +LL +K+EL +K PRRT+I+ ++E E + ED ++ + Sbjct: 477 LLQDRRKLLNYLKKELRHLKKTFADPRRTQILSA-SELEAEAAQIPGGEAGEDSRFLLQL 535 Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + GYV+R+PL G + RS R+ ED + L V+ ++L ++ G + Sbjct: 536 TRKGYVRRLPLP-------GPRSRSNPAQRELGEDTLVSLECVTPEQAILVLTASGRAFT 588 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-------ESSWNNLYVVFATK 653 + +P+ + +RG L+ +L + + FP D E S +V ++ Sbjct: 589 VPIEGIPLSTGSSRGVPLVTLLPNPE----PIVAAFPLDPVRVSGAEHSPGEASLVVLSR 644 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPI 710 G ++R L++ + +++ G +KL DE+ Q ++L T G+ +R Sbjct: 645 QGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDA 704 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 I + GR ++G + L + +Q++ MA++ Sbjct: 705 EQIPLM-GRAAMGSPALRLGRTEQIVGMALL 734 >gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri] gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri] gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri] gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri] gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri] gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 660 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 299/737 (40%), Positives = 437/737 (59%), Gaps = 87/737 (11%) Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207 KDTV+F PNYD + +EP VL R P +L+NG GIAVGMAT IP HNLGE+++ + +ID Sbjct: 2 KDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLID 61 Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267 P+ D LM+ ++GPDFPTG I GR GI +AY TGRG + IR HIE T +E IV Sbjct: 62 TPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKHHIE-TKAKKEIIV 120 Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327 + E+PYQVNKA ++E IA L ++K+I I+++RDESDR+G RVVIELK+ A ++++LN L Sbjct: 121 IDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLNNL 180 Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387 Y+ T +++ F + ++A+ +P+ F L IL F++ R+ V++RRT + L KA+ RAH+L Sbjct: 181 YKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHIL 240 Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447 GL IAV N+DEVVRIIR S N A+ L R Sbjct: 241 EGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR--------------------------F 274 Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 LS +Q++AIL++RL RLTGL RD + E L I I E IL S +L II++EL Sbjct: 275 DLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTE 334 Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 +K++ R+T I + +++ ED I E MVVT++H GYVKRVP+ Y Q+RGGKG+ Sbjct: 335 IKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKV 394 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627 V D+DF+ F+ +TH +++F +++G +Y KV+++P GS A+GKA++N+++L Sbjct: 395 AVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRPD 454 Query: 628 ERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686 E+I I+P P+ DES +VF T++G ++R L++F I +G A+ LD DEI++ Sbjct: 455 EKIMEIIPTPDFDESKS----LVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 510 Query: 687 VETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745 + E I++ T LGQC+RF + R GR++ GVRGI I V+ AD Sbjct: 511 AKIADVETQYIMIFTSLGQCIRFELEKTR-DQGRSTRGVRGIKFK-----IDTDFVVDAD 564 Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805 IS E +Q ILTVSE Sbjct: 565 V--------------------------------------ISSE--------DQEILTVSE 578 Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 KG GKRT+ ++R++NR+G G+ + +S + G ++ V+D ++L++ G +IRV Sbjct: 579 KGIGKRTTVEEYRLTNRAGSGVISMKLS--TKTGNVIGEVLVDDTQDLMLLTSIGKMIRV 636 Query: 866 PVNEIRIASRATKGVVI 882 +N IR A R T GV+I Sbjct: 637 DMNTIRKAGRNTSGVII 653 >gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2] gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2] Length = 820 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 314/871 (36%), Positives = 473/871 (54%), Gaps = 94/871 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IYD + RMAQ W + +L++G GN+GS D DP AA RYTE RL A +L D+ K TV Sbjct: 83 SIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDIEKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D S +EPVVL +RYPN+LVNG GI+ G AT IPTH+L EV+D +AV++ P I Sbjct: 143 LFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDATIAVMEKPQI 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +L+ +M I+GPDFPTG +I+G GIK+AY TG+G I IR + I+ G ++Q+V+TEI Sbjct: 203 ELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQLVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ IA++RDES R G R+V+ELK+ A A+ IL L + T Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEADAEGILAYLLKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P + L IL+A++A + EVV R K+ L KA DRAHVL GL Sbjct: 323 DLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTNRIKFELEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LS 450 A+ LDEV+ I+ S N + A+ L W M+ S Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW------------------------MFGFS 415 Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510 E Q +IL L+L RLT L + EL + +I + IL S +L+ +I++ELL +++ Sbjct: 416 ERQADSILTLQLYRLTNLEITTLEKELADIQKKITQYRSILDSDRKLISLIRKELLEIRE 475 Query: 511 ELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 + RR+ I VE + + E + ED+++T+S GYVKR + + R G RS Sbjct: 476 KYGIDRRSEIQGEVEEI-KVNLEVMVAAEDVLLTLSKDGYVKRTSMLSFT---RSGGERS 531 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627 +++ D++T V+T +L F+ G + V ++P + G ++N++SL + Sbjct: 532 NSGVKEGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKE 591 Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 +RI +++P E +L VF TK G V+R +L+++ S A K+ DEILSV Sbjct: 592 DRIVSVIPIKNMEEIGKSL--VFVTKKGQVKRTELTEYATKRSSAVAACKVAGDDEILSV 649 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 DI+L T+ G +RF + GR S GV+GI LA+GD++++ L + D Sbjct: 650 TLSDNSKDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLAEGDEIVA---ALWVEED 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 E +L ++E G Sbjct: 706 EGE-------------------------------------------------VLVLTESG 716 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLI 863 +GKRT D+ R GKGI + + + + +VA F + Q+ +++ +G + Sbjct: 717 YGKRTLLLDYPSQGRGGKGISTFEFKEGKRVRSNGTRIVAAFYCREAVQLFVITSEGQTM 776 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + + R G ++ K + +V+V Sbjct: 777 SFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807 Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 22/170 (12%) Query: 746 ADYDERIC-YMKHMSAQRRLISGDTEEITSLKND------SSVEGNISEERC--QELKLK 796 AD ++I Y + + R+LIS +E+ ++ S ++G + E + + + Sbjct: 443 ADIQKKITQYRSILDSDRKLISLIRKELLEIREKYGIDRRSEIQGEVEEIKVNLEVMVAA 502 Query: 797 EQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 E +LT+S+ G+ KRTS F S RS G++ D + VN D ++ Sbjct: 503 EDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVKEGDY--------ITQFLDVNTLDVLL 554 Query: 855 LVSDKGTLIRVPVNEI---RIASRATKGVVIFSTAKDERVVSVERIRESE 901 + + +G +PV+++ + T V + S AK++R+VSV I+ E Sbjct: 555 VFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRIVSVIPIKNME 604 >gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1] gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1] Length = 792 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 305/872 (34%), Positives = 479/872 (54%), Gaps = 92/872 (10%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 E++ SYL YA++VI+ RAIPD RDGLKPV RR+L+ M ++ V +K Y KCARI GE MG Sbjct: 9 EIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCARIVGETMG 68 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG+ AIYDAL RMAQD+SLR L++GQGNFGS+DGD PAA RYTE RL + A ++ Sbjct: 69 KYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQFAEDMM 128 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 +D+ ++TV+FR N+DG+ EP L ++ PN+LVNG GIAVGMATN+ HNL E+ D Sbjct: 129 EDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLSEISDAIK 188 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 + N +D L++I++GPDFP G ++ + AY TG+G ++++G E + + Sbjct: 189 YELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKDLIEAYRTGKGKVIVQG----EVDTSEE 244 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 +I++ +PY VNK+ ++E IA L + I DI D++DESDR G R+VI ++ ++ Sbjct: 245 RRIIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVRDEDLKPLV 304 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 +NQLY +T L++ + + L G +P+ L +L F+ R +V+++R++Y L K +R Sbjct: 305 MNQLYEHTDLETTIGIINLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRYRLEKKNER 364 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 VL G+ A+ N+D VV I+R S + + A E +++++N Sbjct: 365 HDVLSGVLTAIDNIDRVVEIVRGSDDVQKA-SETLKKTFN-------------------- 403 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 L++ Q +AILE+RL RL + R+ + NEL S+ EI + +I+ S + + +++ Sbjct: 404 -----LNDRQVKAILEMRLQRLVHMERESVVNELKSIEKEIADLKEIIESEQKRIEVLEG 458 Query: 504 ELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 E+ +K RRT+I + + + ED I E+ V+ +S+ G VKRVP+ YR+QRRG Sbjct: 459 EIDEIKKRYGDKRRTKIKFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRG 518 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 GKG M+ D V + +H ++ FF+S G V+K K + +P S + G + L Sbjct: 519 GKG-VNTSMKISDTVKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLGVSAGAFL 577 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 L Q ER+T +M P D ++V T++G V++ SG + LD D Sbjct: 578 KLQQNERVTEVMKAPADRGE----HLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDD 633 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 E++S T + ++ + + G+ F S +R GR+S+GVR + L + D V++ +V Sbjct: 634 ELVSASTIDTDTNMFVLSSKGKGSVFNTSEVRE-TGRSSMGVRSMRLGEEDYVVTAFVVK 692 Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802 + I + +R N+SE Sbjct: 693 EG-----QDILSISEKGFGKRT-------------------NLSE-------------FP 715 Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862 V +G G +R + R+GK + PV ++D++I+VS Sbjct: 716 VHHRGSG---GVLVYRDTERTGK---------------ISQAIPVKEDDEVIIVSMNEKT 757 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 IR+ +EI SR T GV + +R+++V Sbjct: 758 IRIKASEIPETSRVTSGVKLIDLEDGDRIMAV 789 >gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 819 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 300/759 (39%), Positives = 439/759 (57%), Gaps = 61/759 (8%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCAR+ G+ Sbjct: 6 LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 65 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+ A+YDAL RM QD+S R L+ G GNFGSVD DPPAA RYTECRL + +H Sbjct: 66 VLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELSH 125 Query: 141 -FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 LL+ + ++ VDF PN+DGS EP VL AR P +L+NG GIAVGMATNIP HNLGEVV Sbjct: 126 TALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEVV 185 Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-- 257 DG +A+ID+PD+ + L+ I GPDFPTG IL GI+ AY TGRGSI +RGV+ E Sbjct: 186 DGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVARFEEI 245 Query: 258 ---KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 K R +V++E PYQVNKAA +EK+AEL + RI IADLRDESDR G RVV+EL Sbjct: 246 QPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVVEL 305 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A+ +L QLY+ T LQS F ++AL +P + +L IL+ F+ FRE + R + Sbjct: 306 KREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATLNRMFR 365 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 L + + +A + G+ +A+A+L+ V+ ++R +P+ TA+ +L R Sbjct: 366 AELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTR-------------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + + Q IL + L RLTGL R+ + E L I+E +LS R Sbjct: 412 ------------LGCTPQQAETILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDR 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL-------GY 547 +LL +K+EL +K PRRT+I+ ++E E + +H GY Sbjct: 460 RKLLNYLKKELRHLKKTFGDPRRTQILSA-SELEAEVAQIPSGEETEETHFLLQFTRKGY 518 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 V+R+PL R+ RS R+ ED + L V+ +L ++ G + + Sbjct: 519 VRRLPLPSRRS-------RSNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAG 571 Query: 606 LPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P+ + +RG L+ +L + T T+ P P S +V ++ G ++R L++ Sbjct: 572 IPLSTGSSRGVPLVTLLPNPEPIVATFTLDPDPGKAS------LVVLSRQGRIKRLALAE 625 Query: 665 FIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + + + G +KL DE+ + Q ++L T G+ +R + I + GR + Sbjct: 626 LMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLM-GRAA 684 Query: 722 VGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMS 759 +G + L + ++++ MA+V R+ Y+K +S Sbjct: 685 MGSPALRLGRTERIVGMALVPSQGILVLASRLGYLKRLS 723 >gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771] Length = 367 Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/367 (68%), Positives = 303/367 (82%), Gaps = 1/367 (0%) Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392 +Q+ F NMVALNG KPE+ TL+ +L+AFV FREEVV RRTK+LL KAR+RAHVLVGLAI Sbjct: 1 MQTSFGCNMVALNGGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLAI 60 Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452 AVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD + I D T LSE Sbjct: 61 AVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEE 120 Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+ I+K EL +V+DE Sbjct: 121 QARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEF 180 Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572 TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ R Sbjct: 181 GTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTR 240 Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632 DEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L GERITT Sbjct: 241 DEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITT 300 Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCT 691 I+P PEDE+SW+NL V+F+T G VRRNKLSDF+ +NR+GKIAMKL+ DEILSVETCT Sbjct: 301 ILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGDEILSVETCT 360 Query: 692 QENDILL 698 + +D+LL Sbjct: 361 EHDDVLL 367 >gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Magnetospirillum magnetotacticum MS-1] Length = 496 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 256/390 (65%), Positives = 301/390 (77%), Gaps = 1/390 (0%) Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347 ++EKR+ I+DLRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F NMVALNG Sbjct: 1 MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALNGG 60 Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407 +PE L +L+AF FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR S Sbjct: 61 RPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTS 120 Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467 P+P TAR LM R W A DI LI L+DD + + DGT LSE Q RAIL+LRL RLT Sbjct: 121 PDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTA 180 Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527 L RD+I +EL L EI + LDIL SR+R+ I+K EL V++ TPR+T I++ + Sbjct: 181 LXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFSV 240 Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587 EDED I REDMVVTVSH GYVKRVPLS YRAQ+RGGKGR+G+ RDEDFVT LF+ STHT Sbjct: 241 EDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRLFVASTHT 300 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNL 646 VLFFS G YKEKVWRLPI +P ARGKAL+NIL L N+GERI+TIMP PEDE+SW L Sbjct: 301 PVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDEASWETL 360 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 V+FAT GNVRRNKLSDF +NR+GKIAM Sbjct: 361 DVMFATASGNVRRNKLSDFTTVNRNGKIAM 390 >gi|308069401|ref|YP_003871006.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681] gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681] Length = 820 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 314/871 (36%), Positives = 474/871 (54%), Gaps = 94/871 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IYD + RMAQ W + +L++G GN+GS D DP AA RYTE RL A +L D+ K TV Sbjct: 83 SIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMEMLRDIEKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D S +EPVVL +RYPN+LVNG GI+ G AT IPTH+L EV+D +AV++ P+I Sbjct: 143 LFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPTHSLREVIDASIAVMEKPEI 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +L+ +M I+GPDFPTG +I+G GIK+AY TG+G I IR + I+ G ++Q+V+TEI Sbjct: 203 ELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRSKTEIQSLRGGKQQLVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQ+ K+ ++ + + EK++ IA++RDES R G R+V+ELK+ A A+ IL L + T Sbjct: 263 PYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKEADAEGILAYLLKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P + L IL+A++A + EVV R +Y L KA DRAHVL GL Sbjct: 323 DLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTHRIQYELEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-LS 450 A+ LDEV+ I+ S N + A+ L W M+ S Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW------------------------MFGFS 415 Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510 E Q +IL L+L RLT L + EL + +I + IL S +L+ +I++ELL +++ Sbjct: 416 ERQADSILTLQLYRLTNLEITTLEKELGDIQKKIAQYRSILESDRKLISLIRKELLEIRE 475 Query: 511 ELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567 + RR+ I VE + + E + ED+++T+S GYVKR + + R G RS Sbjct: 476 KYGIDRRSDIQGEVEE-IKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSF---TRSGGERS 531 Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627 +++ D+VT L V+T +L F+ G + V ++P + G ++N++ L++ Sbjct: 532 SSGVKEGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKE 591 Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 +RI +++P E +L VF TK G V+R +L ++ S A K+ DE+LSV Sbjct: 592 DRIVSVIPLKNIEEIGKSL--VFVTKKGQVKRTELKEYATKRSSAVAACKVAGDDEVLSV 649 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 DI+L T+ G +RF + GR S GV+GI LA+GD++I+ L + D Sbjct: 650 TLSEGTRDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLAEGDEIIA---ALWVEED 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 E +L ++E G Sbjct: 706 EGE-------------------------------------------------VLVLTESG 716 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGA----LVAVFPVNDNDQIILVSDKGTLI 863 +GKRT D+ R GKGI + + + + +VA F + Q+ ++ +G + Sbjct: 717 YGKRTLLLDYPTQGRGGKGITTFEFKEGKRVRSNGTRIVAAFYCREAVQLFAITAEGQTM 776 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + + R G ++ K + +V+V Sbjct: 777 SFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807 >gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6] gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6] Length = 776 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 321/863 (37%), Positives = 487/863 (56%), Gaps = 108/863 (12%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I+ E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+ K Y KCARI G+ Sbjct: 7 ISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVGD 66 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+GKYHPHG+AA+YDAL RMAQD+++R LI+GQGNFGS+DGD PAA RYTE RL K A Sbjct: 67 VLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIAE 126 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L D+ KDTVDF PN+D + +EP VL A+ PN+L+NG GIAVGMATN+P HNL EV D Sbjct: 127 EMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVCD 186 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 +A + NPDI + LM+ ++ PDFPTG VI+GR G+ +AY TG+G I +RG IE + Sbjct: 187 AIIAYLQNPDITVRELMKYVKAPDFPTGGVIVGRKGLIDAYETGKGKITVRGRVEIENNT 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 I++ EIPY VNKA ++EKIAEL+ ++ + +RDESDR+G R+V+E++ Sbjct: 247 -----IIIREIPYMVNKARLVEKIAELINSGKL-EAKTVRDESDREGIRIVVEVRE--DI 298 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 + L +LY YT+LQ+ F + +AL +P +L +++ +V R VV RRT+Y L KA Sbjct: 299 NTALKKLYAYTNLQTTFGIINLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKKA 358 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 ++R H++ GL A+ ++D V+++I+ S +P A+ LM+R Sbjct: 359 KERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMER-------------------- 398 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 LSEVQ AIL+ RL +LT + D + E L +IKE +IL+S R+ I Sbjct: 399 ------YELSEVQADAILQTRLQKLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDAI 452 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I EL +K++ RRT IVE ++ E+ + E+ ++ V+ G+VKR+ + ++ Q Sbjct: 453 IASELEEIKEKYGDERRTEIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIG-FKTQH 511 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 RGG G G+ MR +D + ++ +L F++ Y + +P +G + Sbjct: 512 RGGVGVIGIGMRGDDEPAIIVKCNSRDKLLVFTA-SKAYWLNAYEIPKQERTGKGVNIRM 570 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 LS+ +GERI I+PF E ++ T+ G ++R LS+F R+G +A S Sbjct: 571 YLSIPEGERIVAIVPFQNFEGD-----ILILTEDGYIKRTPLSEFENAKRAGIVA----S 621 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 +I + ++ + T G VRF + + GR++ GV+ ISL +GD + ++ Sbjct: 622 GGKI-AFARHLDGKEVFIATTNGYAVRFKAEDVPEY-GRSAKGVKAISLRQGDSIAWLS- 678 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 C I GD + I Sbjct: 679 ------------C-----------IRGDGD-----------------------------I 686 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFPVNDNDQIILVSDK 859 LT++ G GKRT+ ++R+ +R G+ IN G +V V ++ ++ +S Sbjct: 687 LTLTADGHGKRTAVEEYRLVSRGAMGV-------INARSGGVVFSEYVEGDEDLLTISKD 739 Query: 860 GTLIRVPVNEIRIASRATKGVVI 882 G +++ V I R +GV++ Sbjct: 740 GYALKIEVKSIPRQGRNARGVIV 762 >gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106] gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106] Length = 855 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 321/920 (34%), Positives = 477/920 (51%), Gaps = 126/920 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 12 VIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL +G+ TVDF N+D S QEP VL A+ P +L+NG GIAVGMATN+P HN Sbjct: 132 ASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATNVPPHN 191 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+IDN D+ + L II PDFPTG I+ GI AY GRGSIV+RGV+ Sbjct: 192 LGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIVSTDGIAEAYTQGRGSIVMRGVA 251 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IE+ + + IVVTE+P+QVNKA+ +EK A LV R+ I+D+RDESDR G R Sbjct: 252 KIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDESDRDGIR 311 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR AS V+L+ LY+ T L S F +AL +P + TL IL+ F+ FRE+ + Sbjct: 312 VVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDSQPRQLTLKQILQEFLNFREQTL 371 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +R+ + L A R H++ GL A+ANLD V+ I+R +P+ TA+ Sbjct: 372 IRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAK--------------- 416 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 I + + +SE Q AIL + + RLTGL R ++ E L +I++ Sbjct: 417 -----------ISLESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRR 465 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-------------- 535 ++ RS L+ +K+EL S+K + PRRTRI+ + E R Sbjct: 466 LIDDRSELMKSLKKELRSLKRQYGDPRRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTT 525 Query: 536 ----------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVS 584 E+ + +H GYV+R+ ++ R +S +++ D +DF ++ + Sbjct: 526 AILQPVAPAEEETFLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTN 585 Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644 T ++ + G Y V +P S ++RG LI +L +T P E Sbjct: 586 TGQNLAIITRTGKAYPLNVGDIPTTSNRSRGTPLITLLP----SSVTKDPPMSLQELILA 641 Query: 645 NLYV---------VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695 + V + T+ G ++R L++ + + G +KL +DE+ Sbjct: 642 HFIVAQHSDKTDLILVTQQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQ 701 Query: 696 ILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754 ++L T G+ +R P++ ++ GR A+G QV Sbjct: 702 MILATSGGRVLRLPVNDEQLPPMGRT---------AQGSQVT------------------ 734 Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814 + Q RL+S C + K +L VSE GF KR S Sbjct: 735 --RLRKQERLVS-----------------------CLTVPPKASLLL-VSELGFAKRISL 768 Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874 R + R G + + AL + VN + + L++ + ++R V+E+++ + Sbjct: 769 DRVRSTTRGAIGTQLFQFK--GQKDALAGMVSVNSHQEAYLITSESRIVRFAVDEVKLQN 826 Query: 875 RATKGVVIFSTAKDERVVSV 894 G +F E ++ V Sbjct: 827 EEATGNRLFKLNTGETIIGV 846 >gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI] gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI] Length = 799 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/732 (37%), Positives = 451/732 (61%), Gaps = 46/732 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E++ I +++I DEM++SY Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G ++K Sbjct: 2 KEKEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKN 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR LLI+GQGNFGS+D DPPAA RY Sbjct: 62 YRKSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +L+K + +L DL K+TVD + N+D S +EP+VL PN+L+NG GIAVGMATN+ Sbjct: 122 TEIKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNM 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HN+ E ++ + ID I ++ LM+ I+ PDFPTG +I G G+K + TGRG I++ Sbjct: 182 PPHNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIYGYEGVKKYFLTGRGKILL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R H E+ + +R ++V EIPYQ+NK ++ K +LV+E ++ ++++RDESDR G R+ Sbjct: 242 RSKVHFEEIN-NRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRI 300 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V +K+ +LN L++ TSL++ F VN +AL KP L ++K FV R +V++ Sbjct: 301 VYNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGKPTILNLKDLIKHFVNHRHDVII 360 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTKY LN+A++RAH++ G I + NL+ V+ +I+ S + A+++++ + +N Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIK-YN------- 412 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE+Q ++ILEL+L LT L I+ E + +I I Sbjct: 413 ------------------LSEIQVKSILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKI 454 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 +S++ IIK+EL VK + RRT I L +E+E + V+T+++ GY+K+ Sbjct: 455 ISNKFLQKKIIKKELNIVKTKYGDLRRTEI--NYLGLENE--VYNNKFVITITNTGYIKK 510 Query: 551 VPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 L+ Y+ GV + ++ + + I + +LFF G + KV+++P Sbjct: 511 NYLNKYKI---------GVTYKCKKNNLEKIIIAKNYQDILFFYENGKYFLLKVFKIPEV 561 Query: 610 SPQARGKALINILSLNQGERITT--IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 +++G+A+ N++ +N+ E+I + ++ D+ N YV+ TK+G +++ L IQ Sbjct: 562 LKKSKGQAIQNLIKINKKEKICSSILIEKNNDKKYLNKNYVILITKNGIIKKTTL---IQ 618 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++ K +K+ ++D I+ + + ++I + K G+ ++F S I+ A +N + + I Sbjct: 619 YYKNPKNLIKIINKDYIIYAKLTNENSEIFIAEKSGKIIKFDESTIKKIALKNDLYIICI 678 Query: 728 SLAKGDQVISMA 739 + K + ++ ++ Sbjct: 679 NDLKKEYILVVS 690 >gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299] gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299] Length = 963 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 291/740 (39%), Positives = 433/740 (58%), Gaps = 55/740 (7%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E++ I + + E SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ K + Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+ L++G GNFGS+D DPPAA RYT Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224 Query: 132 ECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 ECRL+ AA LL D+G D VDF +DGS EP VL AR PN+L+NG GIAVGMAT+I Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284 Query: 191 PTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248 P HNL EV + V +P+ L+ L+E++ PDFPTG +I+ R G K Y TG+G + Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344 Query: 249 VIRGVSHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302 +RG + +EK SG R+ +V+T IPYQ NKA++ E+IA+LV + I ++D+RDE Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404 Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362 SDR G RVV+E++RGA A+ +L+QLY T LQ+ SVN+V L G +P+ +L+ I++ F+ Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFL 464 Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422 AFR + V RR ++ L KA R HV+ G A D VV IR + + TA+ L ++ + Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPF 524 Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482 +LSE Q A+L + L RLTGL D ++ E L Sbjct: 525 -------------------------WLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTA 559 Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542 +++ +L RSR++ + +E ++D RRT D++ + I + M VT+ Sbjct: 560 RVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRT-------DIDTDAQIHAKKMNVTL 612 Query: 543 SHL-----------GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591 L GY+KR+ +V+ Q R +GR+ MR D VT + + +VLF Sbjct: 613 DMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLF 672 Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVV 649 F+ G V+ + + +P S A G +L L +GE IT ++P E+ + Sbjct: 673 FTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLC 732 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 F T G ++R S+F+ I +GK A+ L D + V+ + + I++ G + F Sbjct: 733 FVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFD 792 Query: 710 ISAIRVFAGRNSVGVRGISL 729 ++R GR + GV+ ++ Sbjct: 793 ADSVRA-QGRAAAGVKAMAF 811 >gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 525 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 264/514 (51%), Positives = 350/514 (68%), Gaps = 9/514 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA +VI+GRA+PD+RDGLKPVHRR+L+ +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + R AQ +SLR L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L DL K+TVDF NYDG+ + P V + PN+LVNG GIAVG ATNIP HNL Sbjct: 128 AKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A ID+ DI ++ L E I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +N VAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQPKIXNLKDIIAAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LA+A+AN+D ++ +IR +P P A+ L+ W ++ ++ Sbjct: 368 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 D + G DG YL+E Q +AIL+LRL +LTGL + + +E L +I E Sbjct: 428 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 487 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520 L IL S RL +I++EL V+++ RRT I Sbjct: 488 LLRILGSADRLXEVIREELELVREQFGDKRRTEI 521 >gi|158338824|ref|YP_001520001.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] Length = 824 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 321/885 (36%), Positives = 481/885 (54%), Gaps = 101/885 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + ++ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 VIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 LL+++G+ TV+F N+D S QEP VL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 SPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VD VA+ID+PD+ L+ LM ++ GPDFPTG I+G+ GI +AY GRGSI +R V+ Sbjct: 193 LGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIVGKQGIIDAYTNGRGSITVRAVT 252 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IE+ R + I+VTE+PYQVNKA +EKIA L+ + RI IADLRDESDR+G R Sbjct: 253 SIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRDESDREGMR 312 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR A +L QLYR T LQS F V M+AL P + +L +L+ F+ FRE+ + Sbjct: 313 IVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALVNGVPLQLSLKEVLQKFLDFREQTL 372 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR + L +A+ R H++ GL A+ +LD+++ I+R +P+ TA+ +L + Sbjct: 373 TRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKSQ--------- 423 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q AIL + + RLTGL + ++R E + L EI + Sbjct: 424 -----------------FQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLER 466 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-EDMVVTVSHLGYV 548 +L +R LL +K++L ++K + PRRT I E V E ++V ++ GY Sbjct: 467 LLGNRHELLKALKKDLRALKKQYSDPRRTVIHGAAAKTEIFAAPVSDESVIVELNQRGYA 526 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV----STHTSVLFFSSLGFVYKEKVW 604 + + +S ++ SG + D TDL I T +L F+ G Y + Sbjct: 527 RCMRVS---KRKNNAPDLSGELA---DVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQ 580 Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 +P S + +GK L+ +L + G I F E S + ++ ++ G ++R +S+ Sbjct: 581 SIPFTSSKGKGKPLVTLLP-DSGRDDEIIARFLSTEIS-DTSQLILLSQQGKIKRLPMSE 638 Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 F ++ G A K+ S D++ V QE ++ + T G+ + PI+ I GR + G Sbjct: 639 FAEMTSRGLGAAKIKSGDQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEM-GRTAQGN 697 Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784 + L K + ++ +A V DAD Sbjct: 698 QVFRLRKQESIVGLAAV-RDDAD------------------------------------- 719 Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844 +L +S KG+ KR R+ G +A ++ L+A+ Sbjct: 720 ---------------LLLISSKGYCKRLPIDLLRLGKVGDLGTQAMQFMIKSD--GLIAL 762 Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 P N N +I++S++ R+ + + + + G + T + E Sbjct: 763 LPANPNQDVIVLSNQERAARLNIETLPMWGQDGPGTQLLKTKRGE 807 >gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis M0579] Length = 533 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 257/517 (49%), Positives = 358/517 (69%), Gaps = 12/517 (2%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ I D + VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M Sbjct: 1 MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 ++ WN Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV Sbjct: 61 HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DG AA RYTE R+ K +H +L D+ ++TV+F PNYDGS EP+VL R+P +LVNG Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++ Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240 Query: 241 YATGRGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 Y TGRG +V+RG +HIE +G+RE IV+ EIPYQVNKA ++EKI +LVREK + I++ Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 LRDESD+ G RVVIELKR +A+V+LNQLY+ T LQ F +NMV L +P L IL Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360 Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418 F+ R EVV RRT + L KAR H+ G A+A++N+DE++++I+ SPN A+ +L+ Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420 Query: 419 QRSWNASDIKDL-----IDL----IDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468 R W +S ++++ +DL + + IG + YLSE+Q AIL + L LTGL Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480 Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 +++I +L +I + +DILS R+ II+ EL Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDEL 517 >gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39] Length = 875 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 330/905 (36%), Positives = 480/905 (53%), Gaps = 140/905 (15%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 12 VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL +G+ TVDF N+D S QEP VL A+ P +++NG GIAVGMATNIP HN Sbjct: 132 ATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+IDNPD+ LM++I GPDFPTG I+ GIK AY +GRGSIV+RGV+ Sbjct: 192 LGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGVA 251 Query: 255 HIEK--TSG---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IE+ TSG + IVVTE+P+QVNKA +EK+A LV ++ I+D+RDESDR+G R Sbjct: 252 KIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIR 311 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+ +V+L+ LY++T L S F +AL +P + +L IL+ F+ FRE+ + Sbjct: 312 VVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQTL 371 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RR + L A R H++ GL A++ LDEV+ I+R +P+ +A+ L R Sbjct: 372 LRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETR--------- 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + S Q AIL + L RLTGL ++ E L +I+ Sbjct: 423 -----------------LDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRR 465 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-----------------DMEDEDC 532 +LS RS LL +K+EL S+K PRRTRIV E Sbjct: 466 LLSERSELLKSLKKELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESK 525 Query: 533 IVR------EDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 I+R E+ +V ++ GYV+RV P ++ R Q R + +DF ++ +T Sbjct: 526 ILRPQLPAVEETLVEMTLRGYVRRVTPHNLSRPQSR----EDITIEAIDDFPVTSYLTTT 581 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-------------------LNQ 626 +++ + +G Y V +P S ++RG LI +LS L Sbjct: 582 AETLVIINRMGKAYPLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGA 641 Query: 627 GERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682 G + + + P + + + + ++ + G ++R +DF+ ++ G MKL D Sbjct: 642 GLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDND 701 Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIV 741 E+ + ++L T G+ +R I+A ++ GR + G L K +Q++ I Sbjct: 702 ELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVG-CIT 760 Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801 L + + L +FIL Sbjct: 761 LSSTGE-----------------------------------------------LNNKFIL 773 Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG-ALVAVFP-------VNDNDQI 853 VSE+G+ KR S + S R G G + N+ LVA P ++N + Sbjct: 774 LVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVATTPGEAIYCLTSENRMV 833 Query: 854 ILVSD 858 LV D Sbjct: 834 TLVPD 838 >gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703] Length = 481 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 258/482 (53%), Positives = 339/482 (70%), Gaps = 18/482 (3%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH LL DL KDTVDF PNYDG+ Q P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEI 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L IL AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR + P A+ L+ W ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLERA 427 Query: 435 D---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++ + I DG YL+E Q +AIL+LRL +LTGL E + + IK Sbjct: 428 GGDAARPEWLEAEFGI-RDGKYYLTEQQAQAILDLRLQKLTGL-------EHENCWMSIK 479 Query: 486 EC 487 C Sbjct: 480 SC 481 >gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli Length = 493 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 257/492 (52%), Positives = 342/492 (69%), Gaps = 9/492 (1%) Query: 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97 +GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + Sbjct: 1 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60 Query: 98 ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157 RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL K AH L+ DL K+TVDF NY Sbjct: 61 VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120 Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217 DG+ + P V+ + PN+LVNG GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LM Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180 Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVN 276 E I GPDFPT A+I GR GI+ AY TGRG + IR + +E RE I+V EIPYQVN Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240 Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336 KA ++EKIAELV+EKR+ I+ LRDESD+ G R+VIE+KR A +V+LN LY T LQ Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 300 Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396 F +NMVAL+ +P+ L I+ AFV R EVV RRT + L KARDRAH+L LA+A+AN Sbjct: 301 FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 360 Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY-------TIG-SDGTMY 448 +D ++ +IR +P P A+ L+ W ++ +++ D + G DG Y Sbjct: 361 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 420 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 L+E Q +AIL+LRL +LTGL + + +E L +I E L IL S RL+ +I++EL V Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 480 Query: 509 KDELDTPRRTRI 520 +++ RRT I Sbjct: 481 REQFGDKRRTEI 492 >gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] Length = 981 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 319/875 (36%), Positives = 465/875 (53%), Gaps = 107/875 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + V I EMQ SYL YA++VI+ RA+PD RDGLKPV RRIL+ M MG+ + Y K A Sbjct: 6 VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI GEV+GKYHPHG+ A+Y+A+AR+AQD+++R L++GQGNFGS+DGDPPAA RYTE RL Sbjct: 66 RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL + ++TVDF N+DG+ +EP VL A PN+LVNG GIAVGMATNIP HNL Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185 Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRT---GIKNAYATGRGSI 248 EVVD ++D +I + LM I+GPDFPTG ++L G+ AY +G+G I Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +IRG H E R ++++TE+PYQ NK +++E+IAELVRE + I+DLRDESDRQG Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+VIELK+GA + + LY T LQS F + ++AL +P TL L+ F+ R V Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVDGEPRLLTLKQALRVFLEHRIVV 365 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V RR++Y L +AR RAH+L GL +A+ NLDEV+++IR +P+ E AR LM+R Sbjct: 366 VRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKR-------- 417 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE+Q +AIL+++L RL L R I E + +IK Sbjct: 418 ------------------FKLSEIQAQAILDMQLRRLASLERKKIEEEYREVTAQIKALE 459 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 +L+S ++ +K+ELL +K++ RRT+IV +E E I +T + Sbjct: 460 SLLASAKKIRLAVKEELLKMKEQYGDRRRTQIV----TLEGETAI---HQFLTADEMAPA 512 Query: 549 KRVPLSVY---RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 +V + V R R G+G ST ++ ++ G V Sbjct: 513 DKVWVGVMADGRVGRTAGEGLPATP------ALHCLRASTRAVLILANAQGQASALSVGA 566 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP+ G L +L++G+R+ + D+ + Y++ T++ V+++ L + Sbjct: 567 LPVVERWQDGMPLHKASALSEGDRVVLALALEPDDPKTDR-YLLTVTRNALVKKSSLEEL 625 Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 + +K++ DE+L+ ++++LL T G +RF S +R G + GV Sbjct: 626 PGPSAQKFTLVKVNPEDELLTGVVTEGQDEVLLLTAGGMAIRFSESEVRPM-GLVAAGVL 684 Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785 G+ +L GD V G + Sbjct: 685 GM-----------------------------------KLTEGD-----------QVSGLV 698 Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 L +E+ IL G R + DF + R G+G+ AT VS+ E+ V Sbjct: 699 -------LNPQEKDILFACSDGTTGRIAGADFPLQGRYGQGVLATRVSRGAEV---VGAL 748 Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880 V +++L ++ VPV+EI R KG Sbjct: 749 GVQHQKEVLLHLSSQDVLVVPVSEIHRIKRGNKGT 783 >gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 810 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 314/823 (38%), Positives = 466/823 (56%), Gaps = 56/823 (6%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 21 YSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 80 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + LI+G GN+GS D DP AA RYTE RL A LL D+ K TV Sbjct: 81 SIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEARLSAIAMELLRDIEKRTV 140 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL AR+PN+LVNG GI+ G AT IP HNL EV+D C+A+++ P++ Sbjct: 141 PFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPHNLREVIDACIALMEKPEM 200 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 L+ + ++GPDFPTG +I+G GI+ AY TG+G I +R + IE G ++QIV+TEI Sbjct: 201 TLEEIRLFVKGPDFPTGGIIMGEEGIREAYETGKGRIYLRSKTEIETLRGGKQQIVITEI 260 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ IA++RDES R G R+V+ELK+ A A IL L + T Sbjct: 261 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVELKKDADAQGILAYLLKKT 320 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P + L +L+A++A + EVV RT+Y L K DRAHVL GL Sbjct: 321 DLQVTYNFNMVAIVNKAPRQLGLKAMLEAYIAHQREVVTYRTQYELEKLEDRAHVLEGLV 380 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDEV+ I+ S N + A+ L W +E Sbjct: 381 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 414 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AIL L+L RLT L ++ EL + +I IL S +L+ +IK+EL+ ++D+ Sbjct: 415 RQADAILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDK 474 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I + + L + E + +ED++VT+S GY+KR S+ R GG+ R G Sbjct: 475 YGIDRRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRT--SMLSFTRSGGE-RDGS 531 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 +++ D++ L V T ++L F+ G + V ++P + G A++N++ L + +R Sbjct: 532 GVKEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDR 591 Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSV 687 I +++P DE+ L +VF TK+G V+R +L ++ + RSG +A K+ DE+LSV Sbjct: 592 IVSVIPVKSFDENP--ELSLVFVTKNGQVKRTELKEY-EKKRSGAVAACKVGDGDEVLSV 648 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--------A 739 +ILL TK G +RF + GR S GVRGI+L D+V+S Sbjct: 649 TVSRNNQEILLLTKQGMAIRFAEDEVNPM-GRVSAGVRGINLKDDDEVVSALWVEGEEGE 707 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK----NDSSVEGNISEERCQELKL 795 +++ +D Y +R + + R T E K N S + G + C+E L Sbjct: 708 VLVVSDLAYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVGGV---HCKEPVL 764 Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + V+++G SS D I++R G V K +EI Sbjct: 765 ----LQAVTKEGQMHTFSSEDAPIADRKSIGKAMMSVDKNDEI 803 Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust. Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 9/248 (3%) Query: 648 VVFATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 +V ++ G ++R + F + R G + D +L V+T ++L+ T+ GQ Sbjct: 504 LVTISREGYIKRTSMLSFTRSGGERDGSGVKEGDYIKYLLEVDTL---QNLLIFTQRGQY 560 Query: 706 VRFPISAIRVFAGRN--SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 P+ I F ++ + V I LAK D+++S+ V D + + + ++ +R Sbjct: 561 FLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPELSLVFVTKNGQVKR 620 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823 + E+ S + G+ E + Q IL ++++G R + + R Sbjct: 621 TELKEYEKKRSGAVAACKVGDGDEVLSVTVSRNNQEILLLTKQGMAIRFAEDEVNPMGRV 680 Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 G+R ++ +E+ + A++ + ++++VSD R + + + SR KGV F Sbjct: 681 SAGVRGINLKDDDEV--VSALWVEGEEGEVLVVSDLAYAKRSLLLDYPVQSRGGKGVQTF 738 Query: 884 STAKDERV 891 + +RV Sbjct: 739 EFKEGKRV 746 >gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] Length = 814 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 313/867 (36%), Positives = 472/867 (54%), Gaps = 96/867 (11%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +L++G GN+GS D DPPAA RYTE RL A LL D+ K TV Sbjct: 83 SIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAMELLRDIDKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +RYPN+LVNG GI+ G AT IP HNL E++D C A++ NP + Sbjct: 143 PFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIIDACFALMANPSM 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 + LM I+RGPDFPTG I+G GI+ AYA+G+G I IR + IE G ++QIV+TEI Sbjct: 203 TVAELMTIVRGPDFPTGGTIMGEEGIREAYASGKGRIYIRSKAEIEDVRGGKQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EKR+ IA++RDES R G R+V+ELK+ A A IL L++ T Sbjct: 263 PYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELKKDADAQGILAYLFKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ F+ NMVA+ P + L +L A++ ++EVV RT++ L KA DRAHVL GL Sbjct: 323 DLQVTFNFNMVAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRTRFDLEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDE++ I+ S N + A+ L+ + +E Sbjct: 383 KALNLLDEIIATIKASKNRQDAQNNLVSK--------------------------FGFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AIL L+L RLT L + EL I IL+S +LL +I++E+L ++ + Sbjct: 417 RQADAILTLQLYRLTNLEITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTK 476 Query: 512 LDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 RR+ I VE L + E + ED+++TVS GY+KR + Y R GG+ S Sbjct: 477 FGIDRRSDIRGEVEE-LKVNLEVMVQSEDVLLTVSREGYIKRTTMLSY--TRSGGELESA 533 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 V +D D V L V+T S+L F+ G + V ++P + G AL+N++ L++ + Sbjct: 534 GV-KDGDVVRHLLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKED 592 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSV 687 + I+P + + + +L +F TK G V+R +L ++ + NRS IA K+ DE+++V Sbjct: 593 SVIGIVPIRDFDQASASL--LFITKRGQVKRTELKEY-KSNRSTAIAACKVGDGDEVIAV 649 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++LL ++ G +RFP + + GR + GVRG+ L D+++ A+V + + + Sbjct: 650 LESNSNQELLLVSRQGMAIRFPETEVNPM-GRVAAGVRGMQLKDDDEIVGCALVANDEGE 708 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 +L +S+ G Sbjct: 709 ----------------------------------------------------VLVLSDLG 716 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVS-----KINEIGALVAVFPVNDNDQIILVSDKGTL 862 +GKR+ ++ I R GKGI + K N G AV+ + +IL++ G Sbjct: 717 YGKRSLLAEYPIQGRGGKGIATFEFKEGKRVKPNGNGLTGAVY-CKEEKSLILIAASGAT 775 Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDE 889 +P ++ I R + G + + K++ Sbjct: 776 WTLPTDKTPIDERRSIGKPLVTLDKND 802 Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 18/162 (11%) Query: 750 ERICYMKH-MSAQRRLISGDTEEITSLKND------SSVEGNISEERC--QELKLKEQFI 800 +RI Y++ ++++++L+S EE+ ++ S + G + E + + + E + Sbjct: 447 KRIAYLQSILASEKKLLSVIREEMLEIRTKFGIDRRSDIRGEVEELKVNLEVMVQSEDVL 506 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860 LTVS +G+ KRT+ + RSG + + V + + L++ VN D ++L + KG Sbjct: 507 LTVSREGYIKRTTMLSY---TRSGGELESAGVKDGDVVRHLLS---VNTIDSLLLFTKKG 560 Query: 861 TLIRVPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRE 899 +PV+ E + T V + +K++ V+ + IR+ Sbjct: 561 QYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIGIVPIRD 602 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 5/102 (4%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L ++++G KRT +++ SNRS A K+ + ++AV N N +++LVS + Sbjct: 610 LLFITKRGQVKRTELKEYK-SNRS----TAIAACKVGDGDEVIAVLESNSNQELLLVSRQ 664 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 G IR P E+ R GV D+ +V + E Sbjct: 665 GMAIRFPETEVNPMGRVAAGVRGMQLKDDDEIVGCALVANDE 706 >gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453] gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453] Length = 819 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 312/870 (35%), Positives = 477/870 (54%), Gaps = 92/870 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +L++G GN+GS D DP AA RYTE RL A LL D+ K TV Sbjct: 83 SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSSIAMELLRDIEKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +RYPN+LVNG GI+ G AT IP HNL EV+D C+AV+ P+I Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +L +M I+GPDFPT +I+G GI +AY TG+G + +R + IE G ++QIV+TEI Sbjct: 203 ELAEIMTFIKGPDFPTSGIIMGGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ IA++RDES R+G R+V+ELK+ A A+ IL L + T Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLLKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P++ L +L A++ + EVV RT++ L KA DRAHVL GL Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLTAYIEHQREVVTNRTQFELEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDEV+ I+ S N + A+ L W +E Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q +IL L+L RLT L ++ EL+ L +I+ IL S +L+ +I++ELL ++++ Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREK 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK-GRSG 568 RR+ I E + + + E + ED++VT+S+ GY+KR S+ R GG+ G SG Sbjct: 477 YGIERRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELGSSG 534 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 V +D D++T LF V+T ++L F+S G + V ++P + G A++N++ + + + Sbjct: 535 V--KDGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKED 592 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 I +++P E +L VF ++ G V+R +L D+ A K+ + D I+ V Sbjct: 593 NIVSVIPVSNFEDPGKSL--VFVSRKGQVKRTELKDYATKRAGAVAAAKVAADDSIIQVV 650 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 DI+L +K G +RF + GR S GVRGI L GD+V++ V Sbjct: 651 MSDGHKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV------- 702 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 +ND E ILT+++ G+ Sbjct: 703 ---------------------------END------------------EGEILTITDLGY 717 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIR 864 GKR+ D++ +R GKG+ + + + A+ F + QI+ S+ G Sbjct: 718 GKRSLLLDYQAQSRGGKGMATFEFKEGKRVKPNGSAIAGAFYCREPLQIMAYSEDGQAYP 777 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + ++ IA R + G ++ K ++V + Sbjct: 778 IHTEQVPIAERKSIGKLLADVGKKGQIVDL 807 >gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis] Length = 470 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 258/495 (52%), Positives = 347/495 (70%), Gaps = 27/495 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E+ + IT ++I EMQ S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M +G+ +K Sbjct: 3 EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 63 AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE ++ K + L+ D+ KDT+DF+ NYDGS QEPVV+ AR+PN+LVNG GIAVGMATN Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP H LGEV+DG +A+ +N +ID+ LME I GPDFPTGA ILGR+GI+ AY TGRGSI Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEILGRSGIRRAYQTGRGSIT 242 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE +G +++I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G R Sbjct: 243 LRAKTEIEDHNG-KQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R A+A+V+LN L++ T+LQS F +N++AL G +P+ L L+ ++ + V Sbjct: 302 IVIEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGRPKVLNLKECLEEYLDHQIVVT 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT + L KA RAH+L GL IA+ +LDEV+ +IR S E AR LM+R Sbjct: 362 RRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMER--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS Q++AIL++RL RLTGL RD I E N L I E + Sbjct: 413 -----------------FELSYDQSQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKE 455 Query: 490 ILSSRSRLLGIIKQE 504 IL + + L II++E Sbjct: 456 ILENEYKGLEIIREE 470 >gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1] gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1] Length = 815 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 284/720 (39%), Positives = 433/720 (60%), Gaps = 40/720 (5%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRKSAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW LR +LIE GN GS+DGDP AA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEARLAPIASELLHDIDKETV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F PN+D + EPVVL AR+PN+LVNG GI+ G AT IP H+LGE++DG + ++NPD Sbjct: 143 KFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPHHLGEIIDGAIMRMENPDC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 ++ LM +I+GPDFPTG ++ G GIK AY TG+G +V+RG + IE+ G R+QIV+ EI Sbjct: 203 TVEDLMTVIKGPDFPTGGIVQGIDGIKKAYETGKGKMVVRGRTSIEEIRGGRKQIVIAEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+VNKA +++KI EL ++++ I+++RDE+DR G R+VIELK+ A AD +LN L++ T Sbjct: 263 PYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVIELKKDADADSVLNYLFKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P+ L +L A++ ++EVV +RT++ L KARDR H++ GL Sbjct: 323 DLQVSYNFNMVAIHNRRPQLMGLRELLDAYIEHQKEVVTKRTEFDLKKARDRKHIVDGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + + A+ L+ + +E Sbjct: 383 KALSILDEVIAAIRASKDKKDAKANLIAK--------------------------FAFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT + NE L +I+ L ILSS +L +IK+EL ++ + Sbjct: 417 PQAEAIVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSSEKKLFTVIKKELRDIRKK 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RRT I + L + E I ED++VT++ GY+KR L Y A GR + Sbjct: 477 YADNRRTTIEAEIQELKINLEAMIPNEDVMVTITKDGYIKRTSLRSYTA----SNGRD-L 531 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 ++D D + ++T +VL F++ G V LP + G+ + N+++L + E Sbjct: 532 AIKDSDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRWKDLGQHVSNLVTLERDEG 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I ++P E +++F TK+G ++ +L + Q R K +A+ L DE+L V Sbjct: 592 IIKVLPI---EDFNQPQFILFFTKNGMAKKTELQQY-QAQRYSKALVAINLKGDDEVLDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 ++ L ++LG +RF + I V G+ + GV+G++L +GD+++S I+ + D Sbjct: 648 HLTDGSKEVFLASRLGYGLRFDEAEISV-VGQRAAGVKGMNLKEGDRLVSGKIIEDPEKD 706 >gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1] gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1] Length = 798 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 305/819 (37%), Positives = 471/819 (57%), Gaps = 56/819 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + D + + + Y+ +I RA+PD+RDGLKPV RRIL+ M G +K + K A Sbjct: 4 VLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G +HPHG++++Y+A+ RM+Q+W +R +LIE GN GS+DGDPPAA RYTE RL Sbjct: 64 KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG GI+ G AT IP H+L Sbjct: 124 SAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ID+P +D LM +++GPDFPTG +I G+ GIK AY TG+G IVIRG + Sbjct: 184 GEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGIIQGKEGIKTAYETGKGKIVIRGKAT 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G ++ IV+TEIPY+VNKA +++KI EL EK++ I D+RDE+DR G R+VIE++ Sbjct: 244 IEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVIEVR 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + +A+ ILN LY+ T LQ +S NMVA++ +P+ L +L A++ ++EVV R++Y Sbjct: 304 KDGNAEGILNYLYKNTDLQITYSFNMVAIHERRPKLLNLPQMLDAYIEHQKEVVANRSRY 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA++RAH++ GL AV+ LDE++ IR S + + A+ LM D Sbjct: 364 ELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLM----------------D 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +T E Q AI+ L+L RLT D+R E N+L +I++ IL S Sbjct: 408 QYGFT----------EPQAEAIVTLQLYRLTNTDIYDLREEANALHDKIEQLTSILESEK 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVKRVPL 553 +LL +IK EL +K RRT I E + +++ E +V ED++VT++ GY+KR L Sbjct: 458 KLLSVIKSELRKMKKTYADERRTTIEEEIKEIKIEMNVVIPEEDVIVTITKDGYIKRTSL 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y A G M++ D + +F ++T ++L F++ G V+ LP + Sbjct: 518 RSYSASNGQDIG-----MKEGDRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRWKD 572 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G+ + +I+ L++ E++T+ +P + + N Y++F TK G V++ L + + R K Sbjct: 573 LGQHISHIIPLDRDEQLTSAIPI----ADFENGYLLFITKQGFVKKTHLVHY-KAQRYSK 627 Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 +AM+L DE+++V I L T+ G + F I G + GV+GI L Sbjct: 628 PLVAMRLKEDDEVVNVYQTNGMGHIFLVTQYGYGLLFSEEEIGE-VGVRAAGVKGIHLKD 686 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V+S DE I + A +++ + E T K + + E + Sbjct: 687 GDDVVS------GQQATDENIILVTKRGAAKKIARAEIELSTRAKRGQLL---VKEVKTN 737 Query: 792 ELKL------KEQFILTVSEKGFGKRTSSYDFRISNRSG 824 +L +++ +EKG + + R+S+R G Sbjct: 738 PHRLVSCHFISHGWVILKTEKGITEEVHVDELRLSDRYG 776 >gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032] gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus SAFR-032] Length = 812 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 289/715 (40%), Positives = 428/715 (59%), Gaps = 42/715 (5%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL DL K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAIASELLKDLDKETV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F N+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+DG + I+ P Sbjct: 143 EFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDGVIKRIEQPHC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 ++ LM +I+GPDFPTG +I G GIK AY TG+G I+IRG + IE G R+QIV+TEI Sbjct: 203 TVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIRGKAEIETIRGGRQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+VNKA +++K+ E E+++ I+++RDE+DR G R+V+ELK+ A A+ +LN LY+ + Sbjct: 263 PYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVVELKKEADANGVLNFLYKNS 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P TL IL A++A ++EVV R+ Y L KA++R H++ GL Sbjct: 323 DLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTNRSAYELRKAKERHHIVDGLI 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ LM++ +E Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLMEK--------------------------YDFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q+ AI+ L+L RLT +R+E N L + I E DIL + +LL +I L +K Sbjct: 417 AQSEAIVSLQLYRLTNTDITQLRDEANELDVRIAELEDILGNEKKLLKVITNSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E I ED+ VTV+ GY+KR Y A G Sbjct: 477 YADDRRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ + NI+S+++ E Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDES 591 Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686 I +P E DE+S Y++F TK G V++ KL + + R K +A+ L DE++ Sbjct: 592 IQKAIPIKEFDETS----YLLFFTKGGMVKKTKLLQY-KAQRYSKPLVALNLKGDDELVD 646 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 V T + ++ + TK G + F + V R + GV+GI+L GD+V+S I+ Sbjct: 647 VHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGINLKDGDEVVSGQII 700 Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ G+ KRTS + SN G++ TD L+ F +N D ++L Sbjct: 503 EDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKDTD--------RLIHQFEMNTTDVLLLF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG+ I PV++ IR I S +DE + I+E Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKAIPIKE 600 >gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33] gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33] Length = 447 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/419 (57%), Positives = 315/419 (75%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +G +WNK Y K Sbjct: 6 KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 R+ K AH LL DL K+TVD+ PNYDG+ Q P VL + PN+L+NG GIAVGMATNIP H Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NLGEV+DGC+A IDN I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 + IE +E I+V+EIPYQVNKA ++EKIAELV+EK++ I+ LRDESD+ G R+VIE Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 KR A +V+LN LY T LQ+ F +NMVAL+ +P+ F L +LK FV R EVV RRT Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + L KAR+RAH+L GLA+A+AN+DE++ +IR + P A+ L+ R W+ ++ +++ Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 >gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909] gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1] gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909] gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1] Length = 801 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 279/736 (37%), Positives = 439/736 (59%), Gaps = 42/736 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + + + + D M + + Y+ +I RA+PD RDGLKPV RRIL+ M + G + K Sbjct: 2 ENSTQRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 + K A+ G V+G YHPHG++++Y+A+ RM+QDW LR L++ GN GS+DGDP AA R Sbjct: 62 AFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE RL + LL D+ K+ VDF PN+D S EP VL A +PN+LVNG GI+ G AT+ Sbjct: 122 YTEARLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATD 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL E++D + +++ LD L+ I+GPDFPTGA+I G IK AYATG+G I+ Sbjct: 182 IPPHNLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAIIQGIQEIKKAYATGKGRII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE G R+QIVVTEIPY+VNKA +++KI +L +K+I I ++RDE+DR G R Sbjct: 242 VRSKAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELK+ ++++LN L++ T LQ +++NMVA++ +P L+ ++ A++ ++EVV Sbjct: 302 IVIELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKRPVLMGLMDLIDAYIQHQKEVV 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R+ Y L +AR+R H++ GL V+ LDEVV +IR S + A++ LM Sbjct: 362 TNRSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMV---------- 411 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 SE Q AI+ L+L RLT ++ E L I E + Sbjct: 412 ----------------AFEFSERQAEAIVMLQLYRLTNTDVTALQQENEELSKTILELTE 455 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGY 547 ILSS ++LL +I+ EL V+ + T RR++I E + + +++ D I +ED++V V+ GY Sbjct: 456 ILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKIDETDMITKEDVIVAVTKDGY 515 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRL 606 VKR + Y A + VM+D D + V T ++L F++ G F+Y V++L Sbjct: 516 VKRTSIRSYNATK-----SEMPVMKDGDELVSKLQVDTLQTLLMFTNRGSFIYLP-VYKL 569 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + G+ + N+++++ E++ + D S L+ F T +G +++ +L DF Sbjct: 570 PEFKWKDIGQHVSNLVTIDSEEKVIAVFAI-SDFKSEECLF--FTTANGMIKKTRLGDF- 625 Query: 667 QINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724 +++R + +AM + D ++SV ND+++ TK G ++F I + G ++GV Sbjct: 626 EVSRYNRAMMAMAVKEDDVLISVVKAPSPNDVIMVTKQGYLLKFSDEEIAI-TGLKAMGV 684 Query: 725 RGISLAKGDQVISMAI 740 +GI++ K DQ+I + + Sbjct: 685 KGIAIGKDDQLIKVVL 700 >gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12] gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12] Length = 817 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 490/840 (58%), Gaps = 50/840 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T I + + + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++++ +VL AD D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + + + + E + I +++KG DF I +R+ G A D K E+ Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804 >gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 465 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/458 (54%), Positives = 331/458 (72%), Gaps = 9/458 (1%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +G +WNK Y K A Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD AA RYTE RL Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K AH L+ DL K+TVDF NYDG+ + P V+ + PN+LVNG GIAVGMATNIP HNL Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR + Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 247 Query: 256 IEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E + RE I+V EIPYQVNKA ++EKIAELV++KR+ I+ LRDESD+ G R+VIE+ Sbjct: 248 VEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEV 307 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A +V+LN LY T LQ F +NMVAL+ +P+ L I+ AFV R EVV RRT Sbjct: 308 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTI 367 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KARDRAH+L LAIA+AN+D ++ +IR +P P A+ L+ R W+ ++ +++ Sbjct: 368 FELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERA 427 Query: 435 DDSSY-------TIG-SDGTMYLSEVQTRAILELRLAR 464 D + G DG YL+E Q +AIL+LRL + Sbjct: 428 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQK 465 >gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330] gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1] gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330] gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1] Length = 816 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 300/840 (35%), Positives = 490/840 (58%), Gaps = 50/840 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T I + + + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++++ +VL AD D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + + + + E + I +++KG DF I +R+ G A D K E+ Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 803 >gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13] Length = 814 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/803 (37%), Positives = 454/803 (56%), Gaps = 47/803 (5%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPFRKSAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++YDA+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL DL K TV Sbjct: 83 SVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDLDKKTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + QEPVVL A YPN+LVNG GI+ G AT+IP H+LGEV+D + IDNP + Sbjct: 143 EFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIPPHHLGEVIDATIMRIDNPSV 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LM +++GPDFPTG +I G GIK AY TG+G I++RG++ +E G ++QIV+TE+ Sbjct: 203 TVDELMTVVKGPDFPTGGIIQGVEGIKKAYETGKGKIIVRGLAEVEDIRGGKQQIVITEV 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+VNKA +++KI EL +K++ I+++RDE+DR G RVVIELK+ A A+ ILN LY+ T Sbjct: 263 PYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVVIELKKEADANGILNYLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ F+ NMVA+ +P L L A++ ++EV+ R+++ LN+A++R HV+ GL Sbjct: 323 DLQITFNFNMVAIYKKRPTLMGLPHFLDAYIDHQKEVISNRSRFELNRAKERQHVVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRASKDKRHAKDNLIAK--------------------------FTFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E + L ++ E IL S +L +IK +L VK Sbjct: 417 PQAEAIVSLQLYRLTNTDITALQAEADELAKKVAELEAILGSEKKLFSVIKSDLKRVKKL 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR++I + + + + E I ED++VTV+ GYVKR L + A G Sbjct: 477 YTNGRRSKIQDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M++ D + ++T ++L F++ G V LP + G+ + NI+ +++ E Sbjct: 533 -MKETDRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDIRWKDMGQHVANIVPIDRDES 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E +++F T++G V++ +LS + + R K +A+ L D+++ V Sbjct: 592 IIKAIPVSNFEDPN---FLLFVTRNGMVKKTELSAY-KAQRYSKPLMAVNLKGDDQVVDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 DI L T+ G + F I V R + GV+GI+L D V+S +V ++ Sbjct: 648 HLTDGAQDIFLATRSGYGLWFTEEEINVVGAR-AAGVKGINLKDSDYVVS-GLVFKKES- 704 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKND----SSVEGNISEERCQELKLKEQFILTV 803 + H A ++L + ++ T K V+ N + EL FI Sbjct: 705 -KAMLFIATHRGAVKKLKITEFDKATRAKRGLVMLREVKNNPHQIAAVELVEPSSFIYVQ 763 Query: 804 SEKGFGKRTSSYDFRISNRSGKG 826 + KG ++ ++ +R ++R G Sbjct: 764 TVKGTVEKLAAASYRNNDRYSNG 786 Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 15/91 (16%) Query: 787 EERCQELKLK-------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839 +++ +E+K+ E I+TV++ G+ KRTS F SN G++ TD Sbjct: 486 QDQIEEIKINLEVMIPSEDVIVTVTKDGYVKRTSLRSFSASNGQDFGMKETD-------- 537 Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 +++ +N ++L ++KG + +PV+E+ Sbjct: 538 RIISKLDINTTQTLLLFTNKGNYLYLPVHEL 568 >gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii str. W23] Length = 807 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 303/803 (37%), Positives = 459/803 (57%), Gaps = 49/803 (6%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 24 YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 83 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 84 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 143 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I P Sbjct: 144 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 203 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME+I+GPDFPTG +I G GIK AY TG+G I+IRG + IE G REQIV+TEI Sbjct: 204 SVDELMEVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 263 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 264 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 323 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++ ++EVV R+ Y L KA+DR H++ GL Sbjct: 324 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 383 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 384 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 417 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E LG +I+E ILS+ +LL +I L ++K + Sbjct: 418 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 477 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 478 YADKRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 533 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ L NI+++++ E Sbjct: 534 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDET 592 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ L DE++ V Sbjct: 593 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 648 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ I + T LG + F + V R + GV+GI+L + D V+S I+ +D+ Sbjct: 649 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQESDS- 706 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL----KEQFILTV 803 I A +R+ + E+ + K + + + + L EQ ++ Sbjct: 707 ----IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKRNPHRVVALFACGLEQRLMVE 762 Query: 804 SEKGFGKRTSSYDFRISNRSGKG 826 +EKG K + D R ++R G Sbjct: 763 TEKGERKELQAKDLRTNDRYSNG 785 Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ G+ KRTS F SN G++ TD ++ F +N D ++L Sbjct: 504 EDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTD--------RMLHQFEMNTTDVLLLF 555 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG+ I PV++ IR I + +DE +V I+E Sbjct: 556 TNKGSYIYCPVHQLPDIRWKDMGQHLSNIITIDRDETIVKAIPIKE 601 >gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] Length = 823 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 319/897 (35%), Positives = 485/897 (54%), Gaps = 85/897 (9%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MTE +I + + I + M++S+ YA++VI RA+PD RDGLKPVHRRIL+ M Sbjct: 1 MTE-VIDPEAGASNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 Q+G+ + K AR+ G+V+GKYHPHG++A YD+ RMAQ W++R LI+GQGNFGS+ Sbjct: 60 HQLGITHMVAHKKSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSI 119 Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180 DGD AA RYTE RL K L D+ K+TVDFR N+DG+ +EP VL YPN+LVNG Sbjct: 120 DGDNAAAMRYTEMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSE 179 Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240 GIAVGMAT++P HNL E D +A +DNP+I + + + GPDFPTG ++ G A Sbjct: 180 GIAVGMATSVPPHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQA 239 Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300 TGRG++ +R +E ++V+ +IPY VNKA ++E+IAELVREK+I +ADLR Sbjct: 240 LDTGRGAVKLRSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLR 299 Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360 DES+++G R+V+E+KR A+ I QL T L++ N++AL G P + + + + Sbjct: 300 DESNKKGIRIVLEIKREFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEH 359 Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 F A R EV+ RRT++ L++A DR H+L GL +A+ LDE + IR S + + AR Sbjct: 360 FRAHRIEVIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEAR------ 413 Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 LIDL +G D T Q +AIL+++L +LTGL DIR+E + L Sbjct: 414 -------GGLIDL-------LGIDVT------QAQAILDMKLQKLTGLQIQDIRDEHDRL 453 Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540 E+ + DIL+ R + I++ ELL + D+ R T I L + D I ED+++ Sbjct: 454 TAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVML 513 Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600 + GY+KR+ Q RG KGRS + + ++D VT +H +++ + G V+ Sbjct: 514 IGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHA 573 Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 K + +P +G+ N+ +G + ++ ES ++L V+F T G V+R Sbjct: 574 IKAYDIPDTGLGNKGRHYRNVFEGVEGN-VVAMLTVDGLESVTHSL-VIF-TAQGLVKRT 630 Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA 717 LS + R G I + L D I+ E + +++ + +RF + R Sbjct: 631 PLSAYSNATRRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAI- 689 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 GR S GVR ++L++ +V++ I+ HAD Sbjct: 690 GRTSRGVRAMNLSEDARVVAGDII-HAD-------------------------------- 716 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837 L++ ++ VSEKG GK T + +FR+ +R GKG+ T + Sbjct: 717 ----------------DLEKAHLMVVSEKGLGKATPASEFRLQSRGGKGV--TSYTPNKR 758 Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G +VA + + ++L +D+G R+ +++ RAT G I V++V Sbjct: 759 SGPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIRNGSVRNVLAV 815 >gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1] gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1] Length = 814 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 306/871 (35%), Positives = 476/871 (54%), Gaps = 91/871 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 8 LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G +HPHG++++Y+A+ RM+QDW LR +LIE GN GS+DGDPPAA RYTE RL Sbjct: 68 GNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYTEARLSSI 127 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K TV+F PN+D + EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 128 ALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P +D LM +I+GPDFPTG +I G+ GIK AY TG+G I+IRG + IE+ Sbjct: 188 IDAVIMRIDKPKCTVDELMTVIQGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGKAAIEQ 247 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QI++TE+PY+VNKA +++KI EL +K++ IAD+RDE+DR G R+VIELK+ A Sbjct: 248 GKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRIVIELKKDA 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A+ ILN LY+ T LQ +S NMVA++ +P+ +L +L A++ R+EVV R++Y L Sbjct: 308 DAEGILNYLYKNTDLQVPYSFNMVAIHERRPKLLSLPELLDAYIEHRKEVVTNRSQYELK 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LDEV+ IR S + A+ L+ + Sbjct: 368 KAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAK------------------ 409 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT ++ E L I+E IL+S +LL Sbjct: 410 --------YEFTEAQAEAIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNSEKKLL 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK+EL ++K + RRT I + + L + E I ED++VTV+ GYVKR Y Sbjct: 462 AVIKRELKAMKKQYADERRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRTSYRSY 521 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + ++T +L F+ G V+ LP + G+ Sbjct: 522 NASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRWKDVGQ 576 Query: 617 ALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKI 674 + N++ L++ + + +P DE L +VF TK G V+R +L + +Q + Sbjct: 577 HISNLIPLDRDDDLIAAVPVKRFDEP----LSLVFVTKQGMVKRTELGQYKVQRYTRPLV 632 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ + DE++ V + +LL T G + F + I + G + GV+GI+L +GD Sbjct: 633 AINVKEGDEVIHVHATDGQQSLLLITNQGYGLWFDEAEISM-VGVRAAGVKGINLKEGDH 691 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V+S ++ EG Sbjct: 692 VVSAHPIV--------------------------------------AEG----------- 702 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 EQ+++ V+++G K+ +F ++R+ +G+ K N + +V +++ + Sbjct: 703 --EQYLVIVTQRGAIKKMPLSEFTKTSRAKRGVVMLRELKTNPHRIVASVLTDKNDEMLF 760 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST 885 + ++ G + + V+ +R+A R + G I + Sbjct: 761 IRTETGEIETLSVSSLRVADRYSNGSFIIDS 791 Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust. Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 14/205 (6%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 +V V+ G VKR L Y+ QR + + +++ D V + S+L ++ G+ Sbjct: 605 LVFVTKQGMVKRTELGQYKVQRYT-RPLVAINVKEGDEVIHVHATDGQQSLLLITNQGYG 663 Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658 + + +A G IN L +G+ + + P + Y+V T+ G ++ Sbjct: 664 LWFDEAEISMVGVRAAGVKGIN---LKEGDHVVSAHPI----VAEGEQYLVIVTQRGAIK 716 Query: 659 RNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAI 713 + LS+F + +R+ + + +L + + T +ND + + T+ G+ +S++ Sbjct: 717 KMPLSEFTKTSRAKRGVVMLRELKTNPHRIVASVLTDKNDEMLFIRTETGEIETLSVSSL 776 Query: 714 RVFAGRNSVGVRGISLAKGDQVISM 738 RV A R S G I + VI M Sbjct: 777 RV-ADRYSNGSFIIDSDEAGNVIDM 800 Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust. Identities = 55/258 (21%), Positives = 107/258 (41%), Gaps = 39/258 (15%) Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ--- 704 +V TK G V+R + N S + D +LS + +LL T+ G Sbjct: 504 IVTVTKEGYVKRTSYRSY---NASNGQDFGMKESDRLLSQMEMNTTDVLLLFTRKGNYLY 560 Query: 705 CVRFPISAIR-----------VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753 C + + IR + R+ + + + + D+ +S+ V + Sbjct: 561 CPVYELPDIRWKDVGQHISNLIPLDRDDDLIAAVPVKRFDEPLSLVFVTKQGMVKRTELG 620 Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 K R L++ + +E + + + +G +Q +L ++ +G+G Sbjct: 621 QYKVQRYTRPLVAINVKEGDEVIHVHATDG-------------QQSLLLITNQGYG---- 663 Query: 814 SYDFRISNRSGKGIRATDVSKIN--EIGALVAVFP-VNDNDQ-IILVSDKGTLIRVPVNE 869 F + S G+RA V IN E +V+ P V + +Q +++V+ +G + ++P++E Sbjct: 664 -LWFDEAEISMVGVRAAGVKGINLKEGDHVVSAHPIVAEGEQYLVIVTQRGAIKKMPLSE 722 Query: 870 IRIASRATKGVVIFSTAK 887 SRA +GVV+ K Sbjct: 723 FTKTSRAKRGVVMLRELK 740 >gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG] gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG] Length = 820 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 301/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +IDNP+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSVRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 37.7 bits (86), Expect = 9.4, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S +R+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------VRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 897 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 320/880 (36%), Positives = 483/880 (54%), Gaps = 73/880 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I V + E + SYL+YA++VI+GRA+PD RDGLKPVHRRIL+GM ++G+ +K + Sbjct: 32 EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ G+V+GKYHPHG+ ++Y+AL R+AQD+S+ L++G GNFGS+D DPPAA RYTE Sbjct: 92 KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151 Query: 133 CRLQK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 CRL K A LL D+G + V+F +DGS EP VL AR PN+L+NG GIAV +ATN+ Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE VD A+ NPD LD LM ++ PDFPTG V+ ++G+K Y TG+G + +R Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLR 271 Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 G + IE+ S D++ +V++EIPYQ NKA ++E+IA+ V + I I+D+RDESDR Sbjct: 272 GRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRD 331 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVVIE+KRG A +L +LY T L+ F VN VAL KP L IL F+ FR Sbjct: 332 GMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRV 391 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 + + RRT+++L+KA+DR H++ G +I +A+ D VV+IIR S + +A ++L + Sbjct: 392 DTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHG---- 447 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++Q +IL + L RLTGL D + EL L +I Sbjct: 448 ----------------------LSDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAH 485 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSH 544 +LS++S+++ ++ QE + K+ PRRT + +E L +ED+ +D ++T+S Sbjct: 486 FQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSP--PKDNILTLSE 543 Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604 GYVKR+ + AQ RG +G+ +R D ++ +LFFS G V K Sbjct: 544 RGYVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAK 603 Query: 605 RLP------IGSPQARGKALINILSLNQGERITTIMPFPEDESS-WNNLYVVFATKHGNV 657 +P IG P +L+N + + + +T ++ + ++ VV T G V Sbjct: 604 AIPQSELNTIGVP---ATSLLNTFA-KRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKV 659 Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717 + S + GK + LD D + V + +D L T G+ + I RV Sbjct: 660 --SVASAASMLGHKGKKVITLDKGDRLQQV-MFARTSDHLFITGTGKAGKGLILHCRVGD 716 Query: 718 GR-NSVGVRGISLAK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774 R R IS K G++ ++ A+V A L+ T + Sbjct: 717 FRVVKSACRPISGIKTMGEKKVAEAVVEDAGD-------DEDDDEDDGELLPPKTVGMAI 769 Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + V SEE FIL ++KG GK ++ +R+ R G+ K Sbjct: 770 VPGERMVSA--SEEFG-------PFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKK 820 Query: 835 INE--IGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEI 870 ++ + + V + D+ D+++L + G R+ VN++ Sbjct: 821 GDDDALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDL 860 Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 ILT+SE+G+ KR +F NR +G R +SK+ L D+DQI+ SD+ Sbjct: 538 ILTLSERGYVKRICPKNFGAQNRGTRGKR---MSKLRANDELSKAMHCKDSDQILFFSDR 594 Query: 860 GTLIRVPVNEIRIASRATKGV 880 G + ++ I + T GV Sbjct: 595 GRVQKLSAKAIPQSELNTIGV 615 >gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733] gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733] Length = 817 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 490/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E +L +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESENLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T I + + + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++++ +VL AD D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQITIDPTDFPIGDRTSNGSFAMD 797 Query: 832 VSKINEI 838 K E+ Sbjct: 798 EKKGGEV 804 >gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061] gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061] Length = 812 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 289/715 (40%), Positives = 428/715 (59%), Gaps = 42/715 (5%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL DL K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAIASELLKDLDKETV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F N+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+DG + I+ P Sbjct: 143 EFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDGVIKRIEQPHC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 ++ LM +I+GPDFPTG +I G GIK AY TG+G I+IRG + IE G R+QIV+TEI Sbjct: 203 TVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIRGKAEIETIRGGRQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+VNKA +++K+ E E+++ I+++RDE+DR G R+V+ELK+ A A+ +LN LY+ + Sbjct: 263 PYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVVELKKEADANGVLNFLYKNS 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P TL IL A++A ++EVV R+ Y L KA++R H++ GL Sbjct: 323 DLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTNRSAYELRKAKERHHIVDGLI 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ LM D +T E Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLM----------------DKYDFT----------E 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q+ AI+ L+L RLT +R+E + L + I E DIL + +LL +I L +K Sbjct: 417 AQSEAIVSLQLYRLTNTDITQLRDEASELDVRIAELEDILGNEKKLLKVITNSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E I ED+ VTV+ GY+KR Y A G Sbjct: 477 YADERRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIKRTSQRSYAASNGKDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ + NI+S+++ E Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDES 591 Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686 I +P E DE+S Y++F TK G V++ +L + + R K +A+ L DE++ Sbjct: 592 IQKAIPIKEFDETS----YLLFFTKGGMVKKTELLQY-KAQRYSKPLVALNLKGNDELVD 646 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 V T + ++ + TK G + F + V R + GV+GI+L GD+V+S I+ Sbjct: 647 VHVTTGQQELFIATKNGYGLWFDEEEVSVVGPR-AAGVKGINLKDGDEVVSGQII 700 Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ G+ KRTS + SN G++ TD L+ F +N D ++L Sbjct: 503 EDVYVTVTKDGYIKRTSQRSYAASNGKDFGMKDTD--------RLIHQFEMNTTDVLLLF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG+ I PV++ IR I S +DE + I+E Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHITNIISIDRDESIQKAIPIKE 600 >gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6] gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6] gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus TK-6] Length = 761 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 285/722 (39%), Positives = 425/722 (58%), Gaps = 65/722 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT+V+I +E++ SY+ YA++VI+GRAIPD RDGLKPV RRIL+ M QMG+ K +VK A Sbjct: 3 ITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G V+G YHPHG+ A+YDAL RMAQD+++R LI GQGNFGS+DGDPPAA RY+E +L Sbjct: 63 RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAKL 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ ++TVDF PN+DGS EP +L +++PN+L NG GIAVG+AT+IP HNL Sbjct: 123 SKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV + + NP+I + +M+ I+GPDFPTG ++ + Y TGRG + +R +H Sbjct: 183 KEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGIVENYQELIEYYHTGRGHVRVRAKAH 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +EK G REQIV+TEIPYQVNKA +++++AELVRE ++ +I+++RDESD++G R+VIELK Sbjct: 243 VEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A +L +LY++T+L+ F +N V L +P++ + +L+ F+ R EV++RR K+ Sbjct: 303 RDAQGQKVLEKLYKHTALRKNFPINFVVLIDNQPKQVGIKELLQEFLRHRLEVILRRAKH 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DR H++ GL A+ +LD+V++ IR S + A+ +LM+ Sbjct: 363 HLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMK---------------- 406 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +YT LSE Q A+L++RL RLT L + E L I+ ++SS Sbjct: 407 --NYT--------LSERQANAVLDMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSEE 456 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + + QE+ + E +PRR+ + L E+E+ V ++ + + Sbjct: 457 ERIKVFIQEMEEIVKEFPSPRRSFV----LGFENEE----------------VGQITVII 496 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 Y GK M++E V D+ V + S+ G VY W I QA Sbjct: 497 Y----SNGKIMPLEEMQEEGQVVDVLDVPFSEGLFMVSNRGRVY----W---IAGSQALQ 545 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + ++ ++ + + F ++S ++ TK G V++ + DF + I Sbjct: 546 GSKVSFKEADE----SVVGAFVRSQASHR---IILITKRGYVKKIPIVDFEYKTQGMSII 598 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 + DE++ V +E DILL T+ G+ +RFPI I A S GV GI L D + Sbjct: 599 KFSEEEDEVVKVLQSPEEGDILLLTRKGKMLRFPIRDIPP-ATVGSKGVIGIKLEGDDTL 657 Query: 736 IS 737 IS Sbjct: 658 IS 659 >gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96] gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96] Length = 820 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 301/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IYDA+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62] Length = 820 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467] Length = 823 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 494/837 (59%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ + L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712] gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613] gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512] gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516] gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712] gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613] gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512] gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516] Length = 823 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 301/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IYDA+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425] gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425] Length = 839 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 319/905 (35%), Positives = 487/905 (53%), Gaps = 116/905 (12%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + ++ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 15 VIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 74 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL RM Q +S R L++G GNFGSVD DPPAA RYTE RL Sbjct: 75 RVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETRL 134 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 AH LL ++G++TV+F N+D S QEPVVL ++ P +L+NG GIAVGMATNIP HN Sbjct: 135 SPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPHN 194 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVD +A+ID PD+ +D L+E++ GPDFPTG +I+G GI+ AY TGRGSI +R V+ Sbjct: 195 LAEVVDALIALIDRPDLSVDQLLELVPGPDFPTGGIIIGTEGIREAYTTGRGSITLRAVA 254 Query: 255 HIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E+ R I++TE+PYQVNK+ ++EKIAEL+ + RI IADLRDESDR+G R Sbjct: 255 QMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGMR 314 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIELKR +L+QLYR T LQ+ F V M+AL +P + L +L+ F+ FRE + Sbjct: 315 IVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQPRQMGLKELLEHFLNFREHTL 374 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR ++ L++A+ R H++ GL A+ NLD V+ ++R + + A++ L Q N Sbjct: 375 TRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTL-QSELN------ 427 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q AIL + L RLTGL + ++R E + L +I++ Sbjct: 428 -------------------LSDRQADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLET 468 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLG 546 +L SR LL +K++L S+K + R TRI E L + E+ ++ + +S G Sbjct: 469 LLGSRHELLKALKKDLRSLKRQYADQRLTRIQTEAEPLPSV--EELAADTEVTLELSQRG 526 Query: 547 YV---------KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT----SVLFFS 593 YV +R A+ K + ++ DL + + ++L F+ Sbjct: 527 YVRCLRGGERGRRNQARSEGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFT 586 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIM---PFPEDESSWNNLYVV 649 G Y+ + +P+G + +G L+ +L + Q E I P P ++ +V Sbjct: 587 QSGKGYRVDLTAMPLGDRRDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQ------LV 640 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 + G +R L DF ++ G KL D + + +++ + T G+ +RF Sbjct: 641 LLSAEGRAKRISLEDFAEVTARGLSVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFA 700 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 I + GR ++G + I L K ++++ AIVL YD Sbjct: 701 SDEIPLM-GRTTLGQQAIRLHKQERLVG-AIVLQT---YDN------------------- 736 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 +L VSE+G+GKR R+ G Sbjct: 737 ------------------------------LLLVSERGYGKRMPLNAVRLGRLGDLG--T 764 Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889 T + + + L A+ P N +++L +DK + + + +I I + G ++ + E Sbjct: 765 TAIQFVAKPDHLAAIAPAPSNAEVMLFTDKNRMANLSLAQIPIWGKDGSGKLLLNLEVGE 824 Query: 890 RVVSV 894 ++ S Sbjct: 825 KLTSA 829 >gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Synechococcus sp. PCC 7335] gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Synechococcus sp. PCC 7335] Length = 803 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/889 (34%), Positives = 483/889 (54%), Gaps = 102/889 (11%) Query: 34 INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 ++VI+GRA+PD+RDGLKPVHRRI++ M ++G+ ++ + KCAR+ G+V+GKYHPHG+ A+ Sbjct: 1 MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60 Query: 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152 YDAL RM QD+S R L+ G GNFGSVD DPPAA RYTE RL + H LL ++ + TVD Sbjct: 61 YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120 Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212 F N+D S QEP+VL A+ PN+++NG GIAVGMATNIP HNLGEVVDG +A++D P++ Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180 Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-----KTSGDREQIV 267 ++L ++I GPDFPTGA I+ GI +AY TGRGSI IRG+++ E K R+ IV Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTKGIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAIV 240 Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327 VTE+PYQVNKA+ + KIA LV + RI I+D+RDESDR+G RVVIELKR A +ILN L Sbjct: 241 VTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILNDL 300 Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387 Y+ T+LQ+ F M+A+ +P + +L IL+AF+ FRE ++R+ + L + R+R H++ Sbjct: 301 YKMTALQTNFGALMLAIEDGQPRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFHIV 360 Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447 GL IA+ +LD+++ I+R +P+ TA+ E+++ Sbjct: 361 EGLLIALDSLDDIIDILRNAPDGTTAKVEMIE--------------------------AF 394 Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507 LS+ Q +IL + L RLTGL + +R+E + L I + ++S R+ L+ +K+EL + Sbjct: 395 DLSDRQADSILAMPLRRLTGLEQQKLRDESDELDERINQLETLVSDRNVLMKSLKKELRA 454 Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVRED-------MVVTVSHLGYVKRVPLSVYRAQR 560 +K + RRTRI +++E + ++ + GYV+R R +R Sbjct: 455 LKKKFGDRRRTRIQTEAERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKT-RTRR 513 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620 + G + + +D I + VL + G + V +PI Q++G LI Sbjct: 514 KDASGPTKALEEFDDVTIQTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIG 573 Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680 +L G +++ + ++ T G V+R S+ + G A+KL Sbjct: 574 LLPDAVGSTPDSVVTQIVLSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKD 633 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSVGVRGISLAKGDQVISMA 739 D + +D++L + G+ +RF I A ++ R + G +GI L K ++++ Sbjct: 634 DDLLKHAFIAPMGSDLVLASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSERLVG-- 691 Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799 C + K+ Sbjct: 692 --------------------------------------------------CIPVSPKDTL 701 Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 IL VS KG+GKR F+ SNR G G ++ + ++ ALV++ + +++D+ Sbjct: 702 IL-VSNKGYGKRILVSTFKTSNRGGIGSQSFKFNLKSD--ALVSLNVAVPEANLTVLTDQ 758 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 G ++ ++ + + R+ + + + E +V E+ + D ES Sbjct: 759 GRAAKIAIDSVPLQGRSQPCARLVTPERTETIV------ETLVTDMPES 801 >gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583] gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1] gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8] gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5] gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1] gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6] gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188] gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11] gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11] gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583] gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1] gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8] gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5] gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1] gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6] gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188] gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11] gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11] Length = 820 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1] gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1] gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1] gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1] Length = 820 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 494/837 (59%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ + L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248] gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134] gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860] gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109] gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411] gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470] gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635] gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102] gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis] gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411] gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109] gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860] gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134] gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248] gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102] gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635] gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470] gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137] gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000] gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017] gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027] gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244] gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031] gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302] gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341] gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346] gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B] gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630] gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A] gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus faecalis OG1RF] Length = 823 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3] gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3] Length = 820 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200] gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200] Length = 820 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 298/829 (35%), Positives = 491/829 (59%), Gaps = 52/829 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKG 826 V + + + + + E +L ++KG + S ++ IS R+ G Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNG 791 Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855] gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855] Length = 823 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312] Length = 823 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42] gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42] Length = 807 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 314/878 (35%), Positives = 485/878 (55%), Gaps = 100/878 (11%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I++PD Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LM++I+GPDFPTG +I G GI+ AY TG+G I+IRG + +E G REQIV+TEI Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVESVRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVV+ELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ+ ++ NMVA++ +P +L IL A+++ ++EVV R+ + L KA++R H++ GL Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ +IR S + + A++ +M S +T +E Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNVM------------------SKFT--------FTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +I+E ILS +LL +I L +K Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GYVKR + A G Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ + NI+++++ E Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDMGQHVTNIITIDRDET 591 Query: 630 ITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILS 686 I +P E D SS Y++F TK+G V+R +++ + + R K +A+ L DE++ Sbjct: 592 IVKAIPVKEFDPSS----YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELID 646 Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 V + + + T+LG + F + V R + GV+GI++ GD V+S I+ D+ Sbjct: 647 VHVTDGGSQLFIATRLGYGLWFGEDEVNVVGAR-AAGVKGINVKDGDTVVSGQILHETDS 705 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 ++ V+++ Sbjct: 706 -----------------------------------------------------LVLVTQR 712 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866 G KR + +F ++R+ +G+ K N A V VF D I ++KG I + Sbjct: 713 GAIKRMNLSEFEKTSRAKRGVIMLRELKKNPHRA-VGVFACALADMIAAETEKGERIEIA 771 Query: 867 VNEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902 V +R R + G F T +DE V V RI S++ Sbjct: 772 VKSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807 >gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1] gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1] Length = 812 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 309/877 (35%), Positives = 473/877 (53%), Gaps = 109/877 (12%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G Sbjct: 16 MGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKPFRKSAKTVGNVIGN 75 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++++Y+A+ RM+QDW R +LIE GN GSVDGDPPAA RYTE RL A +L Sbjct: 76 YHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEARLSAIAAEMLR 135 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+GK TV+F PN+D EP VL AR+PN+LVNG GI+ G AT+IP H L EV+D + Sbjct: 136 DIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALDEVLDAVLM 195 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +D P++ +D LM +++GPDFPTG +I G GIK AY TGRG I++R + +E G +E Sbjct: 196 RLDKPNVTVDELMTVMKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQAVVEPIKGGKE 255 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QIV+TE+PY VNKA +++KI E +KR+ IA++RDESDR G RVVIELK+ IL Sbjct: 256 QIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIELKKDVPGQGIL 315 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 L++ T LQ ++ NM+A++ +P TL +L A++A ++EVV R+ Y L KA+DR+ Sbjct: 316 QYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYIAHQKEVVTNRSIYDLQKAKDRS 375 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H++ GL A++ LDEV+ IR S + + A+ L ++ Sbjct: 376 HIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEK------------------------ 411 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 +EVQ AI+ L+L RLT ++R E + L I + IL S ++L+ +IKQE Sbjct: 412 --FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDELDKLIAKLEGILQSEAKLVRVIKQE 469 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDE-DCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRG 562 LL +K PRR++I + + +++ D +V E++VVTV+ GY+KR + A Sbjct: 470 LLDIKKRFTEPRRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAA---- 525 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G+ M+D D++ ++T +L F++ G + V L P R K L Sbjct: 526 SNGQD-FAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHEL----PDIRWKDL---- 576 Query: 623 SLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ I++I+P EDES N YV ATK G ++R+ L+D+ S Sbjct: 577 ----GQHISSIVPTGEDESIIAVYGFETFEQPNTYVFTATKDGQIKRSPLADYAVTRYSK 632 Query: 673 KI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 I M + + D ++ T + +++LTT +RFP+ + V G + GV+GI+L Sbjct: 633 PIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEELPV-TGVKTGGVKGITLKD 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 G+ ++ + VL D Sbjct: 692 GEALVGVN-VLQPDV--------------------------------------------- 705 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 Q+++ V+++G K+ + + ++ R+ +G++ K N +VAV D + Sbjct: 706 -----TQYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANP-HRIVAVVQATDGE 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 Q+++ ++KG + V + A R + G A D Sbjct: 760 QVVIETEKGVQEVIDVQALSRADRHSNGSFKVDIATD 796 >gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342] Length = 823 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645] Length = 823 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141] Length = 823 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 >gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2] gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2] Length = 820 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704] gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704] Length = 820 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012] Length = 823 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSNIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVNNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 >gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol] gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol] Length = 820 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 300/837 (35%), Positives = 492/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 V + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 VLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70] gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70] Length = 814 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/722 (39%), Positives = 428/722 (59%), Gaps = 38/722 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 +++ D + + + Y+ +I RA+PD+RDGLKPV RRIL+ M G +K + K A+ Sbjct: 8 LALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPFRKAAKTV 67 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G +HPHG++++YDA+ RM+QDW LR +LIE GN GS+DGDPPAA RYTE RL Sbjct: 68 GNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYTEARLSAI 127 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K TVDF PN+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 128 ASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 187 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D LM ++ GPDFPTG +I G+ GIK AY TG+G I+IRG + IE+ Sbjct: 188 IDAVIMRIDKPNCTVDELMTVLHGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGKAVIEQ 247 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QI++TE+PY+VNKA +++KI EL +K++ I+D+RDE+DR G R+VIELK+ A Sbjct: 248 AKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRIVIELKKDA 307 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A+ ILN LY+ T LQ ++ NMVA++ P+ +L +L A++ R+EVV R++Y L Sbjct: 308 DAEGILNYLYKNTDLQVPYNFNMVAIHKRHPKLLSLPELLDAYIEHRKEVVTNRSQYELK 367 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LDEV+ IR S + A+ LM + Sbjct: 368 KAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAK------------------ 409 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT ++ E L I+E IL+ +LL Sbjct: 410 --------YKFTEAQAEAIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILNDEKKLL 461 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK+EL ++K + RRT I + + +++ E I ED++VTV+ GYVKR Y Sbjct: 462 AVIKKELRAMKKQYADERRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRTSYRSY 521 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + ++T +L F+ G V+ LP + G+ Sbjct: 522 SASNGQDFG-----MKESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRWKDVGQ 576 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIA 675 + N++ L++ + I +P + + S L ++F TK G V+R +L+ + +Q +A Sbjct: 577 HISNLIPLDRNDEIIAAVPVKQFDDS---LSLIFVTKRGMVKRTELAQYKVQRYTRPLVA 633 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 M + DE++ V + +LL T G + F + I G + GV+GI+L +GD V Sbjct: 634 MNVKEDDEVIHVYVTDGQQSLLLVTNQGYGLWFDEAEIST-VGVRAAGVKGINLKEGDYV 692 Query: 736 IS 737 +S Sbjct: 693 VS 694 Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 71/139 (51%), Gaps = 16/139 (11%) Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLG 596 ++ V+ G VKR L+ Y+ QR R V M +++D V +++ S+L ++ G Sbjct: 605 LIFVTKRGMVKRTELAQYKVQRYT---RPLVAMNVKEDDEVIHVYVTDGQQSLLLVTNQG 661 Query: 597 FVYKEKVW--RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 + +W I + R + I +L +G+ + + P ++E ++Y+V AT+ Sbjct: 662 Y----GLWFDEAEISTVGVRAAGVKGI-NLKEGDYVVSAHPIGKEE----HMYLVIATQR 712 Query: 655 GNVRRNKLSDFIQINRSGK 673 G V++ LS+F + +R+ + Sbjct: 713 GAVKKMPLSEFEKTSRAKR 731 Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQII 854 +Q +L V+ +G+G F + S G+RA V IN E +V+ P+ + + Sbjct: 651 QQSLLLVTNQGYGLW-----FDEAEISTVGVRAAGVKGINLKEGDYVVSAHPIGKEEHMY 705 Query: 855 LV--SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 LV + +G + ++P++E SRA +GVV+ K Sbjct: 706 LVIATQRGAVKKMPLSEFEKTSRAKRGVVMLRELK 740 >gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905] gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905] Length = 812 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 309/877 (35%), Positives = 472/877 (53%), Gaps = 109/877 (12%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M + + Y+ +I RA+PD RDGLKPV RRIL+ M G K + K A+ G V+G Sbjct: 16 MGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKPFRKSAKTVGNVIGN 75 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++++Y+A+ RM+QDW R +LIE GN GSVDGDPPAA RYTE RL A +L Sbjct: 76 YHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRYTEARLSAIAGEMLR 135 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+GK TV+F PN+D EP VL AR+PN+LVNG GI+ G AT+IP H L EV+D + Sbjct: 136 DIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALDEVLDAVLM 195 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +D P +D LM +++GPDFPTG +I G GIK AY TGRG I++R + +E G +E Sbjct: 196 RLDKPTATVDELMTVLKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRAQAVVEPIKGGKE 255 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QIVVTE+PY VNKA +++KI E +KR+ IA++RDESDR G RVVIELK+ IL Sbjct: 256 QIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRVVIELKKDVPGQGIL 315 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 L++ T LQ ++ NM+A++ +P TL +L A++ ++EVV R+ Y L KA+DR+ Sbjct: 316 QYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYITHQKEVVTNRSIYDLQKAKDRS 375 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H++ GL A++ LDEV+ IR S + + A+ L + Sbjct: 376 HIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAK------------------------ 411 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 +EVQ AI+ L+L RLT ++R E + L I + IL S ++L+ +IKQE Sbjct: 412 --FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDDLNKLIAKLEGILQSEAKLVRVIKQE 469 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDE-DCIV-REDMVVTVSHLGYVKRVPLSVYRAQRRG 562 LL +K PRR+RI + + +++ D +V E++VVTV+ GY+KR + A Sbjct: 470 LLDIKKRFTEPRRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYIKRTSTRSHAA---- 525 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G+ M+D D++ ++T +L F++ G + V L P R K L Sbjct: 526 SNGQD-FAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHEL----PDIRWKDL---- 576 Query: 623 SLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ I++I+P EDES N Y++ ATK G ++R+ L+D+ S Sbjct: 577 ----GQHISSIVPTSEDESIIAVYGFETFEQPNTYILTATKDGQIKRSPLADYAVTRYSK 632 Query: 673 KI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 I M + + D ++ T + ++LLTT +RFPI + V G + GV+GI+L Sbjct: 633 PIKTMNVKAGDAMIYASFMTDDVELLLTTDTAYAIRFPIEELPV-TGVKTGGVKGITLKD 691 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 G+ ++ + + L+ D + Sbjct: 692 GEALVGVNV----------------------------------LQPDET----------- 706 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851 Q+++ V+++G K+ + + ++ R+ +G++ K N +VAV +++ Sbjct: 707 ------QYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANP-HRIVAVIQATNDE 759 Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888 Q+++ ++KG + V + A R + G A D Sbjct: 760 QVVIETEKGVQEFIDVQALTRADRHSNGSFKVDIATD 796 >gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis str. JH642] gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis str. SMY] gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis] gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp. subtilis str. 168] Length = 806 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I P Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME+I+GPDFPTG +I G GI+ AY TG+G I+IRG + IE G REQIV+TEI Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++ ++EVV R+ Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E LG +I+E ILS+ +LL +I L ++K + Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ N++++++ E Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ L DE++ V Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ I + T LG + F + V R + GV+GI+L + D V+S I+ +D+ Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 I+ +++G Sbjct: 706 ----------------------------------------------------IVLFTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR S +F ++R+ +G+ K N +VA+F +++ ++KG + Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQT 772 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 E+R R + G F + +V +V R+ + Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806 >gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98] gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98] Length = 820 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 407 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 516 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 571 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 626 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 627 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 686 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 742 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 743 LLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 799 Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 502 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 548 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 549 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 601 >gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto BEST195] Length = 806 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I P Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME+I+GPDFPTG +I G GI+ AY TG+G I+IRG + IE G REQIV+TEI Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++ ++EVV R+ Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E LG +I+E ILS+ +LL +I L ++K + Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ N++++++ E Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ L DE++ V Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ I + T LG + F + V R + GV+GI+L + D V+S I+ +D+ Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 I+ +++G Sbjct: 706 ----------------------------------------------------IVLFTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR S +F ++R+ +G+ K N +VA+F +++ ++KG + Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQA 772 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 E+R R + G F + +V +V R+ + Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806 >gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168] Length = 806 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 307/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I P Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME+I+GPDFPTG +I G GI+ AY TG+G I+IRG + IE G REQIV+TEI Sbjct: 203 SVDELMELIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++ ++EVV R+ Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E LG +I+E ILS+ +LL +I L ++K + Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ N++++++ E Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ L DE++ V Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ I + T LG + F + V R + GV+GI+L + D V+S I+ +D+ Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 I+ +++G Sbjct: 706 ----------------------------------------------------IVLFTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR S +F ++R+ +G+ K N +VA+F +++ ++KG + Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQT 772 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 E+R R + G F + +V +V R+ + Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLHTEQ 806 >gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043] Length = 823 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/837 (35%), Positives = 493/837 (58%), Gaps = 52/837 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+ + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 5 EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ R++QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 65 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TVDF N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E++DG V +ID+P+ L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV++EIPY+VNKA +++K+ E+ K++ IA++RDESDR G ++ Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ P++ L IL++++ R+ V++ Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 R ++ L+KAR R H++ GL A++ LD+V+ IR S + + A++ Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKK--------------- 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +L+ D ++T E Q AI+ L+L RLT D++ E +L +I E L+I Sbjct: 410 -NLVSDYAFT----------EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYV 548 L++ L ++K+EL VK + PR T+I E + +++ E ++ +ED+VVTV+H GY+ Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A + G M++ DF+ V+T +L ++ G + V LP Sbjct: 519 KRSSIRSYTASKPEEIG-----MKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + IL+L E I + P+ E + VF TK G +++ K++DF + Sbjct: 574 LRWKEIGEHISQTILNLAIDESIIAVYPYKELSPTKT---FVFITKAGMIKQTKMADF-E 629 Query: 668 INRSGK----IAMKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL S +DEI +V ++ D+ L + G +R+P+ + V G Sbjct: 630 PWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEVPV-VGSK 688 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + D V++ +++H++ D I + +R+++ + ++ K Sbjct: 689 AAGVKSMNLKEDDYVVN-GLLVHSEGDTP--IVIVTQRGGVKRMLAQELTQLGRAKRGLM 745 Query: 781 VEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834 + + + + + + E +L ++KG + S ++ IS R+ G D K Sbjct: 746 LLRELKKNPHRVVFMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQK 802 Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 26/115 (22%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-----LVAVFPVNDN 850 +E ++TV+ +G+ KR+S IR+ SK EIG L+ VN Sbjct: 505 QEDVVVTVTHEGYIKRSS-------------IRSYTASKPEEIGMKEGDFLLYAGEVNTL 551 Query: 851 DQIILVSDKGTLIRVPVNEI------RIASRATKGVVIFSTAKDERVVSVERIRE 899 D ++LV++KG +I PV+E+ I ++ I + A DE +++V +E Sbjct: 552 DHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQ--TILNLAIDESIIAVYPYKE 604 >gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra Length = 500 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 247/492 (50%), Positives = 348/492 (70%), Gaps = 13/492 (2%) Query: 40 RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99 RA+PD+RDGLKPVHRR+LF M +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R Sbjct: 2 RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61 Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159 MAQ +SLR +L++GQGNFGSVDGD AA RYTE R+ K AH +L DL K+TVDF PNYDG Sbjct: 62 MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121 Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219 + P V+ R PN+LVNG GIAVGMATNIP HNL EV++ C+A+IDN ++ + ++E Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181 Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNK 277 I GPDFPT +I GR GI+ AY TGRG I IR + I+ +T+G +E I+V E+PYQVNK Sbjct: 182 IPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTG-KETIIVHELPYQVNK 240 Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337 A ++EK+AELV++KR+ I+ LRDESD+ G R+VIE+KRG +V+LN LY+ T +Q F Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300 Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397 +NMVAL +P+ F + +L+AFV R EVV RRT + L KARDRAH+L GL+IA+AN+ Sbjct: 301 GLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANI 360 Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS---------YTIGSDGTMY 448 D ++ +I+ S N + + +L+ + W ++ +++ + + Y I DG Y Sbjct: 361 DPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGI-RDGLYY 419 Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508 L+ Q +AI++L+L +L+G+ D I +E +L I E + IL++ +RL+ +I +EL+++ Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAI 479 Query: 509 KDELDTPRRTRI 520 +DE RRT I Sbjct: 480 RDEFGDERRTEI 491 >gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15] gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15] Length = 817 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 299/840 (35%), Positives = 488/840 (58%), Gaps = 50/840 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++++ +VL AD D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + + + + E + I+ +++KG DF I +R+ G A D K E+ Sbjct: 745 MRELKKNPHRIIYMSEGRSKEIILMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEV 804 >gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484] gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484] Length = 764 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 297/729 (40%), Positives = 428/729 (58%), Gaps = 66/729 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +E++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M MG+ K +VK A Sbjct: 3 IIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKSA 62 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G V+G YHPHG+ A+YDAL RMAQD+++ LI GQGNFGSVDGDPPAA RYTE +L Sbjct: 63 RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAKL 122 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A LL+D+ K+TVDF PN+DGS +EP VL +++PN+L NG GIAVG+AT+IP HNL Sbjct: 123 SRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNL 182 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV + + NP + +M II+GPDFPTG ++ + Y GRG + IR +H Sbjct: 183 SEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGIVENYQELLEFYEKGRGQVRIRAKAH 242 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 +EK +G REQIVVTEIPYQVNKA ++++IAELVR+ R+ +I+D+RDESD++G R+VIELK Sbjct: 243 VEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIELK 302 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R AS + +L +LY+ T+L+ F +N V L +P + + +L+ F+ R EV++RR++Y Sbjct: 303 RDASGEKVLEKLYKLTALRKNFPINFVVLIDGEPRQVGIKTLLQEFIRHRLEVILRRSRY 362 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 LL KA +R H++ GL A+ANLD V+ IR S + AR +L ++ Sbjct: 363 LLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYG------------- 409 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 L+ +Q A+L++RL RLT L R+ + E L +++ ++ S Sbjct: 410 -------------LTPLQAEAVLDMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSED 456 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555 + I+ +E+ + L + RRT VEGL E ED + V + G + +P Sbjct: 457 ERVRILIEEMEELIRTLPSVRRT-FVEGL---EGEDKT--GSITVVIYQNGRI--LP--- 505 Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615 V +E V ++ V + SS G VY W IG QA Sbjct: 506 -------------VTSMEEGVVVNILEVPYDDGLFLVSSKGRVY----W---IGGSQALQ 545 Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675 + I++ QGE + + F ++S +V AT G +++ L DF + G Sbjct: 546 GSRIDL--KEQGEYV--VGAFVRSQASDR---LVLATAMGYIKKIPLVDF-EYRAQGMPI 597 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 +KL DEI+ + +E D+LL T G+ +RFP+ + AG S GV GI L D+V Sbjct: 598 IKLAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPP-AGVGSKGVVGIKLEDKDRV 656 Query: 736 ISMAIVLHA 744 + + +L A Sbjct: 657 VGVKAILGA 665 >gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980] gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980] Length = 816 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++++ +VL AD D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIVNGLLVL---ADGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQITIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor lactoaceticus 6A] gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor lactoaceticus 6A] Length = 473 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 247/494 (50%), Positives = 345/494 (69%), Gaps = 26/494 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 EE + I V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+ +K Sbjct: 2 EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R L++G GNFGSVDGDPPAA R Sbjct: 62 PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ + A +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG GIAVGMATN Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IP HNL EV+D V ++DN + LD +M+II+GPDFPTG I+G+ GIK+AYATG+G I+ Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +R + IE+TS R++I+VTE+PY VNKA ++EKIAELV EK+I I+D+RDESD++G R Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE+K+ A A+V+L QLY+ T LQ F + M+AL +P+ TL+ +L ++ ++EV+ Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 VRRT+Y L KA +RAH+L GL A+ ++DE++ IIR S A+ L+ R Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +E Q +AIL++RL RLTGL R I EL L I+ + Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455 Query: 490 ILSSRSRLLGIIKQ 503 +L+S + + IIK+ Sbjct: 456 VLASDAMVKEIIKK 469 >gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6] gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6] Length = 1340 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 304/780 (38%), Positives = 451/780 (57%), Gaps = 92/780 (11%) Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178 S+DGDP AA RYTE RL A LL D+ K+TVDFR N+DGS++EP VL PN+L+NG Sbjct: 629 SIDGDPAAAMRYTEARLSTIAEELLFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNG 688 Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238 GIAVGMATNIP HNL E+ D + +IDNP++ ++ L++II GPDFPT ILG GI Sbjct: 689 AAGIAVGMATNIPPHNLKELCDAIIYLIDNPEVTVEELIKIIPGPDFPTAGNILGTEGIL 748 Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298 AY TGRG I +R +HIE+ + IVVTE+PYQVNKA + E+IAEL ++K+I I D Sbjct: 749 AAYGTGRGQITLRAKAHIEEANRGAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIRD 808 Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIG 356 +RDESDR G R+VI LK+ A +LN LY++T +Q+ F +NM+AL G +P+ TL Sbjct: 809 VRDESDRAGMRLVILLKQDAQPKRVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLKR 868 Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416 +L+ +VA R+EV+ RRT+Y L KAR RAH+L GL IA+ N+D ++R IR S + E AR Sbjct: 869 MLQEYVAHRQEVIRRRTEYDLEKARARAHILEGLKIALDNIDAIIRTIRESRSVEIARNN 928 Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 L+ S+++ LSE+Q +AIL+++L RL L R I +E Sbjct: 929 LI------------------SNFS--------LSEIQAQAILDMQLRRLAALERKKIEDE 962 Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVR 535 + I E DIL++ R+L +I+Q+L +K++ RRTRI+ + ++ DED I Sbjct: 963 YAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDERRTRIIPDASGEVSDEDLIPD 1022 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 +++T++ GYVKR VYR QRRGG+G + R++D V L +H ++LFF+ Sbjct: 1023 VRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDLVRHLLTCGSHDNLLFFTDK 1082 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 G VY+ K +P + A+G L+N++SL+ GE++T+++ P+ ++ Y+V AT G Sbjct: 1083 GKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAVPD----YDGEYLVMATHRG 1138 Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715 ++R +LS++ Q+ +G IA+ L+ D + V D+L+TT GQ +RF A+R Sbjct: 1139 KIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTVKGQTIRFQQQAVRS 1198 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 GR + GV GI+L++GD+VISM + + D+D Sbjct: 1199 M-GRPATGVNGINLSEGDRVISMELAI-PDSD---------------------------- 1228 Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 +L V+ +GFGKRT D+ R+ G+ + Sbjct: 1229 ------------------------LLVVTARGFGKRTELGDYPTKGRATGGVITIRLRPG 1264 Query: 836 NEI-GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +E+ GA + VN + V+ G ++R EI SRAT+GV + + +RV ++ Sbjct: 1265 DEVAGAAI----VNQRSLLTFVTAAGVVMRTSAGEISQLSRATQGVTVVNPDDGDRVAAL 1320 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 63/108 (58%), Positives = 84/108 (77%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + VSIT EM+ +YL+YA++VI+ RA+PD RDG+KPV RRI++GM MG N Y K A Sbjct: 6 VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123 RI G+V+GK HPHG++++YDALAR+AQ W++R LI+GQGNFG GD Sbjct: 66 RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGD 113 >gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM 2522] Length = 834 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 290/731 (39%), Positives = 433/731 (59%), Gaps = 40/731 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E++ + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M +K Sbjct: 2 QEKERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G V+G YHPHG++++YDA+ R +QDW +R LL++ GN GS+DGDPPAA RY Sbjct: 62 FRKAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + LL D+ KDTVDF N+D S +EPVVL +R+PN+LVNG GI+ G AT+I Sbjct: 122 TEARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H+LGEV+D + +++PD +D LM+ I+GPDFPTG I G G+K AY TG+G IV+ Sbjct: 182 PPHHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE G ++QIV+TEIPY+VNKA +++++ EL +K++ IA++RD++DR G R+ Sbjct: 242 RGKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A + IL+ LY+ T LQ ++ NMVA+ P+ L +L+A++ ++EVV Sbjct: 302 VVELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRTK+ LNKA++RAH++ GL A++ LDEV++ IR S D KD Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRAS-----------------KDKKDA 404 Query: 431 IDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 D + D MY +E Q AI+ L+L RLT + E + L I++ Sbjct: 405 KDRLQD----------MYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEA 454 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGY 547 ILSS L+ IK+EL +K + RRT I + + D++ E I ED+ VTV+ GY Sbjct: 455 ILSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGY 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 VKR L Y A G M++ D + ++T ++L F+ G V +LP Sbjct: 515 VKRSSLRSYAASNGEPPG-----MKETDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLP 569 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-I 666 + G+ + N+++++ + I T +P E S YV+FATK G V++ LS++ Sbjct: 570 EIRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDSE---YVLFATKLGMVKKTVLSEYKA 626 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 Q N +A+KL DE++SV +DI T G + F + G+ + GV+ Sbjct: 627 QRNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSA-TGQRTAGVKA 685 Query: 727 ISLAKGDQVIS 737 I+L K D V+S Sbjct: 686 INLKKDDFVVS 696 Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/121 (22%), Positives = 62/121 (51%), Gaps = 16/121 (13%) Query: 758 MSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLKEQFIL-------TVSEKGFG 809 +S+++ LI+ E+ +K + + E+ ++LK+ + ++ TV+++G+ Sbjct: 456 LSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYV 515 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869 KR+S + SN G++ TD L+ +N D ++L + KG+ + +PV++ Sbjct: 516 KRSSLRSYAASNGEPPGMKETD--------RLLYSLEINTTDTLLLFTRKGSFLFLPVHQ 567 Query: 870 I 870 + Sbjct: 568 L 568 >gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039] gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162] gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071] gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071] gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039] gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162] Length = 816 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101] gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101] Length = 873 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 295/785 (37%), Positives = 441/785 (56%), Gaps = 93/785 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + S+ EMQ SYL YA++VI+GRA+PD+RDG KPVHRRI++ M ++G+ ++ + KCA Sbjct: 12 VITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPFRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDA+ RM Q++S R L++G GNFGS+D DP AA RYTE RL Sbjct: 72 RVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYTESRL 131 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL + + VDF N+DGS QEP VL A+ P +L+NG GIAVGMATN+P HN Sbjct: 132 ASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNVPPHN 191 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+IDNP+I L E+I GPDFPTG I+ GI + Y GRGSI +RGV+ Sbjct: 192 LGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPMRGVA 251 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IE+ R + IVVTE+P+QVNKA +EK A+LV +I IADLRDESDR G R Sbjct: 252 TIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDRSGIR 311 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A V+L+ LYR T L S F M+AL +P++ +L +L+ F+ FREE + Sbjct: 312 VVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFREETL 371 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R + L A+ R+H++ GL A+ LD V+ I+R +P+ TA+ + Sbjct: 372 TRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE---------- 421 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++ LSE Q AIL + + RLTGL + + E L +I+E + Sbjct: 422 ----------------SLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELEN 465 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------------------L 525 +L R +LL +K+EL ++K + + PRRTRI++ + + Sbjct: 466 LLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKEI 525 Query: 526 DMEDEDCIVR--------------------EDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 D++ + +++ E +V+ SH GYV+R+P + + K Sbjct: 526 DIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKK- 584 Query: 566 RSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA------RGKAL 618 S + M + EDF T++ +T +++ + G Y KV +P S ++ +G L Sbjct: 585 -SHITMENSEDFTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPL 643 Query: 619 INILSLNQGERIT------TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 + +L + + IT I F +E+ N ++ T++G ++R LSD + G Sbjct: 644 VTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIML-TQNGKIKRLCLSDLSDMRNRG 702 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAK 731 +KL DE+ V ++L T G+ +R I ++ GR + G + L K Sbjct: 703 VTVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRK 762 Query: 732 GDQVI 736 ++++ Sbjct: 763 QEELV 767 >gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328] gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328] Length = 876 Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust. Identities = 322/906 (35%), Positives = 479/906 (52%), Gaps = 141/906 (15%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 12 VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL R+ Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL +G+ TVDF N+D S QEP VL A+ P +++NG GIAVGMATNIP HN Sbjct: 132 AAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGEVVDG +A+ID+PD+ LM++I GPDFPTG I+ GI AY +GRGSIV+RGV+ Sbjct: 192 LGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVATAGIAEAYTSGRGSIVMRGVA 251 Query: 255 HIEK--TSG---DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 IE+ T+G + IVVTE+P+QVNKA +EK+A LV ++ I+D+RDESDR+G R Sbjct: 252 KIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGIR 311 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIELKR A+ +V+L+ LY++T L S F +AL +P + +L IL+ F+ FRE+ + Sbjct: 312 VVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILQEFLGFREQTL 371 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 +RR + L A RA ++ GL A+A LDEV+ I+R +P+ +A+ L R Sbjct: 372 LRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETR--------- 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 +DL + Q IL + L RLT L ++ E L +I Sbjct: 423 -LDLTGE----------------QADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRL 465 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-----------------LLDMEDEDC 532 +LS R+ LL +K+EL S+K PRRTRIV + Sbjct: 466 LLSERAELLKSLKKELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSK 525 Query: 533 IVR------EDMVVTVSHLGYVKRV-PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585 I+R E+ +V ++ GYV+RV P ++ R Q R + +DF ++ +T Sbjct: 526 ILRPQLPAVEETLVEMTLKGYVRRVTPSALSRPQSR----EDITIEAIDDFPVASYLTTT 581 Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN-------------------Q 626 +++ + +G Y V +P S ++RG LI +LS + Sbjct: 582 AETLVIINRMGKAYPLSVADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGA 641 Query: 627 GERITTIMPFPEDESSWNNLY-----VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681 G + + + + +S + + ++ + G ++R +DF+ ++ G MKL Sbjct: 642 GLQSSPLRRTTDGGTSPKSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDN 701 Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAI 740 DE+ + ++L T G+ +R I++ ++ GR + G L K +Q++ I Sbjct: 702 DELSYANLAATGDQVVLATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVG-CI 760 Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800 L + + L QFI Sbjct: 761 TLSSTGE-----------------------------------------------LNNQFI 773 Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFP-------VNDNDQ 852 L VSE+G+ KR S + S R G G + ++ + L A+ P ++N Sbjct: 774 LLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHTRDDACRGLAAISPGEVVYCLTSENRM 833 Query: 853 IILVSD 858 + LV D Sbjct: 834 VTLVPD 839 >gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636] gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636] Length = 816 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10] gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10] Length = 815 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 281/734 (38%), Positives = 438/734 (59%), Gaps = 40/734 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E+++ + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M +K Sbjct: 2 EQKERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G V+G YHPHG++++Y+A+ R +QDW +R +L++ GN GSVDGDPPAA RY Sbjct: 62 FRKSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVDF PN+D S +EPVVL YPN+LVNG GI+ G AT+I Sbjct: 122 TEARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P H+LGEV+D + +D+PD + L+ I+GPDFPTG +I G G++ AY +G+G +V+ Sbjct: 182 PPHHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGIIQGIEGLQKAYESGKGKVVL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + ++ G++EQI++TEIPY++NKA +++K+ EL +K++ IA++RD++DR G R+ Sbjct: 242 RGKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A + IL+ LY+ T LQ + NMVA++ P+ L +L A++ ++EVV Sbjct: 302 VIELKKEADSQGILHFLYKNTDLQVSYHFNMVAIHNKTPKLMGLKQMLDAYIQHQKEVVT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT + LNKARDRAH++ GL A++ LDEV+ IR S + + A+ L Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRLQ------------ 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +SY +E Q+ AI+ L+L RLT + E L IK+ I Sbjct: 410 ------ASYQ--------FTEPQSEAIVNLQLYRLTNTDITTLEKEAGELRELIKKLEAI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548 L S L+ IK+EL +K RRT + + D++ E + E++ V+V+ GYV Sbjct: 456 LESEKNLIKEIKKELRYIKKTYTDERRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR + Y A G+ S M++ D + V+T ++LFF+ G V +LP Sbjct: 516 KRSSIRSYTAS--NGEEPS---MKETDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPE 570 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDF-I 666 + G+ + NI++++Q + I +P E E W ++FATK G V+R+ L D+ Sbjct: 571 TKWKDGGQHIANIVTMDQDDPIIHAIPVQEFREDRW----LLFATKSGMVKRSVLKDYHA 626 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 Q + A+KL + DE+++V E ++ L TK G + F + V G+ + GV+G Sbjct: 627 QRHSKALTALKLKTDDELINVYLTNGEENLFLATKKGYGLWFSEEEVSV-TGQRTAGVKG 685 Query: 727 ISLAKGDQVISMAI 740 I+L +GDQ+ ++++ Sbjct: 686 INLKEGDQLAALSV 699 >gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6] gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF] gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6] gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF] Length = 817 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 487/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797 Query: 832 VSKINEI 838 K E+ Sbjct: 798 EKKGGEV 804 >gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5] gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5] Length = 819 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 312/876 (35%), Positives = 484/876 (55%), Gaps = 90/876 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +L++G GN+GS D DP AA RYTE RL A LL D+ K TV Sbjct: 83 SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDIEKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +RYPN+LVNG GI+ G AT IP HNL EV+D C+AV+ P+I Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +LD +M I+GPDFPTG +I+G GI +AY TG+G + +R + IE G ++QIV+TEI Sbjct: 203 ELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ IA++RDES R+G R+V+ELK+ A A+ IL L++ T Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLFKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P++ L +L A++ + EVV RT++ L KA DRAHVL GL Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLSAYIHHQREVVTHRTQFELEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDEV+ I+ S N + A+ L W +E Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q +IL L+L RLT L ++ EL+ L +I+ IL S +L+G+I++EL+ ++++ Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREK 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + + + E + ED++VT+S+ GY+KR S+ R GG+ S Sbjct: 477 YGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELESSG 534 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 V ++ D++T LF V+T ++L F+S G + V ++P + G A++N++ + + + Sbjct: 535 V-KEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDH 593 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 I +++P + + +L VF ++ G V+R L +++ A K+ + D I+ V Sbjct: 594 IVSVIPVSNFDEAGKSL--VFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVM 651 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 DI+L +K G +RF + GR S GVRGI L GD+V++ V Sbjct: 652 SDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV-------- 702 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 +ND EG ILT+++ G+G Sbjct: 703 --------------------------END---EGE---------------ILTITDLGYG 718 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIRV 865 KR+ D+ +R GKG+ + + + A+V F + QI S+ G + Sbjct: 719 KRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPI 778 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 ++ IA R + G ++ K+ ++V + + +E Sbjct: 779 HTEKVPIAERKSIGKLLADVGKNGQIVDLVSLPHAE 814 >gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551] gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551] Length = 808 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/839 (36%), Positives = 468/839 (55%), Gaps = 56/839 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G K + K A+ Sbjct: 10 LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++YDA+ RM+Q+W +R +LIE GN GS+DGDPPAA RYTE RL Sbjct: 70 GNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K TV+F N+D + EP VL A +PN+LVNG GI+ G AT +P H+LGEV Sbjct: 130 AAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P ++ LM I+GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 190 IDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKTEVES 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIP++VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 250 IRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELKKDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A +L+ LY+ T LQ ++ NMVA+ +P+ +L IL A++ + EVV R+KY L Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTNRSKYELQ 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R H++ GL A++ LDEV+ IR S + A+ L+ + Sbjct: 370 KAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT ++ E LG +I E +IL S +L Sbjct: 412 --------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLF 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK+EL VK + T RR++I + +++ E + E+++VTV+ GYVKR L Y Sbjct: 464 NVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M+D D + + ++T ++L F++ G V LP + G+ Sbjct: 524 AASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQ 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674 ++NI+ +++ E+I +P E + N Y++F TK+G V++++L + + R K + Sbjct: 579 HIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQY-KAQRYSKALV 634 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V + + + T+ G +RF I + R S GV+GI+L D Sbjct: 635 AVNLKGDDEVVDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRAS-GVKGINLKDDDY 693 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790 V+S I D DE + ++ QR + + EE K + + Sbjct: 694 VVSGVIF-----DEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH 748 Query: 791 QELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q K+ KE +++ S KG ++ R S+R G D S E G LV V+ Sbjct: 749 QIAKVKAISKEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQS---EAGNLVDVW 804 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ++TV++ G+ KRTS + SN G++ TD ++A + +N + +++ Sbjct: 503 EEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTD--------RILAKYEINTTETLLIF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG + +PV+E IR + I K+E++V ++E Sbjct: 555 TNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE 600 >gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580] gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580] gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2] gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580] gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580] gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2] Length = 807 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 308/873 (35%), Positives = 476/873 (54%), Gaps = 104/873 (11%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ Sbjct: 10 LPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAKTV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL Sbjct: 70 GNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLAAI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV Sbjct: 130 ASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID+P+ +D LME ++GPDFPTG +I G+ GIK AY TG+G I+IRG + IE Sbjct: 190 IDAVIKRIDSPNCSVDDLMEFVKGPDFPTGGIIQGKEGIKKAYETGKGKIIIRGKAEIET 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G R+QIV+TEIP++VNKA +++K+ E E+++ I+++RDE+DR G R+VIELK+ A Sbjct: 250 IRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELKKEA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A ILN LY+ T LQ ++ NMVA++ +P L IL A++ ++EV+ R++Y L Sbjct: 310 DAQGILNFLYKNTDLQIPYNFNMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQYELK 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA++R H++ GL A++ LDEV+ IR S + A+ L+++ Sbjct: 370 KAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEK------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT ++ E L +IKE +ILS+ +LL Sbjct: 412 --------FAFTEPQAEAIVSLQLYRLTNTDITALQEEAKELDQKIKELEEILSNDKKLL 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK L VK + RR+ I E + +++ E + ED+ VTV+ GY+KR + Sbjct: 464 KVIKDSLKKVKKTYASQRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQRSF 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M+D D + ++T +L F++ G V +LP + G+ Sbjct: 524 AASNGQDFG-----MKDTDRLLCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDLGQ 578 Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + NI+S++ E I +P F E E Y++F TK+G +R +L + + R K Sbjct: 579 HITNIISIDSDESIVKAIPVREFTESE------YLLFFTKNGMAKRTQLMQY-KAQRYSK 631 Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 +A+ L DE++ V D+ + T G + F + V R + GV+G++L Sbjct: 632 ALVALNLKGDDEVVDVHVTDGTKDLFIATHSGYGLWFTEDEVSVVGAR-AAGVKGVNLKD 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791 GD V S G + EE+ Sbjct: 691 GDFVAS---------------------------------------------GQVLEEK-- 703 Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD--VSKINEIGALVAVFPVND 849 ++ V+++G KR + +F ++R+ +G+ K + I L+A + Sbjct: 704 ------DVLVLVTQRGSIKRMNRSEFEKTSRAKRGVLMLRELKKKPHRIAGLLA---CSY 754 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 +DQI L ++KG + V EI++ R + G I Sbjct: 755 HDQITLQTEKGITEEMLVKEIKLHDRYSNGSFI 787 Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ G+ KRTS F SN G++ TD L+ +N D ++L Sbjct: 503 EDVYVTVTKDGYIKRTSQRSFAASNGQDFGMKDTD--------RLLCQLEMNTTDVLLLF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG+ + PV++ IR I S DE +V +RE Sbjct: 555 TNKGSYVYCPVHQLPDIRWKDLGQHITNIISIDSDESIVKAIPVRE 600 >gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942] gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942] Length = 806 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 306/874 (35%), Positives = 475/874 (54%), Gaps = 94/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F N+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + ID+PD Sbjct: 143 EFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIDSPDC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 + LME+I+GPDFPTG +I G GI+ AY TG+G +++RG + +E G REQIV+TEI Sbjct: 203 TVTELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKVIVRGKAEVETIRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++A ++EVV R+ Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLTAILDAYIAHQKEVVTNRSIYELQKAKDRHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRSSNDKRDAKNNLISK--------------------------FEFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L I+E IL++ +LL +I L +K Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKNIQELESILNNDKKLLKVITSSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 477 YADGRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ N++S+++ E Sbjct: 533 -MKDTDRLLHQFEMNTTDVLLMFTNKGSYIYCPVHQLPDIRWKDMGQHFTNMISIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ + DE+ V Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNVKGDDELTDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ + + T LG + F + V R + GV+GI+L +GD V+S I+ AD+ Sbjct: 648 HVTNGESQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEGDFVVSGQILHEADS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 ++ +++G Sbjct: 706 ----------------------------------------------------LVLATQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR S +F ++R+ +G+ K N A VAVF D+++ ++KG + V Sbjct: 714 AVKRMSLSEFDKTSRAKRGVIMLRELKKNPHRA-VAVFACRLTDRLMFETEKGETKELLV 772 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 E+R R + G + + +V++ R+ + E Sbjct: 773 KELRTNDRYSNGSFLIDEEEAGKVIAAWRLEKEE 806 >gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04] gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C] gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A] gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B] gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01] gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01] gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B] gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A] gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C] gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04] Length = 816 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679] gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679] Length = 816 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502] gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502] Length = 817 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797 Query: 832 VSKINEI 838 K E+ Sbjct: 798 EKKGGEV 804 >gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933] gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408] gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68] gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933] gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408] gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68] Length = 817 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 687 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 688 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 744 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 745 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 797 Query: 832 VSKINEI 838 K E+ Sbjct: 798 EKKGGEV 804 >gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 261/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 244 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 303 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA RYTE R+ Sbjct: 304 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 363 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 364 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 423 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 424 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 483 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 484 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 543 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 544 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 603 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 604 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 649 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 650 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 697 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523 LL +++ EL ++D RRT I G Sbjct: 698 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 726 >gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317] gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082] gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317] gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082] Length = 816 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 302/847 (35%), Positives = 486/847 (57%), Gaps = 64/847 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNI----------SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 + SE R +E+ L +++KG DF I +R+ G A D Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITL-------MNQKGQQLTIDPTDFPIGDRTSNGSFAMD 796 Query: 832 VSKINEI 838 K E+ Sbjct: 797 EKKGGEV 803 >gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501] gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501] Length = 817 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 300/842 (35%), Positives = 489/842 (58%), Gaps = 54/842 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 409 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 410 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 517 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 572 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 628 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGR 719 + +S ++ MKL + DE+++V +E+ D+ L T G +R+P++ + V G Sbjct: 629 WRTYKSRPLSCMKLKAEEDELIAV--YLKEDRPGLDVFLVTYQGMGLRYPLTDVPV-VGA 685 Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779 + GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K Sbjct: 686 KAAGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGV 742 Query: 780 SVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 +V + + + + + E + I +++KG DF I +R+ G A D K Sbjct: 743 TVMRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGG 802 Query: 837 EI 838 E+ Sbjct: 803 EV 804 >gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410] gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410] Length = 822 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 299/840 (35%), Positives = 486/840 (57%), Gaps = 50/840 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 Query: 782 EGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 + + + + + E + I +++KG DF I +R+ G A D K E+ Sbjct: 744 MRELKKNPHRIIYMSEGRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEV 803 >gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175] Length = 514 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 263/534 (49%), Positives = 363/534 (67%), Gaps = 27/534 (5%) Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69 E + IT +++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M +G+ +K Sbjct: 7 ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 66 Query: 70 KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129 Y K ARI GEV+GKYHPHG+ A+Y + RMAQD+S R +L++G GNFGSVDGD AA R Sbjct: 67 AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 126 Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189 YTE R+ K + LL D+ KDT+D+ NYDGS +EPV+L AR+PN+LVNG GIAVGMATN Sbjct: 127 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 186 Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249 IPTH+LGEV+DG +A+ +PDI + LME I GPDFPT +I+GR+GI+ AY +GRGSI Sbjct: 187 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 246 Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +RG IE+ +E IV+TEIPYQVNKA ++E+IAEL REK+I I L DESDR G R Sbjct: 247 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 306 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +VIE++R SA VI+N L++ T+LQ+ F +NM+AL P+ L IL ++ ++ V+ Sbjct: 307 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 366 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RRT++ L KA RAH+L GL IA+ N+D ++++IR S + A+ LM + +N Sbjct: 367 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ-FN------ 419 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 LS+ Q +AIL++RL RLTGL R+ I E +L I + Sbjct: 420 -------------------LSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 460 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTV 542 IL+ R+L II++EL +K + RRT I+ G L+ +EDED I E++ +T+ Sbjct: 461 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITL 514 >gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319] gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319] Length = 808 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 305/839 (36%), Positives = 468/839 (55%), Gaps = 56/839 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G K + K A+ Sbjct: 10 LPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGFRKSAKTV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ RM+Q+W +R +LIE GN GS+DGDPPAA RYTE RL Sbjct: 70 GNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K TV+F N+D + EP VL A +PN+LVNG GI+ G AT +P H+LGEV Sbjct: 130 AAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELPPHHLGEV 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P ++ LM I+GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 190 IDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIRGKTEVES 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIP++VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 250 IRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIVVELKKDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A +L+ LY+ T LQ ++ NMVA+ +P+ +L IL A++ + EVV R+KY L Sbjct: 310 NAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTNRSKYELQ 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KAR+R H++ GL A++ LDEV+ IR S + A+ L+ + Sbjct: 370 KAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT ++ E LG +I E +IL S +L Sbjct: 412 --------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEILHSEKKLF 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK+EL VK + T RR++I + +++ E + E+++VTV+ GYVKR L Y Sbjct: 464 NVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVKRTSLRSY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M+D D + + ++T ++L F++ G V LP + G+ Sbjct: 524 AASNGQDFG-----MKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDIRWKDMGQ 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674 ++NI+ +++ E+I +P E + N Y++F TK+G V++++L + + R K + Sbjct: 579 HIMNIVPIDKEEQIVRAIPVKEFKE---NQYLLFFTKNGMVKKSELLQY-KAQRYSKALV 634 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ L DE++ V + + + T+ G +RF I + R S GV+GI+L D Sbjct: 635 AVNLKGDDEVIDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRAS-GVKGINLKDDDY 693 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLKNDSSVEGNISEERC 790 V+S I D DE + ++ QR + + EE K + + Sbjct: 694 VVSGVIF-----DEDEALSTELFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH 748 Query: 791 QELKL----KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 Q K+ KE +++ S KG ++ R S+R G D S E G LV V+ Sbjct: 749 QIAKVKAISKEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQS---EAGNLVDVW 804 Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E+ ++TV++ G+ KRTS + SN G++ TD ++A + +N + +++ Sbjct: 503 EEVMVTVTKDGYVKRTSLRSYAASNGQDFGMKDTD--------RILAKYEINTTETLLIF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG + +PV+E IR + I K+E++V ++E Sbjct: 555 TNKGNYLYMPVHELPDIRWKDMGQHIMNIVPIDKEEQIVRAIPVKE 600 >gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506] gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506] Length = 868 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 325/947 (34%), Positives = 473/947 (49%), Gaps = 161/947 (17%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + S ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 12 VISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ ++YDAL RM Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 H +L +G+ TVDF N+D S QEP VL A P +L+NG GIAVGMATNIP HN Sbjct: 132 ASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATNIPPHN 191 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EVVDG +A+ID PD+ + L+ +I GPDFPTG I+ GI +AY G+GSI +RGV+ Sbjct: 192 LNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEIISTEGITDAYTKGKGSIAVRGVT 251 Query: 255 HIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309 +E+ R IVVTE P+QVNKA +EK+AELV + RI I+DLRDESDR+G R Sbjct: 252 RMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDESDREGIR 311 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 VVIE+KR S +L++LY T LQ F ++AL +P + TL +L+ F+ FRE + Sbjct: 312 VVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALVNGQPRQLTLRQMLQEFLNFREVTL 371 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 RR + L A R H++ GL + + NLD + I+R +P+ TA++ L R Sbjct: 372 TRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSR--------- 422 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 + SE Q AIL + + RLTGL R +++ E + L I+E Sbjct: 423 -----------------LNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQR 465 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-------------------------EG- 523 +L R LL +K+EL S+K + PRRTR+V EG Sbjct: 466 LLGDRRELLKALKKELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGR 525 Query: 524 ------------------LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY--------R 557 L + E V+ +H YV+R+ + Sbjct: 526 GSRGAGEQRGGEGKKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKS 585 Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617 AQ RGG + DF + T+ ++ + G Y K+ +P + RG Sbjct: 586 AQSRGG---------ESDFSVNTIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTP 636 Query: 618 LINILSL---------NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 +I++LS N E + + E+ + + +V T+ G ++R LS+ I Sbjct: 637 IISLLSPSATKDVAPGNLPEIVAGMFVLSENADATD---LVTLTQQGKIKRLPLSELSDI 693 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 G A+KL DE+ ++L T G+ +RF ++ ++ GR + G + Sbjct: 694 TNRGVTAVKLKDDDELRYAMLSKPGEQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQAT 753 Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 L K +Q++ I L AD Sbjct: 754 RLRKQEQLVG-CITLAADGS---------------------------------------- 772 Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847 +L VSE G+ KR R++ R G +A ++ + ALV + Sbjct: 773 ------------LLLVSELGWAKRMPVGSVRLTGRGEIGTQAFHFAEPKD--ALVGIVAA 818 Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 ++ L+++ G L+RV V +I + G + E++V V Sbjct: 819 LPRKELKLLTNNGRLLRVGVEKIAFWGKDAPGDRAVNLNPSEKIVKV 865 >gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna Length = 692 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 260/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 210 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 269 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R+TE R+ Sbjct: 270 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARM 329 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 330 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 389 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 390 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 449 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 450 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 509 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 510 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 569 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 570 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 615 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 616 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 663 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523 LL +++ EL ++D RRT I G Sbjct: 664 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 692 >gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 260/509 (51%), Positives = 344/509 (67%), Gaps = 27/509 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+ +K Y K A Sbjct: 244 INERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSA 303 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 RI G+VMGKYHPHG+++IY+A+ RMAQD+S R L++GQGNFGS+DGD AA R+TE R+ Sbjct: 304 RIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARM 363 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K LL D+ KDT+DF NYDG+ +EP VL AR+PN+L NG GIAVGMATNIP HNL Sbjct: 364 TKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNL 423 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 E+++G +++ NPDI + LME I GPDFPT +ILG++GI+ AY TGRGSI +R + Sbjct: 424 TELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAV 483 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIEL 314 IE+ G R++IVVTEIP+QVNKA M+EKIAELVR+K+I I DLRDE+ R G RVVI++ Sbjct: 484 IEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDV 543 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 ++ A+A VILN LY+ T LQ+ F VNM+AL +P+ L L ++ ++ VV RRT+ Sbjct: 544 RKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQ 603 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 Y L KA+DRAH+L GL IA+ ++DE++ IR S + A L QR Sbjct: 604 YNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------------- 649 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q +AIL++RL RLTGL RD I E N L I E IL+ Sbjct: 650 ------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILADE 697 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG 523 LL +++ EL ++D RRT I G Sbjct: 698 EVLLQLVRDELTEIRDRFGDDRRTEIQLG 726 >gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10] gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10] Length = 819 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 312/881 (35%), Positives = 485/881 (55%), Gaps = 90/881 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M G +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +L++G GN+GS D DP AA RYTE RL A LL D+ K TV Sbjct: 83 SIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSPIAMELLRDIEKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +RYPN+LVNG GI+ G AT IP HNL EV+D C+AV+ P+I Sbjct: 143 LFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVMQKPEI 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +LD +M I+GPDFPTG +I+G GI +AY TG+G + +R + IE G ++QIV+TEI Sbjct: 203 ELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRSKTVIESLRGGKQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ IA++RDES R+G R+V+ELK+ A A+ IL L++ T Sbjct: 263 PYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKKDADANGILAYLFKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P++ L +L A++ + EVV RT++ L KA DRAHVL GL Sbjct: 323 DLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVTHRTQFELEKAEDRAHVLEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDEV+ I+ S N + A+ L W +E Sbjct: 383 KALNILDEVIAAIKASKNRQDAQNNL---QW-----------------------MFGFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q +IL L+L RLT L ++ EL+ L +I+ IL S +L+G+I++EL+ ++++ Sbjct: 417 RQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREK 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + + + E + ED++VT+S+ GY+KR S+ R GG+ S Sbjct: 477 YGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRT--SMLSFTRSGGELESSG 534 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 V ++ D++T LF V+T ++L F+S G + V ++P + G A++N++ + + + Sbjct: 535 V-KEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDH 593 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689 I +++P + + +L VF ++ G V+R L +++ A K+ + D I+ V Sbjct: 594 IVSVIPVSNFDEAGKSL--VFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVM 651 Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749 DI+L +K G +RF + GR S GVRGI L GD+V++ V Sbjct: 652 SDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLRDGDEVVAALWV-------- 702 Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809 +ND EG ILT+++ G+G Sbjct: 703 --------------------------END---EGE---------------ILTITDLGYG 718 Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIRV 865 KR+ D+ +R GKG+ + + + A+V F + QI S+ G + Sbjct: 719 KRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPI 778 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906 ++ I R + G ++ K+ ++V + + +E+ E Sbjct: 779 HTEKVPIMERKSIGKLLADVGKNGQIVDLVSLPHAELGKEG 819 >gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208] gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3] Length = 807 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 309/877 (35%), Positives = 477/877 (54%), Gaps = 98/877 (11%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I++PD Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LM++I+GPDFPTG +I G GI+ AY TG+G I+IRG + +E G REQIV+TEI Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVV+ELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ+ ++ NMVA++ +P +L IL A+++ ++EVV R+ + L KA++R H++ GL Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ +IR S + + A++ L+ + +E Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNLISK--------------------------FSFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +I+E ILS +LL +I L +K Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GYVKR + A G Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ + NI ++++ E Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + Y++F TK+G V+R +++ + + R K +A+ L DE++ V Sbjct: 592 IVKAIPVKEFNPAS---YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELVDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + + T LG + F + V R + GV+GI+L GD V+S I+ D+ Sbjct: 648 HVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDTVVSGQILHETDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 ++ V+++G Sbjct: 706 ----------------------------------------------------LVLVTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR + +F ++R+ +G+ K N +V VF D I ++KG I V Sbjct: 714 AIKRMNLSEFEKTSRAKRGVIMLRELKKNP-HRVVGVFACALADTIAAETEKGERIETTV 772 Query: 868 NEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902 +R R + G F T +DE V V RI S++ Sbjct: 773 KSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807 >gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426] gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426] Length = 814 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 308/884 (34%), Positives = 472/884 (53%), Gaps = 93/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A Sbjct: 5 LLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPFRKAA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E GN GS+DGDPPAA RYTE RL Sbjct: 65 KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TV F PN+D + EP VL A +PN+LVNG GI+ G AT+IP H L Sbjct: 125 SAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ID PD +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR + Sbjct: 185 GEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAA 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G ++ IV+TE+PY+VNKA +++KI EL +K++ IAD+RDE+DR G +VIELK Sbjct: 245 IEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A A+ ILN LY+ T LQ +S NMVA++ +P+ +L +L A++A R+EVV R+ + Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRSHF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +R H++ GL A++ LDEV+ IR S + A+ LM Sbjct: 365 ELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYG------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E Q AI+ L+L RLT +R E L I E IL+ Sbjct: 412 -------------FTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEK 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +LLG+IK+EL ++K + RRT I E + L ++ E I ED++VTV+ GYVKR Sbjct: 459 KLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSY 518 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y A G M++ D + ++T +L F+ G+ V LP + Sbjct: 519 RSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKE 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ + +++ L + + + +P SS+N +VF TK G V+R +L+ + Q+ R Sbjct: 574 VGQHISHLIPLERDDELVAAVPV----SSFNTGEQLVFVTKQGLVKRTELAQY-QVQRYT 628 Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 + +A+ + D++++V + L T G + F I G + GV+GI L Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEIS-LVGVRAAGVKGIQLK 687 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V + V RL G + Sbjct: 688 EGDFVAAACPV---------------------RLEEGSS--------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + V+++G K+ + +F S+R+ +G+ K N + AVF +D Sbjct: 706 ---------FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGAVFVSSDE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + + L ++KG + + +R++ R + G + T + VV V Sbjct: 757 EMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGPVVDV 800 >gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 448 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 241/470 (51%), Positives = 334/470 (71%), Gaps = 26/470 (5%) Query: 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67 SD +++ I ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M +G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 68 NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127 +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD AA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTE R+ K + L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TNIP H LGEV+DG +A+ NPDI + LME I GPDFPT +ILGR+GI+ AY TGRGS Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 242 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307 I++R IE+ S ++ I+VTE+PYQVNKA ++EKIAELVR+K+I I DLRDESDR G Sbjct: 243 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 302 Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367 R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L +P+ L L ++ ++ Sbjct: 303 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 362 Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427 V+ RRT Y L KA RAH+L GL IA+ +LDEV+ +IR S + A++ LM+R Sbjct: 363 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFG----- 417 Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 LSE Q +AIL++RL RLTGL R+ I + Sbjct: 418 ---------------------LSEKQAQAILDMRLQRLTGLEREKIEQNI 446 >gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3] gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3] Length = 825 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 293/737 (39%), Positives = 437/737 (59%), Gaps = 48/737 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++S+ M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A Sbjct: 6 IETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR L+E GN GS+DGDP AA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTV+ N+D + +EP VL AR PN+LVNG GI+ G AT IPTHNL Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + +I +PD L+ LME I GPDFPTG ++ G GIK AY TGRG IV+R + Sbjct: 186 GEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGADGIKKAYQTGRGRIVVRAKTE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G R+QI VTEIPY+VNKA ++++I +L K++ I + RDE+DR G R+ IELK Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R A+A+ ILN L + T LQ ++ NMVA++ +P R L IL +++AF++EVV RRT Y Sbjct: 306 RNANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKHILTSYLAFQKEVVRRRTSY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L+KA+ R H++ GL A++ LD+V++ IR S N + A++ +LID Sbjct: 366 NLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQ----------------NLID 409 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++T +VQ AI+ L+L RLT ++ +E L I E ILS Sbjct: 410 QYAFT----------DVQAEAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDE 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++++E+ +VK E PRRT+I + L+++ + + ED+VV VSH GY+KR + Sbjct: 460 ELSKVVRREMQAVKKEFGNPRRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT--SVLFFSSLGFVYKEKVWRLPIGSP 611 ++A G +R++D+ L I T+T + F++ G V V L Sbjct: 520 RSFKASSLDEDG-----LREDDY--PLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRW 572 Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670 + G+ + + L + E I M F + + + +F T G V+++ D+ +R Sbjct: 573 KDTGEHISQTIGLAEDEEIIKAMVFDKLDLPGS---FIFGTSDGQVKQSAYKDYQPGSRY 629 Query: 671 --SGKIAMKLDSRDE-ILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGV 724 +A+KL S+D ++SV+ T EN LL ++ G VRF ++ + V G + GV Sbjct: 630 KSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPV-TGLRTAGV 688 Query: 725 RGISLAKGDQVISMAIV 741 R I+L D ++ + +V Sbjct: 689 RAINLKDDDALVDLVLV 705 Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +L +S +G+ R D ++ G+RA + + + ALV + V D ++ ++ + Sbjct: 661 LLAISREGYAVRFDVADVPVTGLRTAGVRAIN---LKDDDALVDLVLVKDGQRVASITQR 717 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887 G +P++EI + +RA +G ++ K Sbjct: 718 GAFKEMPIDEIAVGARARRGELVLHRLK 745 >gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61] gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3] gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52] gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61] gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3] gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52] Length = 814 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 307/884 (34%), Positives = 472/884 (53%), Gaps = 93/884 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A Sbjct: 5 LLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPFRKAA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E GN GS+DGDPPAA RYTE RL Sbjct: 65 KTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TV F PN+D + EP VL A +PN+LVNG GI+ G AT+IP H L Sbjct: 125 SAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ID PD +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR + Sbjct: 185 GEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAA 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G ++ IV+TE+PY+VNKA +++KI EL +K++ IAD+RDE+DR G +VIELK Sbjct: 245 IEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A A+ ILN LY+ T LQ +S NMVA++ +P+ +L +L A++A R+EVV R+ + Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRSHF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA +R H++ GL A++ LDEV+ IR S + A+ LM Sbjct: 365 ELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMAHYG------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E Q AI+ L+L RLT +R E L I E IL+ Sbjct: 412 -------------FTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILADEK 458 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 +LLG+IK+EL ++K + RRT I E + L ++ E I ED++VTV+ GYVKR Sbjct: 459 KLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRTSY 518 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y A G M++ D + ++T +L F+ G+ V LP + Sbjct: 519 RSYSASNGQDMG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWKE 573 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ + +++ L + + + +P SS+N ++F TK G V+R +L+ + Q+ R Sbjct: 574 VGQHISHLIPLERDDELVAAVPV----SSFNTGEQLIFVTKQGLVKRTELAQY-QVQRYT 628 Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 + +A+ + D++++V + L T G + F I G + GV+GI L Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEIS-LVGVRAAGVKGIQLK 687 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V + V RL G + Sbjct: 688 EGDFVAAACPV---------------------RLEEGGS--------------------- 705 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + V+++G K+ + +F S+R+ +G+ K N + AVF +D Sbjct: 706 ---------FVVVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPHRVVGAVFVSSDE 756 Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + + L ++KG + + +R++ R + G + T + VV V Sbjct: 757 EMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGMVVDV 800 >gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125] gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125] Length = 816 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/884 (34%), Positives = 494/884 (55%), Gaps = 101/884 (11%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M + G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++YDA+ RM+Q+W +R +L++ GN GS+DGDPPAA RYTE RL K A LL D+ K+TV Sbjct: 83 SVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYTEARLSKIAAELLRDIDKETV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 D+ PN+D S QEPVVL A++PN+LVNG GI+ G AT+IP H+LGEV+DG + ++NP++ Sbjct: 143 DYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIPPHHLGEVIDGVIMQMENPNV 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 LD LM++I+GPDFPTG ++ G GI+ AY+TG+G +V+RG + IE G ++QIV+TEI Sbjct: 203 TLDELMQVIKGPDFPTGGIVQGIEGIRQAYSTGKGKVVVRGKAEIEDLRGGKQQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+V KA +++K+ E+ +K++ IA++RD++DR G R+V+ELK+ A A+ IL L++ T Sbjct: 263 PYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIVVELKKDADANGILQYLFKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ P L +++A++ +++V++RR Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIRRATYDLQKAKDRQHIVQGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LD+V++ IR S + + A+ L+ + +E Sbjct: 383 KAISILDDVIQTIRASKDKKNAKDNLIAQ--------------------------FDFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT + E L I E IL+S +L+G++K+ELL++K + Sbjct: 417 AQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAILASEKKLIGVVKKELLAIKKQ 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RRT I + + +++ + + ED++VTV+ GYVKR L Y A G Sbjct: 477 FTDERRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVKRTSLRSYAASNGELPG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M++ D++ + ++T ++L F+ G V +LP + G+ + N++++++ + Sbjct: 533 -MKEGDYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDIRWKDNGQHVANLVTVDKDDD 591 Query: 630 ITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEI 684 I T + F E+ES ++F T+ G +R++LS + R K +A+KL DE+ Sbjct: 592 ILTTLAVKEFSEEES------LLFITRQGMAKRSQLS-LYKAQRFSKPLMALKLKDDDEV 644 Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744 +SV + ++ + T G + F + I G+ + GV+GI+L D V+ Sbjct: 645 VSVMRTSGNEEVFIATSFGYGLWFSENEISQ-VGQRAAGVKGINLKNDDAVV-------- 695 Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804 + T+ + VE L V+ Sbjct: 696 --------------------------DATTFTLNDRVE-----------------FLVVT 712 Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLI 863 +G KR S +F S R+ +G+ K N +VA ++D +D + ++ GT++ Sbjct: 713 HRGGVKRISITEFDKSTRAKRGLVMLRELKKNP-HHIVACKRISDGSDTFFIKTEDGTIV 771 Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907 V + R + R + G + K V +V +E ++D+ E Sbjct: 772 TVAPSSFRRSDRYSNGSFVLDQDKTGVVTNV--WKEVSLIDDKE 813 >gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2] gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2] Length = 808 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 302/874 (34%), Positives = 470/874 (53%), Gaps = 92/874 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAFRKSAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ R++QDW +R +L+E GN GS+DGD PAA RYTE RL + LL D+ K TV Sbjct: 83 SVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYTEARLSAISSELLRDIDKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 DF PN+D S EP VL AR+PN+LVNG GI+ G AT+IP H L EV+D + +DNP Sbjct: 143 DFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIPPHALHEVLDAVLMRMDNPQA 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 + LM +I+GPDFPTG +I G GIK AY TG+G I++R + IE G +EQIV+TEI Sbjct: 203 TVAELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSKAEIEPLKGGKEQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA M++KI + ++++ I+++RDESDR G R+VIELK+ A IL+ LY+ T Sbjct: 263 PFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIVIELKKDVQAQGILSYLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ +P TL +L A++ ++EV+ +R+++ L KA DR H++ GL Sbjct: 323 DLQVSYNFNMVAIYKRRPTMMTLQTMLDAYIEHQKEVITKRSEFDLQKASDRMHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LD+V++ IR S + A+ L+ SE Sbjct: 383 KALSILDKVIKTIRSSTDKRDAKNNLI--------------------------AAFDFSE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT D++ E +SL I E IL+S ++L +IK+EL +++ + Sbjct: 417 AQAEAIVSLQLYRLTNTDITDLQKEEDSLKKTIAELTGILTSSTKLKNVIKKELANIRKQ 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 PRR+ I + + + + E I E++VVTV+ GYVKR Y A GK Sbjct: 477 FAEPRRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVKRTSTRSYAAS--NGK---DF 531 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M++ D + ++T ++L F++ G + + LP + G+ L +I+ L+ E Sbjct: 532 AMKETDHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDIKWKDLGQHLSSIIQLDANES 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI--AMKLDSRDEILSV 687 + + PF ++ + L V +K G V+R+ L D+ QI R + M L S D ++ Sbjct: 592 VLAVYPFENFDADASILTV---SKLGQVKRSALKDY-QIQRYSRTVKTMNLKSGDAMIYA 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 T+E ++ + T VRFP+ + + G + GV+G++L D+ +S ++ D + Sbjct: 648 GLVTKETELFIGTNQAYGVRFPLEEVPL-TGLRTGGVKGVNLKGDDEAVSAILI---DPE 703 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 + + + H A +++KL E Sbjct: 704 VKQELVLVTHRGA-----------------------------AKKMKLDE---------- 724 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 F +R+ +G+ K N +VAV ++IIL + KG I + Sbjct: 725 ---------FESGSRAKRGVVMLRELKSNP-HRVVAVIGATGKEEIILETAKGLRIPLVA 774 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901 N ++ R + G I + D +VV+ R+ E Sbjct: 775 NSLKNVDRYSNGSFIADESSDGKVVAAYRLNTKE 808 >gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802] gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802] Length = 843 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 291/771 (37%), Positives = 448/771 (58%), Gaps = 74/771 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 13 IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A +L D+ + VDF N+D S QEPVVL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG VA+ID+P++ + L ++I GPDFPTG I+ + GI+ AYATGRG I +RG++ Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252 Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE K +R IVVTE+PYQVNKAA +EK+A+LV + R+ IAD+RDESDR G Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A+V+L LY+ T+LQS F ++AL KP + +L +L+ F+ FRE+ Sbjct: 313 RVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ + L +A+ R H+L GL IA+ NLD ++ I+R NA+ Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILR-----------------NAA--- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 D ++ + + +S+ Q AIL + + RLTGL + +++E + L I+E Sbjct: 413 ------DGTTAKMRFQAELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEELQ 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE----------GLLDMEDEDCIVREDM 538 +LS R LL +K++L S+K + PRRTRIV+ + E+ +++ Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKEE 526 Query: 539 VVTVSHLGY---VKRVP-LSVYRAQRR--------GGKGRSGVVMRD---EDFVTDLFIV 583 + T S ++ P L+++ Q +G + + D +D I+ Sbjct: 527 LPTTSSPKTEESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFRAII 586 Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFP 637 + ++ + +G Y V +P + Q+ I +LSL R+ P Sbjct: 587 GQKSELMVITDVGKAYPIAVAEIPPLTLQS-----IPLLSLLPKGAQKDANRVIDAGFVP 641 Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697 D ++ ++ T+ G ++R K+S+ + G + +KL D + V + +++ Sbjct: 642 NDPHGYD---LLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVV 698 Query: 698 LTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + G+ +R+P++ + GR++ G + + L G++V++ + LH+ + Sbjct: 699 IAISGGRILRYPVTDEVIPLMGRSAQGNQALKLRYGEEVVN-CVTLHSQGE 748 >gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631] gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631] Length = 738 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 312/861 (36%), Positives = 467/861 (54%), Gaps = 145/861 (16%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80 I +E++++YL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+ +K +VKCAR+ G Sbjct: 9 IAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVGH 68 Query: 81 VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140 V+G YHPHG+A +Y+AL RMAQD+S+R LI+GQGNFGS+DGD PAA RYTECRL + A Sbjct: 69 VLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIAE 128 Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200 +L+D+ K+TVDF+PN+D S QEPVVL A+ PN+L+NG GIAVGM TNIP HN+ EV D Sbjct: 129 KMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVCD 188 Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260 G +A I NP+I ++ LM I+GPDFPTG VI+GR GI AY TG+G I++RG +E+ Sbjct: 189 GIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKVDVEE-- 246 Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320 ++I++ EIPY VNKA ++EKIA+L+++ +++ +RDESDR+G RVVIELK + Sbjct: 247 ---DKIIIREIPYMVNKAKLVEKIADLIKKDKLL-AKTVRDESDREGIRVVIELKEDPYS 302 Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380 L +LY +T L+ F+V M+AL +P+ L ++ +V R EVV R+ +Y L KA Sbjct: 303 --ALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKA 360 Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440 +R H++ GL A+ LDEV+ +I+ S + + A+ LM+ Sbjct: 361 EERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK--------------------- 399 Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500 + ++E Q AIL+LRL LT L + + E N L I E IL+ R+ I Sbjct: 400 -----LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRIDELKSILADPKRVDEI 454 Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560 I +EL VK + RRT I++ + E V E+ V V+ G +KR + +A R Sbjct: 455 IVEELREVKRKFGDNRRTEIIDKEILKE-----VVEEFGVAVTLDGQIKR--FEIGKALR 507 Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL-- 618 K +++R ++ +L FSS +K + S AR L Sbjct: 508 SNPK----ILLR----------AMSNLDILLFSS------DKAY-----SIHARDIPLDF 542 Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678 + E++ T + D VV +K GN+++ +L +F R+G IA Sbjct: 543 TPLSKFISAEKVETGVVAKGD--------VVILSKDGNIKKVRLEEFANAKRAGIIA--- 591 Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738 E + ++ D+++ TK G VRF S I + GR++ GV+ I+L +GD++ M Sbjct: 592 ---GENIGFARLYEDGDVIIATKNGYIVRFRSSEIPEY-GRSAKGVKAITLREGDEIAWM 647 Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798 +I DY Sbjct: 648 SI---GKGDY-------------------------------------------------- 654 Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858 +L ++ G+ K+ +FR++NR G+R + +AV + ++ + Sbjct: 655 -VLILTRDGYAKKVPIDEFRLTNRGAMGVRG--------VRGEIAVAEIVSEEEYYAYTS 705 Query: 859 KGTLIRVPVNEIRIASRATKG 879 +G +R+ V I R KG Sbjct: 706 EGNAVRINVKRIPKGDRYKKG 726 >gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 441 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/465 (52%), Positives = 331/465 (71%), Gaps = 26/465 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV +K + Sbjct: 2 QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD AA+RYT Sbjct: 62 KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYT 121 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E R+ K A +L D+ K+TVDF NYD + +EP+VL AR+PN+LVNG GIAVGMATNIP Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGE +D V+DNP++ LME++ GPDFPTGA+++G++GI AY TG+GSIV+R Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE T RE+IVVTE PY VNK + E I LV+EKRI I +RDES+R+G R V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IE+KR ASA+VILN L++ T +Q+ F NM+A+ P+ +L IL A++ ++EVVVR Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT++ KA RAH+L GL IA+ ++DEV+RIIR S A+ ELM + Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476 LSE Q++AIL++RL RLTGL RD I++E Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSE 440 >gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM 7] Length = 807 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 308/877 (35%), Positives = 476/877 (54%), Gaps = 98/877 (11%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSSIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I++PD Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIESPDC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LM++I+GPDFPTG +I G GI+ AY TG+G I+IRG + +E G REQIV+TEI Sbjct: 203 TVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEVEAVRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVV+ELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVVVELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ+ ++ NMVA++ +P +L IL A+++ ++EVV R+ + L KA++R H++ GL Sbjct: 323 DLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTNRSVFELQKAKERHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ +IR S + + A++ L+ + +E Sbjct: 383 KALSVLDEVIAVIRASSDKKDAKQNLISK--------------------------FSFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +I+E ILS +LL +I L +K Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAILSHDKKLLKVITSSLKKLKKT 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GYVKR + A G Sbjct: 477 YADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ + NI ++++ E Sbjct: 533 -MKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHVTNITTIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I + E + Y++F TK+G V+R +++ + + R K +A+ L DE++ V Sbjct: 592 IVKAISVKEFNPAS---YLLFMTKNGMVKRTEMTHY-KAQRYSKALVALNLKGDDELVDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + + T LG + F + V R + GV+GI+L GD V+S I+ D+ Sbjct: 648 HVTDGGCQLFIATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKDGDTVVSGQILHETDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 ++ V+++G Sbjct: 706 ----------------------------------------------------LVLVTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR + +F ++R+ +G+ K N +V VF D I ++KG I V Sbjct: 714 AIKRMNLSEFEKTSRAKRGVIMLRELKKNP-HRVVGVFACALADTIAAETEKGERIETTV 772 Query: 868 NEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902 +R R + G F T +DE V V RI S++ Sbjct: 773 KSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807 >gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO] Length = 764 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 286/780 (36%), Positives = 462/780 (59%), Gaps = 47/780 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 2 ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + +L D+ K+TVD N+D + +EP VL ARYPN+LVNG GI+ G AT I Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P L+ LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G+++QIV+TEIPY+VNKA +++K+ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P + L IL++++ R++V+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ K+L Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAK-------------KNL 408 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ +E Q AI+ L+L RLT +++ E SL +I E I Sbjct: 409 VDVFQ-------------FTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548 LS+ L ++K+EL VK + R T + ++ + + +ED++V+V+ GYV Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G MR+ D++ +ST VL ++ V V LP Sbjct: 516 KRTSLRSYSASKPEEIG-----MREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570 Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665 + G+ + +S L+ E I + P+ + ++ VF +K+G +++ ++++F Sbjct: 571 LKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKT---FVFISKNGLIKQTRMTEFEP 627 Query: 666 IQINRSGKIA-MKLDS-RDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNS 721 + +S ++ MKL + DE+++V + D+ L T G +R+P++ + V G + Sbjct: 628 WRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPV-VGAKA 686 Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781 GV+ ++L GD++I+ +VL A+ D I + A +R+++ + + + K +V Sbjct: 687 AGVKSMNLKDGDRIINGLLVL---AEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRGVTV 743 >gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] Length = 817 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 300/754 (39%), Positives = 430/754 (57%), Gaps = 72/754 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ EE+ I + + DEMQ SYL YA +VI RA+PD RDGLKPVHRRIL+ M +MG+ Sbjct: 12 DDFEER-ILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPE 70 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+ + DPPAA Sbjct: 71 RGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAA 130 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ A+ + + + ++TVDF PNYDGS QEPV L A YPN+LVNG GIAVGMA Sbjct: 131 MRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMA 190 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNLGEV+ +I +P DLD LM + GPD PTG I+G +G+++AY TGRG+ Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIVGMSGVRDAYETGRGT 250 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306 IR +E + R+ +VVTE+P+ V ++ KI +LV K++ IAD++D +DR+ Sbjct: 251 FKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLTDREH 310 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + + +L QLY+ T ++ F +N VAL +P L +L+ ++ R Sbjct: 311 GLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RR+++ K R+R H++ GL +A+ ++DEV+R+IR S N A+R L+QR Sbjct: 371 NVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQR------ 424 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSEVQT+ IL+ L RLT R ++ +E + L EI+E Sbjct: 425 --------------------FGLSEVQTQYILDTPLRRLTKFDRLELESERDRLNTEIEE 464 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538 IL S + L ++ EL +V + TPRRT ++E L++ D+ C Sbjct: 465 LTRILDSDAELRKLVSGELAAVAKKFGTPRRTVLLESSNAPVTAVPLEVADDPC------ 518 Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V +S G + R P V +R D + + SV +S Sbjct: 519 RVLLSSTGLLARTADGEPFPVEGKAKRA----------KHDVILSAVPATARGSVGAVTS 568 Query: 595 LGFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYV 648 G + + V LP+ G P G A I LSL +GE + + DESS + Sbjct: 569 TGRLLRLTVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTL--DESSPG---L 623 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707 T+ G V+R + D+ N+ + L D I+ +VE T E D++ T Q +R Sbjct: 624 AIGTEQGVVKR-VVPDY-PANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLR 681 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 + S +R GR + G+ G+ LA G +VIS V Sbjct: 682 YAASQVRP-QGRAAGGMAGVKLASGAKVISFTAV 714 >gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801] gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801] Length = 835 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 290/762 (38%), Positives = 440/762 (57%), Gaps = 64/762 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 13 IIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL R+ QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A +L D+ + VDF N+D S QEPVVL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 ASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG VA+ID+P++ + L ++I GPDFPTG I+ + GI+ AYATGRG I +RG++ Sbjct: 193 LGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGIT 252 Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE K +R IVVTE+PYQVNKAA +EK+A+LV + R+ IAD+RDESDR G Sbjct: 253 RIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A+ +L LY+ T+LQS F ++AL KP + +L +L+ F+ FRE+ Sbjct: 313 RVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ + L +A+ R H+L GL IA+ NLD ++ I+R NA+ Sbjct: 373 LTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILR-----------------NAA--- 412 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 D ++ + + +S+ Q AIL + + RLTGL R +++E + L I+E Sbjct: 413 ------DGTTAKMRFQAELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQ 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLG 546 +LS R LL +K++L S+K + PRRTRIV+ + + +E+ T+S Sbjct: 467 TLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPNVKKEEPPTTLSPKT 526 Query: 547 --YVKRVP-LSVYRAQRR--------GGKGRSGVVMRD---EDFVTDLFIVSTHTSVLFF 592 ++ P L+++ Q +G + + D +D I+ + ++ Sbjct: 527 EESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVI 586 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFPEDESSWNNL 646 + G Y V +P + QA I +LSL R+ P D ++ Sbjct: 587 TDAGKAYPVAVAEIPPLTLQA-----IPLLSLLPKGAQRDANRVIDAGFVPNDPHGYD-- 639 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706 ++ T+ G ++R K+S+ + G + +KL D + V + ++ + G+ + Sbjct: 640 -LLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRIL 698 Query: 707 RFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 R+P++ + GR++ G + + L + + + LH+ + Sbjct: 699 RYPVTDEVIPLMGRSAQGNQALKLRNVGETVVNCLTLHSQGE 740 >gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2] gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2] Length = 817 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 298/870 (34%), Positives = 461/870 (52%), Gaps = 92/870 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RAIPD+RDGLKPV RRIL+ M +K Y K A+ G+VMG YHPHG++ Sbjct: 23 YSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGDVMGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IY+ + RMAQ W + +LI+G GN+GS+D DP AA RYTE RL A +L D+ K TV Sbjct: 83 SIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAMEILRDIDKRTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F+ N+D + +EPVVL +RYPN+LVNG GI+ G AT IP H+L E +D C+AV+ P++ Sbjct: 143 QFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETIDACIAVMARPEM 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 ++ LM I++GPDFPTG +I+G GI+ AY TG+G I IR IE G R+QI +TEI Sbjct: 203 TVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIRSKVEIEDVRGGRQQITITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PYQV K+ ++ + + EK++ I+++RDES R G R+V+ELK+ A A+ IL L + T Sbjct: 263 PYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKKEADANGILAYLLKKT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA+ P++ + IL A++ ++EVV RT+Y L KA +RAHV+ GL Sbjct: 323 DLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQYELEKAEERAHVVEGLV 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A+ LDEV+ I+ S N A+ L+ + SE Sbjct: 383 KALNILDEVIATIKASKNRADAQNNLVAKYG--------------------------FSE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AIL L+L RLT L + E +I IL S +LLG+IK EL ++++ Sbjct: 417 RQADAILTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREK 476 Query: 512 LDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568 RR+ I VE L + E + ED++VT+S GY+KR S+ R GG ++ Sbjct: 477 YGIDRRSSIRGEVEE-LKVNLEVMVQSEDVIVTLSEEGYMKRT--SMLSFTRSGGDLQTA 533 Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628 V ++ D ++ ++ V+T ++L F+ G Y V ++P + G A++NI+ + + + Sbjct: 534 GV-KEGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDD 592 Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 I I+P + +L VF TK V+R +L +++ + A K+ DE++ V Sbjct: 593 SIVAIIPVKDFNLPGASL--VFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIRVT 650 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748 +LL +KLG +RF + GR + GVRG+ L + D++I+ V + + Sbjct: 651 LSEGTKQLLLVSKLGMSIRFSEQEVNAM-GRVAAGVRGMQLREDDELIAAEWVADDEGE- 708 Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808 +L V++ G+ Sbjct: 709 ---------------------------------------------------VLVVTDLGY 717 Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEI----GALVAVFPVNDNDQIILVSDKGTLIR 864 KRT D+ + R GKG++ + + + ALVA + II ++ +G + Sbjct: 718 AKRTLLLDYPLQGRGGKGVQTFEFKEGKRVKPNGSALVAALYCKEELGIIALTSQGAQLA 777 Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSV 894 + I R + G ++ K++ + ++ Sbjct: 778 ASSEKAPIEDRKSIGRILLPMEKNDVITTI 807 >gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046] Length = 809 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/760 (36%), Positives = 433/760 (56%), Gaps = 61/760 (8%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M + + Y+ +I RA+PD RDGLKPV RRI++ M G ++K + K A+ G V+G Sbjct: 16 MGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRKSAKTVGNVIGN 75 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG+ ++YDA+ RM+QDW R +L+E GN GSVDGDPPAA RYTE RL A LL Sbjct: 76 YHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEARLSAIAAELLR 135 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ K+TV+F PN+D EP VL +R+PN+LVNG GI+ G AT+IP HNL E +D + Sbjct: 136 DINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPHNLQEALDAVLM 195 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +DN +D LM +I+GPDFPTG +I G GIK AY TG+G I++R + IE+ G++E Sbjct: 196 RLDNKSCTVDELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSRTEIEQLKGNKE 255 Query: 265 QIVVTEIPYQVNKAAMLEKIAEL-VREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 QI++TEIP++VNKA M+ K+ EL V ++R+ I+++RDESDR G R+V+ELK+ A I Sbjct: 256 QIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIVVELKKDVPAQGI 315 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN L + T LQ ++ NM+A++ +P TL +L A++ ++E+V RR++Y L +A DR Sbjct: 316 LNFLLKSTDLQVSYNFNMIAIHNRRPMMMTLPLMLDAYIDHQKEIVRRRSQYDLTRAEDR 375 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 H++ GL A++ LDEV+ IR S + A+ ++++ Sbjct: 376 LHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEK----------------------- 412 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 SE Q AI+ L+L RLT ++ E + L + + IL +L+ +IK Sbjct: 413 ---FGFSEEQAEAIVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILEDEKKLIRVIKS 469 Query: 504 ELLSVKDELDTPRRTRIVEGLLDME-DEDCIV-REDMVVTVSHLGYVKRVPLSVYRAQRR 561 EL +K PR + I + +++ D +V E++VVTV+ GYVKR L + A Sbjct: 470 ELNDIKKRFTLPRLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKRTSLRSHSAS-- 527 Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621 GK M+D D++ ++T +L F++ G + V L P R K L Sbjct: 528 NGK---DFAMKDSDYLLYEANLNTQHHLLLFTNKGHYIYQPVHEL----PDIRWKDL--- 577 Query: 622 LSLNQGERITTIMPFPEDES----------SWNNLYVVFATKHGNVRRNKLSDFIQINRS 671 G+ I++I+P +E N+YV ATK G ++R+ L+D+I S Sbjct: 578 -----GQHISSIVPIDSNEEIIEVIGIETFEQPNMYVFTATKEGQIKRSALADYIVTRYS 632 Query: 672 GKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 I M L DE++ T + ++LL+T +RFP+ + V G + GV+GI + Sbjct: 633 KPIKTMNLKGEDEMIFARLVTDKEEVLLSTNTSYTIRFPMEDLPV-TGVKTAGVKGIIVK 691 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770 +G+ + ++A++ D ++ + + A +R++ + E Sbjct: 692 EGEYLAAVALL---KPDQEQELVIVTQRGAVKRMLLSELE 728 >gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831] gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831] Length = 816 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/709 (39%), Positives = 421/709 (59%), Gaps = 37/709 (5%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M +K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKHFRKSAKTVGTVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++YDA+ R++QDW +R LIE GN GS+DGDPPAA RYTE RL + LL D+ K TV Sbjct: 83 SVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRYTEARLSSISAELLRDIDKQTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 D+ PN+D + EPVVL A++PN+LVNG GI+ G AT+IP HNL EV+D + ID P+ Sbjct: 143 DYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDIPPHNLEEVMDAVILKIDKPEA 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LM++++GPDFPTG +I G GI+ AY TGRG I++RG + +E G REQIVVTE+ Sbjct: 203 SIDDLMKLMKGPDFPTGGIIQGVEGIRKAYETGRGKIIVRGKAVVETMKGGREQIVVTEV 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA M++K+ EL ++++ IA++RDE+DR G RVVIELK+ A+++ +LN LY+ T Sbjct: 263 PFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRVVIELKKDANSEGVLNYLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ + NMVA+ P+ +L +L A++A ++EVV R+ Y LNKA RAH++ GL Sbjct: 323 DLQITYHFNMVAIQDKTPKLLSLPSLLDAYIAHQKEVVTRQITYDLNKANARAHIVEGLI 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDE++ IR S + A+ ++ + +E Sbjct: 383 KAISILDELIATIRASKDKGDAKAQIKAKYG--------------------------FTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +IKE ILSS +L IK+EL +K + Sbjct: 417 EQAEAIVMLQLYRLTNTDIVELEKEAAELKEKIKEYESILSSDKKLFQTIKKELRQIKKK 476 Query: 512 LDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 PRRT I E + L + E + ED++V+V+ GY+KR L Y A + Sbjct: 477 FADPRRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYLKRTSLRSYAAS-----NEEEL 531 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 ++D+D+ L V+T ++L F++ G V LP + G+ + NI+ L++ E Sbjct: 532 PVKDDDYPISLLEVNTTDNLLLFTNKGKYILCPVHELPDIRWKDMGQHISNIVPLDKEEY 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSVE 688 + MP + +S+ Y++F TK+G V+R++ + RS IA+ L DE++ V Sbjct: 592 LIQCMPVRDFKSAEG--YLIFFTKNGMVKRSEFQLYDAQRRSKALIALNLKGDDEVVHVS 649 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737 D+ + T G + + S I V G+ + GV+ +SL D+V++ Sbjct: 650 HTNGNMDVFIATYKGYGLWYHESEISV-VGQRAAGVKSVSLKDDDEVVN 697 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 17/134 (12%) Query: 746 ADYDERIC-YMKHMSAQRRLISGDTEEITSLKND-SSVEGNISEERCQELKLK------- 796 A+ E+I Y +S+ ++L +E+ +K + + EE+ +ELK+ Sbjct: 443 AELKEKIKEYESILSSDKKLFQTIKKELRQIKKKFADPRRTVIEEKIEELKINIEVTVAS 502 Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +++V+ G+ KRTS + SN ++ D +++ VN D ++L Sbjct: 503 EDVLVSVTRDGYLKRTSLRSYAASNEEELPVKDDDYP--------ISLLEVNTTDNLLLF 554 Query: 857 SDKGTLIRVPVNEI 870 ++KG I PV+E+ Sbjct: 555 TNKGKYILCPVHEL 568 >gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402] gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402] Length = 803 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 272/742 (36%), Positives = 437/742 (58%), Gaps = 60/742 (8%) Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73 + I S+ + D + + + Y+ +I RAIPD+RDGLKPV RRILF M G ++K Y K Sbjct: 3 ENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNYRK 62 Query: 74 CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133 A+ G V+G YHPHG+ ++YDA+ RM+QDW LR +L+E GN GS+D DPPAA RYTE Sbjct: 63 SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122 Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193 +L K A+ LL+D+ K+TVDF N+D + EP+VL A YPN+LVNG GI+ G AT+IP H Sbjct: 123 KLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIPPH 182 Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 NL EV++ + VID P+I D +M+++ GPDFPTG +I+G++GIK AY TGRG I +RG Sbjct: 183 NLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIMGKSGIKQAYETGRGKIQVRGK 242 Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313 IEK G RE+I+++EIP++VNK+ ++++I EL +K++ I ++RDE+DR G R+ IE Sbjct: 243 VDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRIAIE 302 Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373 LK+ A+++ ILN LY+ T LQ ++ NMVA++ +P+ + +L +F++ ++EVV RR+ Sbjct: 303 LKKDANSEGILNFLYKNTDLQIAYNFNMVAISDRRPKLLGVRDMLNSFISHQKEVVTRRS 362 Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433 +Y + A R H++ GL A++ LD+V+++IR S N A+ L+ + Sbjct: 363 QYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHK------------- 409 Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 +E Q AI+ L+L RLT + E +L +K+ IL+ Sbjct: 410 -------------FNFTEAQAEAIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILND 456 Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551 + L +IK+EL +++ E R ++I E + +++ E + E+ V++++ GY+KR Sbjct: 457 ETHLKKVIKKELKAIQKEFKEERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKRT 516 Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS- 610 + A G + + M+++D +++ H S L +L F K + +P Sbjct: 517 SPRSFNAS-----GVTDIGMKEDD-----QLLAYHESNLQHITLVFTDKGRYMYIPNHQL 566 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDE--------SSWNN-LYVVFATKHGNVRRNK 661 P+ R K L G I+ I+P DE + +N+ + ++ AT++G ++ + Sbjct: 567 PEIRWKDL--------GTHISQIVPIDSDERVIHMITVTDFNSEVKILAATRNGMIKLSS 618 Query: 662 LSDFIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719 L DF ++ R + I MKL D + ++ T IL+ TK G + + ++ + G Sbjct: 619 LKDF-EVTRYSRPLINMKLKGNDVVNTIHVVTGSEHILVVTKQGMSLHYSLTELN-DTGL 676 Query: 720 NSVGVRGISLAKGDQVISMAIV 741 + GV+ I+L D VI+ I+ Sbjct: 677 KAAGVKSINLKDDDVVITTEII 698 >gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN] gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN] Length = 822 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 286/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 6 IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDP AA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ KDTV+ N+D + +EPVVL AR PN+ VNG GI+ G AT IPTHNL Sbjct: 126 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D + ++ +P LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R + Sbjct: 186 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G REQIVVTEIPY+VNKA ++++I +L K++ IAD RDE+DR G R+ IELK Sbjct: 246 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A +LN L + T LQ ++ NMVA+N +P R L L +++AF++EV+ RRT++ Sbjct: 306 RGVDAQGVLNYLLKNTDLQINYNFNMVAINDQRPVRVGLKHYLASYLAFQKEVITRRTRF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ R H++ GL A++ LD+V+ IR S N + A++ L+ Sbjct: 366 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 408 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y + Q AI+ L+L RLT + E L I+ IL+ Sbjct: 409 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+E+ ++K E PRRT+I + + L ++ + ED++V VS GY+KR + Sbjct: 460 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612 ++A G G +R++D+ L +T + + F++ G F+Y+ V L + Sbjct: 520 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 573 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670 G+ L + L+ E I M D+ + +FAT G V+++ LSD+ +R Sbjct: 574 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 630 Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +A+KL +++SV+ E +L ++ G +RF + + V G + GVR Sbjct: 631 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 689 Query: 727 ISLAKGDQVISMAIVLHADADY 748 I+L + DQ++ I L D D+ Sbjct: 690 INLKEDDQLV--GISLAGDGDH 709 >gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018] Length = 580 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 265/555 (47%), Positives = 353/555 (63%), Gaps = 32/555 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M G ++ Y KC+ Sbjct: 43 VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS DP AA RYTECR+ Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A ++ D+ KDTVDF PNYDG QEP VL AR+PN+LVNG GIAVGMATNIP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 196 GEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 EV DG +D+PD L+AL++ I+GPDFPTGA ILG GI+ AY TGRG I +R Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITMR 282 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRV 310 V + E+ G R +VVTE+PYQVN + I E VR+ +I IAD+RDE S R G R+ Sbjct: 283 AVVNTEEIKG-RMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQRL 341 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ LKR A V+LN LY+++ LQ F NM+AL P +L ++ +V+ + EV+ Sbjct: 342 VLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVID 401 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+YL +A +R H+L G A+ +DEVV +IR S + +TAR LM +L Sbjct: 402 RRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------NL 451 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +D+ D VQ AIL ++L RL L R I +E L +I++ DI Sbjct: 452 LDVDD----------------VQADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDI 495 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550 L+S R I+ EL + + RRTRI+ +M ED I E++VVTV+ GY+KR Sbjct: 496 LASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKR 555 Query: 551 VPLSVYRAQRRGGKG 565 YRAQ RGGKG Sbjct: 556 TKADEYRAQHRGGKG 570 Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 761 QRRLISGDTEEITSLKND---SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817 QR+++ + +EI + D + + E ++L +E ++TV+ G+ KRT + ++ Sbjct: 502 QRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIKRTKADEY 561 Query: 818 RISNRSGKGIRATDVSKI 835 R +R GKGI+A + K+ Sbjct: 562 RAQHRGGKGIKALNCVKM 579 >gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2] gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2] Length = 820 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/882 (34%), Positives = 481/882 (54%), Gaps = 99/882 (11%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M Q G ++K Sbjct: 2 EHKNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG +HPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ KDTV+ N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL EV+DG + +ID+P+ LD LME I GPDFPTG ++ G+ IK AY TGRG +++ Sbjct: 182 PTHNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGILQGKEEIKKAYETGRGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV+ EIPY+VNKA +++K+ E+ K+I IA++RDE+DR G ++ Sbjct: 242 RSKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ +P++ L IL+++V R EV+ Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMRPQQVGLKHILESYVKHRREVIA 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R++Y L KA+ R H++ GL A++ LDEV+ IR S + + A+ L+ + Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q AI+ L+L RLT ++ E L I+E I Sbjct: 414 ------------------FTEEQAEAIVTLQLYRLTNTDITQLQAEAQELAETIRELTKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 L+ + LL +IK+EL +K + + R T I + + +E + + +ED+VVTV+ GYV Sbjct: 456 LNEETELLKVIKKELREIKKKYHSDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G M++ D + ST +L ++ G V + LP Sbjct: 516 KRSSLRSYGASKPEELG-----MKEGDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + +++L E I + + E + N V +K+G +++ ++++F + Sbjct: 571 LKWKDLGEHISQTVMNLATEETILAVFTYQELDPQKN---FVLISKNGMIKQTRMTEF-E 626 Query: 668 INRSGK----IAMKL-DSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL D DE+++V Q D+ L + +R+P++ + V G Sbjct: 627 PWRTYKSRPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEVPV-VGPK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780 + GV+ ++L + DQ+++ +V Y E GDT Sbjct: 686 AAGVKAMNLKEDDQIVNGLLV------YSE----------------GDTP---------- 713 Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840 ++ V+++G KR + + R+ +G+ K N Sbjct: 714 -------------------VIMVTQRGAVKRMLAQEISQLGRAKRGLMVLRELKKNP--H 752 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 + +N +IL + KG +I + N+I I R + G + Sbjct: 753 RIVYMGSGENQSLILTTQKGQMIEIETNQIPINDRTSNGSFV 794 >gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5] gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5] Length = 806 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 307/871 (35%), Positives = 474/871 (54%), Gaps = 94/871 (10%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G ++K + K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+QDW +R +LIE GN GS+DGDPPAA RYTE RL A LL D+ K+TV Sbjct: 83 SVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIASELLRDIDKNTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 +F PN+D + +EPVVL A +PN+LVNG GI+ G AT+IP H+LGEV+D + I P Sbjct: 143 EFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVIDAVIKRIQMPSC 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME+I+GPDFPTG +I G GI+ AY TG+G I+IRG + IE G REQIV+TEI Sbjct: 203 SVDELMEVIKGPDFPTGGIIQGIDGIRKAYETGKGKIIIRGKAEIETIRGGREQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 P++VNKA +++K+ E +K++ I+++RDE+DR G RVVIELK+ A A ILN LY+ T Sbjct: 263 PFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEADAKGILNFLYKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ +P +L IL A++ ++EVV R+ Y L KA+DR H++ GL Sbjct: 323 DLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQKAKDRHHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 A++ LDEV+ IR S + A+ L+ + +E Sbjct: 383 KALSILDEVIATIRSSSDKRDAKNNLIAK--------------------------YEFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E LG +I+E ILS+ +LL +I L ++K + Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476 Query: 512 LDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 RR+ I E + +++ E + ED+ VTV+ GY+KR + A G Sbjct: 477 YADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFG---- 532 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 M+D D + F ++T +L F++ G V +LP + G+ N++++++ E Sbjct: 533 -MKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDET 591 Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSV 687 I +P E + S Y++F TK+G V++ +L+ + + R K +A+ L DE++ V Sbjct: 592 IVKAIPIKEFDPS---AYLLFFTKNGMVKKTELTHY-KAQRYSKALVALNLKGEDELIDV 647 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 E+ I + T LG + F + V R + GV+GI+L + D V+S I+ +D+ Sbjct: 648 HVTNGESQIFMATHLGYGLWFGEDEVNVVGAR-AAGVKGINLKEDDFVVSGEILQQSDS- 705 Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807 I+ +++G Sbjct: 706 ----------------------------------------------------IVLFTQRG 713 Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867 KR S +F ++R+ +G+ K N +VA+F +++ ++KG + Sbjct: 714 AVKRMSLSEFEKTSRAKRGVVMLRELKKNP-HRVVALFACGLEQRLMAETEKGDRKELQA 772 Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIR 898 E+R R + G F + +V +V R+ Sbjct: 773 KELRTNDRYSNGSFFFDEEESGKVTAVWRLH 803 Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 E +TV++ G+ KRTS F SN G++ TD ++ F +N D ++L Sbjct: 503 EDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTD--------RMLHQFEMNTTDVLLLF 554 Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRE 899 ++KG+ I PV++ IR + + +DE +V I+E Sbjct: 555 TNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKE 600 >gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25] gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25] Length = 424 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/369 (62%), Positives = 287/369 (77%) Query: 18 SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77 ++SI EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRILF M + G +K + K AR Sbjct: 25 TISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMNESGNTHDKAFRKSARA 84 Query: 78 SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137 G+ MGKYHPHG+++IYDALARMAQD+S+ L LIEGQGNFGS+DGD PAA RYTE RL K Sbjct: 85 VGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEGQGNFGSMDGDSPAAMRYTEARLAK 144 Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197 A F+L D+ KDTVDF+ NYDG +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE Sbjct: 145 VASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 V+D +A+I NPD+ + LM+ + PDFPTG +ILGR+G + AY GRGSI++R SH+E Sbjct: 205 VIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMILGRSGARKAYLEGRGSILMRARSHVE 264 Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317 + DR I+V ++PYQVNK+ M++KIAE VR+KRI IA ++DESDR G RVVIELKR Sbjct: 265 EIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKRIEGIAHIQDESDRNGVRVVIELKRD 324 Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377 A+ADV+LNQLYR++ +Q F NM+ALNG +PE TL L+ F+ FREEVV RRT + L Sbjct: 325 ATADVVLNQLYRFSPMQISFGANMLALNGGRPETLTLYRFLQCFIDFREEVVARRTAFEL 384 Query: 378 NKARDRAHV 386 KAR+RA + Sbjct: 385 RKARERAAI 393 >gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16] gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16] Length = 814 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 314/885 (35%), Positives = 475/885 (53%), Gaps = 95/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A Sbjct: 5 LLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRKAA 64 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G +HPHG++++Y+A+ RM+QDW LR +LIE GN GS+DGDPPAA RYTE RL Sbjct: 65 KTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEARL 124 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TV F PN+D + EP VL A +PN+LVNG GI+ G AT+IP H L Sbjct: 125 SAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 184 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ID P+ +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR + Sbjct: 185 GEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAT 244 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G + I++TE+PY+VNKA +++KI EL +K++ IAD+RDE+DR G +VIELK Sbjct: 245 IEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 304 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A A+ ILN LY+ T LQ +S NMVA++ +P+ +L +L A++A R++VV R+ + Sbjct: 305 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRSHF 364 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-LI 434 L KA +R H++ GL A++ LDEV+ IR S SD +D D LI Sbjct: 365 ELKKANERKHIVEGLIKALSILDEVIATIRAS-----------------SDKRDAKDRLI 407 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +T E Q AI+ L+L RLT +R E L I E IL+ Sbjct: 408 ANYGFT----------EAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADE 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +LL +IK+EL S+K + RRT I E + L + E I ED++VTV+ GYVKR Sbjct: 458 KKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTS 517 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y A G M++ D + ++T +L F+ G+ V LP + Sbjct: 518 YRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWK 572 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ + +++ + + + + ++P E+ N +VF TKHG V+R +LS + Q+ R Sbjct: 573 DVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQY-QVQRYT 628 Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 + +A+ L D++++V I + T G + F I G + GV+GI L Sbjct: 629 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEIS-LVGVRAAGVKGIQLK 687 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V ++ IC EE SL Sbjct: 688 EGDFVAAVC-----------PIC---------------PEESGSL--------------- 706 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + V+++G K+ + +F ++R+ +G+ K N + AV ND Sbjct: 707 ----------IVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVM-TNDG 755 Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++I + ++KG V V +R+ R G + T + V+ V Sbjct: 756 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDV 800 >gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4] gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4] Length = 810 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 299/832 (35%), Positives = 473/832 (56%), Gaps = 55/832 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M + G +K + K A+ Sbjct: 10 LPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPFRKSAKTV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++YDA+ RM+Q+W +R LL++ GN GS+DGDPPAA RYTE RL K Sbjct: 70 GNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRYTEARLSKI 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL D+ K+TVD+ PN+D S EPVVL A +PN+LVNG GI+ G AT+IP H+L E+ Sbjct: 130 SAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLSEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG + ++ P L+ LM +I+GPDFPTG ++ G GIK AY TG+G +++R + +E+ Sbjct: 190 IDGVIMQMEKPQTTLEDLMTVIKGPDFPTGGIVQGIDGIKQAYRTGKGKVIVRAKTEVEE 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G R+QI +TEIPY+V KA +++K+ EL +K++ IA++RD++DR G R+V+ELK+ A Sbjct: 250 LRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRIVVELKKEA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 A IL+ L++ T LQ ++ NMVA++ P+ L +++A++ ++EV RR +Y L Sbjct: 310 DAKAILHYLFKNTDLQVTYNFNMVAIHNKTPKLMGLQPLIQAYIDHQKEVATRRAQYDLK 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA+DR H++ GL A++ LDEV+ IR S + + A+ L+ R ++ Sbjct: 370 KAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLI-REYD--------------- 413 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 SE Q AI+ L+L RLT + E L I E IL S +L+ Sbjct: 414 ----------FSEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAILGSEKKLI 463 Query: 499 GIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIV-REDMVVTVSHLGYVKRVPLSVY 556 +IK+ L SVK + PRRT E + D +V ED++VTV+ GYVKR + Y Sbjct: 464 TVIKKGLQSVKKQFADPRRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYVKRTSIRSY 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + D F ++T ++L F+ LG V LP + G+ Sbjct: 524 TASNGEPPG-----MKEGDRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPDIRWKDNGQ 578 Query: 617 ALINILSLNQGERITTIMP---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 + N++S+++ + I MP F E ES ++F TK+G +R++LS Q R K Sbjct: 579 HIANLVSVDRDDCILRAMPVKEFSESES------LLFITKNGMAKRSQLS-LYQAQRFSK 631 Query: 674 --IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731 +A+KL + DE++SV + ++ + T LG + F I + G+ + GV+ I+L Sbjct: 632 PLMALKLKADDEVVSVMRTDGKKELFIATHLGYGLWFDEEEISL-VGQRAAGVKAINLKD 690 Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEER 789 D+V+ A + D + + H A +++ + ++ + K + E + R Sbjct: 691 DDKVVD-AFTFEPEDKVD--LFIVTHRGAVKKMPLSEFDKSSRAKRGLVMLRELKSNAHR 747 Query: 790 ---CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 C+ + KE I ++EKG + +R+S+R G A D ++ + Sbjct: 748 VIGCRRVS-KETLIEILTEKGQQETIDPSAYRMSDRYSNGSFAIDSAQAGSV 798 >gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A] gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A] Length = 857 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 283/746 (37%), Positives = 437/746 (58%), Gaps = 66/746 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I V + D M + + Y+ +I RA+PD RDGLKPV RRIL+ M QMG+ +NK Y Sbjct: 13 EEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSYK 72 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++ GN GS+DGD AA RYTE Sbjct: 73 KSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAMRYTE 132 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A FLL D+ K TV+F PN+D QEP VL AR+PN+LVNG GI+ G AT IP Sbjct: 133 ARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIPP 192 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL EV+D +A+IDNP+I D +++ I+GPDFPTG ++ G+ GIK A TG G I+IR Sbjct: 193 HNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEALTTGSGKIIIRA 252 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 ++E+ S +++IV+TEIPY+VNKA ++ +I L I DI ++RDE+D++G R+ I Sbjct: 253 KMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLRIAI 312 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 +LK+GA A I N L + + LQ ++ NMVA+ ++P +LK ++ ++EVV R Sbjct: 313 DLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKVYLEHQKEVVTNR 372 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 + Y L +A R H++ GL + + EV+ IR S N ++ + +R Sbjct: 373 SNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR------------ 420 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 SE+Q AI+ L+L RL+ + +E ++L EI ILS Sbjct: 421 --------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILS 466 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 + LL IK EL V+ L +PRRT + + + ++++D I E V ++ GYVKR Sbjct: 467 NERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKR 526 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVY------KEKV 603 L A + G + ++ +E+ ++T ++L F++LG ++Y +E+ Sbjct: 527 ASLRSVVASKEVGLKENDAMLYEEE-------LNTLDTLLLFTNLGQYIYLPVYKIEEQK 579 Query: 604 WRLPIGSPQARGKALINILSLNQGE---RITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660 WR G + NI+ ++GE R+ + F D+ ++ TK G +++ Sbjct: 580 WR-------DLGVYINNIVPTSKGETIIRVLKVSDFSIDQK------ILLTTKQGQMKQV 626 Query: 661 KLSDFIQINRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 L+DF +++R + AMKL DE++SV+ Q ++I+ +K G +RF + V+ G Sbjct: 627 NLADF-EVSRYNRPLRAMKLSKDDELVSVD-YNQLDNIVAISKHGYVLRFDTEELPVY-G 683 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHA 744 + GV+ ++LA+GD+V A+ +A Sbjct: 684 LTAGGVKSMALAEGDEV---AVAFYA 706 >gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC 25986] gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC 25986] Length = 575 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 247/514 (48%), Positives = 341/514 (66%), Gaps = 26/514 (5%) Query: 24 EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83 EM+ S++ Y+++VI RA+PD+RDGLKPVHRRIL+ M + G+ N+ + K A GEV+G Sbjct: 77 EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 136 Query: 84 KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143 KYHPHG++A+Y+A+ R+AQ +S+R LI+G GNFG++DGD AA RYTE RL K A LL Sbjct: 137 KYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 196 Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203 DL KDTVD++PNYD S EPV L AR+PN+LVNG GIAVGMATNI HNL E ++ Sbjct: 197 RDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATC 256 Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263 +IDNPD +D LM+I+ GPDFPTGA+I+G GIK +Y TGRGSI +R +H+E T R Sbjct: 257 YLIDNPDATVDELMQIMPGPDFPTGAIIMGSAGIKQSYETGRGSITVRAKAHVESTKTGR 316 Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323 ++V TEIPY VNK + EKIA+LV +KRI I+D+RDES+++G R+VIELK+G V+ Sbjct: 317 SRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELKKGVIPQVV 376 Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383 LN LY+YTSLQ+ F N +AL P+ +L +L+ ++ + +VV RRT++ L KA+ R Sbjct: 377 LNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 436 Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443 AH+L G +A+ ++DEV+ IIR S A L++R Sbjct: 437 AHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIER----------------------- 473 Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503 + QT AILE++L RLTGL RD I+ EL+ L I D+L+ ++LG+IK+ Sbjct: 474 ---FGFTPEQTTAILEMKLRRLTGLERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKE 530 Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537 E+ + + RRT I + D++ ED I E+ Sbjct: 531 EMREISKKFGDKRRTEISQVEKDLDVEDLIADEE 564 >gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans NG80-2] gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans NG80-2] Length = 816 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 314/885 (35%), Positives = 475/885 (53%), Gaps = 95/885 (10%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 + + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A Sbjct: 7 LLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRKAA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G +HPHG++++Y+A+ RM+QDW LR +LIE GN GS+DGDPPAA RYTE RL Sbjct: 67 KTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A LL D+ K+TV F PN+D + EP VL A +PN+LVNG GI+ G AT+IP H L Sbjct: 127 SAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPHAL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + ID P+ +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR + Sbjct: 187 GEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAKAT 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G + I++TE+PY+VNKA +++KI EL +K++ IAD+RDE+DR G +VIELK Sbjct: 247 IEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A A+ ILN LY+ T LQ +S NMVA++ +P+ +L +L A++A R++VV R+ + Sbjct: 307 KDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRSHF 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-LI 434 L KA +R H++ GL A++ LDEV+ IR S SD +D D LI Sbjct: 367 ELKKANERKHIVDGLIKALSILDEVIATIRAS-----------------SDKRDAKDRLI 409 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 + +T E Q AI+ L+L RLT +R E L I E IL+ Sbjct: 410 ANYGFT----------EAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILADE 459 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVP 552 +LL +IK+EL S+K + RRT I E + L + E I ED++VTV+ GYVKR Sbjct: 460 KKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRTS 519 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 Y A G M++ D + ++T +L F+ G+ V LP + Sbjct: 520 YRSYSASNGQDIG-----MKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRWK 574 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672 G+ + +++ + + + + ++P E+ N +VF TKHG V+R +LS + Q+ R Sbjct: 575 DVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQY-QVQRYT 630 Query: 673 K--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730 + +A+ L D++++V I + T G + F I G + GV+GI L Sbjct: 631 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEIS-LVGVRAAGVKGIQLK 689 Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790 +GD V ++ IC EE SL Sbjct: 690 EGDFVAAVC-----------PIC---------------PEESGSL--------------- 708 Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850 + V+++G K+ + +F ++R+ +G+ K N + AV ND Sbjct: 709 ----------IVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPHRIVGAVM-TNDG 757 Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 +++I + ++KG V V +R+ R G + T + V+ V Sbjct: 758 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDV 802 >gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716] Length = 822 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 6 IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDP AA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ KDTV+ N+D + +EPVVL AR PN+ VNG GI+ G AT IPTHNL Sbjct: 126 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D + ++ +P LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R + Sbjct: 186 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G REQIVVTEIPY+VNKA ++++I +L K++ IAD RDE+DR G R+ IELK Sbjct: 246 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A +LN L + T LQ ++ NMVA++ +P R L L +++AF++EV+ RRT++ Sbjct: 306 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ R H++ GL A++ LD+V+ IR S N + A++ L+ Sbjct: 366 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 408 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y + Q AI+ L+L RLT + E L I+ IL+ Sbjct: 409 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+E+ ++K E PRRT+I + + L ++ + ED++V VS GY+KR + Sbjct: 460 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612 ++A G G +R++D+ L +T + + F++ G F+Y+ V L + Sbjct: 520 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 573 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670 G+ L + L+ E I M D+ + +FAT G V+++ LSD+ +R Sbjct: 574 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 630 Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +A+KL +++SV+ E +L ++ G +RF + + V G + GVR Sbjct: 631 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 689 Query: 727 ISLAKGDQVISMAIVLHADADY 748 I+L + DQ++ I L D D+ Sbjct: 690 INLKEDDQLV--GISLAGDGDH 709 >gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1] gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1] Length = 843 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 310/916 (33%), Positives = 499/916 (54%), Gaps = 100/916 (10%) Query: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 E I+ S E++ I S++ E++ S+L YA++VI RA+PDL+DGLKPVHRRI++ Q Sbjct: 11 EKIVKSLEKDT--IFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQ 68 Query: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 + + K+ K A + G VMG YHPHG+++IY+AL RMAQD+SLR LIEGQGNFGS+DG Sbjct: 69 EKLLNSAKFKKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDG 128 Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 D PAA RYTE RL K + LD + ++ VDF NYD S +EPVVL PN+L+NG GI Sbjct: 129 DSPAAMRYTEARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGI 188 Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242 AVG+ATNIP HN+ EV++ + +I NP+ L++ I GPDFPTG I +G+++ ++ Sbjct: 189 AVGLATNIPPHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFRYSGVRDYFS 248 Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-------- 294 TG G ++R +E+ + +++ EIPY V K ++E I +L++ + Sbjct: 249 TGSGKFILRSKIEVEEQV-KKNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLA 307 Query: 295 -DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353 +I ++RDES+ +G R+VIE + A VI+N LY++T LQ+ +SVN+ L KPER + Sbjct: 308 DNIVEIRDESNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGKPERIS 367 Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 L+ +LK ++ + E++ RRT + L + R H+L G +++ E +++I S NPE Sbjct: 368 LLQLLKLYLEHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEED 427 Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473 R + S + + D+ L T+GS + +S++Q + + L+ Sbjct: 428 LR--ARYSLSDEQLDDIFRL------TVGSLKKISISKLQEELVTKTDLSIF-------- 471 Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDC 532 KE IL+S +L + ++L+ ++D+ RRTR+ +E ++ + Sbjct: 472 -----------KES--ILNSDDKLREVFSEKLIELRDKFGDDRRTRVNMEASGAIDYCEL 518 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 + V+++SH GY+ + PLS Y+ +RGG G+ G +D + VLFF Sbjct: 519 FHFQKTVISLSHRGYLSQRPLSTYKLHKRGGSGKEGAFHYKDDKPKMFLVCHGKDDVLFF 578 Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFA 651 S G VYK+K + + + + + N+L L++GE+I TI+ PE S +N Y++FA Sbjct: 579 SDSGKVYKKKAYEMNLREGKNKATITYNVLPGLSKGEKIVTIIALPEG-SYGDNKYLLFA 637 Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711 T G V+R +S F +IN++GK+A+ L D + V T ++ + L + G+ V+F S Sbjct: 638 TSKGLVKRCSMSLFEKINKNGKVAITLRDGDSLKFVITLENDSHVCLASDSGRMVKFLAS 697 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771 IR + R + GV GI++ G+ LIS Sbjct: 698 EIRP-SSRIASGVFGINVGSGE------------------------------LISA---- 722 Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831 S+ EG+ ++L++SE G GK T ++ + R GK + Sbjct: 723 ------SSTYEGD--------------YVLSISELGKGKLTPVSEYSLVKR-GKKVGLIA 761 Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 + G ++A V ++D+I+L++++ R V++I + R+T GV +F ERV Sbjct: 762 QKTTEKTGKVLACTIVRESDEILLLTNQNRQNRFRVSDISVQGRSTSGVNLFKLENKERV 821 Query: 892 VSVERIRESEIVDEAE 907 + + E E D+ E Sbjct: 822 IYFAKNFEQEESDDLE 837 >gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 781 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 310/818 (37%), Positives = 451/818 (55%), Gaps = 105/818 (12%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 ++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+ K + K AR+ GEV+GK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+ A+YDAL RMAQD+S+R LI GQGN+GSVDGDPPA RYTE +L K A LL+ Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTVDF PN+D S EP VL +++PN+L NG GIAVG+AT+IP HNL EV V Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 + NP++ + ++EI++GPDFPTG VI IK Y TGRG + ++ +H+EK G RE Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVEKVQGGRE 251 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QI+V+EIPYQVNKA +++KIA+ VR R+ +I+D+RDESD+ G R+VIELKR A + +L Sbjct: 252 QIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKVL 311 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 +L++YT L+ F VN+V L +P+ + +L+ F+ R +++RRT++ L KA DR Sbjct: 312 KKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDRL 371 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 HV+ GL IA+ NLDEV+ IR S + + AR E++Q + Sbjct: 372 HVVQGLLIALNNLDEVIEGIRRSKDVQEAR-EMLQARFG--------------------- 409 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 L+E Q +A+L+LRL RLT L RD +R E L +I+ ++ S + I +E Sbjct: 410 ----LTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEE 465 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564 ++ + PRRT E+ I +VV V G V V + Sbjct: 466 TENLVKKFGDPRRT------FIEGIEEKIEEGSLVVAVLENGKVMPV--------ENMPE 511 Query: 565 GRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623 G S VV + D F LF+VS G VY W A +AL Sbjct: 512 GESPVVDILDVPFTEGLFLVSNR---------GRVY----W-------LAGSQAL----- 546 Query: 624 LNQGERITTIMPFPEDESSWNNLYV--------VFATKHGNVRRNKLSDFIQINRSGKIA 675 QG ++ F E E ++ + AT++G +++ L +F + G Sbjct: 547 --QGSKVN----FKESEEYIVGAFIRERFADRLLLATRNGMIKKIPLVEF-EYKAQGMRI 599 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 +KL DE++ + +DIL+ T+ G+ RF I I A + G +GI + D+V Sbjct: 600 IKLAEDDEVVGIAQSIDMSDILMFTRRGKVARFSIREIPA-ATPGTKGAQGIKVEDNDEV 658 Query: 736 ISMAIVLHADADY------DERI--CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787 + A V+ D Y D ++ Y + + + R + G +V G+ E Sbjct: 659 -AGARVIREDQPYIIVVTVDGKVKRIYQQEIGVRNRGVKG-----------VNVLGSARE 706 Query: 788 ERCQELKLKEQFILTVSEK---GFGKRTSSYDFRISNR 822 L +K++ L ++ K F R + D +S R Sbjct: 707 RLVDLLPIKDELELLITTKLGRAFYDRIRAEDIPLSKR 744 >gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956] gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956] Length = 825 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 285/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 9 IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDP AA RYTE RL Sbjct: 69 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ KDTV+ N+D + +EPVVL AR PN+ VNG GI+ G AT IPTHNL Sbjct: 129 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D + ++ +P LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R + Sbjct: 189 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G REQIVVTEIPY+VNKA ++++I +L K++ IAD RDE+DR G R+ IELK Sbjct: 249 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A +LN L + T LQ ++ NMVA++ +P R L L +++AF++EV+ RRT++ Sbjct: 309 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ R H++ GL A++ LD+V+ IR S N + A++ L+ Sbjct: 369 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y + Q AI+ L+L RLT + E L I+ IL+ Sbjct: 412 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+E+ ++K E PRRT+I + + L ++ + ED++V VS GY+KR + Sbjct: 463 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKRSSI 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612 ++A G G +R++D+ L +T + + F++ G F+Y+ V L + Sbjct: 523 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670 G+ L + L+ E I M D+ + +FAT G V+++ LSD+ +R Sbjct: 577 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 633 Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +A+KL +++SV+ E +L ++ G +RF + + V G + GVR Sbjct: 634 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 692 Query: 727 ISLAKGDQVISMAIVLHADADY 748 I+L + DQ++ I L D D+ Sbjct: 693 INLKEDDQLV--GISLAGDGDH 712 >gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM 16041] gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM 16041] Length = 817 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 287/726 (39%), Positives = 426/726 (58%), Gaps = 44/726 (6%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A+ G VMG Sbjct: 7 MGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSVGNVMGN 66 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 +HPHG+++IY+AL R++QDW LR L+E GN GS+DGDP AA RYTE RL K A +L Sbjct: 67 FHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKIAGLMLQ 126 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV+ N+D + +EP VL AR PN+LVNG GI+ G AT IPTHNL EV+D + Sbjct: 127 DIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEVLDALIY 186 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 +I +PD L+ LME I GPDFPTG ++ G GIK AY TGRG IV+R + IE G R+ Sbjct: 187 LIKHPDASLEKLMEFIPGPDFPTGGIVQGVEGIKKAYQTGRGRIVVRAKTEIETLRGGRQ 246 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QI VTEIPY+VNKA ++++I +L K++ I + RDE+DR G R+ IELKR A+A IL Sbjct: 247 QINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRNANAAGIL 306 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N L + T LQ ++ NMVA++ +P R L IL +++AF++EVV RRT Y L+KA+ R Sbjct: 307 NYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLAFQKEVVRRRTSYNLDKAQRRL 366 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H++ GL A++ LD+V++ IR S N + A++ +LID ++ Sbjct: 367 HIVEGLIKALSILDQVIKTIRASKNRKDAKQ----------------NLIDQYAF----- 405 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 S+VQ AI+ L+L RLT ++ +E L I E ILS L ++++E Sbjct: 406 -----SDVQAEAIVTLQLYRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELSKVVRRE 460 Query: 505 LLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 + +VK E PRRT+I + + L+++ + + ED+VV VSH GY+KR + ++A Sbjct: 461 MQAVKKEFGNPRRTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASSLD 520 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G +R++D+ + +T + F++ G V V L + G+ + + Sbjct: 521 EDG-----LREDDYPLLVTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTI 575 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR---SGKIAMKLD 679 L E I M F + + + +F T G V+++ D+ +R +A+KL Sbjct: 576 GLTDNEEIIKAMVFDKLDLPGS---FIFGTSDGQVKQSAYKDYQPGSRYKSHASMAVKLK 632 Query: 680 SRDE-ILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 S D ++SV+ T EN LL ++ G VRF ++ + V G + GVR I+L D + Sbjct: 633 SADATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPV-TGLRTAGVRAINLKDDDTL 691 Query: 736 ISMAIV 741 + +V Sbjct: 692 ADLVLV 697 >gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142] gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142] Length = 846 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/756 (38%), Positives = 424/756 (56%), Gaps = 69/756 (9%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 21 ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 80 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RM QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 81 RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 140 Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A +L ++ + VDF N+D S QEPVVL A+ PN+L+NG GIAVGMATNIP HN Sbjct: 141 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 200 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+IDNP++ + L +II GPDFPTG I+ GI++AY G+G I +RGV Sbjct: 201 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIPTQGIEDAYRHGKGIISVRGVV 260 Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE K +R I+VTE+PYQV K+ +EKIA+LV R+ IAD+RDESDR G Sbjct: 261 RIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSGM 320 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A +L +LY+ T+LQ F M+AL +P + +L +L+ F+ FRE Sbjct: 321 RVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREHT 380 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ Y L + R+R H+L GL IA+ NLD ++ I+R + + TA+ + Q Sbjct: 381 LTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQE-------- 432 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + LSE Q IL + + RLTGL R ++ E + L I E Sbjct: 433 ------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELQGRINELE 474 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR-------EDMVVT 541 ++L++R L ++K+EL S+K + RRTRIV+ ++ + Sbjct: 475 NLLNNRPEFLKVLKKELRSLKRKYGDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTTS 534 Query: 542 VSHLGY-VKRVPLSVYRAQRRGGKG------RSGVVMRDEDF-VTDLFI------VSTHT 587 +S+ P S++ Q + + R D V D + + Sbjct: 535 ISNREPDTTSQPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVPIYSEPIQERE 594 Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL------NQGERITTIMPFPEDES 641 + + +G Y V +P Q I +LSL +++ ++ F D + Sbjct: 595 QFIVITDIGKAYPVNVADVPPIEIQP-----IPLLSLLPKSAQRDSKKVVSLF-FLSDNT 648 Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701 +L ++ T G ++R +LS+ + G + +KL +D + SV + ++ + Sbjct: 649 ENKDLLLL--TNQGKIKRIQLSELAGLTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMS 706 Query: 702 LGQCVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVI 736 G+ +RFP + + GRN+ G + + L G+ +I Sbjct: 707 SGRVLRFPVVDEVIPIMGRNAQGNQALKLRYGETII 742 >gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16] gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16] Length = 807 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/716 (38%), Positives = 420/716 (58%), Gaps = 54/716 (7%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD RDGLKPV RRIL+ M G +K Y K A+ G V+G YHPHG++ Sbjct: 23 YSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPYRKAAKTVGNVIGNYHPHGDS 82 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 ++Y+A+ RM+Q+W +R LI+ GN GSVDGDPPAA RYTE RL + L+ DL K TV Sbjct: 83 SVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYTEARLSAISAELMRDLDKGTV 142 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 D+ PN+D S +EPVVL A +PN+LVNG GI+ G AT+IP H+L E++DG ++ P Sbjct: 143 DYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLPEIIDGITLLMQKPHT 202 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 LD L+EII+GPDFPTG ++ G GI+ AY TG+G IV+RG + IE+T G R+QIV+TEI Sbjct: 203 SLDELLEIIKGPDFPTGGIVQGSNGIRQAYETGKGKIVVRGRTAIEETRGGRKQIVITEI 262 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY+V KA++++K+ E+ +K++ IA++RD++DR G R+V+ELK+ A + IL+ L++ T Sbjct: 263 PYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIVVELKKEADPEAILHYLFKNT 322 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ + NMVA++ P+ L+ +++A++ +++V RR+++ L KA DRAH++ GL Sbjct: 323 DLQVTYHFNMVAIHNKTPKLMGLLDLMQAYIDHQKQVFTRRSQFELKKAVDRAHIVEGLM 382 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 AV+ LDEV+ +IR S + + A+ L + +E Sbjct: 383 KAVSILDEVIAVIRASKDKKDAKANLQSQ--------------------------FGFTE 416 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +I E IL+S +L+ +IK+EL +K Sbjct: 417 PQAEAIVTLQLYRLTNTDITTLQKEAEELEKQIAELKAILASEKKLISVIKKELNQIKKT 476 Query: 512 LDTPRRTRI---VEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565 +PRRT I +E + +DM I ED+ VT++ GYVKR L Y A + G G Sbjct: 477 FASPRRTEIRAEIEEIKINMDM----LIASEDVRVTITKAGYVKRTSLRSYSASSQDGPG 532 Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625 M++ D + +T VL F+ G V LP + G+ + N+++++ Sbjct: 533 -----MKEGDRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDIRWKDDGQHVANLVAID 587 Query: 626 QGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS 680 + I I F E + Y++F T+ G +R+ L + Q R K +A+KL Sbjct: 588 ADDEIIAAQIIREFAETK------YLLFMTRAGMAKRSTL-NLYQAQRYSKPLMALKLKE 640 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736 DE++ V + ++ + T G + F + + G+ + GV+GI+L +GD I Sbjct: 641 GDEVVRVLLTDGQQELFVATAFGYGLWFSEEDVSL-VGQRAAGVKGINLKEGDYCI 695 >gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653] Length = 816 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 296/756 (39%), Positives = 426/756 (56%), Gaps = 73/756 (9%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 D+ EE+ I + + DEMQ SYL YA +VI RA+PD RDGLKPVHRRIL+ M +MG+ Sbjct: 10 PPDDFEER-ILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLR 68 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125 + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+ + DPP Sbjct: 69 PERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPP 128 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTECR+ A + + + +DTVDF PNYDGS QEPV L A YPN+LVNG GIAVG Sbjct: 129 AAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVG 188 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+P HNLGEVV +I +P+ DLD LM + GPD PTG I+G G+++AY TGR Sbjct: 189 MATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIVGLAGVRDAYETGR 248 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 GS IR +E + R+ +VVTE+P+ V ++ KI +LV K++ IAD++D +DR Sbjct: 249 GSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLTDR 308 Query: 306 -QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 G R+VIE+K G + + +L QLY+ T ++ F +N VAL +P L +L+ ++ Sbjct: 309 AHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 368 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R +VV RR+++ K R+R H++ GL +A+ ++DEV+R+IR S N A+ LM R Sbjct: 369 RFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDR---- 424 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS+VQT+ IL+ L RLT R ++ +E + L EI Sbjct: 425 ----------------------FDLSDVQTQYILDTPLRRLTKFDRIELESERDRLNAEI 462 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536 +E IL S + L ++ EL +V + TPRRT ++E L++ D+ C Sbjct: 463 EELTRILDSDAELRKLVSSELATVGKKFGTPRRTVLLESADAPVAAVPLEVADDPC---- 518 Query: 537 DMVVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V +S G + R P + + +R D + + V Sbjct: 519 --RVLLSSTGLLARTANGEPFAGEQTKR-----------SKHDVIVSAVPATARAEVGAV 565 Query: 593 SSLGFVYKEKVWRLP-----IGSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNL 646 +S G + + +V LP G+P G A I LSL +GE + + DESS Sbjct: 566 TSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICLTTL--DESSPG-- 621 Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQC 705 + T+ G V+R + D+ ++ + L D I+ +VE T E D++ T Sbjct: 622 -LAIGTEQGVVKR-VVPDYPAHKEELEV-IGLKEGDRIVGAVELRTGEEDLVFITDNAHL 678 Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R+P +R GR + G+ G+ LA +VIS V Sbjct: 679 LRYPAGQVRP-QGRAAGGMAGVKLAPDAKVISFTAV 713 >gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A] gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri SD2112] gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A] gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri SD2112] Length = 821 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 283/735 (38%), Positives = 432/735 (58%), Gaps = 45/735 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 6 IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDPPAA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTV+ N+D + +EP VL AR PN+LVNG GI+ G AT IPTHNL Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D + +I +P LD LME I GPDFPTG +I G GI+ AY TGRG +V+R + Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE GDR+QI VTEIPY+VNKA ++++I +L K++ IA+ RDE+DR G R+ IELK Sbjct: 246 IETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+A+ ILN L + T LQ ++ NMVA++ +P R L IL +++ F++E++ RRT+Y Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H++ GL A++ LD+V++ IR S N + A+ L+ + +N Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Q AI+ L+L RLT +++ E L I E IL++ + Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNEN 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L ++ +E+ ++K E PRRT+I E L L+++ + + ED+VV VSH GY+KR Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKI-ENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSS 518 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + ++A G +R++D+ + +T + + F++LG + + + + Sbjct: 519 IRSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWK 573 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670 G+ + + L E I M F + + ++ T G V++ +D+ +R Sbjct: 574 DTGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYK 630 Query: 671 -SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRG 726 +A+KL ++++V+ T EN LLT ++ G VR+ ++ + V G + GVR Sbjct: 631 SHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPV-TGIRTAGVRA 689 Query: 727 ISLAKGDQVISMAIV 741 I+L DQV +V Sbjct: 690 INLKDDDQVADQILV 704 Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT+S +G+ R D ++ G+RA ++ +++ + V D I +++ + Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQDIAVITQR 716 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887 G +PV+EI + +RA +G ++ K Sbjct: 717 GAFKEMPVDEIEVGARARRGELVLRRLK 744 >gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] Length = 825 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 284/742 (38%), Positives = 434/742 (58%), Gaps = 47/742 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 9 IEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 68 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDP AA RYTE RL Sbjct: 69 KAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTEARL 128 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ KDTV+ N+D + +EPVVL AR PN+ VNG GI+ G AT IPTHNL Sbjct: 129 SKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPTHNL 188 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GE++D + ++ +P LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R + Sbjct: 189 GELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRAKTS 248 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G REQIVVTEIPY+VNKA ++++I +L K++ IAD RDE+DR G R+ IELK Sbjct: 249 IETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAIELK 308 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RG A +LN L + T LQ ++ NMVA++ +P R L L +++AF++EV+ RRT++ Sbjct: 309 RGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRRTRF 368 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L +A+ R H++ GL A++ LD+V+ IR S N + A++ L+ Sbjct: 369 DLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLV----------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 ++Y + Q AI+ L+L RLT + E L I+ IL+ Sbjct: 412 -AAYD--------FTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILTDEK 462 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+E+ ++K E PRRT+I + + L ++ + E+++V VS GY+KR + Sbjct: 463 TLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKRSSI 522 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIGSPQ 612 ++A G G +R++D+ L +T + + F++ G F+Y+ V L + Sbjct: 523 RSFKASEVGDNG-----LREDDYPLLLEQTTTLSHLYMFTNQGRFIYR-PVHELTDARWK 576 Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-- 670 G+ L + L+ E I M D+ + +FAT G V+++ LSD+ +R Sbjct: 577 DTGEHLSQTIDLDDDEVIVKAMLL--DKLDLPGTF-IFATSDGQVKQSALSDYQPGSRYK 633 Query: 671 -SGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +A+KL +++SV+ E +L ++ G +RF + + V G + GVR Sbjct: 634 THASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDVPV-TGVRTAGVRA 692 Query: 727 ISLAKGDQVISMAIVLHADADY 748 I+L + DQ++ I L D D+ Sbjct: 693 INLKEDDQLV--GISLAGDGDH 712 >gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110] gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110] Length = 838 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/754 (37%), Positives = 424/754 (56%), Gaps = 63/754 (8%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 IT ++ EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ + KCA Sbjct: 13 ITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RM QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A +L ++ + VDF N+D S QEPVVL A+ PN+L+NG GIAVGMATNIP HN Sbjct: 133 SPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+IDNP++ + L +II GPDFPTG I+ GI++AY G+G I +RGV Sbjct: 193 LGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQTQGIEDAYRHGKGIIPVRGVV 252 Query: 255 HIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IE K +R I+VTE+PYQV K+ +EKIA+LV R+ IAD+RDESDR G Sbjct: 253 KIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A A +L +LY+ T+LQ F M+AL +P + +L +L+ F+ FRE Sbjct: 313 RVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREHT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ Y L + R+R H+L GL IA+ +LD ++ I+R + + TA+ + Q Sbjct: 373 LTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQE-------- 424 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + LSE Q IL + + RLTGL R ++ E + L I E Sbjct: 425 ------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELAGRINELE 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVT 541 ++L++R L ++K+EL S+K + RRTRIV+ +++ Sbjct: 467 NLLNNRPEFLKVLKKELRSLKRKYGDQRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTTA 526 Query: 542 VSHLGYVKRV-PLSVYRAQRRGGKG------RSGVVMRDEDFVTDLFIVSTHTSV----- 589 S K P S++ Q + + R D VS ++ Sbjct: 527 TSDKETEKTTRPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQERE 586 Query: 590 --LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN---QGERITTIMPFPEDESSWN 644 + + +G Y V +P Q L+++LS +++ ++ F D + Sbjct: 587 QFIVITDIGKAYPVNVADVPPIDIQP--IPLLSLLSKTAQRDSKKVVSLF-FLSDTTDNK 643 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704 +L ++ T G ++R +LS+ + G + +KL +D + SV + ++ + G+ Sbjct: 644 DLLLL--TNQGKIKRVQLSELEGLTNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGR 701 Query: 705 CVRFP-ISAIRVFAGRNSVGVRGISLAKGDQVIS 737 +RFP + + GRN+ G + + G+ ++S Sbjct: 702 VLRFPVVDEVIPIMGRNAQGNQALKSRYGETIVS 735 >gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta] gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta] Length = 877 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 293/850 (34%), Positives = 482/850 (56%), Gaps = 60/850 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + + +EM SY+ YA++VI GRA+PD+RDGLKPVHRRILF M ++ + Y KCA Sbjct: 65 IINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCA 124 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GEV+GKYHPHG+ A+YD+L RM+Q++S+R +LI G GNFGS+D DPPAA RYTEC+L Sbjct: 125 RVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMRYTECKL 184 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 + LL +L TV++ N+DGS EP ++ + P++L+NG GIAVGMAT+IP HN Sbjct: 185 SNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHN 244 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+V C+A+IDN +I L++ + PDFPTG +I+G K+ Y G SI++RG Sbjct: 245 LGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSIILRGKI 304 Query: 255 HIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 ++E + + +++TEIP+Q+NK+ ++ K+A+LV K I I+D+RDESDR+G R+ Sbjct: 305 NVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKGIRI 364 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIE+KR I+ + + +SLQ FS M+ + +P L IL F+ FR +++ Sbjct: 365 VIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHFRRKIIR 424 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 + K+ L + ++L G++I++ +D + I+ S N A+ LM+ Sbjct: 425 KNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----------- 473 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LS+ Q+ AIL L+L RLT L I N+ + E I Sbjct: 474 ----------------FGLSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCI 517 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548 LSS + GIIK ++ ++ + PR+T ++ + + +E+ + I + V+ ++ Y+ Sbjct: 518 LSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIENYESVIMITQY-YI 576 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 K++ L + +Q RG KG+ G+++ D D ++ F + ++ SS G YK KV R+PI Sbjct: 577 KKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPI 636 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 ++G +++IL + +I++I+ E+ ++V T+ G ++R +S+F I Sbjct: 637 SKRNSKGTPILSILKGLENNQISSIIATSNCETEK---FLVLLTQKGLIKRTSISNFNNI 693 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA-GRNSVGVRGI 727 + G I + LD D + V C ++ ++++TK G+ +RF S + + GR S G++ I Sbjct: 694 SSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSI 753 Query: 728 SLAKGD----------QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777 L D Q I+ I+L + Y +RI + + Q+R G ++ SL+ Sbjct: 754 DLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRI-KVTELKIQKRGKKGI--KVISLRE 810 Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI---RATDVSK 834 + + + IS C E E+ +++ S K+ S D + ++ KGI R T+ K Sbjct: 811 NVN-DYLISSRFCIE---NEEILISTSYGNVVKQKIS-DIAVQKKNSKGIIIQRLTEGDK 865 Query: 835 INEIGALVAV 844 +++I + +V Sbjct: 866 VSKISIINSV 875 >gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20] gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20] Length = 820 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 281/772 (36%), Positives = 454/772 (58%), Gaps = 49/772 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M Q G ++K Sbjct: 2 EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG +HPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TV+ N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNLGE++DG + +ID+P LD LM+ I GPDFPTG ++ G+ IK AY TG+G +++ Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV+ EIPY+VNKA +++K+ E+ KRI IA++RDE+DR G ++ Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ +P++ L IL++++ R EV+ Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ L+ + Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q AI+ L+L RLT ++ E L I E I Sbjct: 414 ------------------FTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 L+ + LL +IK+EL +K + TPR T I + + +E + + +E++VVTV+ GYV Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G M++ D + ++T +L ++ G V LP Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + +++L Q E I + + E + N V +K+G +++ ++++F + Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEF-E 626 Query: 668 INRSGK----IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL D DE+++V T+E D+ L + L +R+P++ + V G Sbjct: 627 PWRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYPLNEVPV-VGPK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772 + GV+ ++L D +I+ +V ++ D I + A +R+++ + ++ Sbjct: 686 AAGVKAMNLKADDYLINGLLVY---SEGDTPIVLITQRGAAKRMLAQEINQL 734 >gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus casseliflavus ATCC 12755] gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus casseliflavus ATCC 12755] Length = 820 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/775 (36%), Positives = 454/775 (58%), Gaps = 52/775 (6%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M Q G ++K Sbjct: 2 EHRSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG +HPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + + LL D+ K+TV+ N+D + +EP VL A+YPN+LVNG GI+ G AT I Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNLGE++DG V +ID+P LD LM+ I GPDFPTG ++ G+ IK AY TG+G +++ Sbjct: 182 PTHNLGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV+ EIPY+VNKA +++K+ E+ KRI IA++RDE+DR G ++ Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ +P++ L IL++++ R EV+ Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +R+++ L KA+ R H++ GL A++ LDEV+ IR S + + A+ L+ + Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHG-------- 413 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +E Q AI+ L+L RLT ++ E L I E I Sbjct: 414 ------------------FTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 L+ S LL +IK+EL +K + TPR T I + + +E + + +E++VVTV+ GYV Sbjct: 456 LNEESELLKVIKKELREIKKKYSTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A + G M++ D + ++T +L ++ G V LP Sbjct: 516 KRSSLRSYGASKPEEIG-----MKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570 Query: 609 GSPQARGKALIN-ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ + +++L Q E I + + E + N V +K+G +++ ++++F + Sbjct: 571 LKWKDLGEHISQTVMTLAQDEMIIGVFAYKEIDPLKN---FVLISKNGMIKQTRMTEF-E 626 Query: 668 INRSGK----IAMKL-DSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720 R+ K MKL D DE+++V T+E D+ L + L +R+ ++ + V G Sbjct: 627 PWRTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPV-VGPK 685 Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 + GV+ ++L D +I+ +V ++ D I + A +R+++ +EIT L Sbjct: 686 AAGVKAMNLKADDYLINGLLVY---SEGDTPIVLITQRGAAKRMLA---QEITQL 734 >gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5] gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5] Length = 793 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 302/893 (33%), Positives = 475/893 (53%), Gaps = 122/893 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+ NK Y K A Sbjct: 4 IKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GE +GK+HPHG+A++YDAL RMAQD+++R LIEGQGNFGS+DGDPPAA RYTE RL Sbjct: 64 RVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ K+TVD PN+D S +EP VL +++PN++ NG GIAVG+AT+IP HN Sbjct: 124 TKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPHNF 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254 EV + + + PD ++ L I+GPDFPTG VI + + + Y + RGSI I+G + Sbjct: 184 TEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKGKA 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G+R++IV+ EIPYQVNK +++KIAELVR + I+DLRDESDR G R+VIEL Sbjct: 244 RIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+ +L +LY+ T L+ F VN+ L +P L +L+ F+ R E++ RRT Sbjct: 304 KRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRRTL 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA +R H++ GL A+ N D+V+ I+R S + AR EL+ +N Sbjct: 364 FELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQAR-ELLTSQFN----------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q AIL++RL+R T L +++E L +I+ ILSS Sbjct: 412 --------------LSETQANAILDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + +E + + R+T I +++ +E + + + G + Sbjct: 458 DEKIKVFIEETDELVRKYGDQRKTTIAT------EKELTFKEHFMFAILNTGRIVN---- 507 Query: 555 VYRAQRRGGKG--------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+ + K + + + + + + V + FF+ G Y W L Sbjct: 508 -YKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAY----WSL 562 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 I P+ K +NI +GE + T + E N ++++ TK G ++R D I Sbjct: 563 VIDLPKGEDK--LNI----EGEIVGTAY---QGEGEENRVFLI--TKKGIIKRMSDED-I 610 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 G + M L+ DE++ + I + TK + F + +R+ G + GV Sbjct: 611 FYKSQGHMVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEA 669 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D+ ++ A L+ Sbjct: 670 IDLDENDE-VAGAFFLNG------------------------------------------ 686 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++L + G+ K +F I R+ KG+ A K+N+ +V++ P Sbjct: 687 ----------HEYLLVSTSFGYMKHVEKTEFPIKKRAQKGLMAV---KLNKGDYVVSILP 733 Query: 847 VNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897 VN++D++++ + +G L+++ +++ I I R + G +F D R+V+V ++ Sbjct: 734 VNESDEVLINTKRGKLLKLKIDKEAIPIEKRTSLGKNLFRFEAD-RIVNVLKL 785 >gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1] gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1] Length = 766 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 296/754 (39%), Positives = 425/754 (56%), Gaps = 84/754 (11%) Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85 + SYL YA++VI+GRAIPD+RDGLKPV RRIL+ M +M + +K + KCARI G+ MG+Y Sbjct: 13 RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72 Query: 86 HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145 HPHG+ AIYDAL RMAQD++LR L+ GQGNFGS+DGDPPAA RYTE +L K LL+D Sbjct: 73 HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132 Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205 + DTVDF PN+D S EP VL A+ PN+L NG GIAVG+AT+IP HNL EV D VA+ Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192 Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265 N DI ++ LM+ I+GPDFPTG +I+G Y TGRG + ++ + +EKTS REQ Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVGEVS-PEVYKTGRGQVTVQAKARVEKTSSGREQ 251 Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325 I++TEIPY VNKA +++KIAEL R ++ +I+DLRDESD++G R+VIELKR A + +L Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVLK 311 Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385 +LY+ TSL+ F +NMVAL G +P+ L IL F R V+ RRT++ L KA +R H Sbjct: 312 KLYKNTSLRKNFPINMVALVGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEERLH 371 Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445 ++ GL I + ++D+++ IR S + + A+ +LM WN Sbjct: 372 IVEGLLICIKDIDKIIETIRASQDTQEAKEKLMS-GWN---------------------- 408 Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505 L+E Q +AIL+LRL RLT L ++ E + L IK +IL ++ + I +E Sbjct: 409 ---LTEKQAQAILDLRLQRLTSLETSKLQKEHDELIENIKTYKNILENKQERINIFIKET 465 Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR---- 561 + D PRRT +EG++ ED V V V+ G+VK P+ + ++ Sbjct: 466 KELADRFKDPRRT-FIEGMI---KEDTYVD----VFVTRNGFVK--PIELLEEEKSPIVN 515 Query: 562 -------------GGKGR------------SGVVMRDED-FVTDLFIVSTHTSVLFFSSL 595 KGR S + M+D D V F+ + S L Sbjct: 516 VASLKFTEGLFIVSNKGRVYWTAGSEALSGSSIHMKDTDEHVVGAFVREQYNSRLLI--- 572 Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655 K + ++P+ + + + IL L++GE + I +DES ++ TK G Sbjct: 573 -LTNKGSIKKIPLVEFEYKTQGF-QILKLSEGEEVVYISG-SQDESE-----ILILTKKG 624 Query: 656 NVRRNKLSDFIQINRSGKI--AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 + R + D S K +KL+ DE +SV + LL T+ G + + I Sbjct: 625 YINRIQTQDVGATTSSSKAIQCIKLNENDEAISVRALDDKIFGLLITEEGYAKKIKLEDI 684 Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747 + S +GI++ K + + ++ + D D Sbjct: 685 ----PKKSRTSQGINVLKQKFLNACDLIFYNDDD 714 >gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265] Length = 758 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 275/723 (38%), Positives = 424/723 (58%), Gaps = 63/723 (8%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 GI IT+E++ SY+ YA++VI+GRA+PD+RDGLKPV RRI++ M + G +N Y K Sbjct: 3 GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 ARI G+V+GKYHPHG+A++YDAL RMAQD+ +R L++G GNFGS+DGDPPAA RYTE R Sbjct: 63 ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + + +L+ DL KDTV++ PN+DGS +EP VL A +P +LVNG GIAVG++T IP HN Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++D + + NP+ LM ++GPDFPTG I+ + Y G+G I +RG + Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRA 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 +E+ G + ++V+ EIPY VNKA ++ +IA+L+R++++ + ++RDES+RQG RVV+EL Sbjct: 243 KLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+GAS ILNQLY T+L++ F++NMVAL P + TL + +FV FR+E ++RRT+ Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 YLL+KA R V+ G+ A+ N+D V+ IIR + + A+R LM + Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQ-------------- 408 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 IG L+EVQ A+LE++L L + ++ + EL SL I E +IL+S Sbjct: 409 ------IG------LTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-IVREDMVVTVSHLGYVKRVPL 553 ++LL +I +EL VK RRT I G D + E E + + G ++R Sbjct: 457 TKLLEVIAEELKHVKKLFADQRRTLI--GFSDQQTETVQAAEETFFIELLEYGIIRR--- 511 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 K ++ +V DF+ V V+F ++ G ++ + +P Sbjct: 512 ---------SKTQTNLV----DFIE----VQGSDPVMFLTNFGKIFCISAYEIP---ESQ 551 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 RG AL + + E++ + N ++ ++ G +R +L D +I G Sbjct: 552 RGVALNALFPMGNDEKVLLL--------GTQNQELIAISEKGKGKRFRL-DVEKIPSRGG 602 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 LD D ++SV ++++ + G+ +R + +I G + GV+ + +GD Sbjct: 603 YYFLLDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPE-RGLRTGGVKVMRTYEGD 660 Query: 734 QVI 736 +V+ Sbjct: 661 RVV 663 >gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 830 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 277/725 (38%), Positives = 424/725 (58%), Gaps = 43/725 (5%) Query: 25 MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84 M + + Y+ +I RA+PD RDGLKPV RRIL+ M G W+K Y K A+ G V+G Sbjct: 24 MGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTWDKAYRKSAKTVGLVIGN 83 Query: 85 YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144 YHPHG++++YDA+ RM+QDW +R I+ QGN GS+D DP AA RYTE RL K + +LL Sbjct: 84 YHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAAMRYTEARLGKISEYLLQ 143 Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204 D+ KDTV + PN+D + EP VL ARYPN+LVNG GIA G ATNIP HNLGE +D + Sbjct: 144 DIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHNLGECIDASIY 203 Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264 I +PD LD LME ++GPDFPTG ++ G GIK+A+ +G+G I++R IE+T + Sbjct: 204 RIQHPDCTLDDLMEFVQGPDFPTGGIVQGLDGIKDAFTSGKGRIMVRSKVSIEQTKT-VQ 262 Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 QI+V EIPY+V K+ M++KI ++ K+I I D+RDESDR G RVVI+LK+ A A +IL Sbjct: 263 QIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRNGLRVVIDLKKDADAQLIL 322 Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384 N LY+ T LQ ++ N++A+ +P + L +L AF+A R EV++RR+ + L+K R Sbjct: 323 NYLYKNTDLQVSYNYNVIAIKDKRPVQMGLAAMLDAFIAHRREVILRRSAFDLDKKEKRC 382 Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444 H+L GL AV+ LDE++ +IR S + ++ ++++ Sbjct: 383 HILEGLIKAVSILDEIIALIRSSKDKADSKVKIIE------------------------- 417 Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504 SE Q AI+ +RL RL+ +R E +L EIKE +IL +L ++ E Sbjct: 418 -AFGFSEPQAEAIVTMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAE 476 Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562 L VK TPR T+I + ++ + I +E ++ T+S GYVKRV + Y A Sbjct: 477 LKEVKKAFPTPRLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDA 536 Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622 G +++ D + V+T ++LFF+S G V+ + + G + + + Sbjct: 537 MTG-----IKEGDHLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKI 591 Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA--MKLDS 680 + E+IT + ++ N Y++ T+HG V++ + ++ +++R+ K MKL Sbjct: 592 KITSDEKITDAFIVKDFKT---NSYMISITRHGLVKKTAICEY-EVSRNNKTMSNMKLLE 647 Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740 DE++ +E++IL+ +K G R+PIS I + R S GV+ ++L + + I+ A+ Sbjct: 648 DDEVVQTYVAYEEDEILIASKKGYITRYPISLIPATSPR-SKGVKAMNLVEDE--IASAL 704 Query: 741 VLHAD 745 + + D Sbjct: 705 IYNND 709 Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +EQ + T+S G+ KR S + +N + GI+ D L+ VN D I+ Sbjct: 509 QEQVMFTISRDGYVKRVSMRSYGAANDAMTGIKEGD--------HLIGYGEVNTLDNILF 560 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908 + KGT VPV E+ A G I S K + S E+I ++ IV + ++ Sbjct: 561 FTSKGTYGYVPVYEVDDAKWKEIGSHINSKIK---ITSDEKITDAFIVKDFKT 610 >gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23] gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23] gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99] Length = 819 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 281/746 (37%), Positives = 444/746 (59%), Gaps = 51/746 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ ++L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRAAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+L+V DI L T+ G +R+PI+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKDDDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVLHADADY 748 GV+ I+L +GD V+ ++ DA + Sbjct: 684 GVKAINLKQGDIVVGGVVLREGDAKH 709 >gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC 700633] gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC 700633] Length = 818 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 286/732 (39%), Positives = 430/732 (58%), Gaps = 42/732 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 ++ I +++ D M + + Y+ +I RA+PD+RDGLKPV RRIL+ M G K++ Sbjct: 4 QQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQFR 63 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ R++QDW LR +L+E GN GS+DGDP AA RYTE Sbjct: 64 KSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYTE 123 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K + LL DL K TVDF N+D + +EP VL AR+PN+LVNG GI+ G AT IPT Sbjct: 124 ARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPT 183 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV+D + ID+P + LM+ ++GPDFPTGA+I G ++ AY TG+G +V+R Sbjct: 184 HNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAIIQGIDELEQAYETGKGKVVVRS 243 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G + QIVVTEIPY+VNKA +++KI E+ K+I IA++RDESDR G ++VI Sbjct: 244 KTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQIVI 303 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ ILN L + T LQ ++ NMVA++ +P + L IL +++A ++EV+ +R Sbjct: 304 ELKKEANAEGILNYLLKNTELQINYNFNMVAIDARRPMQVGLKKILDSYIAHQKEVITKR 363 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 T++ LNKA+DR H++ GL A++ LDEV+ +IR S + + A+ +L++ Sbjct: 364 TQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVE------------- 410 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 +Y D TM Q AI+ L+L RLT ++ E L + IL Sbjct: 411 -----TY----DFTM----TQAEAIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILK 457 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 S LL ++KQEL +K + TPR T I + + +E E I E++ V + GY KR Sbjct: 458 SEKTLLQVMKQELRELKKKYATPRLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKR 517 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610 V + + G +R+ D V + VST S++ F+S G V +P Sbjct: 518 VSPRSFASSAPEENG-----LREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAK 572 Query: 611 PQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRNKLSDF---- 665 + G L +SL E I M +D + ++ + VVF TK G V++ +++F Sbjct: 573 WKDVGHHLSQSISLATNEIILAGMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFNTYR 632 Query: 666 -IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + S I +K + DE++++E QE +I + T G +R+ +S + V G + G Sbjct: 633 GYKTRTSNAIKLKT-ATDEVVAIELVPNQEQEIFIVTHCGFGLRYELSEVPV-VGTVASG 690 Query: 724 VRGISLAKGDQV 735 V+ I+L K D V Sbjct: 691 VKAINLRKDDFV 702 Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust. Identities = 63/280 (22%), Positives = 123/280 (43%), Gaps = 24/280 (8%) Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688 +I T + PE+E +YVV ATK G +R F S L DE+L V+ Sbjct: 493 KIETEILIPEEE-----VYVV-ATKQGYYKRVSPRSFAS---SAPEENGLREGDEVLLVQ 543 Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHAD 745 + + ++L T G + P+ I A VG + ISLA +++I +V D Sbjct: 544 KVSTLDSLVLFTSKGNYLHLPVHEIPE-AKWKDVGHHLSQSISLAT-NEIILAGMVKEKD 601 Query: 746 AD---YDERICYMKH--MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL---KE 797 ++ D + + + Q + +T + ++++ + + ++L +E Sbjct: 602 SNDAYQDWTVVFFTKEGLVKQTAMNEFNTYRGYKTRTSNAIKLKTATDEVVAIELVPNQE 661 Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857 Q I V+ GFG R + + G++A ++ K + + + P + L + Sbjct: 662 QEIFIVTHCGFGLRYELSEVPVVGTVASGVKAINLRKDDFVAGAMVYSPESKVVSAFLAT 721 Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVE 895 +G++ R V E+ + +RA +G+++ K+ RVV ++ Sbjct: 722 QRGSVKRFNVLEVSMLTRAKRGLMVLRELKNNPHRVVYLD 761 >gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1] gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1] Length = 833 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 298/891 (33%), Positives = 486/891 (54%), Gaps = 121/891 (13%) Query: 21 ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCARISG 79 I D M+++Y+ YA++VI+GR++PD+RDGLKPV RRIL+ M + K Y K ARI G Sbjct: 13 IVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPYKKSARIVG 72 Query: 80 EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139 +V+GKYHPHG+AA+YD + RMAQD+ R LI+GQGNFGS+DGD PAA RYTE R+ K A Sbjct: 73 DVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYTEIRMTKIA 132 Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199 +L D+ KDTVDF PNYDGS +EP VL + PN+L+NG GIAVGMATNIP HNL EV+ Sbjct: 133 EEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIPPHNLKEVI 192 Query: 200 DGCVAVIDNP-------------------DI---DLDALMEIIRGPDFPTGAVILGRTGI 237 C+ ++ N DI + +M I++ PDFPTG +I+ I Sbjct: 193 KACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGGIIINSKDI 252 Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297 Y G GSI I+ K +++QI++TE+PY VNK+ ++ KIA+L + +I IA Sbjct: 253 PKIYRNGTGSIKIKA-----KIEVNKDQIIITELPYMVNKSDLIIKIADLSKSNKIQGIA 307 Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357 D++DES + R+VI+L++ +++LNQLY+YT L + FS N V + KP + ++ + Sbjct: 308 DIKDESTKD-IRIVIKLRKKTDPNIVLNQLYKYTQLTTTFSCNFVGIYKNKPYQLNILDL 366 Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417 L F++FR +++ RRT++LL K +++ H L GL IAV N+D V+II+ + N A ++L Sbjct: 367 LFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTAKNTTDATQKL 426 Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477 M++ L ++Q IL +RL RLT L + + NE Sbjct: 427 MKKYK--------------------------LDDIQVNEILNMRLQRLTSLEIEKLLNEY 460 Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535 I+ +IL+S + + +I EL ++ + R T++ + + + ++ I Sbjct: 461 QETKENIQTYKEILNSYDKQIELIINELHDLQKNYCKNDKRLTKLEDEDISFDIKNLIPD 520 Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST--HTSVLFFS 593 +++ + G++K+ +S + G++ + +++ + FI++T H +L F+ Sbjct: 521 NPVIIIYTDDGFIKKENIS-----KVTKTGKTTNLQKND---SAKFIINTTNHKKLLLFT 572 Query: 594 SLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 G +Y V+ +P GS ++G + N++ LN ++I I E+ ++N +V T Sbjct: 573 DTGKLYYLNVYDIPETGSGNSKGTHISNLIKLNTNDKIVLIRTQIH-ENEYSNYDMVCIT 631 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710 + G V+R L ++ + +++G + +KL+S D++L V +EN +L+ +K + + F I Sbjct: 632 EKGLVKRTSLEEY-KNSKNGSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNI 690 Query: 711 SAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769 + +R A R + GV G+ L + D+++ AI+ K M Sbjct: 691 NQVRTVA-RLAKGVVGMLLNNENDKIVDCAII-------------TKPM----------- 725 Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829 L+N + E + T++ KGF K T ++ + NR KG Sbjct: 726 -----LENPN-----------------EYLLCTITNKGFIKLTPLEEYSVQNRKTKGSYV 763 Query: 830 TDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKG 879 V+ LV + N + IL+++ G LI++ +N I + +R + G Sbjct: 764 MKVTNKTGEPILVQILAKNSKTNNCILITNTGQLIKIDINNISVTNRVSTG 814 >gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM 15952] gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM 15952] Length = 817 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 293/834 (35%), Positives = 471/834 (56%), Gaps = 59/834 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E++ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M Q G K Sbjct: 2 EKKHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKS 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G +MG YHPHG+++IY+A+ RM+QDW LR +LIE GN GS+DGDPPAA RY Sbjct: 62 FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + LL D+ K+TV+F N+D + +EP VL + +PN+LVNG GI+ G AT I Sbjct: 122 TEARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNLGEV+DG + +ID+PD L+ LM I GPDFPTG ++ G IK AY TG+G +++ Sbjct: 182 PTHNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGILQGADEIKKAYETGKGKVIL 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE+ G ++QIV++EIPY+VNKA +++++ E+ K+I IA++RDESDR G ++ Sbjct: 242 RSKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ +A+ ILN L++ T LQ ++ NMVA++ +P++ L +L ++VA R+ V++ Sbjct: 302 VVELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMRPKQVGLKQMLSSYVAHRQSVIL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR++Y L KA R H++ GL A++ LDEV++ IR S + A+ Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKN--------------- 406 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 +LI ++T + Q AI+ L+L RLT ++ E L I E I Sbjct: 407 -NLILAHAFT----------QEQAEAIVTLQLYRLTNTDITQLQQEAEELLATIAELQKI 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 + + L ++K+EL VK + + R T I + L ++ E + +ED++V V+ GYV Sbjct: 456 IQDSTELFKVMKKELREVKKQYQSERLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYV 515 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y A G M++ D V ++T +L + G + V LP Sbjct: 516 KRSSLRSYSASNNEEAG-----MKESDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPD 570 Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 + G+ L L +L E I T++P+ + ++ ++ T+ G ++R KLS+F Sbjct: 571 LRWKDVGEHLSQALTTLKIEENILTVLPYKQLSTTQE---LLILTQAGMIKRTKLSEFTP 627 Query: 668 INRSGK------IAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRV 715 R+ K I +K D+++SV E TQ DI + + +R+ ++ + V Sbjct: 628 W-RTYKTRPLPFITLK-QEEDKVISVMVIEPQEIATQ--DIFMVSNRAYGLRYAVTDVPV 683 Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775 R + GV+ ++L + D + AI++H D D + + A +R+++ + + + Sbjct: 684 VGPR-AAGVKAMNLKEDDATVVQAILVHTDGDTP--VVIITQRGAAKRMLAQELPQTSRA 740 Query: 776 KNDSSVEGNISEERCQELKL---KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 + V + + + + E +L ++KG K + F I++R+ G Sbjct: 741 QRGIMVLRELKNHPHRIIYMGLGDETELLLTNQKGDKKEVQANQFPIADRTSNG 794 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E ++ V+ +G+ KR+S + SN G++ +DV +V +N D ++L Sbjct: 502 QEDVMVVVTREGYVKRSSLRSYSASNNEEAGMKESDV--------VVYKGQLNTLDHLLL 553 Query: 856 VSDKGTLIRVPVNEI 870 V+DKG +I PV+E+ Sbjct: 554 VTDKGNMIYRPVHEL 568 >gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B] Length = 703 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 287/743 (38%), Positives = 419/743 (56%), Gaps = 104/743 (13%) Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--G 261 A+IDNP++ +D LM+ I GPDFPT A+I GR GI AY TGRG I +R S +E G Sbjct: 1 ALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVG 60 Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321 R+QIV+TE+PYQ+NKA ++EKIAELV+EK++ I +LRDESD+ G RVVIEL+RG + Sbjct: 61 GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPE 120 Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381 VILN LY T LQS+F +N+VAL +P L +L+AFV R EVV RRT + L KAR Sbjct: 121 VILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKAR 180 Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID------ 435 +R H+L G A+A++N+D V+ +I+ SP P A+ L++ W +S + ++++ Sbjct: 181 ERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRP 240 Query: 436 ---DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 D Y + +G +LS Q +AILELRL RLTGL + + E + +I E + IL+ Sbjct: 241 ENLDPQYGL-REGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILN 299 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 S +RL+ +I++EL ++ E RRT I++ LD+ D I E+ VVT+SH GY K P Sbjct: 300 SATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQP 359 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 L+VY+AQRRGGKG+S ++DED++ L + ++HT++L FSS G VY K + +P S Sbjct: 360 LAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRA 419 Query: 613 ARGKALINILSLNQGERITTIMPF----------------------PEDESSWNN----- 645 ARG+ L+N+L L+ GE ITT++P E+ S Sbjct: 420 ARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKAR 479 Query: 646 ---------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696 ++ +T +G V++ L F + SG IA++LD D ++S E +I Sbjct: 480 IKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEI 539 Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756 +L + G+ RF S +R GR + GVRG+ L +G ++ISM Sbjct: 540 MLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISML----------------- 581 Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816 I EE Q ILT SE+G+GKRT+ + Sbjct: 582 ----------------------------IPEEGSQ--------ILTASERGYGKRTAISE 605 Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876 F R G+G+ A ++ N G LV V D ++I+L+SD+GTL+R V E+ R Sbjct: 606 FPEYKRGGQGVIAMVSNERN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRN 663 Query: 877 TKGVVIFSTAKDERVVSVERIRE 899 T+GV + A DE++V +ER++E Sbjct: 664 TQGVTLIKLASDEKLVGLERVQE 686 >gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2] gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2] Length = 816 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 308/896 (34%), Positives = 470/896 (52%), Gaps = 93/896 (10%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G K + K A+ Sbjct: 10 LPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKGFRKSAKTV 69 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG+ ++YDA+ RM+QDW +R LL+E GN GS+DGDPPAA RYTE RL Sbjct: 70 GNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRYTEARLSAL 129 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 + LL D+ K TV+F PN+D + EP VL A YPN+LVNG GI+ G AT+IP H+L E+ Sbjct: 130 SSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDIPPHHLNEI 189 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +DG + +D PD +D LME I+GPDFPTG +I G GIK AY TGRG I++RG + E Sbjct: 190 IDGVILRMDKPDCSIDDLMEHIKGPDFPTGGIIQGVDGIKKAYETGRGKIIVRGKAEFED 249 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++KI E ++++ IA++RDE+DR G R+VIELK+ A Sbjct: 250 LRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRIVIELKKDA 309 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 + +L+ LY+ + LQ ++ NMVA++ P+ L +L A++ R+EVV RR+++ L Sbjct: 310 DPEGVLHYLYKNSDLQIPYNFNMVAIHNRHPKLMGLRELLDAYIGHRKEVVTRRSQFELQ 369 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA R H++ GL A++ LDEV+ IR S + A+ L+ + Sbjct: 370 KAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAK------------------ 411 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT +R E L I E IL S +L Sbjct: 412 --------FEFTEPQAEAIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSILESEKKLF 463 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK+EL VK RRTRI + +++ E + ED++VTV+ GYVKR + Sbjct: 464 SVIKKELRDVKKRFADERRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYVKRTSQRSF 523 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M+D D + ++T +L F++ G V +LP + G+ Sbjct: 524 AASNGQDFG-----MKDSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPDIRWKDLGQ 578 Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--I 674 + NI+ +++ E I +P + E+ Y++F TK+G V++ +L + + R K + Sbjct: 579 HIANIIPIDRNESIVRAIPVKDFETEE---YLLFMTKNGMVKKTELKAY-KAQRYSKPLV 634 Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734 A+ + DE+L V +I L T G + F + + R + GV+GI+L GD Sbjct: 635 AVNVKGTDEVLDVYLTDGTKEIFLATHQGFGLWFHEEEVSIVGAR-AAGVKGINLKDGDF 693 Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794 V A +LI E Sbjct: 694 V------------------------AGAQLIEDQKE------------------------ 705 Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854 Q ++ V+++G K+ +F ++R+ +G+ K N +V V ++ Sbjct: 706 ---QSVVIVTQRGSIKKMKLSEFERTSRAKRGVVMLRELKSNP-HRIVGCVIVRSKHELY 761 Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910 + ++KG + V V+ IR R + G I ++ + + R E VD++ TE Sbjct: 762 IETEKGHIEAVNVSSIRFNDRYSNGSFIIDESESGKAKCIWRAEVKE-VDDSHVTE 816 >gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442] gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442] Length = 806 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++QDW +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +I+GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSEYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LDEV+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVAGLMKALSILDEVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT + E L +I E IL S +LL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLL 462 Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E + T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+GI+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSP-VGVRAAGVKGINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+++ D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GRALNSEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + FR +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEV 797 Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + +N + DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKGINLKEDDYVASGRALNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 >gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989] gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989] Length = 827 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 266/737 (36%), Positives = 435/737 (59%), Gaps = 42/737 (5%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 ++E + + S+ D M + + Y+ +I RA+PD RDGLKPV RRIL+ M + G +N Sbjct: 3 EKEVKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYN 62 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128 K Y K A+ G V+G YHPHG++++YDA+ RM+Q+W + LI+ QGN GS+D DP AA Sbjct: 63 KPYHKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAM 122 Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188 RYTE RL + + FLL D+ KDTV++ PN+ EP VL AR+PN+LVNG GIA G AT Sbjct: 123 RYTEARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYAT 182 Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 NIP HNL EV+ + I +PD L+ LM+ ++GPDFPTG +++G GIK A+ TGRG + Sbjct: 183 NIPPHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVMGLDGIKQAFQTGRGRV 242 Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 +IR + + QI++ EIPY+V K+ +++KI E+ K+I I D+RDESDR G Sbjct: 243 LIRSKVEVVPLRTIK-QIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGL 301 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 R+V++LK+ ++ + ILN LY+ T LQ ++ N++A+ P + +L +L AF++ RE+V Sbjct: 302 RIVVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHREDV 361 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 V+RR+K+ L ++RAH+L GL AV+ +DE++ IIR S + A++ L++R Sbjct: 362 VIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIER-------- 413 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 +E Q AI+ +RL RLT +++ E L +I E Sbjct: 414 ------------------FDFTEKQAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELE 455 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLG 546 I+ +S L ++ +EL V E +TPR ++IV + + ++++ I +E+ ++TV+ G Sbjct: 456 KIIRDKSELHKVMVEELEKVNAEFNTPRLSKIVHEVKEIVIDEKAMISKEECMITVTRDG 515 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KRV + + A R +D D + T +++FF++ G V+++ Sbjct: 516 YIKRVSMRSFNASSDSMTQR-----KDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQI 570 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + G + N + ++ E+I ++ ++VV A++HG ++R +L +F Sbjct: 571 EEAKWKDLGGHISNYIKMDSSEKIIAAYVL---DAFKTGVHVVSASRHGMIKRTELKEF- 626 Query: 667 QINRSGK--IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVG 723 +++RS K MK+ DE++SV + +D ++L ++ G + +P+ I + + + S G Sbjct: 627 EVSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVILVSEQGYGLMYPVEQIPLVSNK-SKG 685 Query: 724 VRGISLAKGDQVISMAI 740 V+ ++LAK D V S+ I Sbjct: 686 VKAMNLAKDDCVASICI 702 Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +++ S G KRT +F +S RS K + + ++E+ ++ + +DQ+ILVS++ Sbjct: 609 VVSASRHGMIKRTELKEFEVS-RSNKTMTCMKIGGMDEMISVSLSY--KPDDQVILVSEQ 665 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894 G + PV +I + S +KGV + AKD+ V S+ Sbjct: 666 GYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASI 700 >gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis ATCC 700641] gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis ATCC 700641] Length = 817 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 279/731 (38%), Positives = 418/731 (57%), Gaps = 44/731 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G +K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K+TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G ++QIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+AD+ILN L++YT LQ ++ NMVA++ Y P + ++ IL +++A R +++V R++ Sbjct: 303 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A+ L Sbjct: 363 FDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENL----------------- 405 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 I D +E Q AI+ L+L RLT + E +L +I I+ Sbjct: 406 -----KISYD----FTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK PRR+ + + ++++ IV E+ V+V+ GY+KR Sbjct: 457 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + A G+ RD+D + + T +L F++LG V L + Sbjct: 517 PRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWK 571 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668 G+ L L+ Q E I F E + + AT+ G ++ R +LS + Sbjct: 572 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627 Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++S K A D D I++V E DI++ TK G +RF I + V G + GV+ I Sbjct: 628 RSKSTKYAKLKDQEDRIIAVAPVVLE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAI 685 Query: 728 SLAKGDQVISM 738 +L GDQV ++ Sbjct: 686 NLKDGDQVAAV 696 >gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596] gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596] Length = 819 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/739 (37%), Positives = 443/739 (59%), Gaps = 44/739 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +D P + +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA++ +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQT------------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 T SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 412 -------------TYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 + L+ ++K EL +K + TPRRT + + + ++ E + ED++V+V+ GYVKR Sbjct: 459 DEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609 Y A GK + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 519 TSQRSYAAS--NGK---ELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYR-PVHELPDI 572 Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + G + ++ S L+ GE I +++ P + +F TK+G +++ ++++ + Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDIP---AFTEEHRFLFVTKNGMTKQSLITNY-KP 628 Query: 669 NRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 R K +A+KL DE+L+V DI L TK G +R+PI+ I +G + GV+ Sbjct: 629 QRYSKSMMAIKLKDDDELLNVHLIDGTEDIFLATKNGYGLRYPITEIPE-SGARTAGVKA 687 Query: 727 ISLAKGDQVISMAIVLHAD 745 I+L + D+V+ IVL ++ Sbjct: 688 INLKQDDKVVG-GIVLSSN 705 >gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016] gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112] gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3] gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri MM4-1A] gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016] gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112] gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3] gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri MM4-1A] Length = 821 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/734 (38%), Positives = 429/734 (58%), Gaps = 43/734 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 6 IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDPPAA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTV+ N+D + +EP VL AR PN+LVNG GI+ G AT IPTHNL Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D + +I +P LD LME I GPDFPTG +I G GI+ AY TGRG +V+R + Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G R+QI VTEIPY+VNKA ++++I +L K++ IA+ RDE+DR G R+ IELK Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+A+ ILN L + T LQ ++ NMVA++ +P R L IL +++ F++E++ RRT+Y Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H++ GL A++ LD+V++ IR S N + A+ L+ + +N Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Q AI+ L+L RLT ++ E L I E IL++ + Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNEN 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++ +E+ ++K E PRRT+I + L+++ + + ED+VV VSH GY+KR + Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 ++A G +R++D+ + +T + + F++LG + + + + Sbjct: 520 RSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKD 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--- 670 G+ + + L E I M F + + ++ T G V++ +D+ +R Sbjct: 575 TGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYKS 631 Query: 671 SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +A+KL ++++V+ T EN LLT ++ G VR+ ++ + V G + GVR I Sbjct: 632 HASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPV-TGIRTAGVRAI 690 Query: 728 SLAKGDQVISMAIV 741 +L DQV +V Sbjct: 691 NLKDDDQVADQILV 704 Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT+S +G+ R D ++ G+RA ++ +++ + V D I +++ + Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQDIAVITQR 716 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887 G +PV+EI + +RA +G ++ K Sbjct: 717 GAFKEMPVDEIEVGARARRGELVLRRLK 744 >gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL B-30929] gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL B-30929] Length = 812 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/740 (37%), Positives = 431/740 (58%), Gaps = 47/740 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S+++ D M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A Sbjct: 4 IESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL RM+QDW +R LIE GN GS+DGDPPAA RYTE RL Sbjct: 64 KSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTVD+ N+D + EP VL +R+PN+LVNG GI+ G AT+IP HNL Sbjct: 124 SKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + + +PD LD LM+ ++GPDFPTGA++ G GIK AY TG G I++R + Sbjct: 184 GEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGHGKIIVRSKTS 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++ QIV+TEIPY+VNKA ++++I E+ K+I I+++RD+SDR G +V+ELK Sbjct: 244 IEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ILN L++ T LQ ++ NMVA++ +PER +L IL A++ F++EV+ +RTKY Sbjct: 304 RDVDSKGILNYLFKNTDLQVSYNFNMVAISHMRPERLSLKKILVAYLEFQQEVIEKRTKY 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+DR H++ GL A++ LD+V++ IR S N + AR L++ Sbjct: 364 NLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVK---------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q AI+ L+L RLT ++ NE L EI + IL+S Sbjct: 408 ----------TYDFSEKQADAIVALQLYRLTNTDVTELENEHQHLADEITKDNKILNSPK 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVR-EDMVVTVSHLGYVKRVPL 553 L ++ EL ++ + RRT I + D++ + D ++ ED++V VSH GY+KR + Sbjct: 458 ELNRVLANELRALAKTYRSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRSSI 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+A + ++DED+ + ++ + F++ G + V+ L + Sbjct: 518 RSYKA------STTDTGLKDEDYPIFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKD 571 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G+ + + L+ E I F D +++ AT G+V++ +D ++ R+ K Sbjct: 572 TGEHISQTIGLDADEEIIGTYAF--DSLKQPGTFLI-ATDQGHVKQTGFAD-MKPGRTYK 627 Query: 674 ----IAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 KL + DE I ++T +LL + G +R+ I + V R + GV+ Sbjct: 628 SHAYTYEKLKTADERVVAIHYLKTPATAGQMLLISNNGLALRYGIDEVPVNGAR-TTGVK 686 Query: 726 GISLAKGDQVISMAIVLHAD 745 + L D+V ++ +V D Sbjct: 687 SMGLRGVDKVTNLQLVSEDD 706 >gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23] gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23] Length = 821 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/734 (38%), Positives = 429/734 (58%), Gaps = 43/734 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + K A Sbjct: 6 IEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL R++QDW LR LIE GN GS+DGDPPAA RYTE RL Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L D+ KDTV+ N+D + +EP VL AR PN+LVNG GI+ G AT IPTHNL Sbjct: 126 SKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D + +I +P LD LME I GPDFPTG +I G GI+ AY TGRG +V+R + Sbjct: 186 SEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRAKTE 245 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G R+QI VTEIPY+VNKA ++++I +L K++ IA+ RDE+DR G R+ IELK Sbjct: 246 IETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELK 305 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 RGA+A+ ILN L + T LQ ++ NMVA++ +P R L IL +++ F++E++ RRT+Y Sbjct: 306 RGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQY 365 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA+ R H++ GL A++ LD+V++ IR S N + A+ L+ + +N Sbjct: 366 NLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLV-KEYN------------ 412 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 + Q AI+ L+L RLT ++ E L I E IL++ + Sbjct: 413 -------------FTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILTNEN 459 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++ +E+ ++K E PRRT+I + L+++ + + ED+VV VSH GY+KR + Sbjct: 460 ELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSI 519 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 ++A G +R++D+ + +T + + F++LG + + + + Sbjct: 520 RSFKASEAEENG-----LREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADARWKD 574 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--- 670 G+ + + L E I M F + + ++ T G V++ +D+ +R Sbjct: 575 TGEHISQTIGLADNEEIIKAMIFDKLDQPGT---IIMGTSDGQVKQTAFNDYKPGSRYKS 631 Query: 671 SGKIAMKLDSRDEILSVE--TCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +A+KL ++++V+ T EN LLT ++ G VR+ ++ + V G + GVR I Sbjct: 632 HASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPV-TGIRTAGVRAI 690 Query: 728 SLAKGDQVISMAIV 741 +L DQV +V Sbjct: 691 NLKDDDQVADQILV 704 Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859 +LT+S +G+ R D ++ G+RA ++ +++ + V D I +++ + Sbjct: 660 LLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQIL---VKDGQNIAVITQR 716 Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK 887 G +PV+EI + +RA +G ++ K Sbjct: 717 GAFKAMPVDEIEVGARARRGELVLRRLK 744 >gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17] gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4] gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4] gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17] Length = 806 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 297/829 (35%), Positives = 463/829 (55%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++QDW +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +I+GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSEYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LDEV+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVAGLMKALSILDEVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT + E L +I E IL S +LL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAILQSEKKLL 462 Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E + T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+GI+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSP-VGVRAAGVKGINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+++ D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GRPLNSEKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + FR +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEV 797 Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N + DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKGINLKEDDYVASGRPLNSEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 >gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1259 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/788 (37%), Positives = 436/788 (55%), Gaps = 97/788 (12%) Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG GGIAVGMATNI Sbjct: 551 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL E+ + +DN + D L A+ E ++GPDFPT +I+G GI +AY TGRG Sbjct: 611 PPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGSQGIHDAYTTGRG 670 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DR 305 SI +RGV IE+ S R IV+TE+PYQVN + IAE VR+ R+ IA++ D+S DR Sbjct: 671 SIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSDR 730 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+E+KR A A V+LN LY++T LQ+ F NM+++ P L +++ +VA + Sbjct: 731 VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAHQ 790 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V+VRRT Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 791 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR----------- 839 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LI+L+D + E+Q +AIL+++L RL L R I ++L + EI Sbjct: 840 --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 884 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+ R GI++ EL + D+ RRTRIV D+ DED I RED+VVT++ Sbjct: 885 DLEDILAKPERQRGIVRDELTEIVDKHGDDRRTRIVAADGDVNDEDLIAREDVVVTITET 944 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + Sbjct: 945 GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYE 1004 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ + N+L+ ERI ++ E + Y+V AT++G V++ KL+DF Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDA---PYLVLATRNGLVKKTKLTDF 1061 Query: 666 IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722 NRSG I A+ L DE++ C+ E D+LL + GQ +RF + A+R GR + Sbjct: 1062 -DSNRSGGIVAINLRDNDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPM-GRATS 1119 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ D Y+ ++ R E Sbjct: 1120 GVQGMRFNTDD--------------------YLLSLNVVR-------------------E 1140 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 G ++L + G+ KRT+ ++ + R GKG+ + G LV Sbjct: 1141 GT--------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDR--RRGKLV 1184 Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900 V+D+ ++ ++ G +IR ++R A R TKGV + + +D ++++ R E Sbjct: 1185 GALIVDDDSELYAITSGGGVIRTDARQVRKAGRQTKGVRLMNLGEDNTLLAIARNAEENA 1244 Query: 901 -EIVDEAE 907 E+V+EAE Sbjct: 1245 DEVVEEAE 1252 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/130 (54%), Positives = 89/130 (68%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + E I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 61 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120 Query: 121 DGDPPAAERY 130 DPPAA RY Sbjct: 121 GNDPPAAMRY 130 >gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98] Length = 807 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/836 (35%), Positives = 467/836 (55%), Gaps = 52/836 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKPFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++QDW +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ II+GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNCTVDDLLAIIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+VIELK+ A Sbjct: 249 IRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVIELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQITYNFNMVAINNRRPTLMTLPNILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ L+ + Sbjct: 369 KAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAK------------------ 410 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 +E Q AI+ L+L RLT + NE L +I IL+S +LL Sbjct: 411 --------FSFTEAQAEAIVSLQLYRLTNTDITALENEAEELNQKITTLQAILNSEKKLL 462 Query: 499 GIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR+ + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKADLKRVKKTYSDERRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E + T++P E+E +VVF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETLIWATVVPNFEEEKR----FVVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L K D Sbjct: 634 VAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFDEEEVSP-VGVRAAGVKAINL-KED 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 ++ L+++ D + + A +RL + + E+ T K + + + Sbjct: 692 DYVAAGKPLNSEKD---QFMLVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845 E+ ++ + +EK + FR +R G DV NE G +V + Sbjct: 749 GIEVIRDDELVYMKTEKQIVEEIDPKTFRNKDRYSNGSLVLDV---NETGEVVETW 801 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + A P+N + DQ +LV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVAAGKPLNSEKDQFMLVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E IR+ E+V Sbjct: 737 FKELKRNPYRIVGIEVIRDDELV 759 Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 8/75 (10%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E I+TV+++G+ KRT SN G++ DV L+ F N + ++L Sbjct: 501 QEDVIVTVTKEGYVKRTGWRSHNASNGKDFGMKEGDV--------LLERFDTNTTETVLL 552 Query: 856 VSDKGTLIRVPVNEI 870 ++KG I +PV E+ Sbjct: 553 FTNKGNYIYLPVYEM 567 >gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/727 (38%), Positives = 419/727 (57%), Gaps = 44/727 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G +K Y K A Sbjct: 4 IQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE RL Sbjct: 64 KSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 + A +LL D+ K+TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HNL Sbjct: 124 SEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 184 AEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTD 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G ++QIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IELK Sbjct: 244 IEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+AD+ILN L++YT LQ ++ NMVA++ Y P + ++ IL +++A R +++V R+++ Sbjct: 304 KDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSRF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 364 DKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDA-KENLKVSYD------------ 410 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E Q AI+ L+L RLT + E +L +I I+ Sbjct: 411 -------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDER 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 + ++K+EL VK PRR+ + + ++++ IV E+ V+V+ GY+KR Sbjct: 458 TMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTSP 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 + A G+ RD+D + + T +L F++LG + L + Sbjct: 518 RSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKD 572 Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI- 668 G+ L L+ Q E I F E + + AT+ G ++ R +LS + Sbjct: 573 IGEHLSQTLTNFEQEEEIL----FAEVVDQFEGVTYFAATQQGQIKRFERKELSPWRTYR 628 Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728 ++S K A D D I++V E DI++ TK G +RF I + V G + GV+ I+ Sbjct: 629 SKSTKYAKIKDQEDRIVAVAPVVFE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAIN 686 Query: 729 LAKGDQV 735 L GDQV Sbjct: 687 LKDGDQV 693 >gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus parasanguinis ATCC 903] gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus parasanguinis ATCC 903] Length = 817 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/728 (38%), Positives = 419/728 (57%), Gaps = 44/728 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G +K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K+TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G ++QIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+AD+ILN L++YT LQ ++ NMVA++ Y P + ++ IL +++A R +++V R++ Sbjct: 303 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT + E SL +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK PRR+ + + ++++ IV E+ V+V+ GY+KR Sbjct: 457 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + A G+ RD+D + + T +L F++LG + L + Sbjct: 517 PRSFNASTLEEVGK-----RDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWK 571 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668 G+ L L+ Q E I F E + + AT+ G ++ R +LS + Sbjct: 572 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627 Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++S K A D D I++V E DI++ TK G +RF I + V G + GV+ I Sbjct: 628 RSKSTKYAKLKDQDDCIVAVAPVVLE-DIMIITKNGYGLRFNIEEVPV-VGAKAAGVKAI 685 Query: 728 SLAKGDQV 735 +L GDQV Sbjct: 686 NLKDGDQV 693 >gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161] gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818] gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900] gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900] gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818] Length = 819 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 >gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367] gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367] Length = 815 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 285/761 (37%), Positives = 428/761 (56%), Gaps = 48/761 (6%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +++ + M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + Sbjct: 3 EGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGF 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A+ G VMG +HPHG+++IY+AL RM+QDW +R L+E GN GS+DGDP AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTV+ N+D + EP VL AR+PN+LVNG GI+ G AT IP Sbjct: 123 EARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVD + ++ +P L+ LM ++GPDFPTG +I G+ GI AY TGRG IV+R Sbjct: 183 PHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE G++ QI VTEIPY+VNKA +++KI E+ K++ +A++RDE+DR G R+ Sbjct: 243 SKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIA 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A A +LN L++ T LQ ++ NMVA+N +PE L IL A++ + V+ + Sbjct: 303 IELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVITK 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DR H++VGL A++ LD+V++ IR S + AR L++ A D Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----AYD----- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SE Q AI+ L+L RLT + E L EI++ IL Sbjct: 414 -----------------FSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVK 549 + L +++QEL +V + PRRT I + D++ + + ED+VV VSH GY+K Sbjct: 457 AEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + Y A G ++D D+ + +ST ++ F+S G + V + Sbjct: 517 RSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDV 571 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666 + G+ + + L E I F + L AT G +++ +D Sbjct: 572 KWKETGEHISQTIGLAADEEIVATFAFKTLKEPGRFL---IATSDGYIKQTAFADLTPGR 628 Query: 667 QINRSGKIAMKLDSRD-EILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + KL + + +++V+ T+ E ILL +K G +R+P+ + V R + G Sbjct: 629 TYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TTG 687 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764 VR + L D+V+++A+V +E I + A +RL Sbjct: 688 VRSMDLRDDDEVVNLALVTD-----NETIALITQRGAFKRL 723 Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 3/91 (3%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 EQ IL +S+ G+ R + ++ G+R+ D+ +E+ V + V DN+ I L+ Sbjct: 658 EQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEV---VNLALVTDNETIALI 714 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + +G R+ + E+ + SRA +GV++ K Sbjct: 715 TQRGAFKRLAMKELSVTSRARRGVIVLRELK 745 >gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e] gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561] gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S] gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578] gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923] gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e] gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes] gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578] gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923] Length = 819 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust. Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 10/248 (4%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 N +V TK G V+R + N ++AMK D + ++ + +LL T G Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559 Query: 704 QCVRFPISAIRVFAGRN---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH-MS 759 + P+ + +N V L+ G+++ S AI + A + + K+ M+ Sbjct: 560 NFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS-AIAIQAFTEEKRFLFVTKNGMT 618 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 Q + + + + ++G+ E L + I ++ G+G R S + Sbjct: 619 KQSAITNYKPQRYSKSMMAIKLKGD-DELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE 677 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 S G++A ++ + + + + + P N+ I+L + +G+L ++ +E SRA +G Sbjct: 678 SGARTAGVKAINLKQDDIVIGGIVLMP-NEQKHILLATQRGSLKQMKASEFEPISRAKRG 736 Query: 880 VVIFSTAK 887 +++ K Sbjct: 737 LLMLRELK 744 >gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 819 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/745 (37%), Positives = 443/745 (59%), Gaps = 49/745 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +D P + +M+I++GPDFPTG +I G GI+ AY TG+G IV+R Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA++ +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Q +++ Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 SE Q AI+ L+L RLT ++++E L +I IL Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 S L+ ++K EL +K + TPRRT + + + ++ E + ED++V+V+ GYVKR Sbjct: 459 DESELIAVLKSELADIKKKYKTPRRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYVKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609 Y A + + M++ D + +++ ++L F+S G F+Y+ V LP Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYR-PVHELPDI 572 Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + G + ++ S L+ GE I + I F E++ +F TK+G +++ ++++ Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAIQTFTEEKR------FLFVTKNGMTKQSAITNY 626 Query: 666 IQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + R K +A+KL DE+LSV DI L T+ G +R+PI+ I +G + G Sbjct: 627 -KPQRYSKSMMAIKLKDNDELLSVNLIDGTEDIFLATRNGYGLRYPIAEIPE-SGARTAG 684 Query: 724 VRGISLAKGDQVISMAIVLHADADY 748 V+ I+L + D VI I+ D + Sbjct: 685 VKAINLKQDDIVIGGVILAPNDTKH 709 >gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes Clip81459] gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194] gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175] gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017] gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194] gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017] Length = 819 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 >gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071] gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071] Length = 819 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust. Identities = 51/248 (20%), Positives = 107/248 (43%), Gaps = 10/248 (4%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 N +V TK G V+R + N ++AMK D + ++ + +LL T G Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559 Query: 704 QCVRFPISAIRVFAGRN---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH-MS 759 + P+ + +N V L+ G+++ S AI + A + + K+ M+ Sbjct: 560 NFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS-AIAIQAFTEEKRFLFVTKNGMT 618 Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819 Q + + + + ++G+ E L + I ++ G+G R S + Sbjct: 619 KQSAITNYKPQRYSKSMMAIKLKGD-DELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE 677 Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879 S G++A ++ + + + + + P N+ I+L + +G+L ++ +E SRA +G Sbjct: 678 SGARTAGVKAINLKQDDIVIGGIVLMP-NEQKHILLATQRGSLKQMKASEFEPISRAKRG 736 Query: 880 VVIFSTAK 887 +++ K Sbjct: 737 LLMLRELK 744 >gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp. YO3AOP1] gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp. YO3AOP1] Length = 793 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 300/893 (33%), Positives = 473/893 (52%), Gaps = 122/893 (13%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+ NK Y K A Sbjct: 4 IKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ GE +GK+HPHG+A++YDAL RMAQD+++R LIEGQGNFGS+DGDPPAA RYTE RL Sbjct: 64 RVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K A +L+D+ K+TVD PN+D S +EP VL +++PN++ NG GIAVG+AT+IP HN Sbjct: 124 TKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPHNF 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254 EV + + + PD ++ L I+GPDFPTG VI + + + Y + RGSI I+G + Sbjct: 184 TEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKGKA 243 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G+R++IV+ EIPYQVNK +++KIAELVR + I+DLRDESDR G R+VIEL Sbjct: 244 RIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVIEL 303 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 KR A A+ +L +LY+ T L+ F VN+ L +P L +L+ F+ R E++ RRT Sbjct: 304 KRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRRTL 363 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + L KA +R H++ GL A+ N D+V+ I+R S + AR +L+ +N Sbjct: 364 FELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQAR-QLLTSQFN----------- 411 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 LSE Q AIL++RL+R T L +++E L +I+ ILSS Sbjct: 412 --------------LSETQANAILDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSD 457 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554 + + + +E + + R+T I +++ +E + + + G + Sbjct: 458 NEKIKVFIEETDELVRKYGDQRKTTIAT------EKELTFKEHFMFAILNTGRIVN---- 507 Query: 555 VYRAQRRGGKG--------RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+ + K + + + + + + V + FF+ G Y W L Sbjct: 508 -YKVEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAY----WSL 562 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 I P+ K +NI +GE + T + E N ++++ TK G ++R D I Sbjct: 563 VIDLPKGEDK--LNI----EGEIVGTAY---QGEGEENRVFLI--TKKGIIKRMSDED-I 610 Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 G M L+ DE++ + I + TK + F + +R+ G + GV Sbjct: 611 FYKSQGHTVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVRI-TGDKAKGVEA 669 Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 I L + D+ ++ A L+ Sbjct: 670 IDLDENDE-VAGAFFLNG------------------------------------------ 686 Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846 +++L + G+ K +F I R+ KG+ A K+N+ +V++ P Sbjct: 687 ----------HEYLLISTSFGYMKLVEKTEFPIKKRAQKGLLAV---KLNKDDYVVSILP 733 Query: 847 VNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897 VN +D++++ + G L+++ +++ I + R + G +F D R+V+V ++ Sbjct: 734 VNKSDEVLINTKHGKLLKLKIDKETIPVEKRTSLGKNLFKFEAD-RIVNVLKL 785 >gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei 23K] gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K] Length = 821 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 279/739 (37%), Positives = 420/739 (56%), Gaps = 44/739 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 +E + I +++ + M + + Y+ +I RA+PD+RDGLKPV RRIL+ M G ++K Sbjct: 3 DEAQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKG 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G VMG +HPHG+++IY+A+ R++QDW LR LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K A +L D+ K TVDF N+D + +EP VL AR+PN+LVNG GI+ G AT I Sbjct: 123 TEARLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNLGEV DG V +ID+PD L+ +M ++GPDFPTG ++ G GIK AY TGRG +V+ Sbjct: 183 PPHNLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGILQGLDGIKKAYETGRGRVVV 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + I++ G+REQIV++EIPY+VNKA M++KI EL K++ I+++RDESDR G V Sbjct: 243 RAKTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSV 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 VIELK+ A + ILN L++ T LQ ++ NMVA++ +P++ L+ IL A++ +EEVV Sbjct: 303 VIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLEILHAYLKHQEEVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RRT+Y L KA+DR H++ GL A++ LD+V+ IR S N + A+ L+ Sbjct: 363 RRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLV------------ 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 + Y +E Q AI+ L+L RLT + E L + I Sbjct: 411 ------AQYD--------FTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAVAGYQAI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 L + L +IK EL SV R+T I + L+++ ++ E ++V VSH GY+ Sbjct: 457 LGNPKELARVIKAELKSVVKAYRNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYL 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L Y+A G +++ DF + T ++ F++ G + + V + Sbjct: 517 KRSSLRSYQASEGADGG-----LKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIAD 571 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-- 666 + G+ + + L E I F +E S Y V T G +++ D + Sbjct: 572 LKWKEMGEHISQSIGLAADEAIIAAFSFTPNEQSG---YFVIGTTDGYIKQTAFQDLLPS 628 Query: 667 QINRS-GKIAMKLDSRDEILSV----ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721 + RS + +KL + + +V ET Q+ I + G + F ++ + V +G + Sbjct: 629 RTYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALNEVSV-SGAKA 687 Query: 722 VGVRGISLAKGDQVISMAI 740 GV+ + L GD V + + Sbjct: 688 GGVKLMDLKDGDHVANFTL 706 Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849 E ++Q I + S G+G + + +S G++ D+ + + P Sbjct: 653 VSETDAQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDGDHVANFTLFDPAEK 712 Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERI 897 + + +++ +G R+ ++E+ + SRA +GV+I K RV ++ R+ Sbjct: 713 HAAVAIITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPHRVAAMVRV 762 >gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis] Length = 815 Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/738 (37%), Positives = 420/738 (56%), Gaps = 43/738 (5%) Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71 E + I +++ + M + + Y+ ++I RA+PD+RDGLKPV RRILF M + G ++K + Sbjct: 3 EGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGF 62 Query: 72 VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131 K A+ G VMG +HPHG+++IY+AL RM+QDW +R L+E GN GS+DGDP AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRYT 122 Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 E RL K A +L D+ KDTV+ N+D + EP VL AR+PN+LVNG GI+ G AT IP Sbjct: 123 EARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVD + ++ +P L+ LM ++GPDFPTG +I G+ GI AY TGRG IV+R Sbjct: 183 PHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVVR 242 Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311 + IE G++ QI VTEIPY+VNKA +++KI E+ K++ +A++RDE+DR G R+ Sbjct: 243 SKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRIA 302 Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371 IELKR A A +LN L++ T LQ ++ NMVA+N +PE L IL A++ + V+ + Sbjct: 303 IELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVITK 362 Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431 RT+Y L KA DR H++VGL A++ LD+V++ IR S + AR L++ A D Sbjct: 363 RTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----AYD----- 413 Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 SE Q AI+ L+L RLT + E L EI++ IL Sbjct: 414 -----------------FSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKIL 456 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLGYVK 549 + L +++QEL +V + PRRT I + D++ + + ED+VV VSH GY+K Sbjct: 457 AEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYLK 516 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609 R + Y A G ++D D+ + +ST ++ F+S G + V + Sbjct: 517 RSGVRSYTASDPTDNG-----LKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISDV 571 Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666 + G+ + + L E I F + L AT G +++ +D Sbjct: 572 KWKETGEHISQTIGLAADEEIVATFAFKTLKEPGRFL---IATSDGYIKQTAFADLTPGR 628 Query: 667 QINRSGKIAMKLDSRD-EILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + KL + + +++V+ T+ E ILL +K G +R+P+ + V R + G Sbjct: 629 TYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGAR-TTG 687 Query: 724 VRGISLAKGDQVISMAIV 741 VR + L D+V+++A+V Sbjct: 688 VRSMDLRDDDEVVNLALV 705 Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%) Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856 EQ IL +S+ G+ R + ++ G+R+ D+ +E+ V + V DN I L+ Sbjct: 658 EQGILLISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEV---VNLALVTDNKTIALI 714 Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887 + +G R+ + E+ + SRA +GV++ K Sbjct: 715 TQRGAFKRLAMKELSVTSRARRGVIVLRELK 745 >gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405] gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405] Length = 835 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 276/728 (37%), Positives = 418/728 (57%), Gaps = 44/728 (6%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G +K Y K Sbjct: 21 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 80 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 81 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 140 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K+TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 141 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 200 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 201 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 260 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IE+ G ++QIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 261 EIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 320 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+AD+ILN L++YT LQ ++ NMVA++ Y P + ++ IL +++A R +++V R++ Sbjct: 321 KKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARSR 380 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 381 FDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADA-KENLKVSYD----------- 428 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT + E SL +I I+ Sbjct: 429 --------------FTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDE 474 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK PRR+ + + ++++ IV E+ V+V+ GY+KR Sbjct: 475 RTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRTS 534 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + A G+ RD+D + + T +L F++ G + L + Sbjct: 535 PRSFNASTVEEVGK-----RDDDELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWK 589 Query: 613 ARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668 G+ L L+ Q E I F E + + AT+ G ++ R +LS + Sbjct: 590 DIGEHLSQTLTNFEQEEEIL----FAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 645 Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 ++S K A D D I++V E DI++ TK G +RF + + V G + GV+ I Sbjct: 646 RSKSTKYAKLKDQDDRIVAVAPVVLE-DIMIITKNGYGLRFNVEEVPV-VGAKAAGVKAI 703 Query: 728 SLAKGDQV 735 +L GDQV Sbjct: 704 NLKDGDQV 711 >gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus M045] gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus M045] Length = 817 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/749 (39%), Positives = 425/749 (56%), Gaps = 62/749 (8%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ E+ I + + DEMQ S+L YA +VI RA+PD RDGLKPVHRRI++ M +MG+ + Sbjct: 12 DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPD 71 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA Sbjct: 72 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAA 131 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ +A + + + +DTVDF PNYDG QEPV L A +PN+LVNG GIAVGMA Sbjct: 132 MRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+ +I P+ DLDALM+ + GPD PTG I+G +GI++AYA+GRG+ Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDAYASGRGT 251 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306 IR I+ + R+ +VVTE+P+ V ++ KI +LV K+I IAD++D +DR+ Sbjct: 252 FKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDREH 311 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T+++ F +N VAL +P L +L+ ++ R Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RR+++ K RDR H++ GL A+ ++DEV+R+IR S N A+ L++R Sbjct: 372 DVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIER------ 425 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+VQT+ IL+ L RLT R ++ +E L EI E Sbjct: 426 --------------------FALSDVQTQYILDTPLRRLTKFDRIELESEKERLNAEIAE 465 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-------LLDMEDEDCIVREDMV 539 IL S + L ++ EL +V + T RRT ++E L + D+ C Sbjct: 466 LTRILDSDAELRKLVSAELAAVSKKFGTDRRTVLLESSGAPAAVPLQVADDPC------R 519 Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599 V +S G + R + A GKGR D + + V +S G + Sbjct: 520 VLLSSTGLLARTADANPFAD--DGKGRR----VKHDLIVSAVPATARGEVGVVTSAGRLL 573 Query: 600 KEKVWRLP-----IGSPQARGKA-LINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 + V LP G+P G A L +SL+ E + + DESS + T+ Sbjct: 574 RVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTL--DESSPG---LALGTE 628 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712 G V+R + D+ N+ + L D I+ + E T E D++ T Q +R+ S Sbjct: 629 QGVVKR-VVPDYPS-NKEELEVITLKEGDRIVGAAELRTGEEDLVFITDDAQLLRYQASQ 686 Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV GI L +G +VIS V Sbjct: 687 VRP-QGRPAGGVAGIKLTQGAKVISFTAV 714 >gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7] gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7] Length = 817 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 270/735 (36%), Positives = 430/735 (58%), Gaps = 45/735 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I +++ + M + + Y+ +I RA+PD+RDGLKPV RRIL+ M G +K + K A Sbjct: 7 IQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKGFRKSA 66 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G V+G YHPHG++++Y+A+ R++QDW R +LIE GN GS+DGDPPAA RYTE RL Sbjct: 67 KTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRYTEARL 126 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + L+ D+ K+TVDF N+D + +EP V A YPN+LVNG GI+ G AT+IP+HNL Sbjct: 127 SKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPSHNL 186 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D V +ID+PD + LM+ ++GPDFPTGA++ G GIK AY TG+G I++R + Sbjct: 187 GEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAILQGVDGIKKAYETGKGKIIVRSKTR 246 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE+ G +EQIV+ EIPY+VNKA ++ K+ E+ KR+ IA++RDESDR G ++V+ELK Sbjct: 247 IEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQIVVELK 306 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 + A+A ILN L + T LQ ++ NMVA++ +P++ ++ +L+A++ ++EV+ RRT Y Sbjct: 307 KEANAGGILNYLLKNTDLQVAYNFNMVAIDKKRPKQVGIVRMLQAYLDHKQEVITRRTNY 366 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA R H++ GL A++ LD+V+ IR S + + A+ L++R Sbjct: 367 NLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIER--------------- 411 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 +E+Q AI+ L+L RLT + NE ++L +I IL S Sbjct: 412 -----------FDFTEIQAEAIVSLQLYRLTNTDITALENEADALNKDIMAYNKILGSSQ 460 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++K+EL+ VK + +PR T I + + L ++ E I E+++V+V+ GY+KR L Sbjct: 461 ELNKVMKKELIEVKKKYASPRLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYIKRTSL 520 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y A + G +++ D+ + ++T +L F+S G + + + + Sbjct: 521 RSYSASKPTEIG-----IKEGDYPIYIQQLNTLNHLLIFTSKGNIIYRPIHEISDLRWKD 575 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673 G L ++ E + + E F TK G +++ +S+++ I R+ K Sbjct: 576 MGDHLSQNIAFETDETVVKVFGL---EKQLPPATFTFITKEGYIKQTAVSEYV-IGRNYK 631 Query: 674 ----IAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 A+KL + DE+L++ + D+ L T G +R+P+ + G + GV+ Sbjct: 632 NKSFSAIKLKTTTDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEVPT-VGAKAAGVKS 690 Query: 727 ISLAKGDQVISMAIV 741 I+L GD V++ +V Sbjct: 691 INLKDGDYVVNGVLV 705 >gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302] gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302] Length = 825 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 310/899 (34%), Positives = 489/899 (54%), Gaps = 113/899 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIV+TEIPY++NKA +++KI E+ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ +++LN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R++ Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT ++ E L +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK + TPR + + +++++ I ED V+V+ GY+KR Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610 + A G+ RD+D + LF+ S T+ +L F++LG V ++R P+ Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--LFVQSVKTTQHLLIFTTLGNV----IYR-PVHE 564 Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660 L +I + GE ++ TI F +E +++ F AT+ G ++R Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEVIYVEVVDQFDDATTYFAATRLGQIKRV 617 Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + +F ++S K A D D+I++V + +D+LL ++ G +RF I + V Sbjct: 618 ERKEFSPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVLLISRNGYALRFNIEEVPVI 676 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 G + GV+ ++L K D VI A + + + Y + H + +R+ EEI Sbjct: 677 -GAKAAGVKAMNL-KADDVIQAAFICNTSSFY-----LLTHRGSLKRV---SIEEIP--- 723 Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++ N + +ELK K + VSE+GF Sbjct: 724 --ATSRANRGLQVLRELKSKPHRVFLAGAVSEQGF------------------------- 756 Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +G L + V D +Q +++ S+ GT + ++ ++ R + G I T DE V Sbjct: 757 ----VGDLFST-EVEDGEQTLVIQSNNGTTYEAILQDLNLSERTSNGSFISDTISDEEV 810 >gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC 8290] gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC 8290] Length = 812 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 273/735 (37%), Positives = 429/735 (58%), Gaps = 45/735 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++S+ D M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A Sbjct: 4 IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL RM+Q+W +R LIE GN GS+DGDPPAA RYTE RL Sbjct: 64 KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVD+ N+D + EP VL +R+PN+LVNG GI+ G AT+IP HNL Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + + +P LD LM+ ++GPDFPTGA++ G GIK AY TGRG +++R + Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++ QIVV+EIPY+VNKA ++++I EL KR+ I+++RD+SDR+G +VIELK Sbjct: 244 IESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ILN L++ T LQ ++ NMVA++ +PER +L IL +++ F+ EV+ +RT++ Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRTQF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DR H++ GL A++ LD+V++ IR S N + AR L++ Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q+ AI+ L+L RLT + E L +I IL+ Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++ +EL ++ PRRT I + + + + + I ED+VV VSH GY+KR + Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+A +G ++DED+ + ++ + F+S G + ++ + + Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670 G+ + + L+ E I F + L+++ AT G+++R KL+D + Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAFSSLKEK--GLFLI-ATDDGHIKRTKLTDLAPGRTYKK 628 Query: 671 SGKIAMKL-DSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + KL D + I++++ +LL +KLG +R+ I + + R + GV+ Sbjct: 629 HAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687 Query: 727 ISLAKGDQVISMAIV 741 +LA GD + ++ +V Sbjct: 688 QNLADGDVITNLQLV 702 >gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736] gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736] Length = 818 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 292/750 (38%), Positives = 423/750 (56%), Gaps = 63/750 (8%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ E+ I + + DEMQ S+L YA +VI RA+PD RDGLKPVHRRI++ M +MG+ Sbjct: 12 DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRPE 71 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA Sbjct: 72 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAA 131 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ +A + D + +DTVDF PNYDG QEPV L A +PN+LVNG GIAVGMA Sbjct: 132 MRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+ +I +P+ DLDALM+ + GPD PTG I+G +GI++AY TGRG+ Sbjct: 192 TNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIVGLSGIRDAYETGRGT 251 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306 +R +E + R+ +VVTE+P+ V ++ KI +LV K+I IAD++D +DR Sbjct: 252 FKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDRAH 311 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T+++ F +N VAL +P L +L+ ++ R Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RR+++ K RDR H++ GL A+ ++DEV+R+IR S N A++ LM++ Sbjct: 372 TVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQ------ 425 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+VQT+ IL+ L RLT R ++ E + L EI+E Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELETEKDRLNAEIEE 465 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538 IL S + L ++ EL +V + T RRT ++E L + D+ C Sbjct: 466 LTRILESDAELRKLVSSELATVAKKFGTDRRTDLLESGGAPVATVPLQVADDPC------ 519 Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598 V +S G + R A+ G K D + + + +S G + Sbjct: 520 RVLLSSTGLLARTANGEPFAENAGAK------RVKHDVIVSAVPATARGEIGAVTSAGRL 573 Query: 599 YKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652 + V LP + +P A G L LSL E + + DESS + T Sbjct: 574 LRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTL--DESSPG---LAIGT 628 Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711 + G V+R + D+ ++ + L D I+ +VE T + D++ T Q +R+ S Sbjct: 629 EQGVVKR-VVPDYPSHKEELEV-ITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYQAS 686 Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +R GR + GV GI LA+G +VIS V Sbjct: 687 VVRP-QGRPAGGVAGIKLAEGVKVISFTAV 715 >gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames] gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne] gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L] gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bacillus anthracis str. A2012] gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488] gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442] gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193] gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465] gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389] gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174] gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99] gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684] gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293] gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248] gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066] gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055] gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western North America USA6153] gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B] gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum] gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia 94] gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI] gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames] gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne] gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L] gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488] gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193] gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442] gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389] gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465] gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174] gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99] gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684] gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293] gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248] gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis str. CI] gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 807 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 V S L+AD D ++ + A +RL + + E+ T K Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] Length = 812 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 272/735 (37%), Positives = 430/735 (58%), Gaps = 45/735 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++S+ D M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A Sbjct: 4 IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL RM+Q+W +R LIE GN GS+DGDPPAA RYTE RL Sbjct: 64 KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVD+ N+D + EP VL +R+PN+LVNG GI+ G AT+IP HNL Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + + +P LD LM+ ++GPDFPTGA++ G GIK AY TGRG +++R + Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++ QIVV+EIPY+VNKA ++++I EL K++ I+++RD+SDR+G +VIELK Sbjct: 244 IESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ILN L++ T LQ ++ NMVA++ +PER +L IL +++ F+ EV+ +RT++ Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRTQF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DR H++ GL A++ LD+V++ IR S N + AR L++ Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q+ AI+ L+L RLT + E L +I IL+ Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553 L ++ +EL ++ PRRT I + + + + + I ED+VV VSH GY+KR + Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+A +G ++DED+ + ++ + F+S G + ++ + + Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670 G+ + + L+ E I F + L+++ AT G+++R KL+D + Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAFSSLKEK--GLFLI-ATDDGHIKRTKLTDLAPGRTYKK 628 Query: 671 SGKIAMKL-DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + KL D + I++++ + +LL +KLG +R+ I + + R + GV+ Sbjct: 629 HAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687 Query: 727 ISLAKGDQVISMAIV 741 +LA GD + ++ +V Sbjct: 688 QNLADGDVITNLQLV 702 >gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes str. 4b F2365] gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 819 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+L+V DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 >gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599] gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599] Length = 847 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 287/741 (38%), Positives = 427/741 (57%), Gaps = 44/741 (5%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I + S + M + YA VIL RAIPD RDGLKPV RRIL+ M Q G +K Y K A Sbjct: 6 IINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYRKSA 65 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG YHPHG++AIY+ + RMAQ W +R +LI+G GNFGS+D DPPAA RYTE RL Sbjct: 66 KTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYTESRL 125 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 A+ LL D+ KDTV F PNYD S Q+P VL +R+PN+LVNG GIAVG AT+IPTHNL Sbjct: 126 SALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPTHNL 185 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D VA + NP+I LD LM+ ++GPDFPTG ++ G +GI+ A+ TGRG +IRG +H Sbjct: 186 GEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIRGKTH 245 Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-----QGYR 309 +E+ G + ++IVV+EIPY+V K+ ++ +I ELV E++I +RDE+ R + R Sbjct: 246 VEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQKKVR 305 Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369 +V+++++ A ILN LY+ T LQ ++ NM ++ + L +L A++ ++EVV Sbjct: 306 IVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQKEVV 365 Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 R +Y L++ + R H++ GL A + L ++V I S + A++ +M++ Sbjct: 366 TNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYG------- 418 Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489 ++ Q AIL ++LA LT L + EL +L EI+E Sbjct: 419 -------------------FTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKS 459 Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVVTVSHLG 546 IL+S +L+ +I EL +K + R T I +G ++ D ++ ED +VT+++ G Sbjct: 460 ILASEKKLIQVITGELNEIKKKYAEERLTEI-QGEIEEIKIDIAMQINAEDCIVTLTNEG 518 Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606 Y+KR +++ GG + V ++ D V +T + LFF+ G + V Sbjct: 519 YIKRTSPRSFKS--VGGTLETCGV-KEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAF 575 Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666 P + G AL+NI+ L + +R I+ F E+ LYV +K+G +++ LS++ Sbjct: 576 PDDKWKDIGSALVNIIPLEKNQR---IVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYE 632 Query: 667 QINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725 S +A KL DE ++V + IL TK G +RF S + GR S GV+ Sbjct: 633 TNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSA-TGRASSGVK 691 Query: 726 GISLAKGDQVISMAIVLHADA 746 I+LA GD VI+M + D+ Sbjct: 692 AIALAPGDDVITMLPIEEVDS 712 >gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland 1988] Length = 819 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 440/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E + +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEGKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 >gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262] gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262] gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220] Length = 819 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/740 (37%), Positives = 441/740 (59%), Gaps = 51/740 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQ-------------- 410 Query: 433 LIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491 T Y SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 411 -------------TKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKIL 457 Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVK Sbjct: 458 GDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVK 517 Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPI 608 R Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 518 RTSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPD 571 Query: 609 GSPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664 + G + ++ S L+ GE I + I F E++ +F TK+G +++ +++ Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITN 625 Query: 665 FIQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 + + R K +A+KL DE+L+V DI L TK G +R+ I+ I +G + Sbjct: 626 Y-KPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPE-SGARTA 683 Query: 723 GVRGISLAKGDQVISMAIVL 742 GV+ I+L + D VI +++ Sbjct: 684 GVKAINLKQDDIVIGGIVLM 703 >gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97] gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1] gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97] gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1] Length = 807 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 V S L+AD D ++ + A +RL + + E+ T K Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W] gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820] gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201] gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W] gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820] gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201] gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 807 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/763 (37%), Positives = 445/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 V S L+AD D ++ + A +RL + + E+ T K Sbjct: 693 YVAS-GKPLNADKD---QLILVTQRGAIKRLKASEIEKSTRAK 731 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAIKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 812 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 273/735 (37%), Positives = 428/735 (58%), Gaps = 45/735 (6%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++S+ D M + Y+ ++I RA+PD+RDGLKPV RRIL+ M + G ++K + K A Sbjct: 4 IENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRKSA 63 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 + G VMG +HPHG+++IY+AL RM+Q+W +R LIE GN GS+DGDPPAA RYTE RL Sbjct: 64 KSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195 K + +L D+ KDTVD+ N+D + EP VL +R+PN+LVNG GI+ G AT+IP HNL Sbjct: 124 SKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 GEV+D + + +P LD LM+ ++GPDFPTGA++ G GIK AY TGRG +++R + Sbjct: 184 GEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSKTK 243 Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315 IE G++ QIVV+EIPY+VNKA ++++I EL K++ I+++RD+SDR+G +VIELK Sbjct: 244 IEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIELK 303 Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375 R + ILN L++ T LQ ++ NMVA++ +PER +L IL +++ F++EV+ +RT++ Sbjct: 304 RDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQQEVIKKRTQF 363 Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435 L KA DR H++ GL A++ LD+V++ IR S N + AR L++ Sbjct: 364 DLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK---------------- 407 Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 T SE Q+ AI+ L+L RLT + E L +I IL+ Sbjct: 408 ----------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILADPK 457 Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVR-EDMVVTVSHLGYVKRVPL 553 L ++ +EL ++ PRRT I + + ++ D I+ ED+VV VSH GY+KR + Sbjct: 458 ELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRSSI 517 Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 Y+A +G ++DED+ + ++ + F+S G + ++ + + Sbjct: 518 RSYKA----SGNENG--LKDEDYPIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRWKD 571 Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINR 670 G+ + + L+ E I F S + AT G+++R KL+D + Sbjct: 572 TGEHISQTIGLDNDEEIIGTFAF---SSLKEKGVFLIATDDGHIKRTKLTDLAPGRTYKK 628 Query: 671 SGKIAMKL-DSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 + KL D I++++ + +LL +KLG +R+ I + + R + GV+ Sbjct: 629 HAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGLALRYGIDEVPINGAR-TTGVKS 687 Query: 727 ISLAKGDQVISMAIV 741 +LA GD + ++ +V Sbjct: 688 QNLADGDVITNLKLV 702 >gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120] gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120] Length = 819 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 298/880 (33%), Positives = 486/880 (55%), Gaps = 101/880 (11%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +DNP D +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA+N +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINRKRPELMGIIPMLDAYIDHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KAR R H+L GL A++ LDEV+++IR S + A+ L Q +++ Sbjct: 365 SEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTNYD--------- 414 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEKILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 + L+ ++K+EL +K + T RRT + + + ++ E + ED++V+V+ GYVKR Sbjct: 459 DEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609 Y A + + M++ D + +++ S+L F+S G F+Y+ V LP Sbjct: 519 TSQRSYAAS-----NGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR-PVHELPDI 572 Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + G + ++ S L+ GE I + I F E++ +F TK+G +++ ++++ Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKR------FLFVTKNGMTKQSAITNY 626 Query: 666 IQINRSGK--IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + R K +A+KL DE+LSV DI L TK G +R+ I+ I +G + G Sbjct: 627 -KPQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGLRYSITEIPE-SGARTAG 684 Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783 V+ I+L + D V+ ++ + KH Sbjct: 685 VKAINLKQDDIVVGGVVITPNE---------QKH-------------------------- 709 Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843 IL +++G K+ + +F +R+ +G+ K N + Sbjct: 710 ----------------ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNP-HRFIG 752 Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883 + ++ND + + ++ ++ + VN +RI R + G + Sbjct: 753 LTLADNNDHLFIETNTDQVVEIDVNNLRITDRYSNGSFVL 792 Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust. Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 28/257 (10%) Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703 N +V TK G V+R + N ++AMK D + ++ + +LL T G Sbjct: 503 NEDVIVSVTKEGYVKRTSQRSYAASN-GAELAMK--EADHAIFIQKMNSLDSLLLFTSKG 559 Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763 + P+ + +N GD V +A L A + I ++ + ++R Sbjct: 560 NFIYRPVHELPDIRWKNL----------GDHVSHLASDLSAGEEIRSAIA-IQAFTEEKR 608 Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKE-------------QFILTVSEKGFGK 810 + +T ++ + + +KLK+ + I ++ G+G Sbjct: 609 FLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGL 668 Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870 R S + S G++A ++ + + + V + P N+ I+L + +G+L ++ +E Sbjct: 669 RYSITEIPESGARTAGVKAINLKQDDIVVGGVVITP-NEQKHILLATQRGSLKQMKASEF 727 Query: 871 RIASRATKGVVIFSTAK 887 SRA +G+++ K Sbjct: 728 EPISRAKRGLLMLRELK 744 >gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis ATCC 25644] gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis ATCC 25644] Length = 817 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 283/748 (37%), Positives = 436/748 (58%), Gaps = 53/748 (7%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E I +S+ M + Y+ +I RA+PD+RDGLKPV RRILF M + G ++K Sbjct: 3 ETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDKP 62 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K A+ G VMG YHPHG+++IY+A+ R++Q W LR LIE GN GS+DGDPPAA RY Sbjct: 63 FRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMRY 122 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL + A +L D+ K TV+ PN+D + EP VL AR+PN+LVNG GI+ G AT I Sbjct: 123 TEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATEI 182 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 PTHNL E + + ++D+P+ +LD LM+ I+GPDFPTG ++LG GIK AY TGRG ++ Sbjct: 183 PTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIMLGLDGIKKAYETGRGKAML 242 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 R + IE G ++QIV+ EIPY+VNKA +++KI E+ +K+ IA++RDESDR+G R+ Sbjct: 243 RARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGLRI 302 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELK+ A+A ILN L++ T LQ ++ NMVA++ P+ L IL++++ + VV Sbjct: 303 VVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDHKCPKHVGLKKILESYLEHQRIVVT 362 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 +RT++ LNKA++R H++ GL A++ LD+V++ IR S N + A+ L+ Sbjct: 363 KRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLV------------ 410 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 SS+ +E Q AI+ L+L RLT ++NE L I E I Sbjct: 411 ------SSFD--------FTEKQAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKI 456 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548 L++ L +IK+EL ++ + TPR T I + L ++ E + +ED+++ VS GYV Sbjct: 457 LNNGKELDKVIKKELKTIDKKYGTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYV 516 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KR L ++A G +++ED V + + +T +L F++ G V + + Sbjct: 517 KRSSLRSFKASDESDNG-----LKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVD 571 Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666 + G+ L + L+ ER+ F E E ++ VFATK G +++ L D + Sbjct: 572 SRWKDTGEHLSQTVGLSDDERVIEAFTFDSLEKEGAF-----VFATKEGMIKQTLLKD-L 625 Query: 667 QINRSGK------IAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFA 717 + R+ + I +K D+ DE++ E EN+ + TT G +R+ ++ + Sbjct: 626 KPGRTYRSRAQTFIKLKTDT-DEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEVPTTG 684 Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745 R S GV+ + L + D +IS+++V D Sbjct: 685 ARTS-GVKCMDL-RDDFLISVSLVSEHD 710 Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 11/100 (11%) Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855 +E +L VS G+ KR+S F+ S+ S G++ DV + ++ N D +++ Sbjct: 503 QEDVMLLVSRDGYVKRSSLRSFKASDESDNGLKEEDVVILMKVA--------NTLDHLLM 554 Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVV 892 ++KG +I P+++I + G + T + DERV+ Sbjct: 555 FTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDERVI 594 >gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822] gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822] Length = 870 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 295/780 (37%), Positives = 438/780 (56%), Gaps = 89/780 (11%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+ ++ Y KCA Sbjct: 13 IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RM QD+S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 AH +L ++ + VDF N+D S QEPVVL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID+P ++ L EII GPDFPTG I+ GI AY T +G I IRGV+ Sbjct: 193 LGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDTEGIIEAYRTSKGIIPIRGVT 252 Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 H+E S +R IVVTE+PYQVNK+A +EK+AELV + R+ IAD+RDESDR G Sbjct: 253 HLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIRDESDRLGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR + IL+ LYR T+LQ+ F ++AL KP + +L +L+ F+ FRE+ Sbjct: 313 RVVIELKRETDSQKILDNLYRQTALQTNFGTILLALVENKPCQLSLRQLLEEFLKFREQT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 ++R+ + L +A+ R H+L GL IA+ NLD V+ I+R SP+ TA++ + ++N Sbjct: 373 LIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE-AFN----- 426 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 LSE Q+ +IL + + RLTGL + + E L I + Sbjct: 427 --------------------LSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQLQ 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI----------VEGLLDMEDED------C 532 +L+ R+ L+ +K+EL S+K + PRRTRI +LD Sbjct: 467 TLLNDRNELMKSLKKELRSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVLP 526 Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592 V ++ + T + P + ++ G+ S + + D + T+ +++ Sbjct: 527 TVTDEPIKTENAAKKASDSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIYW 586 Query: 593 S-------SLGFVYKEK---VWRLPIGSPQA------RGKAL--------------INIL 622 S+ + +E+ ++R I + +GKA ++L Sbjct: 587 QSSVQATDSIASLKQEEDFPIYRQAIAQKELLIVITNQGKAYPISVVDIPPKDSQACSLL 646 Query: 623 SL------NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676 SL + E++ PE++ N ++ ++ G ++R LS+ Q+ G + Sbjct: 647 SLLPNAAQKKAEKVVGYFFLPEEK---NTHELILLSQQGRIKRLPLSELNQLGNRGLALI 703 Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQV 735 K DE+ V + + +I + T G+ +RF IS + GRN+ G + + L G+ + Sbjct: 704 KFKDADELSYVCLSSVDEEIAIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHL 763 >gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478] Length = 1257 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 291/782 (37%), Positives = 438/782 (56%), Gaps = 99/782 (12%) Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL A +L ++ ++TVDF PNYDG QEP VL +R+PN+L NG GGIAVGMATNI Sbjct: 550 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 609 Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246 P HNL E+ D +DN D D L A+ME ++GPDFPT +I+G GI +AY TGRG Sbjct: 610 PPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 669 Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305 SI +RGV +E+ S R +V+TE+PYQVN + IAE VR+ ++ IA++ D+ S+R Sbjct: 670 SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGSER 729 Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 G R+V+ELKR A A V+LN LY++T LQ+ F NM+++ P L +++ +V + Sbjct: 730 VGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEHQ 789 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +V++RRT+Y L KA +RAH+L GL A+ LDEV+ +IR S + AR Sbjct: 790 LDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIAR----------- 838 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 LI+L+D + E+Q +AIL+++L RL L R I ++L + EI Sbjct: 839 --AGLIELLD-------------IDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 883 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545 + DIL+ R GI++ EL + D+ RRTRIV D+ DED I RED+VVT++ Sbjct: 884 DLEDILAKPERQRGIVRDELGEIVDKHGDDRRTRIVAADGDVSDEDLIAREDVVVTITET 943 Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605 GY KR +YR+Q+RGGKG G ++ +D V F+ STH +LFF++ G VY+ K + Sbjct: 944 GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYE 1003 Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 LP S ARG+ + N+L+ ERI ++ E + Y+V ATK+G V+++KL+DF Sbjct: 1004 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYEDA---PYLVLATKNGLVKKSKLTDF 1060 Query: 666 IQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSV 722 NRSG I A+ L DE++ C+ E+D+LL + GQ +RF + A+R GR + Sbjct: 1061 -DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GRATS 1118 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+G+ + D+R+ + Sbjct: 1119 GVQGMRF-----------------NADDRLLSL--------------------------- 1134 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT--DVSKINEIGA 840 N+ E ++L + G+ KRT+ ++ + R GKG+ D + +GA Sbjct: 1135 -NVVREGT--------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGA 1185 Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE 899 L+A +D+ ++ ++ G +IR ++R A R TKGV + + + + ++++ R E Sbjct: 1186 LIA----DDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEE 1241 Query: 900 SE 901 SE Sbjct: 1242 SE 1243 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%) Query: 1 MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60 MT+ + D E+ I V I EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M Sbjct: 1 MTDTTLPPDNSAER-IEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59 Query: 61 MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120 G ++ + K AR E MG YHPHG+A+IYD L RMAQ WSLR L++GQGNFGS Sbjct: 60 YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119 Query: 121 DGDPPAAERY 130 DPPAA RY Sbjct: 120 GNDPPAAMRY 129 >gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 832 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 282/740 (38%), Positives = 427/740 (57%), Gaps = 43/740 (5%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + S + + M + + Y+ +I RA+PD RDGLKPV RRIL+ M + G W+K Sbjct: 9 EHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 68 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 Y K A+ G V+G YHPHG++++Y+A+ RM+Q+W +R I+ QGN GS+D DP AA RY Sbjct: 69 YRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 128 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE RL K + LL D+ K+TV + PN+D + EP VL ARYPN+LVNG GIA G ATNI Sbjct: 129 TEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 188 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV+D V I + D L+ LME I+GPDFPTG ++ G GI+ A+ TG+G I++ Sbjct: 189 PPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGGIVQGLDGIREAFETGKGRIIV 248 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 RG + IE+ +QIV+TEIPY+V K+ M++KI ++ K+I I D+RDESDR G RV Sbjct: 249 RGKAVIEQKKT-VQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 307 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+++K+ A+ DVILN LY+ T LQ ++ N+VA+ +P + L +L AF+ R EV+ Sbjct: 308 VVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAQMLDAFIEHRREVIE 367 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR++Y L K DR H+L GL AV+ LDE++ +IR S + ++R +M Sbjct: 368 RRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIMD----------- 416 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 S+ Q AI+ +RL RL+ +R E +L EI+E DI Sbjct: 417 ---------------AFAFSDAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDI 461 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548 L + L ++ +EL VK TPR TRI + ++ + I E ++ T+S GY Sbjct: 462 LENPRMLKKVMIRELHEVKKAFKTPRLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYF 521 Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608 KRV + Y A + G +++ D + V+T VLFF++ G V+ + Sbjct: 522 KRVSMRSYNAGKEDMTG-----LKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEE 576 Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668 + G + + + ++ E+IT S N Y++ TK+G V++ + ++ ++ Sbjct: 577 SRWKEIGSHINSTIRISGEEKITDAFVL---RSFATNAYMISVTKNGLVKKTAVREY-EV 632 Query: 669 NRSGKIA--MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726 +R+ K MKL DE+++ ++IL+ +K G R+P+S I + R S GV+ Sbjct: 633 SRNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLIPETSPR-SKGVKA 691 Query: 727 ISLAKGDQVISMAIVLHADA 746 ++L D+++S A + HADA Sbjct: 692 MNLVM-DELVS-ACIHHADA 709 >gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris ATCC 700780] gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris ATCC 700780] Length = 823 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 309/897 (34%), Positives = 483/897 (53%), Gaps = 109/897 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P ++ LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIV+TEIPY++NKA +++KI E+ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ +++LN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R++ Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A+ L Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 405 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 SY +E Q AI+ L+L RLT ++ E L +I ++ Sbjct: 406 -KVSYE--------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 L ++K+EL VK + TPR + + +++++ I E+ V+V+ GY+KR Sbjct: 457 RTLYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + A G+ R++D + + T +L F++LG V ++R PI Sbjct: 517 PRSFAASTLEEIGK-----REDDRLIFTQVAKTTQHLLMFTTLGNV----IYR-PIHE-- 564 Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662 L +I + GE ++ TI F +E +++ F AT+ G ++R + Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRVER 619 Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +F ++S K A D D+I++V + +D+LL +K G +RF I + V G Sbjct: 620 KEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPI-KLDDVLLISKNGYALRFNIEEVPV-VG 677 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 + GV+ ++L K D I +A + + + Y + + +R+ TEEI Sbjct: 678 AKAAGVKAMNL-KADDEIQVAFICNTSSFY-----LLTQRGSLKRV---STEEIP----- 723 Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ + +ELK K + TVSE+GF Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGTVSEQGF--------------------------- 756 Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 IG L + V D DQ ++V S+KG + + ++ ++ R + G I T DE V Sbjct: 757 --IGDLFST-EVEDGDQTLVVQSNKGIIYETILQDLNLSERTSNGSFISETISDEEV 810 >gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1] Length = 817 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/752 (38%), Positives = 421/752 (55%), Gaps = 64/752 (8%) Query: 7 SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66 D+ EE+ I + + DEMQ S+L YA +VI RA+PD RDGLKPVHRRIL+ M +MG+ Sbjct: 10 PPDDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLR 68 Query: 67 WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125 + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPP Sbjct: 69 PERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPP 128 Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185 AA RYTECR+ A + + + +DTVDF PNYDGS QEP+ L A YPN+LVNG GIAVG Sbjct: 129 AAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAVG 188 Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245 MATN+ HNLGEV+ +I +P DLDALM + GPD PTG I+G G+++AY GR Sbjct: 189 MATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIVGLGGVRDAYEKGR 248 Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305 G+ IR +E + R+ +VVTE+P+ V ++ KI +LV K++ I+D++D +DR Sbjct: 249 GTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLTDR 308 Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364 Q G R+VIE+K G + + +L QLY+ T ++ F +N VAL +P L +L+ ++ Sbjct: 309 QHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDH 368 Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424 R +VV RR+++ K RDR H++ GL +A+ ++DEV+R+IR S N A++ L+ R Sbjct: 369 RFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIAR---- 424 Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484 LS+VQT+ IL+ L RLT R ++ +E + L EI Sbjct: 425 ----------------------FELSDVQTQYILDTPLRRLTKFDRIELESERDRLKAEI 462 Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVRE 536 +E IL S + L ++ EL V + T RRT ++E L++ D+ C Sbjct: 463 EELTRILDSDAELRKLVSAELAQVAKKFGTERRTVLLESADAPVTAVPLEVADDPC---- 518 Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596 V +S G + R A G D + + + +S G Sbjct: 519 --RVLLSSTGLLART------ANGEPFPGEEQAKRAKHDVIVSAVPATARGDLGAVTSTG 570 Query: 597 FVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVF 650 + + V LPI +P G A I LSL GE + + DESS + Sbjct: 571 RLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTL--DESSPG---LAI 625 Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFP 709 T+ G V+R + D+ N+ + L D I+ +VE T E D++ T Q +R+P Sbjct: 626 GTEQGVVKR-VVPDY-PANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYP 683 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 S +R GR + G+ GI L G +VIS V Sbjct: 684 ASQVRP-QGRPAGGMAGIKLGAGAKVISFTAV 714 >gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601] gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601] Length = 820 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 273/729 (37%), Positives = 431/729 (59%), Gaps = 41/729 (5%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QD+ +R LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL K A LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +D PD L +M+I++GPDFPTG +I G GI+ AY TG+G I++R Sbjct: 185 HNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIIVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + +E G R+QI + EIPY+VNKA ++++I EL EKRI I+++RDE+DR G R+ + Sbjct: 245 KTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+++ +LN L++ T LQ ++ NMVA++ +PE +I +L A+++ ++E++ +R Sbjct: 305 ELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKRPELMGIIAMLDAYISHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 ++Y + KA+ R H++ GL A++ LDEV+++IR S + A+ L Q Sbjct: 365 SEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQ------------- 411 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 T SE Q AI+ L+L RLT D+ E L +I IL Sbjct: 412 -------------TYQFSERQAEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKR 550 L+ +K EL +K TPR T I + + ++ E + ED++V+V+ GYVKR Sbjct: 459 DEGELVKTLKAELTEIKKNYKTPRLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609 Y A KG + M++ D + ++T ++L F+S G F+Y+ V LP Sbjct: 519 TSYRSYTA----SKG-DELAMKETDHAIFIEKMNTMDALLLFTSHGNFIYR-PVHELPDI 572 Query: 610 SPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667 + G + +I++ + GE + +P + + +VF T+ G + + ++++ Q Sbjct: 573 RWKNLGDHVSHIVTEMGSGEEVIQALPLSKANETQK---LVFLTQAGMTKVSLIANYRPQ 629 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 +A+KL + D++L+V DI + T+ G +R+PI+ I +G + GV+ I Sbjct: 630 RYSKAMMAIKLKADDKLLNVAVADGSEDIFIATRNGYGLRYPITEIPE-SGTRTAGVKAI 688 Query: 728 SLAKGDQVI 736 +L + D+V+ Sbjct: 689 NLKETDEVV 697 >gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342] gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342] gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 807 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 V S L+ D D ++ + A +RL + + E+ T K Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987] gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187] gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26] gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987] gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187] gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26] Length = 807 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L K D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINL-KED 691 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 ++ L+ D D ++ + A +RL + + E+ T K Sbjct: 692 DYVAAGKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + A P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVAAGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5] gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5] Length = 744 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/733 (38%), Positives = 425/733 (57%), Gaps = 71/733 (9%) Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70 E + + + I +E++ +Y+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+ +K Sbjct: 2 ENRENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKP 61 Query: 71 YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130 + K ARI GE +GKYHPHG+ A+Y+AL RMAQD+++R LI GQGNFGS+DGDP A RY Sbjct: 62 FKKSARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRY 121 Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190 TE +L A +L D+ KDTVDF+PN+D + EP VL +++PN+L NG GIAVG+AT+I Sbjct: 122 TEAKLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSI 181 Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250 P HNL EV + V + NP I +D +MEI++GPDFPTG VI +K Y TGRG I + Sbjct: 182 PPHNLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKV 241 Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310 +G +H+EK G RE+IV+TEIPYQVNKA +++KIA+ VR +I +I+D+RDE+D++G R+ Sbjct: 242 KGKAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRI 301 Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370 V+ELKR A + +L +LY+YT L+ F VN+V L +P+ + +L+ F+ R EV++ Sbjct: 302 VVELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVIL 361 Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430 RR+KY L K +DR H++ GL A+ +D+++ IR S + AR LM+ Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE---------- 411 Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490 LSE Q +A+L+LRL RLT L R+ + E L +I+ + Sbjct: 412 ----------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKKL 455 Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---CIVREDMVVTVSHLGY 547 ++S + + +E + + RRT + G+ ++++ ++++ ++ V L Sbjct: 456 VASEGERIKVFIEETEELVKKYGDKRRT-FIGGVKEVKEGSITVAVLQDGSIIPVEELPL 514 Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607 K +++ R F LF+VS G VY W Sbjct: 515 EKAPVVNILRV----------------PFTEGLFLVSNR---------GRVY----W--- 542 Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667 I QA + +++ S + E+I E N L + ATK G V++ L++F + Sbjct: 543 IAGSQALQGSKVSLKS--REEKIVGAFI---REKFGNRL--LLATKKGYVKKIPLAEF-E 594 Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727 G +KL DE++S+ + E ILL TK G+ RF + + + + GV+GI Sbjct: 595 YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPP-STPGARGVQGI 653 Query: 728 SLAKGDQVISMAI 740 L K D+ + I Sbjct: 654 KLEKNDETSGLRI 666 Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 40/240 (16%) Query: 477 LNSLGIEIKECLDILSSRSRLLGII-KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535 +N L + E L ++S+R R+ I Q L K L + R +IV +R Sbjct: 520 VNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIV---------GAFIR 569 Query: 536 EDM---VVTVSHLGYVKRVPLSV--YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 E ++ + GYVK++PL+ Y+AQ G + + + D V + T +L Sbjct: 570 EKFGNRLLLATKKGYVKKIPLAEFEYKAQ-----GMPIIKLTEGDEVVSIASSVDETHIL 624 Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS----WN-N 645 F+ G V + V +P +P ARG QG ++ DE+S WN Sbjct: 625 LFTKKGRVARFSVREVPPSTPGARG---------VQGIKLEK-----NDETSGLRIWNGE 670 Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705 Y++ T G V++ + + NR K ++D ++ + +E ++L+TTK G+ Sbjct: 671 PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKA 730 >gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102] gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102] Length = 824 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/750 (38%), Positives = 432/750 (57%), Gaps = 64/750 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ + S+++ EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+ ++ Y Sbjct: 3 EERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R L++G GNFGSVD DPPAA RYTE Sbjct: 63 KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122 Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191 RL AH LL+++G DTVDF PN+DGS QEP VL A+ P +L+NG GIAVGMAT+IP Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182 Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251 HNLGEVVDG VA+I P++ L+E+I GPDFPTG +L +G+++ Y GRGSI +R Sbjct: 183 PHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLSSGLRDTYLVGRGSIPMR 242 Query: 252 GVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306 G++HIE K R +VVTE+PYQ++KA +EK+AE V + +I IAD+RDESDR+ Sbjct: 243 GIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G RVV+EL+R A +L L R T+LQS F ++AL +P + +L +L+ F+ +RE Sbjct: 303 GMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQPRQLSLRQLLQTFLDYRE 362 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 ++RRT + L K DR V+ GL A+ NL V+ +I+ + + +AR LM R Sbjct: 363 LTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQEARDAASARASLMVR------ 416 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 + LSE Q A+L + L RLTGL ++ +R EL L E + Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELEELQAERER 456 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546 +L +R +LL + QEL +K TPRRTR+VEG D ++ E + Sbjct: 457 LRLLLDNRDQLLDAMVQELKGLKKRFSTPRRTRLVEG------GDALMAERAASQRPNTE 510 Query: 547 YVKRVPLSVYRAQRR---GGKGRSGVV---MRDEDFVTDLFIVSTHTS------------ 588 +++ L A R G+ V+ + +++ V H S Sbjct: 511 LLRQQALEALPADARLLIQADGQVKVMSPPVLGRMHLSEPCAVGDHPSPAQVILPIEPSP 570 Query: 589 -VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 +L S+ G V + W P + K L + L G+ + I+ P + + +L Sbjct: 571 RLLGVSASGRVALVR-WEFAGQQPGSLEKFLPSGLD---GDPLIAILELPVGDGTEFSLG 626 Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707 ++ + G +R L+D + ++ +KL + S C + +D++L + +G+ +R Sbjct: 627 LL--SSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLR 684 Query: 708 FPIS-AIRVFAGRNSVGVRGISLAKGDQVI 736 P++ ++ GR + G + L G++++ Sbjct: 685 LPVNDSVLPKMGRLAQGPMTMRLLPGEELV 714 >gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA] gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA] Length = 968 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/748 (39%), Positives = 423/748 (56%), Gaps = 64/748 (8%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 + I V + + M ++YL YAI V RA+PD+RDGLKPVHRRIL+G Q+ ++ Y Sbjct: 11 DNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFPDRPYY 70 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K ARI G+++GKYHPHG+ ++YDA+ MAQ++S R LI+G GN+GS+DGD AA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAAMRYTE 130 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL A +L D+ K+TVD PNY S EP VL +RYPN+LVNG GIAVG+ATNIP Sbjct: 131 ARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLATNIPP 190 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNLGEV DG +A IDN +I LM ++GPD PTG +++G+ I AY TG G + +R Sbjct: 191 HNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILIGQNSILAAYETGEGKVTLRA 250 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGY 308 ++IE+ R IV+TE P++ NKA +L+ I+E+ +KR + I D+RDESDR G Sbjct: 251 KTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDESDRSGV 310 Query: 309 RVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365 R VIEL++ A AD +L L++ T LQ S NMVAL KP+ L I+K +V + Sbjct: 311 RAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGKPQTMGLKTIIKHYVNHQ 370 Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425 +E+V RRT L+ A R H++ G A+ LDE+++ IR S + + A Sbjct: 371 KEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAG----------- 419 Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485 ++LI +T E+Q AILEL L RLTGL + E L IK Sbjct: 420 -----VNLISKFGFT----------EIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIK 464 Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVT 541 + ILS LL ++K EL V D+ PR+T I+ E +D+ E+ IV ED+++T Sbjct: 465 KLKKILSEEKELLKVVKNELKEVSDKYRNPRKTSIIKDDNEAKIDV--EELIVVEDVMIT 522 Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601 +S G++KR+PL + R K + R+ D + LF +T S+L F++ G +Y+ Sbjct: 523 LSKDGFIKRIPLKTF--NRLNAKAED-IEYREGDELKFLFKSNTTESILLFTNKGNMYQT 579 Query: 602 KVWRLPIGSPQARGKALINIL-SLNQGER-------ITTIMPFPEDESSWNNLYVVFATK 653 K +P G + +G+ + NI+ +LN E +T+ +P + Y+ F T Sbjct: 580 KGINIPEGKWKEKGEKVDNIIKTLNLEEENIIFATSVTSFIP---------SKYIQFITS 630 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPI 710 G ++R+ L F Q + + A+KL +E++ V QE I TK G I Sbjct: 631 RGGIKRSSLDKF-QTSYTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSLQI 689 Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISM 738 I RN + +L+ D++I + Sbjct: 690 PKIEDLP-RNILPTIMFNLSNKDEIIKV 716 Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 83/161 (51%), Gaps = 16/161 (9%) Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWN 644 ++VL F++ G V+K + L S ++G+ ++ + ++ + E++ + E Sbjct: 757 SNVLMFTNKGKVFKIPAFLL---SGVSKGELPLDKIVDNIEKDEKVIKVFSLKTFEE--- 810 Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVET---CTQENDILLTT 700 N ++ F T+ G +++ L++F N S +I K DE++SVE C E +L+ T Sbjct: 811 NKFIYFFTRRGMIKKTALTEF-DGNYSTQITYKFKYDNDELISVELYDDCQVE--MLIIT 867 Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 K ++F + G+ + GV GISL + D+VI +++ Sbjct: 868 KKAMGIKFSSENVNTM-GKVASGVTGISLKENDEVIYGSLI 907 >gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143] gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143] Length = 826 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 308/897 (34%), Positives = 484/897 (53%), Gaps = 109/897 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G + K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIV+TEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ ++ILN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R++ Sbjct: 303 KKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT ++ E L +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK + TPR + + +++++ I ED V+V+ GY+KR Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612 + A G+ RD+D + + T +L F+SLG V ++R PI Sbjct: 517 PRSFAASTLEEIGK-----RDDDRLIFVQTAKTTQHLLMFTSLGNV----IYR-PIHE-- 564 Query: 613 ARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKL 662 L +I + GE ++ TI F +E +++ F AT+ G ++R + Sbjct: 565 -----LADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDATTYFAATRLGQIKRVER 619 Query: 663 SDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718 +F ++S K A D D+I++V + +D+LL ++ G +RF I + V G Sbjct: 620 KEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI-KLDDVLLISQNGYALRFNIEEVPV-VG 677 Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778 + GV+ ++L K + + A + + + Y + QR G + ++ + Sbjct: 678 AKAAGVKAMNL-KANDALQAAFICNTSSFY---------LLTQR----GSLKRVSIEEIP 723 Query: 779 SSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835 ++ + +ELK K + V E+GF Sbjct: 724 ATSRAKRGLQVLRELKNKPHRVFLAGAVVEQGF--------------------------- 756 Query: 836 NEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 IG L + V +NDQI+LV S+KGT+ + ++ ++ R + G I T DE V Sbjct: 757 --IGDLFST-EVEENDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810 >gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)] gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)] Length = 818 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/754 (38%), Positives = 422/754 (55%), Gaps = 71/754 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ E+ I + + DEMQ S+L YA +VI RA+PD RDGLKPVHRRI++ M +MG+ Sbjct: 12 DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPE 71 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA Sbjct: 72 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAA 131 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ +AA + + + +DTVDF PNYDG QEPV L A +PN+LVNG GIAVGMA Sbjct: 132 MRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+ +I P+ DLDALM+ + GPD PTG I+G GI++AY TGRG+ Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGRGT 251 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306 IR +E + R+ +VVTE+P+ V ++ KI +LV K+I IAD++D +DR Sbjct: 252 FKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAH 311 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T+++ F +N VAL +P L +L+ ++ R Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RR+++ +K RDR H++ GL A+ ++DEV+R+IR S N A++ LM+R Sbjct: 372 TVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER------ 425 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+VQT+ IL+ L RLT R ++ +E + L EI+E Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEE 465 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538 IL S + L ++ EL +V + T RRT ++E L + D+ C Sbjct: 466 LTRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDPC------ 519 Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V +S G + R PL +R D + + V +S Sbjct: 520 RVLLSSTGLLARTANDEPLVTEAGAKR----------VKHDLIVSAVPATARGEVGVVTS 569 Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 G + + V LP + +P A G L +SL E + + DESS + Sbjct: 570 GGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTL--DESSPG---L 624 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707 T+ G V+R + D+ N+ + L D I+ VE T + D++ T Q +R Sbjct: 625 ALGTEQGVVKR-VVPDYPS-NKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLR 682 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 + S +R GR + GV G+ LA G +VIS V Sbjct: 683 YQASQVRP-QGRPAGGVAGVKLADGAKVISFTAV 715 >gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42] gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42] Length = 807 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/764 (37%), Positives = 444/764 (58%), Gaps = 47/764 (6%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI---TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSG 672 + NI+SL++ E I T + F E++ ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVSNFEEEKR-----FIVFVTKNGMIKKTELNQYKVQRYSRA 632 Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + Sbjct: 633 FVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKED 691 Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 D V S L+AD D ++ + A +RL + + E+ T K Sbjct: 692 DYVAS-GKPLNADKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 807 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 296/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EV+ RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+ D D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + +R +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 819 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 280/742 (37%), Positives = 442/742 (59%), Gaps = 49/742 (6%) Query: 13 EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72 E+ I +++ + M + + Y+ +I RA+PD+RDGLKPV RRILF M G K + Sbjct: 5 EQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGFR 64 Query: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132 K A+ G V+G YHPHG++++Y+A+ RM+QDW +R +LIE GN GSVDGDPPAA RYTE Sbjct: 65 KSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTE 124 Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192 RL + LL D+ K+TVDF PN+D + EP VL AR+PN+LVNG GI+ G AT+IP Sbjct: 125 ARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPP 184 Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252 HNL E+++ + +D P + +M+I++GPDFPTG +I G GI+ AY TG+G +V+R Sbjct: 185 HNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVVRS 244 Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312 + IE G R+QI + EIPY+VNKA +++++ EL EK+I I+++RDE+DR G R+ + Sbjct: 245 KTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAV 304 Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372 ELK+ A+A+ +LN L++ T LQ ++ NMVA++ +PE +I +L A++ ++E++ +R Sbjct: 305 ELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIITKR 364 Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 +++ + KAR R H+L GL A++ LDEV+++IR S + A+ L Q +++ Sbjct: 365 SEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNL-QTTYD--------- 414 Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492 SE Q AI+ L+L RLT ++++E SL +I IL Sbjct: 415 ----------------FSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILG 458 Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKR 550 + L+ ++K EL +K + TPRRT + + + ++ E + ED++V+V+ GYVKR Sbjct: 459 DEAELVAVLKAELSEIKKKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKR 518 Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG-FVYKEKVWRLPIG 609 Y A GK + M++ D + +++ ++L F+S G F+Y+ V LP Sbjct: 519 TSQRSYAAS--NGK---ELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYR-PVHELPDI 572 Query: 610 SPQARGKALINILS-LNQGERITT---IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 + G + ++ S L+ GE I + I F E++ +F TK+G +++ ++++ Sbjct: 573 RWKNLGDHVSHLASDLSAGEEIRSVIDIQTFTEEKR------FLFVTKNGMTKQSLITNY 626 Query: 666 IQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723 + R K M KL DE+LSV DI L TK G +R+PI+ I +G + G Sbjct: 627 -KPQRYSKSMMGIKLKDDDELLSVHLIDGTEDIFLATKNGYGLRYPIAEIPE-SGARTAG 684 Query: 724 VRGISLAKGDQVISMAIVLHAD 745 V+ I+L + D VI ++ D Sbjct: 685 VKAINLKQDDTVIGGVVLTPND 706 >gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC 25486] gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC 25486] Length = 816 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/754 (38%), Positives = 423/754 (56%), Gaps = 73/754 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ EE+ I + + DEMQ S+L YA +VI RA+PD RDG+KPVHRRI++ M +MG+ + Sbjct: 12 DDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPD 70 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA Sbjct: 71 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ A + + + +DTVDF+ NYDG +EPV L A YPN+LVNG GIAVGMA Sbjct: 131 MRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAVGMA 190 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNLGEV+ +I +P DL+ LM + GPD PTG I+G TGI++AY +GRG+ Sbjct: 191 TNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIVGLTGIRDAYESGRGT 250 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306 IR +E + R+ +VVTE+P+ V ++ KI +LV K++ IAD++D +DRQ Sbjct: 251 FKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRQH 310 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T ++ F +N VAL +P L +L+ ++ R Sbjct: 311 GLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 +VV RR+++ K RDR H++ GL +A+ ++DEV+R+IR S N A+ L++ Sbjct: 371 DVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEH------ 424 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LSE+QT+ IL+ L RLT R ++ +E + L EI E Sbjct: 425 --------------------FSLSEIQTQYILDTPLRRLTKFDRIELESERDRLNGEIDE 464 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------LDMEDEDCIVREDM 538 IL S + L ++ EL +V + TPRRT ++E L + D+ C Sbjct: 465 LTGILESDAELRKLVSSELAAVAKKFGTPRRTVLLESAGTPAPAASLQVADDPC------ 518 Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V +S G + R PL R++R D + + + V +S Sbjct: 519 RVLLSSTGLLARTATGEPLVDGRSRR-----------SKHDVIVSAVLTTQRGEVGAVTS 567 Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 G + + V LP +P A G + LSL E + + DESS + Sbjct: 568 SGRLLRLSVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTL--DESSPG---L 622 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707 T G V+R + D+ N+ + L D I+ E T E D++ T Q +R Sbjct: 623 ALGTLQGVVKR-VVPDY-PANKEELEVITLREGDRIVGGAELHTGEEDLVFITSDAQLLR 680 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 +P S +R GR + G+ GI LA+G +VIS V Sbjct: 681 YPASQVRP-QGRPAGGMTGIKLAEGAEVISFTAV 713 >gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676] gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15] gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15] gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676] gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar pakistani str. T13001] Length = 807 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 296/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EV+ RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+ D D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + +R +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae] Length = 823 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 307/896 (34%), Positives = 486/896 (54%), Gaps = 107/896 (11%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+ +IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ +++LN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R++ Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT ++ E L +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK + TPR + + ++++ I ED V+V+ GY+KR Sbjct: 457 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610 + A G+ RD+D + +F+ S T+ +L F+SLG V ++R PI Sbjct: 517 PRSFAASTLEEIGK-----RDDDRL--IFVQSAKTTQHLLMFTSLGNV----IYR-PIHE 564 Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660 L +I + GE ++ TI F +E +++ F AT+ G ++R Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRV 617 Query: 661 KLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + +F ++S K A D D+I++V + +D++L ++ G +RF I + V Sbjct: 618 ERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI-KLDDVVLVSQNGYALRFNIEEVPV- 675 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 G + GV+ ++L K D V+ A + + + Y + QR Sbjct: 676 VGAKAAGVKAMNL-KEDDVLQSAFICNTSSFY---------LLTQR-------------- 711 Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836 G++ +E+ + KR + N+ + A V++ Sbjct: 712 ------GSLKRVSIEEIPATSR----------AKRGLQVLRELKNKPHRVFLAGAVAEQE 755 Query: 837 EIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 +G L + V +NDQ +LV S+KGT+ + + ++ ++ R + G I T DE V Sbjct: 756 FVGDLFST-EVEENDQTLLVQSNKGTIYEIRLQDLNLSERTSNGSFISDTISDEEV 810 >gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] Length = 818 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/754 (38%), Positives = 422/754 (55%), Gaps = 71/754 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ E+ I + + DEMQ S+L YA +VI RA+PD RDGLKPVHRRI++ M +MG+ Sbjct: 12 DDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPE 71 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ + DPPAA Sbjct: 72 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAA 131 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ +AA + + + +DTVDF PNYDG QEPV L A +PN+LVNG GIAVGMA Sbjct: 132 MRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 191 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNL EV+ +I P+ DLDALM+ + GPD PTG I+G GI++AY TGRG+ Sbjct: 192 TNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGRGT 251 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306 IR +E + R+ +VVTE+P+ V ++ KI +LV K+I IAD++D +DR Sbjct: 252 FKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAH 311 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T+++ F +N VAL +P L +L+ ++ R Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RR+++ +K RDR H++ GL A+ ++DEV+R+IR S N A++ LM+R Sbjct: 372 TVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER------ 425 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS+VQT+ IL+ L RLT R ++ +E + L EI+E Sbjct: 426 --------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEE 465 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVREDM 538 IL S + L ++ EL +V + T RRT ++E L + D+ C Sbjct: 466 LSRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDPC------ 519 Query: 539 VVTVSHLGYVKRV----PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594 V +S G + R PL +R D + + V +S Sbjct: 520 RVLLSSTGLLARTANDEPLVTEAGAKR----------VKHDLIVSAVPATARGEVGVVTS 569 Query: 595 LGFVYKEKVWRLP-----IGSPQ-ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648 G + + V LP + +P A G L +SL E + + DESS + Sbjct: 570 GGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTL--DESSPG---L 624 Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVR 707 T+ G V+R + D+ N+ + L D I+ VE T + D++ T Q +R Sbjct: 625 ALGTEQGVVKR-VVPDYPS-NKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLR 682 Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 + S +R GR + GV G+ LA G +VIS V Sbjct: 683 YQASQVRP-QGRPAGGVAGVKLADGAKVISFTAV 715 >gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis ATCC 700779] gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis ATCC 700779] Length = 825 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 310/899 (34%), Positives = 489/899 (54%), Gaps = 113/899 (12%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIV+TEIPY++NKA +++KI E+ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ +++LN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R++ Sbjct: 303 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT ++ E L +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK + TPR + + + +++++ I ED V+V+ GY+KR Sbjct: 457 RTMYNLMKKELRDVKRQFATPRLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610 + A G+ RD+D + LFI S T+ +L F++LG V ++R P+ Sbjct: 517 PRSFSASTLEEIGK-----RDDDRL--LFIQSVKTTQHLLIFTTLGNV----IYR-PVHE 564 Query: 611 PQARGKALINILSLNQGERIT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRN 660 L +I + GE ++ TI F +E +++ F AT+ G ++R Sbjct: 565 -------LADIRWKDIGEHLSQTITNFETNEEVLYVEVVDQFDDATTYFAATRLGQIKRV 617 Query: 661 KLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716 + +F ++S K A D D+I++V + +D+LL +K G +RF I + V Sbjct: 618 ERKEFSPWRTYRSKSVKYAKLKDDSDQIVAVAPI-KLDDVLLISKNGYALRFNIEEVPV- 675 Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 G + GV+ ++L K D + A + + + Y + + +R+ TEEI Sbjct: 676 VGAKAAGVKAMNL-KADDELQAAFICNTSSFY-----LLTQRGSLKRV---STEEIP--- 723 Query: 777 NDSSVEGNISEERCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833 ++ + +ELK K + VSE+GF Sbjct: 724 --ATSRAKRGLQVLRELKSKPHRVFLAGAVSEQGF------------------------- 756 Query: 834 KINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891 IG L + V D +Q +++ S+ GT+ + ++ ++ R + G I T DE V Sbjct: 757 ----IGDLFST-EVEDGEQTLVIQSNNGTIYEAILQDLNLSERTSNGSFISDTISDEEV 810 >gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241] gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241] Length = 807 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/763 (37%), Positives = 444/763 (58%), Gaps = 45/763 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EVV RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF TK+G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTKNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776 V S L+ D D ++ + A +RL + + E+ T K Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAK 731 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579] gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4] gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579] gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4] Length = 807 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 295/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +A+ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EV+ RR++Y L Sbjct: 309 NAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E +L S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+ D D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + +R +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVLQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A] gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A] Length = 824 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 278/744 (37%), Positives = 430/744 (57%), Gaps = 53/744 (7%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I S S+ EM++SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ + + KCA Sbjct: 13 IISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R L+ G GNFGS+D DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRL 132 Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 A+ +L ++G++ +DF N+D S QEP+VL + PN+LVNG GIAVGMATNIP HN Sbjct: 133 SSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE++DG +A+++ P++ + L +II GPDFPTG I+ GIK+AY G+G I +RGV Sbjct: 193 LGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQTEGIKDAYRDGKGIIRVRGVV 252 Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 IEK + +R +++TE+PYQVNKAA +EKIA+LV R+ IAD+RDESDR G Sbjct: 253 SIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRTGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR A ++L +LY+ T+L+ F M+AL +P++ +L +L+ F++FRE+ Sbjct: 313 RVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVDNQPQQLSLRSLLEEFLSFREKT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ L +D++ +L GL IA+ANLD+V+ I+ S + A+ + + Sbjct: 373 LNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKE-------- 424 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + L+E Q IL + + RLTGL R I E L I++ + Sbjct: 425 ------------------LGLNEKQANGILAMPMRRLTGLERKKIETEYEELQIKVNKLE 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV----EGLLDMEDEDCIVREDMVVT--- 541 +L +R L +K+EL S+K + RRTRI+ + ++E + V + ++ Sbjct: 467 ILLKNRKEFLAELKKELRSLKKKYGDKRRTRIIGKDTTKINNIETQKLDVPKQPILQSKK 526 Query: 542 -VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR---DEDFVTDLFIVS----THTSVLFFS 593 +SH K++ L++ + + V R D F L I S ++ + Sbjct: 527 KISHTP--KQLNLNLSKDSILEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVIT 584 Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653 G Y K+ +P Q+ LI++L N + +++ + N ++ T Sbjct: 585 DNGKAYPIKILDIPYIDVQS--TFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTN 642 Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713 G ++R +LS+ + G MKL + D + + +E++I++ G+ +RF + Sbjct: 643 QGKIKRIQLSELNSLTNRGLSLMKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNE 702 Query: 714 RV-FAGRNSVGVRGISLAKGDQVI 736 + RN+ G + L ++++ Sbjct: 703 EIPVMNRNTQGEQAFRLRSKEEIV 726 >gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] Length = 815 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 290/752 (38%), Positives = 420/752 (55%), Gaps = 71/752 (9%) Query: 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68 D+ EE+ I + + DEMQ S+L YA +VI RA+PD RDG+KPVHRRI++ M +MG+ + Sbjct: 12 DDFEER-ILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRRD 70 Query: 69 KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127 + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ + DPPAA Sbjct: 71 RGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAA 130 Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187 RYTECR+ A + + + ++TVDF PNYDG QEPV L A +PN+LVNG GIAVGMA Sbjct: 131 MRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMA 190 Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247 TN+P HNLGEVV +I +P DL+ LM + GPD PTG I+G G+++AYATGRG+ Sbjct: 191 TNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIVGLGGVRDAYATGRGT 250 Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ- 306 IR +E + R+ +VVTE+P+ V ++ KI +LV K++ IAD++D +DR+ Sbjct: 251 FKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLTDREH 310 Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366 G R+VIE+K G + +L QLY+ T ++ F +N VAL +P L +L+ ++ R Sbjct: 311 GLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 370 Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426 VV RR+++ K RDR H++ GL +A+ ++DEV+RIIR S N AR LM+R Sbjct: 371 TVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMER------ 424 Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486 LS++QT+ IL+ L RLT R ++ +E + L EI+E Sbjct: 425 --------------------FSLSDIQTQYILDTPLRRLTRFDRIELESERDRLTAEIEE 464 Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-------LLDMEDEDCIVREDMV 539 IL S + L ++ EL +V + T RRT ++E L +ED C Sbjct: 465 LSRILDSDAELRKLVSSELAAVSKKYGTDRRTVLLESSGAAAAVPLQVEDTPC------R 518 Query: 540 VTVSHLGYVKR----VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595 V +S G + R PL+ A +R D + + V +S Sbjct: 519 VLLSSTGLLARTADATPLA--EAPKR----------VKHDLIVSAVAATARGEVGAVTSA 566 Query: 596 GFVYKEKVWRLPI-----GSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVV 649 G + + +V LP +P G A + L+L ER+ + DESS + Sbjct: 567 GRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEFLTLEADERLVCLTTL--DESSPG---LA 621 Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709 T G V+R + D+ ++ D + + E T E D++ T +RFP Sbjct: 622 LGTAQGVVKR-VVPDYPAHKEELEVISLRDGDRIVGATELRTGEEDLVFITDEAHLLRFP 680 Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741 S +R GR + G+ G+ L +G +V+S V Sbjct: 681 ASVVRP-QGRPAGGMAGVKLGEGARVVSFTAV 711 >gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211] gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211] Length = 818 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 308/892 (34%), Positives = 489/892 (54%), Gaps = 93/892 (10%) Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74 I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKS 62 Query: 75 ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134 A+ G +MG +HPHG+++IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE R Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 L + A +LL D+ KDTV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HN Sbjct: 123 LSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 L EV+D V +ID+P +D LME + GPDFPTGA++ GR IK AY TG+G +V+R + Sbjct: 183 LAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRT 242 Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314 IEK G +EQIVVTEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IEL Sbjct: 243 EIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 302 Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374 K+ A+ ++ILN L++YT LQ ++ NMVA++ + P ++ IL +++A R+E+++ R++ Sbjct: 303 KKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSR 362 Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434 + KA R H++ GL ++ LDEV+ +IR S N A +E ++ S++ Sbjct: 363 FDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADA-KENLKVSYD----------- 410 Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494 +E Q AI+ L+L RLT + E L +I I+ Sbjct: 411 --------------FTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGDE 456 Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552 + ++K+EL VK + PR + + + ++++ IV E+ V+V+ GY+KR Sbjct: 457 RTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRTS 516 Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKEKVWRLPIGS 610 + + G+ RD+D + +FI S T+ +L F++LG V V L Sbjct: 517 PRSFNSSTVDEVGK-----RDDDRL--IFISSAKTTQHLLIFTNLGNVIYRPVHELADIR 569 Query: 611 PQARGKAL---INILSLNQGERITTIMPFPEDESSWNNLYVVFA-TKHGNVRRNKLSDF- 665 + G+ L I N+ E I T + DE ++ FA TK G ++R + F Sbjct: 570 WKEIGEHLSQTITNFETNE-EVIYTELVDNFDEGTY------FAVTKLGQIKRVERKQFS 622 Query: 666 ---IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722 ++S K A + D+I+++ + + +D++L T+ G +RF I + V G + Sbjct: 623 PWRTYKSKSVKFAKLKNEDDQIITL-SPIKLDDVMLVTQNGYALRFNIEEVPV-VGAKAA 680 Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782 GV+ I+L K D V++ A +++ D+ Y + A +R+ D +TS Sbjct: 681 GVKAINLKK-DDVLAAAFIVNTDSFY-----ILTQRGALKRMAVADI-PVTS-------R 726 Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842 N + ++LK K + FG++ + D S+ Sbjct: 727 ANRGLQVLRDLKSKPHRVFQAG-PVFGEQPAELDLFSSDN-------------------- 765 Query: 843 AVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 P + +QI+ ++S+KGT +V + ++ ++ R + G I T DE V S Sbjct: 766 ---PTAEEEQILSIISNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFS 814 >gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424] gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424] Length = 848 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 302/929 (32%), Positives = 476/929 (51%), Gaps = 146/929 (15%) Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75 I ++ EM+ SYL YA++VI+GRA+PD+RDG+KPVHRRI++ M ++G+ ++ Y KCA Sbjct: 13 IIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCA 72 Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135 R+ G+V+GKYHPHG+ A+YDAL RM Q++S R L+ G GNFGSVD DPPAA RYTE RL Sbjct: 73 RVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 132 Query: 136 QK-AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194 +L ++ + VDF N+D S QEPVVL A+ P +L+NG GIAVGMATNIP HN Sbjct: 133 APIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHN 192 Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254 LGE+VDG +A+ID P + + L EII GPDFPTG I+ GIK AY TG+G I ++GV+ Sbjct: 193 LGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGVT 252 Query: 255 HIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308 H+E S +R IVVTE+PYQVNK+ +EK+A+LV + R+ IAD+RDESDRQG Sbjct: 253 HVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQGM 312 Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368 RVVIELKR +L LY+ T+LQS F V ++AL KP + +L +L+ F+ FRE+ Sbjct: 313 RVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQT 372 Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428 + R+ ++ L +A+ R H+L GL IA+ NLD+V+ I+R +P+ TA+++ + Sbjct: 373 LTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE-------- 424 Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488 + +SE Q +IL + + RLTGL + ++ E L I + Sbjct: 425 ------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQ 466 Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL------------------------ 524 +L+ R L+ +K++L ++K + RRTRIV Sbjct: 467 VLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTT 526 Query: 525 ------LDMEDEDCI-------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571 +D + +D V+T++ GY+ + + + KG Sbjct: 527 PSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKG------ 580 Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ-ARGKALINILS---LNQG 627 DF + S++ + G Y +P PQ ++ +L+N+L Sbjct: 581 --TDFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP---PQESQPCSLLNLLPNSVQKNS 635 Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687 ++I + FP+ + N ++ T G ++R +S+ QI G +KL D + + Sbjct: 636 QKIASYFLFPQQK---NLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYL 692 Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAKGDQVISMAIVLHADA 746 ++ +++ + T G+ +R ++ GRN+ G + + L G+ ++ Sbjct: 693 SLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVG--------- 743 Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806 C K+ + +L +++ Sbjct: 744 -------------------------------------------CVTPKIDDNLLL-ITQS 759 Query: 807 GFGKRTSSYDFRISNRSGKGIRATDV-SKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865 G+GKR RI+ G A SK + + ++ P ++ILV+++ + + Sbjct: 760 GYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKP---KKEVILVTNQERRLII 816 Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSV 894 P++ + I + G + E ++ V Sbjct: 817 PIDSVGIWGKDGVGDQVVKLKPQESILLV 845 >gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24] gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171] gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24] gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171] Length = 807 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 295/829 (35%), Positives = 466/829 (56%), Gaps = 49/829 (5%) Query: 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78 + + D + + + Y+ +I RA+PD RDGLKPV RRIL+ M G +K + K A+ Sbjct: 9 LPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFRKSAKTV 68 Query: 79 GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138 G V+G YHPHG++++Y+A+ R++Q W +R +L+E GN GSVDGDP AA RYTE RL Sbjct: 69 GNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTEARLSPI 128 Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 A LL DL K+TV+F N+D + +EPVVL A +PN+LVNG GI+ G AT IP H+LGEV Sbjct: 129 ASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPPHHLGEV 188 Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258 +D + ID P+ +D L+ +++GPDFPTG +I G GIK AY TG+G I+IRG + +E Sbjct: 189 IDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRGKAEVET 248 Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318 G ++QIV+TEIPY+VNKA +++K+ EL +K++ IA++RDE+DR G R+V+ELK+ A Sbjct: 249 VRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIVVELKKEA 308 Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378 +++ ILN LY+ T LQ ++ NMVA+N +P TL IL A++ ++EV+ RR++Y L Sbjct: 309 NSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITRRSQYELR 368 Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 KA +R H++ GL A++ LD+V+ IR S + A+ D+ S Sbjct: 369 KAENRQHIVEGLKKALSILDQVIETIRASKDKRNAK--------------------DNLS 408 Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498 G +E Q AI+ L+L RLT ++ E + L +I E IL S RLL Sbjct: 409 AKFG------FTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLL 462 Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556 +IK +L VK RR I + + + ++ E I +ED++VTV+ GYVKR + Sbjct: 463 QVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSH 522 Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616 A G M++ D + + F +T +VL F++ G V+ +P + G+ Sbjct: 523 NASNGKDFG-----MKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQ 577 Query: 617 ALINILSLNQGERI--TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGK 673 + NI+SL++ E I T++P E+E ++VF T++G +++ +L+ + +Q Sbjct: 578 HVANIVSLDRDETIIWATVVPNFEEEKR----FIVFVTRNGMIKKTELNQYKVQRYSRAF 633 Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 +A+ L DE++ + +DI+L T + F + G + GV+ I+L + D Sbjct: 634 VAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSP-VGVRAAGVKAINLKEDD 692 Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ-- 791 V S L+ D D ++ + A +RL + + E+ T K + + + Sbjct: 693 YVAS-GKPLNGDKD---QLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIV 748 Query: 792 --ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 E+ ++ + +EK + +R +R G DV+ E+ Sbjct: 749 GIEIVRDDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797 Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 5/83 (6%) Query: 826 GIRATDVSKIN--EIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882 G+RA V IN E + + P+N D DQ+ILV+ +G + R+ +EI ++RA +G+VI Sbjct: 677 GVRAAGVKAINLKEDDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVI 736 Query: 883 FSTAKDE--RVVSVERIRESEIV 903 F K R+V +E +R+ E+V Sbjct: 737 FKELKRNPYRIVGIEIVRDDELV 759 Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust. Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 30/189 (15%) Query: 726 GISLAKGDQVISMAI---------VLHADAD-YDERICYMKH-MSAQRRLISGDTEEITS 774 G + A+ + ++S+ + L +AD +++I ++ + +++RL+ ++ Sbjct: 412 GFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAILQSEKRLLQVIKTDLKR 471 Query: 775 LKNDSSVEGN-ISEERCQELKL-------KEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826 +K S + I E++ +E+K+ +E I+TV+++G+ KRT SN G Sbjct: 472 VKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRTGWRSHNASNGKDFG 531 Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE---IRIASRATKGVVIF 883 ++ D+ L+ F N + ++L ++KG I +PV E IR I Sbjct: 532 MKEGDI--------LLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583 Query: 884 STAKDERVV 892 S +DE ++ Sbjct: 584 SLDRDETII 592 >gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597] gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597] Length = 814 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 303/880 (34%), Positives = 479/880 (54%), Gaps = 109/880 (12%) Query: 32 YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91 Y+ +I RA+PD+RDGLKPV RRIL+ M + G ++K Y K A+ G +MG +HPHG++ Sbjct: 8 YSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDS 67 Query: 92 AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151 +IYDA+ RM+QDW R +L+E GN GS+DGDPPAA RYTE RL + A +LL D+ K TV Sbjct: 68 SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTV 127 Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211 F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HNL EV+D V +ID+P Sbjct: 128 PFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTA 187 Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271 +D LME + GPDFPTGA+I GR IK AY TG+G +V+R + IEK G +EQIVVTEI Sbjct: 188 KVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVVTEI 247 Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331 PY++NKA +++KI ++ ++ IA++RDESDR G R+ IELK+ A+ +++LN L++YT Sbjct: 248 PYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYT 307 Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391 LQ ++ NMVA++ + P + ++ IL +++A R EV++ R+++ KA R H++ GL Sbjct: 308 DLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLI 367 Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451 ++ LDEV+ +IR S N A +E ++ S++ +E Sbjct: 368 RVISILDEVIALIRASENKADA-KENLKVSYD-------------------------FTE 401 Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511 Q AI+ L+L RLT ++ E L +I I+ + ++K+EL VK + Sbjct: 402 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 461 Query: 512 LDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569 TPR + + ++++ I ED V+V+ GY+KR + A G+ Sbjct: 462 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGK--- 518 Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629 RD+D + + V T +L F++LG V ++R PI L +I + GE Sbjct: 519 --RDDDRLIFVQAVKTTQHLLMFTTLGNV----IYR-PIHE-------LADIRWKDIGEH 564 Query: 630 IT-TIMPFPEDES--------SWNNLYVVF-ATKHGNVRRNKLSDFIQI----NRSGKIA 675 ++ TI F +E +++ F AT+ G ++R + +F ++S K A Sbjct: 565 LSQTITNFETNEEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYA 624 Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735 D D+I++V + +D+ L ++ G +RF I + V G + GV+ ++L K D V Sbjct: 625 KLKDETDQIVAVAPI-KLDDVFLISQNGYALRFNIEEVPV-VGAKAAGVKAMNL-KEDDV 681 Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795 + A + + + Y + QR G + ++ + ++ + +ELK Sbjct: 682 LQSAFICNTSSFY---------LLTQR----GSLKRVSIDEIPATSRAKRGLQVLRELKN 728 Query: 796 KEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852 K + V+E+GF +G L + V++NDQ Sbjct: 729 KPHRVFLAGAVAEQGF-----------------------------VGDLFST-EVDENDQ 758